Multiple sequence alignment - TraesCS4D01G350600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G350600 chr4D 100.000 2585 0 0 1 2585 502731221 502728637 0.000000e+00 4774
1 TraesCS4D01G350600 chr4D 94.460 2184 96 15 426 2585 481887026 481889208 0.000000e+00 3339
2 TraesCS4D01G350600 chr6D 96.231 2096 58 9 425 2509 447882347 447880262 0.000000e+00 3413
3 TraesCS4D01G350600 chr6D 93.892 2194 100 23 416 2585 325418878 325416695 0.000000e+00 3278
4 TraesCS4D01G350600 chr6D 94.583 1126 44 8 422 1533 41924610 41923488 0.000000e+00 1725
5 TraesCS4D01G350600 chr5A 94.975 2169 77 9 425 2571 590663656 590661498 0.000000e+00 3373
6 TraesCS4D01G350600 chr5A 93.713 2179 113 14 426 2584 459765352 459767526 0.000000e+00 3243
7 TraesCS4D01G350600 chr5A 81.754 285 19 7 143 424 687221424 687221170 9.370000e-50 207
8 TraesCS4D01G350600 chr6A 94.654 2170 98 8 423 2585 581978723 581980881 0.000000e+00 3349
9 TraesCS4D01G350600 chr1D 94.384 2190 83 12 425 2585 278102468 278100290 0.000000e+00 3326
10 TraesCS4D01G350600 chr3D 94.353 2178 96 13 423 2585 1283910 1281745 0.000000e+00 3315
11 TraesCS4D01G350600 chr3D 93.445 2212 81 20 421 2585 376916408 376918602 0.000000e+00 3223
12 TraesCS4D01G350600 chr2D 94.172 2179 107 5 425 2584 350066011 350068188 0.000000e+00 3302
13 TraesCS4D01G350600 chr5D 93.534 2196 81 18 425 2585 98665778 98663609 0.000000e+00 3212
14 TraesCS4D01G350600 chr5D 92.384 604 26 5 420 1005 505398409 505399010 0.000000e+00 843
15 TraesCS4D01G350600 chr5D 87.778 90 10 1 18 106 359312440 359312529 1.270000e-18 104
16 TraesCS4D01G350600 chr7D 92.773 1190 47 13 424 1593 56936787 56937957 0.000000e+00 1685
17 TraesCS4D01G350600 chr1B 84.762 105 14 2 18 121 376447605 376447708 1.270000e-18 104


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G350600 chr4D 502728637 502731221 2584 True 4774 4774 100.000 1 2585 1 chr4D.!!$R1 2584
1 TraesCS4D01G350600 chr4D 481887026 481889208 2182 False 3339 3339 94.460 426 2585 1 chr4D.!!$F1 2159
2 TraesCS4D01G350600 chr6D 447880262 447882347 2085 True 3413 3413 96.231 425 2509 1 chr6D.!!$R3 2084
3 TraesCS4D01G350600 chr6D 325416695 325418878 2183 True 3278 3278 93.892 416 2585 1 chr6D.!!$R2 2169
4 TraesCS4D01G350600 chr6D 41923488 41924610 1122 True 1725 1725 94.583 422 1533 1 chr6D.!!$R1 1111
5 TraesCS4D01G350600 chr5A 590661498 590663656 2158 True 3373 3373 94.975 425 2571 1 chr5A.!!$R1 2146
6 TraesCS4D01G350600 chr5A 459765352 459767526 2174 False 3243 3243 93.713 426 2584 1 chr5A.!!$F1 2158
7 TraesCS4D01G350600 chr6A 581978723 581980881 2158 False 3349 3349 94.654 423 2585 1 chr6A.!!$F1 2162
8 TraesCS4D01G350600 chr1D 278100290 278102468 2178 True 3326 3326 94.384 425 2585 1 chr1D.!!$R1 2160
9 TraesCS4D01G350600 chr3D 1281745 1283910 2165 True 3315 3315 94.353 423 2585 1 chr3D.!!$R1 2162
10 TraesCS4D01G350600 chr3D 376916408 376918602 2194 False 3223 3223 93.445 421 2585 1 chr3D.!!$F1 2164
11 TraesCS4D01G350600 chr2D 350066011 350068188 2177 False 3302 3302 94.172 425 2584 1 chr2D.!!$F1 2159
12 TraesCS4D01G350600 chr5D 98663609 98665778 2169 True 3212 3212 93.534 425 2585 1 chr5D.!!$R1 2160
13 TraesCS4D01G350600 chr5D 505398409 505399010 601 False 843 843 92.384 420 1005 1 chr5D.!!$F2 585
14 TraesCS4D01G350600 chr7D 56936787 56937957 1170 False 1685 1685 92.773 424 1593 1 chr7D.!!$F1 1169

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
396 397 0.109735 GCAACTTCCTAAAGCACGCC 60.11 55.0 0.0 0.0 35.81 5.68 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2145 2238 0.323302 TTACAACATCGCCAGGCTCA 59.677 50.0 10.54 0.0 0.0 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 9.985318 TTTATCACTGTGAAATTTTTGCTTTTG 57.015 25.926 15.31 0.00 0.00 2.44
30 31 5.029654 CACTGTGAAATTTTTGCTTTTGCC 58.970 37.500 0.32 0.00 46.87 4.52
31 32 4.699257 ACTGTGAAATTTTTGCTTTTGCCA 59.301 33.333 0.00 0.00 46.87 4.92
32 33 5.357596 ACTGTGAAATTTTTGCTTTTGCCAT 59.642 32.000 0.00 0.00 46.87 4.40
33 34 5.579718 TGTGAAATTTTTGCTTTTGCCATG 58.420 33.333 0.00 0.00 46.87 3.66
34 35 4.977347 GTGAAATTTTTGCTTTTGCCATGG 59.023 37.500 7.63 7.63 46.87 3.66
35 36 4.885907 TGAAATTTTTGCTTTTGCCATGGA 59.114 33.333 18.40 0.00 46.87 3.41
36 37 5.359009 TGAAATTTTTGCTTTTGCCATGGAA 59.641 32.000 18.40 0.00 46.87 3.53
37 38 6.040616 TGAAATTTTTGCTTTTGCCATGGAAT 59.959 30.769 18.40 0.00 46.87 3.01
38 39 4.832590 TTTTTGCTTTTGCCATGGAATG 57.167 36.364 18.40 5.31 46.87 2.67
39 40 3.488778 TTTGCTTTTGCCATGGAATGT 57.511 38.095 18.40 0.00 44.81 2.71
40 41 2.747396 TGCTTTTGCCATGGAATGTC 57.253 45.000 18.40 0.00 44.81 3.06
41 42 1.969208 TGCTTTTGCCATGGAATGTCA 59.031 42.857 18.40 0.00 44.81 3.58
42 43 2.367894 TGCTTTTGCCATGGAATGTCAA 59.632 40.909 18.40 6.80 40.86 3.18
43 44 3.008157 TGCTTTTGCCATGGAATGTCAAT 59.992 39.130 18.40 0.00 42.26 2.57
44 45 4.004982 GCTTTTGCCATGGAATGTCAATT 58.995 39.130 18.40 0.00 42.26 2.32
45 46 5.177326 GCTTTTGCCATGGAATGTCAATTA 58.823 37.500 18.40 0.66 42.26 1.40
46 47 5.818857 GCTTTTGCCATGGAATGTCAATTAT 59.181 36.000 18.40 0.00 42.26 1.28
47 48 6.238266 GCTTTTGCCATGGAATGTCAATTATG 60.238 38.462 18.40 0.00 42.26 1.90
48 49 6.541934 TTTGCCATGGAATGTCAATTATGA 57.458 33.333 18.40 0.00 42.26 2.15
49 50 6.734502 TTGCCATGGAATGTCAATTATGAT 57.265 33.333 18.40 0.00 37.26 2.45
50 51 7.836479 TTGCCATGGAATGTCAATTATGATA 57.164 32.000 18.40 0.00 37.26 2.15
51 52 7.836479 TGCCATGGAATGTCAATTATGATAA 57.164 32.000 18.40 0.00 44.81 1.75
52 53 8.425237 TGCCATGGAATGTCAATTATGATAAT 57.575 30.769 18.40 0.00 44.81 1.28
53 54 8.872134 TGCCATGGAATGTCAATTATGATAATT 58.128 29.630 18.40 4.65 44.81 1.40
54 55 9.146984 GCCATGGAATGTCAATTATGATAATTG 57.853 33.333 24.83 24.83 44.81 2.32
79 80 8.973378 TGTCAAAAACTAAAAGTGACAAAAGTG 58.027 29.630 2.48 0.00 44.06 3.16
80 81 9.187455 GTCAAAAACTAAAAGTGACAAAAGTGA 57.813 29.630 0.00 0.00 38.74 3.41
81 82 9.751542 TCAAAAACTAAAAGTGACAAAAGTGAA 57.248 25.926 0.00 0.00 0.00 3.18
85 86 9.705290 AAACTAAAAGTGACAAAAGTGAAATGT 57.295 25.926 0.00 0.00 0.00 2.71
86 87 9.705290 AACTAAAAGTGACAAAAGTGAAATGTT 57.295 25.926 0.00 0.00 0.00 2.71
101 102 8.045176 AGTGAAATGTTAAAATCTAGAGTGGC 57.955 34.615 0.00 0.00 0.00 5.01
102 103 7.665559 AGTGAAATGTTAAAATCTAGAGTGGCA 59.334 33.333 0.00 0.00 0.00 4.92
103 104 8.462016 GTGAAATGTTAAAATCTAGAGTGGCAT 58.538 33.333 0.00 0.00 0.00 4.40
104 105 9.679661 TGAAATGTTAAAATCTAGAGTGGCATA 57.320 29.630 0.00 0.00 0.00 3.14
116 117 7.940850 TCTAGAGTGGCATAAATAAAATTGGC 58.059 34.615 0.00 0.00 35.41 4.52
117 118 6.543430 AGAGTGGCATAAATAAAATTGGCA 57.457 33.333 0.00 0.00 41.64 4.92
118 119 6.945218 AGAGTGGCATAAATAAAATTGGCAA 58.055 32.000 0.68 0.68 44.76 4.52
119 120 7.393216 AGAGTGGCATAAATAAAATTGGCAAA 58.607 30.769 3.01 0.00 44.76 3.68
120 121 7.882271 AGAGTGGCATAAATAAAATTGGCAAAA 59.118 29.630 3.01 0.00 44.76 2.44
121 122 8.401490 AGTGGCATAAATAAAATTGGCAAAAA 57.599 26.923 3.01 0.00 44.76 1.94
122 123 9.022884 AGTGGCATAAATAAAATTGGCAAAAAT 57.977 25.926 3.01 0.00 44.76 1.82
123 124 9.074443 GTGGCATAAATAAAATTGGCAAAAATG 57.926 29.630 3.01 1.19 44.76 2.32
124 125 7.758528 TGGCATAAATAAAATTGGCAAAAATGC 59.241 29.630 3.01 10.21 41.05 3.56
125 126 7.758528 GGCATAAATAAAATTGGCAAAAATGCA 59.241 29.630 3.01 0.00 37.23 3.96
126 127 9.136952 GCATAAATAAAATTGGCAAAAATGCAA 57.863 25.926 3.01 0.00 35.94 4.08
131 132 8.937634 ATAAAATTGGCAAAAATGCAAAAACA 57.062 23.077 3.01 0.00 36.33 2.83
132 133 7.662604 AAAATTGGCAAAAATGCAAAAACAA 57.337 24.000 3.01 0.00 36.33 2.83
133 134 6.644191 AATTGGCAAAAATGCAAAAACAAC 57.356 29.167 3.01 0.00 36.33 3.32
134 135 4.771590 TGGCAAAAATGCAAAAACAACA 57.228 31.818 2.97 0.00 36.33 3.33
135 136 5.320549 TGGCAAAAATGCAAAAACAACAT 57.679 30.435 2.97 0.00 36.33 2.71
136 137 5.717119 TGGCAAAAATGCAAAAACAACATT 58.283 29.167 2.97 0.00 35.59 2.71
137 138 6.161381 TGGCAAAAATGCAAAAACAACATTT 58.839 28.000 2.97 0.00 43.84 2.32
144 145 8.686397 AAATGCAAAAACAACATTTTCCTTTC 57.314 26.923 0.00 0.00 40.20 2.62
145 146 6.188400 TGCAAAAACAACATTTTCCTTTCC 57.812 33.333 0.00 0.00 30.31 3.13
146 147 5.707298 TGCAAAAACAACATTTTCCTTTCCA 59.293 32.000 0.00 0.00 30.31 3.53
147 148 6.207417 TGCAAAAACAACATTTTCCTTTCCAA 59.793 30.769 0.00 0.00 30.31 3.53
148 149 7.087007 GCAAAAACAACATTTTCCTTTCCAAA 58.913 30.769 0.00 0.00 30.31 3.28
149 150 7.061673 GCAAAAACAACATTTTCCTTTCCAAAC 59.938 33.333 0.00 0.00 30.31 2.93
150 151 7.994425 AAAACAACATTTTCCTTTCCAAACT 57.006 28.000 0.00 0.00 0.00 2.66
151 152 9.508642 AAAAACAACATTTTCCTTTCCAAACTA 57.491 25.926 0.00 0.00 0.00 2.24
152 153 8.716646 AAACAACATTTTCCTTTCCAAACTAG 57.283 30.769 0.00 0.00 0.00 2.57
153 154 6.816136 ACAACATTTTCCTTTCCAAACTAGG 58.184 36.000 0.00 0.00 0.00 3.02
154 155 6.183360 ACAACATTTTCCTTTCCAAACTAGGG 60.183 38.462 0.00 0.00 0.00 3.53
155 156 4.838423 ACATTTTCCTTTCCAAACTAGGGG 59.162 41.667 0.00 0.00 0.00 4.79
156 157 4.546224 TTTTCCTTTCCAAACTAGGGGT 57.454 40.909 0.00 0.00 0.00 4.95
157 158 5.666474 TTTTCCTTTCCAAACTAGGGGTA 57.334 39.130 0.00 0.00 0.00 3.69
158 159 4.921644 TTCCTTTCCAAACTAGGGGTAG 57.078 45.455 0.00 0.00 0.00 3.18
159 160 3.878086 TCCTTTCCAAACTAGGGGTAGT 58.122 45.455 0.00 0.00 0.00 2.73
160 161 5.027385 TCCTTTCCAAACTAGGGGTAGTA 57.973 43.478 0.00 0.00 0.00 1.82
161 162 5.028131 TCCTTTCCAAACTAGGGGTAGTAG 58.972 45.833 0.00 0.00 0.00 2.57
162 163 5.028131 CCTTTCCAAACTAGGGGTAGTAGA 58.972 45.833 0.00 0.00 0.00 2.59
163 164 5.486419 CCTTTCCAAACTAGGGGTAGTAGAA 59.514 44.000 0.00 0.00 0.00 2.10
164 165 6.364568 TTTCCAAACTAGGGGTAGTAGAAC 57.635 41.667 0.00 0.00 0.00 3.01
165 166 4.356436 TCCAAACTAGGGGTAGTAGAACC 58.644 47.826 0.00 0.00 38.94 3.62
176 177 4.267536 GGTAGTAGAACCCAAATTCACCC 58.732 47.826 0.00 0.00 33.02 4.61
177 178 3.451402 AGTAGAACCCAAATTCACCCC 57.549 47.619 0.00 0.00 0.00 4.95
178 179 2.089201 GTAGAACCCAAATTCACCCCG 58.911 52.381 0.00 0.00 0.00 5.73
179 180 0.251608 AGAACCCAAATTCACCCCGG 60.252 55.000 0.00 0.00 0.00 5.73
180 181 1.884075 GAACCCAAATTCACCCCGGC 61.884 60.000 0.00 0.00 0.00 6.13
181 182 3.448340 CCCAAATTCACCCCGGCG 61.448 66.667 0.00 0.00 0.00 6.46
182 183 4.128388 CCAAATTCACCCCGGCGC 62.128 66.667 0.00 0.00 0.00 6.53
183 184 3.369400 CAAATTCACCCCGGCGCA 61.369 61.111 10.83 0.00 0.00 6.09
184 185 3.370231 AAATTCACCCCGGCGCAC 61.370 61.111 10.83 0.00 0.00 5.34
185 186 4.652131 AATTCACCCCGGCGCACA 62.652 61.111 10.83 0.00 0.00 4.57
193 194 3.418913 CCGGCGCACACGATTGAA 61.419 61.111 10.83 0.00 43.93 2.69
194 195 2.553770 CGGCGCACACGATTGAAA 59.446 55.556 10.83 0.00 43.93 2.69
195 196 1.509787 CGGCGCACACGATTGAAAG 60.510 57.895 10.83 0.00 43.93 2.62
196 197 1.866237 GGCGCACACGATTGAAAGA 59.134 52.632 10.83 0.00 43.93 2.52
197 198 0.447801 GGCGCACACGATTGAAAGAT 59.552 50.000 10.83 0.00 43.93 2.40
198 199 1.529826 GGCGCACACGATTGAAAGATC 60.530 52.381 10.83 0.00 43.93 2.75
207 208 3.265070 GATTGAAAGATCGAGGCATGC 57.735 47.619 9.90 9.90 0.00 4.06
208 209 2.112380 TTGAAAGATCGAGGCATGCA 57.888 45.000 21.36 0.00 0.00 3.96
209 210 1.372582 TGAAAGATCGAGGCATGCAC 58.627 50.000 21.36 11.88 0.00 4.57
210 211 1.338960 TGAAAGATCGAGGCATGCACA 60.339 47.619 21.36 0.00 0.00 4.57
211 212 1.739466 GAAAGATCGAGGCATGCACAA 59.261 47.619 21.36 1.57 0.00 3.33
212 213 2.048444 AAGATCGAGGCATGCACAAT 57.952 45.000 21.36 6.91 0.00 2.71
213 214 1.306148 AGATCGAGGCATGCACAATG 58.694 50.000 21.36 4.15 39.49 2.82
234 235 1.670791 ACCCGCCGGTGTAATTATTG 58.329 50.000 15.14 0.00 42.48 1.90
235 236 0.948678 CCCGCCGGTGTAATTATTGG 59.051 55.000 15.14 0.87 0.00 3.16
236 237 0.309612 CCGCCGGTGTAATTATTGGC 59.690 55.000 15.14 9.09 39.10 4.52
237 238 1.018148 CGCCGGTGTAATTATTGGCA 58.982 50.000 6.91 0.00 42.57 4.92
238 239 1.002900 CGCCGGTGTAATTATTGGCAG 60.003 52.381 6.91 8.30 42.57 4.85
239 240 1.336755 GCCGGTGTAATTATTGGCAGG 59.663 52.381 1.90 5.05 42.03 4.85
240 241 2.925724 CCGGTGTAATTATTGGCAGGA 58.074 47.619 0.00 0.00 0.00 3.86
241 242 2.878406 CCGGTGTAATTATTGGCAGGAG 59.122 50.000 0.00 0.00 0.00 3.69
242 243 3.433031 CCGGTGTAATTATTGGCAGGAGA 60.433 47.826 0.00 0.00 0.00 3.71
243 244 4.389374 CGGTGTAATTATTGGCAGGAGAT 58.611 43.478 0.00 0.00 0.00 2.75
244 245 4.821805 CGGTGTAATTATTGGCAGGAGATT 59.178 41.667 0.00 0.00 0.00 2.40
245 246 5.277974 CGGTGTAATTATTGGCAGGAGATTG 60.278 44.000 0.00 0.00 0.00 2.67
246 247 5.827797 GGTGTAATTATTGGCAGGAGATTGA 59.172 40.000 0.00 0.00 0.00 2.57
247 248 6.016777 GGTGTAATTATTGGCAGGAGATTGAG 60.017 42.308 0.00 0.00 0.00 3.02
248 249 5.532406 TGTAATTATTGGCAGGAGATTGAGC 59.468 40.000 0.00 0.00 0.00 4.26
249 250 3.650281 TTATTGGCAGGAGATTGAGCA 57.350 42.857 0.00 0.00 0.00 4.26
250 251 2.519771 ATTGGCAGGAGATTGAGCAA 57.480 45.000 0.00 0.00 0.00 3.91
251 252 1.830279 TTGGCAGGAGATTGAGCAAG 58.170 50.000 0.00 0.00 0.00 4.01
252 253 0.694771 TGGCAGGAGATTGAGCAAGT 59.305 50.000 0.00 0.00 0.00 3.16
253 254 1.908619 TGGCAGGAGATTGAGCAAGTA 59.091 47.619 0.00 0.00 0.00 2.24
254 255 2.093288 TGGCAGGAGATTGAGCAAGTAG 60.093 50.000 0.00 0.00 0.00 2.57
255 256 2.559440 GCAGGAGATTGAGCAAGTAGG 58.441 52.381 0.00 0.00 0.00 3.18
256 257 2.559440 CAGGAGATTGAGCAAGTAGGC 58.441 52.381 0.00 0.00 0.00 3.93
257 258 2.093288 CAGGAGATTGAGCAAGTAGGCA 60.093 50.000 0.00 0.00 35.83 4.75
258 259 2.093235 AGGAGATTGAGCAAGTAGGCAC 60.093 50.000 0.00 0.00 35.83 5.01
259 260 1.929836 GAGATTGAGCAAGTAGGCACG 59.070 52.381 0.00 0.00 35.83 5.34
260 261 1.276421 AGATTGAGCAAGTAGGCACGT 59.724 47.619 0.00 0.00 35.83 4.49
261 262 2.076863 GATTGAGCAAGTAGGCACGTT 58.923 47.619 0.00 0.00 35.83 3.99
262 263 2.823924 TTGAGCAAGTAGGCACGTTA 57.176 45.000 0.00 0.00 35.83 3.18
263 264 2.074547 TGAGCAAGTAGGCACGTTAC 57.925 50.000 0.00 0.00 35.83 2.50
264 265 0.989890 GAGCAAGTAGGCACGTTACG 59.010 55.000 2.19 2.19 35.83 3.18
265 266 0.316204 AGCAAGTAGGCACGTTACGT 59.684 50.000 3.95 3.95 42.36 3.57
275 276 3.706287 ACGTTACGTGCATGATCGA 57.294 47.368 14.17 0.00 39.18 3.59
276 277 1.985334 ACGTTACGTGCATGATCGAA 58.015 45.000 14.17 0.00 39.18 3.71
277 278 1.652124 ACGTTACGTGCATGATCGAAC 59.348 47.619 14.17 9.75 39.18 3.95
278 279 1.006391 CGTTACGTGCATGATCGAACC 60.006 52.381 14.17 0.00 0.00 3.62
279 280 2.268298 GTTACGTGCATGATCGAACCT 58.732 47.619 14.17 0.00 0.00 3.50
280 281 1.921243 TACGTGCATGATCGAACCTG 58.079 50.000 14.17 0.00 0.00 4.00
281 282 0.740868 ACGTGCATGATCGAACCTGG 60.741 55.000 14.17 0.00 0.00 4.45
282 283 0.460109 CGTGCATGATCGAACCTGGA 60.460 55.000 0.00 0.00 0.00 3.86
283 284 1.293924 GTGCATGATCGAACCTGGAG 58.706 55.000 0.00 0.00 0.00 3.86
284 285 0.462581 TGCATGATCGAACCTGGAGC 60.463 55.000 0.00 0.00 0.00 4.70
285 286 1.162800 GCATGATCGAACCTGGAGCC 61.163 60.000 0.00 0.00 0.00 4.70
286 287 0.877649 CATGATCGAACCTGGAGCCG 60.878 60.000 0.00 0.49 0.00 5.52
287 288 2.586357 GATCGAACCTGGAGCCGC 60.586 66.667 0.00 0.00 0.00 6.53
288 289 3.371097 GATCGAACCTGGAGCCGCA 62.371 63.158 0.00 0.00 0.00 5.69
289 290 2.650813 GATCGAACCTGGAGCCGCAT 62.651 60.000 0.00 0.00 0.00 4.73
290 291 2.930385 ATCGAACCTGGAGCCGCATG 62.930 60.000 0.00 0.00 0.00 4.06
291 292 3.512516 GAACCTGGAGCCGCATGC 61.513 66.667 7.91 7.91 41.71 4.06
303 304 2.512286 GCATGCTAGCTGCGTCCA 60.512 61.111 17.23 0.00 46.63 4.02
304 305 2.817423 GCATGCTAGCTGCGTCCAC 61.817 63.158 17.23 0.00 46.63 4.02
305 306 1.153489 CATGCTAGCTGCGTCCACT 60.153 57.895 17.23 0.00 46.63 4.00
306 307 0.742281 CATGCTAGCTGCGTCCACTT 60.742 55.000 17.23 0.00 46.63 3.16
307 308 0.460987 ATGCTAGCTGCGTCCACTTC 60.461 55.000 17.23 0.00 46.63 3.01
308 309 1.216710 GCTAGCTGCGTCCACTTCT 59.783 57.895 7.70 0.00 0.00 2.85
309 310 0.804156 GCTAGCTGCGTCCACTTCTC 60.804 60.000 7.70 0.00 0.00 2.87
310 311 0.524392 CTAGCTGCGTCCACTTCTCG 60.524 60.000 0.00 0.00 0.00 4.04
311 312 1.241990 TAGCTGCGTCCACTTCTCGT 61.242 55.000 0.00 0.00 0.00 4.18
312 313 1.211969 GCTGCGTCCACTTCTCGTA 59.788 57.895 0.00 0.00 0.00 3.43
313 314 1.071567 GCTGCGTCCACTTCTCGTAC 61.072 60.000 0.00 0.00 0.00 3.67
314 315 0.793478 CTGCGTCCACTTCTCGTACG 60.793 60.000 9.53 9.53 36.67 3.67
315 316 1.208614 GCGTCCACTTCTCGTACGT 59.791 57.895 16.05 0.00 36.03 3.57
316 317 1.063951 GCGTCCACTTCTCGTACGTG 61.064 60.000 16.05 13.38 36.03 4.49
318 319 0.595095 GTCCACTTCTCGTACGTGGT 59.405 55.000 16.05 4.33 46.36 4.16
319 320 0.594602 TCCACTTCTCGTACGTGGTG 59.405 55.000 16.05 15.63 46.36 4.17
320 321 0.388134 CCACTTCTCGTACGTGGTGG 60.388 60.000 22.43 22.43 42.45 4.61
321 322 0.594602 CACTTCTCGTACGTGGTGGA 59.405 55.000 16.05 4.60 0.00 4.02
322 323 0.879765 ACTTCTCGTACGTGGTGGAG 59.120 55.000 16.05 10.43 0.00 3.86
323 324 0.456312 CTTCTCGTACGTGGTGGAGC 60.456 60.000 16.05 0.00 0.00 4.70
324 325 1.870055 TTCTCGTACGTGGTGGAGCC 61.870 60.000 16.05 0.00 37.90 4.70
325 326 3.678717 CTCGTACGTGGTGGAGCCG 62.679 68.421 16.05 0.00 41.21 5.52
326 327 4.047059 CGTACGTGGTGGAGCCGT 62.047 66.667 7.22 0.00 41.21 5.68
327 328 2.431942 GTACGTGGTGGAGCCGTG 60.432 66.667 0.00 0.00 41.21 4.94
328 329 4.367023 TACGTGGTGGAGCCGTGC 62.367 66.667 0.00 0.00 41.21 5.34
331 332 4.722700 GTGGTGGAGCCGTGCCAT 62.723 66.667 0.00 0.00 41.21 4.40
332 333 4.408821 TGGTGGAGCCGTGCCATC 62.409 66.667 0.00 0.00 41.21 3.51
334 335 4.760047 GTGGAGCCGTGCCATCGT 62.760 66.667 0.00 0.00 37.81 3.73
335 336 4.015406 TGGAGCCGTGCCATCGTT 62.015 61.111 0.00 0.00 0.00 3.85
336 337 3.195698 GGAGCCGTGCCATCGTTC 61.196 66.667 0.00 0.00 0.00 3.95
337 338 3.554692 GAGCCGTGCCATCGTTCG 61.555 66.667 0.00 0.00 0.00 3.95
340 341 4.444838 CCGTGCCATCGTTCGGGA 62.445 66.667 0.00 0.00 39.41 5.14
341 342 2.885644 CGTGCCATCGTTCGGGAG 60.886 66.667 0.00 0.00 0.00 4.30
342 343 2.511600 GTGCCATCGTTCGGGAGG 60.512 66.667 0.00 0.00 0.00 4.30
343 344 3.781307 TGCCATCGTTCGGGAGGG 61.781 66.667 0.00 0.00 40.75 4.30
344 345 3.782443 GCCATCGTTCGGGAGGGT 61.782 66.667 5.03 0.00 39.97 4.34
345 346 2.499685 CCATCGTTCGGGAGGGTC 59.500 66.667 0.00 0.00 33.31 4.46
346 347 2.355986 CCATCGTTCGGGAGGGTCA 61.356 63.158 0.00 0.00 33.31 4.02
347 348 1.686325 CCATCGTTCGGGAGGGTCAT 61.686 60.000 0.00 0.00 33.31 3.06
348 349 0.249489 CATCGTTCGGGAGGGTCATC 60.249 60.000 0.00 0.00 0.00 2.92
349 350 1.735376 ATCGTTCGGGAGGGTCATCG 61.735 60.000 0.00 0.00 0.00 3.84
350 351 2.202892 GTTCGGGAGGGTCATCGC 60.203 66.667 0.00 0.00 0.00 4.58
351 352 3.467226 TTCGGGAGGGTCATCGCC 61.467 66.667 0.00 0.00 0.00 5.54
352 353 3.976490 TTCGGGAGGGTCATCGCCT 62.976 63.158 0.00 0.00 0.00 5.52
353 354 3.917760 CGGGAGGGTCATCGCCTC 61.918 72.222 0.00 0.00 33.36 4.70
354 355 2.764128 GGGAGGGTCATCGCCTCA 60.764 66.667 8.10 0.00 34.74 3.86
355 356 2.367202 GGGAGGGTCATCGCCTCAA 61.367 63.158 8.10 0.00 34.74 3.02
356 357 1.602237 GGAGGGTCATCGCCTCAAA 59.398 57.895 8.10 0.00 34.74 2.69
357 358 0.181350 GGAGGGTCATCGCCTCAAAT 59.819 55.000 8.10 0.00 34.74 2.32
358 359 1.587547 GAGGGTCATCGCCTCAAATC 58.412 55.000 0.00 0.00 33.90 2.17
359 360 0.179073 AGGGTCATCGCCTCAAATCG 60.179 55.000 0.00 0.00 0.00 3.34
360 361 0.179084 GGGTCATCGCCTCAAATCGA 60.179 55.000 0.00 0.00 39.17 3.59
361 362 1.541233 GGGTCATCGCCTCAAATCGAT 60.541 52.381 0.00 0.00 45.11 3.59
365 366 1.506493 ATCGCCTCAAATCGATGAGC 58.494 50.000 10.03 5.72 44.43 4.26
366 367 0.175531 TCGCCTCAAATCGATGAGCA 59.824 50.000 10.03 0.00 44.43 4.26
367 368 0.302890 CGCCTCAAATCGATGAGCAC 59.697 55.000 10.03 4.43 44.43 4.40
368 369 1.661341 GCCTCAAATCGATGAGCACT 58.339 50.000 10.03 0.00 44.43 4.40
369 370 2.799562 CGCCTCAAATCGATGAGCACTA 60.800 50.000 10.03 0.00 44.43 2.74
370 371 3.397482 GCCTCAAATCGATGAGCACTAT 58.603 45.455 10.03 0.00 44.43 2.12
371 372 4.560128 GCCTCAAATCGATGAGCACTATA 58.440 43.478 10.03 0.00 44.43 1.31
372 373 4.624882 GCCTCAAATCGATGAGCACTATAG 59.375 45.833 10.03 0.00 44.43 1.31
373 374 4.624882 CCTCAAATCGATGAGCACTATAGC 59.375 45.833 10.03 0.00 44.43 2.97
375 376 5.847304 TCAAATCGATGAGCACTATAGCTT 58.153 37.500 0.00 0.00 46.75 3.74
376 377 6.981722 TCAAATCGATGAGCACTATAGCTTA 58.018 36.000 0.00 0.00 46.75 3.09
377 378 7.087007 TCAAATCGATGAGCACTATAGCTTAG 58.913 38.462 0.00 0.00 46.75 2.18
378 379 4.427096 TCGATGAGCACTATAGCTTAGC 57.573 45.455 0.00 0.00 46.75 3.09
379 380 3.821033 TCGATGAGCACTATAGCTTAGCA 59.179 43.478 7.07 0.00 46.75 3.49
380 381 4.278419 TCGATGAGCACTATAGCTTAGCAA 59.722 41.667 7.07 0.00 46.75 3.91
381 382 4.384247 CGATGAGCACTATAGCTTAGCAAC 59.616 45.833 7.07 0.00 46.75 4.17
382 383 5.537188 GATGAGCACTATAGCTTAGCAACT 58.463 41.667 7.07 0.00 46.75 3.16
383 384 5.344743 TGAGCACTATAGCTTAGCAACTT 57.655 39.130 7.07 0.00 46.75 2.66
384 385 5.352284 TGAGCACTATAGCTTAGCAACTTC 58.648 41.667 7.07 0.00 46.75 3.01
385 386 4.698575 AGCACTATAGCTTAGCAACTTCC 58.301 43.478 7.07 0.00 43.70 3.46
386 387 4.407296 AGCACTATAGCTTAGCAACTTCCT 59.593 41.667 7.07 0.00 43.70 3.36
387 388 5.598830 AGCACTATAGCTTAGCAACTTCCTA 59.401 40.000 7.07 0.00 43.70 2.94
388 389 6.098409 AGCACTATAGCTTAGCAACTTCCTAA 59.902 38.462 7.07 0.00 43.70 2.69
389 390 6.761714 GCACTATAGCTTAGCAACTTCCTAAA 59.238 38.462 7.07 0.00 0.00 1.85
390 391 7.042389 GCACTATAGCTTAGCAACTTCCTAAAG 60.042 40.741 7.07 0.00 38.54 1.85
391 392 6.987404 ACTATAGCTTAGCAACTTCCTAAAGC 59.013 38.462 7.07 0.00 35.81 3.51
392 393 4.021102 AGCTTAGCAACTTCCTAAAGCA 57.979 40.909 7.07 0.00 35.81 3.91
393 394 3.753797 AGCTTAGCAACTTCCTAAAGCAC 59.246 43.478 7.07 0.00 35.81 4.40
394 395 3.424962 GCTTAGCAACTTCCTAAAGCACG 60.425 47.826 0.00 0.00 35.81 5.34
395 396 0.875059 AGCAACTTCCTAAAGCACGC 59.125 50.000 0.00 0.00 35.81 5.34
396 397 0.109735 GCAACTTCCTAAAGCACGCC 60.110 55.000 0.00 0.00 35.81 5.68
397 398 1.234821 CAACTTCCTAAAGCACGCCA 58.765 50.000 0.00 0.00 35.81 5.69
398 399 1.606668 CAACTTCCTAAAGCACGCCAA 59.393 47.619 0.00 0.00 35.81 4.52
399 400 1.235724 ACTTCCTAAAGCACGCCAAC 58.764 50.000 0.00 0.00 35.81 3.77
400 401 1.234821 CTTCCTAAAGCACGCCAACA 58.765 50.000 0.00 0.00 0.00 3.33
401 402 1.197721 CTTCCTAAAGCACGCCAACAG 59.802 52.381 0.00 0.00 0.00 3.16
402 403 0.394938 TCCTAAAGCACGCCAACAGA 59.605 50.000 0.00 0.00 0.00 3.41
403 404 1.003118 TCCTAAAGCACGCCAACAGAT 59.997 47.619 0.00 0.00 0.00 2.90
404 405 2.235155 TCCTAAAGCACGCCAACAGATA 59.765 45.455 0.00 0.00 0.00 1.98
405 406 3.006940 CCTAAAGCACGCCAACAGATAA 58.993 45.455 0.00 0.00 0.00 1.75
406 407 3.063997 CCTAAAGCACGCCAACAGATAAG 59.936 47.826 0.00 0.00 0.00 1.73
407 408 2.472695 AAGCACGCCAACAGATAAGA 57.527 45.000 0.00 0.00 0.00 2.10
408 409 2.698855 AGCACGCCAACAGATAAGAT 57.301 45.000 0.00 0.00 0.00 2.40
409 410 2.555199 AGCACGCCAACAGATAAGATC 58.445 47.619 0.00 0.00 0.00 2.75
410 411 1.599542 GCACGCCAACAGATAAGATCC 59.400 52.381 0.00 0.00 0.00 3.36
411 412 2.743183 GCACGCCAACAGATAAGATCCT 60.743 50.000 0.00 0.00 0.00 3.24
412 413 3.126831 CACGCCAACAGATAAGATCCTC 58.873 50.000 0.00 0.00 0.00 3.71
413 414 2.223829 ACGCCAACAGATAAGATCCTCG 60.224 50.000 0.00 0.00 0.00 4.63
414 415 2.223829 CGCCAACAGATAAGATCCTCGT 60.224 50.000 0.00 0.00 0.00 4.18
479 480 4.129737 CGCGCGGGAAAGGAGAGA 62.130 66.667 24.84 0.00 0.00 3.10
586 587 2.433318 GGCAGTTTCTCGCGAGCT 60.433 61.111 30.97 19.30 0.00 4.09
897 958 2.044352 TCCTCGTCTCCGATGCCA 60.044 61.111 0.00 0.00 43.27 4.92
913 978 2.436646 CAGTAAGCAGCACCCCCG 60.437 66.667 0.00 0.00 0.00 5.73
1463 1532 0.546267 AGACCATCTGGCCAGACACT 60.546 55.000 37.39 26.92 40.75 3.55
1507 1576 6.409695 CCCAAGATGGTATCCATACTTCAAGT 60.410 42.308 0.00 0.00 45.26 3.16
1625 1696 1.691976 TGGGGCAATAGATGGTACTCG 59.308 52.381 0.00 0.00 0.00 4.18
1629 1700 3.431766 GGGCAATAGATGGTACTCGTGTT 60.432 47.826 0.00 0.00 0.00 3.32
1639 1710 2.029649 GGTACTCGTGTTACTGCCAGAA 60.030 50.000 0.00 0.00 0.00 3.02
1683 1754 0.044855 ACAGGGGGAGGAAGCACTAT 59.955 55.000 0.00 0.00 0.00 2.12
1749 1820 0.464916 CATATGTGCTGGCTGGCTGA 60.465 55.000 12.22 0.00 0.00 4.26
1766 1837 3.005539 AGAGGGGTCAGCGCATGT 61.006 61.111 11.47 0.00 0.00 3.21
1843 1914 5.021458 ACGGAAAGTTCTACCTTGGAGATA 58.979 41.667 0.00 0.00 0.00 1.98
2145 2238 1.280421 GTGCCTGAGGAGGAAGATGTT 59.720 52.381 0.65 0.00 42.93 2.71
2153 2246 1.407989 GGAGGAAGATGTTGAGCCTGG 60.408 57.143 0.00 0.00 0.00 4.45
2173 2266 0.739462 CGATGTTGTAAGCTCCGGCA 60.739 55.000 0.00 0.00 41.70 5.69
2229 2323 1.341080 CAAAAGGTTGGAGTGGGCAT 58.659 50.000 0.00 0.00 0.00 4.40
2428 2616 7.260558 TGATAGTAGTTAGGATGAACTGTCG 57.739 40.000 0.00 0.00 39.96 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 8.121708 GCAAAAGCAAAAATTTCACAGTGATAA 58.878 29.630 3.45 2.57 0.00 1.75
4 5 7.254727 GGCAAAAGCAAAAATTTCACAGTGATA 60.255 33.333 3.45 0.00 0.00 2.15
5 6 6.458615 GGCAAAAGCAAAAATTTCACAGTGAT 60.459 34.615 3.45 0.00 0.00 3.06
6 7 5.163774 GGCAAAAGCAAAAATTTCACAGTGA 60.164 36.000 0.00 0.00 0.00 3.41
7 8 5.029654 GGCAAAAGCAAAAATTTCACAGTG 58.970 37.500 0.00 0.00 0.00 3.66
8 9 4.699257 TGGCAAAAGCAAAAATTTCACAGT 59.301 33.333 0.00 0.00 0.00 3.55
9 10 5.232610 TGGCAAAAGCAAAAATTTCACAG 57.767 34.783 0.00 0.00 0.00 3.66
10 11 5.450137 CCATGGCAAAAGCAAAAATTTCACA 60.450 36.000 0.00 0.00 0.00 3.58
11 12 4.977347 CCATGGCAAAAGCAAAAATTTCAC 59.023 37.500 0.00 0.00 0.00 3.18
12 13 4.885907 TCCATGGCAAAAGCAAAAATTTCA 59.114 33.333 6.96 0.00 0.00 2.69
13 14 5.435820 TCCATGGCAAAAGCAAAAATTTC 57.564 34.783 6.96 0.00 0.00 2.17
14 15 5.848833 TTCCATGGCAAAAGCAAAAATTT 57.151 30.435 6.96 0.00 0.00 1.82
15 16 5.302313 ACATTCCATGGCAAAAGCAAAAATT 59.698 32.000 6.96 0.00 33.60 1.82
16 17 4.828387 ACATTCCATGGCAAAAGCAAAAAT 59.172 33.333 6.96 0.00 33.60 1.82
17 18 4.205587 ACATTCCATGGCAAAAGCAAAAA 58.794 34.783 6.96 0.00 33.60 1.94
18 19 3.814283 GACATTCCATGGCAAAAGCAAAA 59.186 39.130 6.96 0.00 38.49 2.44
19 20 3.401182 GACATTCCATGGCAAAAGCAAA 58.599 40.909 6.96 0.00 38.49 3.68
20 21 3.042871 GACATTCCATGGCAAAAGCAA 57.957 42.857 6.96 0.00 38.49 3.91
21 22 2.747396 GACATTCCATGGCAAAAGCA 57.253 45.000 6.96 0.00 38.49 3.91
28 29 9.146984 CAATTATCATAATTGACATTCCATGGC 57.853 33.333 21.30 0.00 39.36 4.40
53 54 8.973378 CACTTTTGTCACTTTTAGTTTTTGACA 58.027 29.630 0.00 0.00 43.65 3.58
54 55 9.187455 TCACTTTTGTCACTTTTAGTTTTTGAC 57.813 29.630 0.00 0.00 37.65 3.18
55 56 9.751542 TTCACTTTTGTCACTTTTAGTTTTTGA 57.248 25.926 0.00 0.00 0.00 2.69
59 60 9.705290 ACATTTCACTTTTGTCACTTTTAGTTT 57.295 25.926 0.00 0.00 0.00 2.66
60 61 9.705290 AACATTTCACTTTTGTCACTTTTAGTT 57.295 25.926 0.00 0.00 0.00 2.24
75 76 8.515414 GCCACTCTAGATTTTAACATTTCACTT 58.485 33.333 0.00 0.00 0.00 3.16
76 77 7.665559 TGCCACTCTAGATTTTAACATTTCACT 59.334 33.333 0.00 0.00 0.00 3.41
77 78 7.816640 TGCCACTCTAGATTTTAACATTTCAC 58.183 34.615 0.00 0.00 0.00 3.18
78 79 7.994425 TGCCACTCTAGATTTTAACATTTCA 57.006 32.000 0.00 0.00 0.00 2.69
90 91 8.579863 GCCAATTTTATTTATGCCACTCTAGAT 58.420 33.333 0.00 0.00 0.00 1.98
91 92 7.559533 TGCCAATTTTATTTATGCCACTCTAGA 59.440 33.333 0.00 0.00 0.00 2.43
92 93 7.715657 TGCCAATTTTATTTATGCCACTCTAG 58.284 34.615 0.00 0.00 0.00 2.43
93 94 7.652524 TGCCAATTTTATTTATGCCACTCTA 57.347 32.000 0.00 0.00 0.00 2.43
94 95 6.543430 TGCCAATTTTATTTATGCCACTCT 57.457 33.333 0.00 0.00 0.00 3.24
95 96 7.608308 TTTGCCAATTTTATTTATGCCACTC 57.392 32.000 0.00 0.00 0.00 3.51
96 97 7.992754 TTTTGCCAATTTTATTTATGCCACT 57.007 28.000 0.00 0.00 0.00 4.00
97 98 9.074443 CATTTTTGCCAATTTTATTTATGCCAC 57.926 29.630 0.00 0.00 0.00 5.01
98 99 7.758528 GCATTTTTGCCAATTTTATTTATGCCA 59.241 29.630 0.00 0.00 0.00 4.92
99 100 7.758528 TGCATTTTTGCCAATTTTATTTATGCC 59.241 29.630 0.00 0.00 34.24 4.40
100 101 8.684973 TGCATTTTTGCCAATTTTATTTATGC 57.315 26.923 0.00 0.00 35.36 3.14
105 106 9.374838 TGTTTTTGCATTTTTGCCAATTTTATT 57.625 22.222 0.00 0.00 0.00 1.40
106 107 8.937634 TGTTTTTGCATTTTTGCCAATTTTAT 57.062 23.077 0.00 0.00 0.00 1.40
107 108 8.650714 GTTGTTTTTGCATTTTTGCCAATTTTA 58.349 25.926 0.00 0.00 0.00 1.52
108 109 7.172019 TGTTGTTTTTGCATTTTTGCCAATTTT 59.828 25.926 0.00 0.00 0.00 1.82
109 110 6.647895 TGTTGTTTTTGCATTTTTGCCAATTT 59.352 26.923 0.00 0.00 0.00 1.82
110 111 6.161381 TGTTGTTTTTGCATTTTTGCCAATT 58.839 28.000 0.00 0.00 0.00 2.32
111 112 5.717119 TGTTGTTTTTGCATTTTTGCCAAT 58.283 29.167 0.00 0.00 0.00 3.16
112 113 5.125100 TGTTGTTTTTGCATTTTTGCCAA 57.875 30.435 0.00 0.00 0.00 4.52
113 114 4.771590 TGTTGTTTTTGCATTTTTGCCA 57.228 31.818 0.00 0.00 0.00 4.92
114 115 6.644191 AAATGTTGTTTTTGCATTTTTGCC 57.356 29.167 0.00 0.00 39.04 4.52
115 116 7.063191 AGGAAAATGTTGTTTTTGCATTTTTGC 59.937 29.630 13.37 2.10 46.38 3.68
116 117 8.463456 AGGAAAATGTTGTTTTTGCATTTTTG 57.537 26.923 13.37 0.00 46.38 2.44
117 118 9.486497 AAAGGAAAATGTTGTTTTTGCATTTTT 57.514 22.222 13.37 0.00 46.38 1.94
119 120 7.758980 GGAAAGGAAAATGTTGTTTTTGCATTT 59.241 29.630 0.00 0.00 42.46 2.32
120 121 7.094032 TGGAAAGGAAAATGTTGTTTTTGCATT 60.094 29.630 0.00 0.00 38.81 3.56
121 122 6.376581 TGGAAAGGAAAATGTTGTTTTTGCAT 59.623 30.769 0.00 0.00 38.81 3.96
122 123 5.707298 TGGAAAGGAAAATGTTGTTTTTGCA 59.293 32.000 4.42 0.00 38.81 4.08
123 124 6.188400 TGGAAAGGAAAATGTTGTTTTTGC 57.812 33.333 0.00 0.00 37.23 3.68
124 125 8.296000 AGTTTGGAAAGGAAAATGTTGTTTTTG 58.704 29.630 0.00 0.00 0.00 2.44
125 126 8.402798 AGTTTGGAAAGGAAAATGTTGTTTTT 57.597 26.923 0.00 0.00 0.00 1.94
126 127 7.994425 AGTTTGGAAAGGAAAATGTTGTTTT 57.006 28.000 0.00 0.00 0.00 2.43
127 128 7.768582 CCTAGTTTGGAAAGGAAAATGTTGTTT 59.231 33.333 0.00 0.00 31.64 2.83
128 129 7.272244 CCTAGTTTGGAAAGGAAAATGTTGTT 58.728 34.615 0.00 0.00 31.64 2.83
129 130 6.183360 CCCTAGTTTGGAAAGGAAAATGTTGT 60.183 38.462 0.00 0.00 31.64 3.32
130 131 6.223120 CCCTAGTTTGGAAAGGAAAATGTTG 58.777 40.000 0.00 0.00 31.64 3.33
131 132 5.306937 CCCCTAGTTTGGAAAGGAAAATGTT 59.693 40.000 0.00 0.00 31.64 2.71
132 133 4.838423 CCCCTAGTTTGGAAAGGAAAATGT 59.162 41.667 0.00 0.00 31.64 2.71
133 134 4.838423 ACCCCTAGTTTGGAAAGGAAAATG 59.162 41.667 0.00 0.00 31.64 2.32
134 135 5.087923 ACCCCTAGTTTGGAAAGGAAAAT 57.912 39.130 0.00 0.00 31.64 1.82
135 136 4.546224 ACCCCTAGTTTGGAAAGGAAAA 57.454 40.909 0.00 0.00 31.64 2.29
136 137 4.666431 ACTACCCCTAGTTTGGAAAGGAAA 59.334 41.667 0.00 0.00 31.64 3.13
137 138 4.245308 ACTACCCCTAGTTTGGAAAGGAA 58.755 43.478 0.00 0.00 31.64 3.36
138 139 3.878086 ACTACCCCTAGTTTGGAAAGGA 58.122 45.455 0.00 0.00 31.64 3.36
139 140 5.028131 TCTACTACCCCTAGTTTGGAAAGG 58.972 45.833 0.00 0.00 34.79 3.11
140 141 6.404708 GTTCTACTACCCCTAGTTTGGAAAG 58.595 44.000 0.00 0.00 34.79 2.62
141 142 5.249163 GGTTCTACTACCCCTAGTTTGGAAA 59.751 44.000 0.00 0.00 34.79 3.13
142 143 4.779489 GGTTCTACTACCCCTAGTTTGGAA 59.221 45.833 0.00 0.00 34.79 3.53
143 144 4.356436 GGTTCTACTACCCCTAGTTTGGA 58.644 47.826 0.00 0.00 34.79 3.53
144 145 4.750021 GGTTCTACTACCCCTAGTTTGG 57.250 50.000 0.00 0.00 34.79 3.28
154 155 4.267536 GGGTGAATTTGGGTTCTACTACC 58.732 47.826 0.00 0.00 37.47 3.18
155 156 4.267536 GGGGTGAATTTGGGTTCTACTAC 58.732 47.826 0.00 0.00 0.00 2.73
156 157 3.054948 CGGGGTGAATTTGGGTTCTACTA 60.055 47.826 0.00 0.00 0.00 1.82
157 158 2.290705 CGGGGTGAATTTGGGTTCTACT 60.291 50.000 0.00 0.00 0.00 2.57
158 159 2.089201 CGGGGTGAATTTGGGTTCTAC 58.911 52.381 0.00 0.00 0.00 2.59
159 160 1.004979 CCGGGGTGAATTTGGGTTCTA 59.995 52.381 0.00 0.00 0.00 2.10
160 161 0.251608 CCGGGGTGAATTTGGGTTCT 60.252 55.000 0.00 0.00 0.00 3.01
161 162 1.884075 GCCGGGGTGAATTTGGGTTC 61.884 60.000 2.18 0.00 0.00 3.62
162 163 1.911269 GCCGGGGTGAATTTGGGTT 60.911 57.895 2.18 0.00 0.00 4.11
163 164 2.283604 GCCGGGGTGAATTTGGGT 60.284 61.111 2.18 0.00 0.00 4.51
164 165 3.448340 CGCCGGGGTGAATTTGGG 61.448 66.667 11.01 0.00 0.00 4.12
165 166 4.128388 GCGCCGGGGTGAATTTGG 62.128 66.667 20.83 0.00 0.00 3.28
166 167 3.369400 TGCGCCGGGGTGAATTTG 61.369 61.111 20.83 0.00 0.00 2.32
167 168 3.370231 GTGCGCCGGGGTGAATTT 61.370 61.111 20.83 0.00 0.00 1.82
168 169 4.652131 TGTGCGCCGGGGTGAATT 62.652 61.111 20.83 0.00 0.00 2.17
176 177 2.832818 CTTTCAATCGTGTGCGCCGG 62.833 60.000 4.18 0.00 38.14 6.13
177 178 1.509787 CTTTCAATCGTGTGCGCCG 60.510 57.895 4.18 0.37 38.14 6.46
178 179 0.447801 ATCTTTCAATCGTGTGCGCC 59.552 50.000 4.18 0.00 38.14 6.53
179 180 1.802839 GATCTTTCAATCGTGTGCGC 58.197 50.000 0.00 0.00 38.14 6.09
180 181 1.653609 TCGATCTTTCAATCGTGTGCG 59.346 47.619 6.22 0.00 46.64 5.34
181 182 2.029728 CCTCGATCTTTCAATCGTGTGC 59.970 50.000 6.22 0.00 46.64 4.57
182 183 2.029728 GCCTCGATCTTTCAATCGTGTG 59.970 50.000 6.22 1.11 46.64 3.82
183 184 2.271800 GCCTCGATCTTTCAATCGTGT 58.728 47.619 6.22 0.00 46.64 4.49
184 185 2.270923 TGCCTCGATCTTTCAATCGTG 58.729 47.619 6.22 4.20 46.64 4.35
185 186 2.672961 TGCCTCGATCTTTCAATCGT 57.327 45.000 6.22 0.00 46.64 3.73
187 188 2.615447 TGCATGCCTCGATCTTTCAATC 59.385 45.455 16.68 0.00 0.00 2.67
188 189 2.357009 GTGCATGCCTCGATCTTTCAAT 59.643 45.455 16.68 0.00 0.00 2.57
189 190 1.739466 GTGCATGCCTCGATCTTTCAA 59.261 47.619 16.68 0.00 0.00 2.69
190 191 1.338960 TGTGCATGCCTCGATCTTTCA 60.339 47.619 16.68 0.00 0.00 2.69
191 192 1.372582 TGTGCATGCCTCGATCTTTC 58.627 50.000 16.68 0.00 0.00 2.62
192 193 1.825090 TTGTGCATGCCTCGATCTTT 58.175 45.000 16.68 0.00 0.00 2.52
193 194 1.674441 CATTGTGCATGCCTCGATCTT 59.326 47.619 16.68 0.00 0.00 2.40
194 195 1.306148 CATTGTGCATGCCTCGATCT 58.694 50.000 16.68 0.00 0.00 2.75
195 196 3.839654 CATTGTGCATGCCTCGATC 57.160 52.632 16.68 0.00 0.00 3.69
216 217 0.948678 CCAATAATTACACCGGCGGG 59.051 55.000 31.78 21.03 40.11 6.13
217 218 0.309612 GCCAATAATTACACCGGCGG 59.690 55.000 27.06 27.06 0.00 6.13
218 219 1.002900 CTGCCAATAATTACACCGGCG 60.003 52.381 0.00 0.00 42.57 6.46
219 220 1.336755 CCTGCCAATAATTACACCGGC 59.663 52.381 0.00 8.59 40.02 6.13
220 221 2.878406 CTCCTGCCAATAATTACACCGG 59.122 50.000 0.00 0.00 0.00 5.28
221 222 3.804036 TCTCCTGCCAATAATTACACCG 58.196 45.455 0.00 0.00 0.00 4.94
222 223 5.827797 TCAATCTCCTGCCAATAATTACACC 59.172 40.000 0.00 0.00 0.00 4.16
223 224 6.514048 GCTCAATCTCCTGCCAATAATTACAC 60.514 42.308 0.00 0.00 0.00 2.90
224 225 5.532406 GCTCAATCTCCTGCCAATAATTACA 59.468 40.000 0.00 0.00 0.00 2.41
225 226 5.532406 TGCTCAATCTCCTGCCAATAATTAC 59.468 40.000 0.00 0.00 0.00 1.89
226 227 5.693961 TGCTCAATCTCCTGCCAATAATTA 58.306 37.500 0.00 0.00 0.00 1.40
227 228 4.539726 TGCTCAATCTCCTGCCAATAATT 58.460 39.130 0.00 0.00 0.00 1.40
228 229 4.174704 TGCTCAATCTCCTGCCAATAAT 57.825 40.909 0.00 0.00 0.00 1.28
229 230 3.650281 TGCTCAATCTCCTGCCAATAA 57.350 42.857 0.00 0.00 0.00 1.40
230 231 3.054139 ACTTGCTCAATCTCCTGCCAATA 60.054 43.478 0.00 0.00 0.00 1.90
231 232 2.291411 ACTTGCTCAATCTCCTGCCAAT 60.291 45.455 0.00 0.00 0.00 3.16
232 233 1.074405 ACTTGCTCAATCTCCTGCCAA 59.926 47.619 0.00 0.00 0.00 4.52
233 234 0.694771 ACTTGCTCAATCTCCTGCCA 59.305 50.000 0.00 0.00 0.00 4.92
234 235 2.559440 CTACTTGCTCAATCTCCTGCC 58.441 52.381 0.00 0.00 0.00 4.85
235 236 2.559440 CCTACTTGCTCAATCTCCTGC 58.441 52.381 0.00 0.00 0.00 4.85
236 237 2.093288 TGCCTACTTGCTCAATCTCCTG 60.093 50.000 0.00 0.00 0.00 3.86
237 238 2.093235 GTGCCTACTTGCTCAATCTCCT 60.093 50.000 0.00 0.00 0.00 3.69
238 239 2.284190 GTGCCTACTTGCTCAATCTCC 58.716 52.381 0.00 0.00 0.00 3.71
239 240 1.929836 CGTGCCTACTTGCTCAATCTC 59.070 52.381 0.00 0.00 0.00 2.75
240 241 1.276421 ACGTGCCTACTTGCTCAATCT 59.724 47.619 0.00 0.00 0.00 2.40
241 242 1.726853 ACGTGCCTACTTGCTCAATC 58.273 50.000 0.00 0.00 0.00 2.67
242 243 2.185004 AACGTGCCTACTTGCTCAAT 57.815 45.000 0.00 0.00 0.00 2.57
243 244 2.409975 GTAACGTGCCTACTTGCTCAA 58.590 47.619 0.00 0.00 0.00 3.02
244 245 1.667756 CGTAACGTGCCTACTTGCTCA 60.668 52.381 0.00 0.00 0.00 4.26
245 246 0.989890 CGTAACGTGCCTACTTGCTC 59.010 55.000 0.00 0.00 0.00 4.26
246 247 0.316204 ACGTAACGTGCCTACTTGCT 59.684 50.000 0.00 0.00 39.18 3.91
247 248 2.818350 ACGTAACGTGCCTACTTGC 58.182 52.632 0.00 0.00 39.18 4.01
257 258 1.652124 GTTCGATCATGCACGTAACGT 59.348 47.619 10.15 0.00 42.36 3.99
258 259 1.006391 GGTTCGATCATGCACGTAACG 60.006 52.381 10.15 0.00 0.00 3.18
259 260 2.029244 CAGGTTCGATCATGCACGTAAC 59.971 50.000 10.15 11.65 0.00 2.50
260 261 2.267426 CAGGTTCGATCATGCACGTAA 58.733 47.619 10.15 3.18 0.00 3.18
261 262 1.470805 CCAGGTTCGATCATGCACGTA 60.471 52.381 2.65 0.34 0.00 3.57
262 263 0.740868 CCAGGTTCGATCATGCACGT 60.741 55.000 2.65 0.00 0.00 4.49
263 264 0.460109 TCCAGGTTCGATCATGCACG 60.460 55.000 2.65 5.29 0.00 5.34
264 265 1.293924 CTCCAGGTTCGATCATGCAC 58.706 55.000 2.65 0.00 0.00 4.57
265 266 0.462581 GCTCCAGGTTCGATCATGCA 60.463 55.000 2.65 0.00 0.00 3.96
266 267 1.162800 GGCTCCAGGTTCGATCATGC 61.163 60.000 2.65 0.00 0.00 4.06
267 268 0.877649 CGGCTCCAGGTTCGATCATG 60.878 60.000 1.20 1.20 0.00 3.07
268 269 1.443407 CGGCTCCAGGTTCGATCAT 59.557 57.895 0.00 0.00 0.00 2.45
269 270 2.892640 CGGCTCCAGGTTCGATCA 59.107 61.111 0.00 0.00 0.00 2.92
270 271 2.586357 GCGGCTCCAGGTTCGATC 60.586 66.667 0.00 0.00 0.00 3.69
271 272 2.735772 ATGCGGCTCCAGGTTCGAT 61.736 57.895 0.00 0.00 0.00 3.59
272 273 3.390521 ATGCGGCTCCAGGTTCGA 61.391 61.111 0.00 0.00 0.00 3.71
273 274 3.197790 CATGCGGCTCCAGGTTCG 61.198 66.667 0.00 0.00 0.00 3.95
274 275 3.512516 GCATGCGGCTCCAGGTTC 61.513 66.667 0.00 0.00 40.25 3.62
286 287 2.512286 TGGACGCAGCTAGCATGC 60.512 61.111 18.83 20.74 46.13 4.06
287 288 0.742281 AAGTGGACGCAGCTAGCATG 60.742 55.000 18.83 13.11 46.13 4.06
288 289 0.460987 GAAGTGGACGCAGCTAGCAT 60.461 55.000 18.83 0.00 46.13 3.79
289 290 1.079819 GAAGTGGACGCAGCTAGCA 60.080 57.895 18.83 0.00 46.13 3.49
290 291 0.804156 GAGAAGTGGACGCAGCTAGC 60.804 60.000 6.62 6.62 40.87 3.42
291 292 0.524392 CGAGAAGTGGACGCAGCTAG 60.524 60.000 0.00 0.00 0.00 3.42
292 293 1.241990 ACGAGAAGTGGACGCAGCTA 61.242 55.000 0.00 0.00 0.00 3.32
293 294 1.241990 TACGAGAAGTGGACGCAGCT 61.242 55.000 0.00 0.00 0.00 4.24
294 295 1.071567 GTACGAGAAGTGGACGCAGC 61.072 60.000 0.00 0.00 0.00 5.25
295 296 0.793478 CGTACGAGAAGTGGACGCAG 60.793 60.000 10.44 0.00 29.59 5.18
296 297 1.208358 CGTACGAGAAGTGGACGCA 59.792 57.895 10.44 0.00 29.59 5.24
297 298 1.063951 CACGTACGAGAAGTGGACGC 61.064 60.000 24.41 0.00 38.10 5.19
298 299 2.997345 CACGTACGAGAAGTGGACG 58.003 57.895 24.41 0.00 39.83 4.79
302 303 0.594602 TCCACCACGTACGAGAAGTG 59.405 55.000 24.41 20.32 37.29 3.16
303 304 0.879765 CTCCACCACGTACGAGAAGT 59.120 55.000 24.41 10.16 0.00 3.01
304 305 0.456312 GCTCCACCACGTACGAGAAG 60.456 60.000 24.41 9.63 0.00 2.85
305 306 1.582968 GCTCCACCACGTACGAGAA 59.417 57.895 24.41 0.00 0.00 2.87
306 307 2.338015 GGCTCCACCACGTACGAGA 61.338 63.158 24.41 9.12 38.86 4.04
307 308 2.181021 GGCTCCACCACGTACGAG 59.819 66.667 24.41 14.76 38.86 4.18
308 309 3.740397 CGGCTCCACCACGTACGA 61.740 66.667 24.41 0.00 39.03 3.43
309 310 4.047059 ACGGCTCCACCACGTACG 62.047 66.667 15.01 15.01 39.30 3.67
310 311 2.431942 CACGGCTCCACCACGTAC 60.432 66.667 0.00 0.00 39.02 3.67
311 312 4.367023 GCACGGCTCCACCACGTA 62.367 66.667 0.00 0.00 39.02 3.57
314 315 4.722700 ATGGCACGGCTCCACCAC 62.723 66.667 0.00 0.00 39.03 4.16
315 316 4.408821 GATGGCACGGCTCCACCA 62.409 66.667 0.00 0.00 39.03 4.17
317 318 4.760047 ACGATGGCACGGCTCCAC 62.760 66.667 12.66 0.00 36.26 4.02
318 319 3.950794 GAACGATGGCACGGCTCCA 62.951 63.158 12.66 0.00 38.09 3.86
319 320 3.195698 GAACGATGGCACGGCTCC 61.196 66.667 12.66 0.00 37.61 4.70
320 321 3.554692 CGAACGATGGCACGGCTC 61.555 66.667 12.66 8.34 37.61 4.70
323 324 4.444838 TCCCGAACGATGGCACGG 62.445 66.667 6.51 6.51 44.16 4.94
324 325 2.885644 CTCCCGAACGATGGCACG 60.886 66.667 7.71 7.71 39.31 5.34
325 326 2.511600 CCTCCCGAACGATGGCAC 60.512 66.667 0.00 0.00 0.00 5.01
326 327 3.781307 CCCTCCCGAACGATGGCA 61.781 66.667 0.00 0.00 0.00 4.92
327 328 3.735037 GACCCTCCCGAACGATGGC 62.735 68.421 0.00 0.00 0.00 4.40
328 329 1.686325 ATGACCCTCCCGAACGATGG 61.686 60.000 0.00 0.00 0.00 3.51
329 330 0.249489 GATGACCCTCCCGAACGATG 60.249 60.000 0.00 0.00 0.00 3.84
330 331 1.735376 CGATGACCCTCCCGAACGAT 61.735 60.000 0.00 0.00 0.00 3.73
331 332 2.412323 CGATGACCCTCCCGAACGA 61.412 63.158 0.00 0.00 0.00 3.85
332 333 2.104331 CGATGACCCTCCCGAACG 59.896 66.667 0.00 0.00 0.00 3.95
333 334 2.202892 GCGATGACCCTCCCGAAC 60.203 66.667 0.00 0.00 0.00 3.95
334 335 3.467226 GGCGATGACCCTCCCGAA 61.467 66.667 0.00 0.00 0.00 4.30
335 336 4.458829 AGGCGATGACCCTCCCGA 62.459 66.667 0.00 0.00 0.00 5.14
336 337 3.917760 GAGGCGATGACCCTCCCG 61.918 72.222 0.00 0.00 42.46 5.14
337 338 1.910580 TTTGAGGCGATGACCCTCCC 61.911 60.000 5.10 0.00 46.69 4.30
338 339 0.181350 ATTTGAGGCGATGACCCTCC 59.819 55.000 5.10 0.00 46.69 4.30
339 340 5.666250 ATCGATTTGAGGCGATGACCCTC 62.666 52.174 0.00 0.57 44.64 4.30
340 341 0.179073 CGATTTGAGGCGATGACCCT 60.179 55.000 0.00 0.00 34.77 4.34
341 342 0.179084 TCGATTTGAGGCGATGACCC 60.179 55.000 0.00 0.00 0.00 4.46
342 343 1.871080 ATCGATTTGAGGCGATGACC 58.129 50.000 0.00 0.00 44.64 4.02
347 348 0.175531 TGCTCATCGATTTGAGGCGA 59.824 50.000 15.88 0.00 42.78 5.54
348 349 0.302890 GTGCTCATCGATTTGAGGCG 59.697 55.000 15.88 0.00 42.78 5.52
349 350 1.661341 AGTGCTCATCGATTTGAGGC 58.339 50.000 15.88 9.72 42.78 4.70
350 351 4.624882 GCTATAGTGCTCATCGATTTGAGG 59.375 45.833 15.88 0.00 42.78 3.86
351 352 5.468592 AGCTATAGTGCTCATCGATTTGAG 58.531 41.667 11.00 11.00 44.87 3.02
352 353 5.459536 AGCTATAGTGCTCATCGATTTGA 57.540 39.130 0.00 0.00 39.34 2.69
353 354 6.183360 GCTAAGCTATAGTGCTCATCGATTTG 60.183 42.308 0.00 0.00 43.24 2.32
354 355 5.866633 GCTAAGCTATAGTGCTCATCGATTT 59.133 40.000 0.00 0.00 43.24 2.17
355 356 5.047731 TGCTAAGCTATAGTGCTCATCGATT 60.048 40.000 0.00 0.00 43.24 3.34
356 357 4.460731 TGCTAAGCTATAGTGCTCATCGAT 59.539 41.667 0.84 0.00 43.24 3.59
357 358 3.821033 TGCTAAGCTATAGTGCTCATCGA 59.179 43.478 0.84 0.00 43.24 3.59
358 359 4.166187 TGCTAAGCTATAGTGCTCATCG 57.834 45.455 0.84 0.00 43.24 3.84
359 360 5.537188 AGTTGCTAAGCTATAGTGCTCATC 58.463 41.667 0.84 0.00 43.24 2.92
360 361 5.543507 AGTTGCTAAGCTATAGTGCTCAT 57.456 39.130 0.84 0.00 43.24 2.90
361 362 5.344743 AAGTTGCTAAGCTATAGTGCTCA 57.655 39.130 0.84 0.00 43.24 4.26
362 363 4.747605 GGAAGTTGCTAAGCTATAGTGCTC 59.252 45.833 0.84 0.00 43.24 4.26
363 364 4.407296 AGGAAGTTGCTAAGCTATAGTGCT 59.593 41.667 0.00 0.00 46.40 4.40
364 365 4.698575 AGGAAGTTGCTAAGCTATAGTGC 58.301 43.478 0.00 2.44 0.00 4.40
365 366 7.042389 GCTTTAGGAAGTTGCTAAGCTATAGTG 60.042 40.741 20.67 8.43 31.96 2.74
366 367 6.987404 GCTTTAGGAAGTTGCTAAGCTATAGT 59.013 38.462 20.67 0.00 31.96 2.12
367 368 6.986817 TGCTTTAGGAAGTTGCTAAGCTATAG 59.013 38.462 24.48 17.37 31.96 1.31
368 369 6.761714 GTGCTTTAGGAAGTTGCTAAGCTATA 59.238 38.462 24.48 10.64 31.96 1.31
369 370 5.586643 GTGCTTTAGGAAGTTGCTAAGCTAT 59.413 40.000 24.48 0.00 31.96 2.97
370 371 4.935808 GTGCTTTAGGAAGTTGCTAAGCTA 59.064 41.667 24.48 15.54 31.96 3.32
371 372 3.753797 GTGCTTTAGGAAGTTGCTAAGCT 59.246 43.478 24.48 0.00 31.96 3.74
372 373 3.424962 CGTGCTTTAGGAAGTTGCTAAGC 60.425 47.826 20.92 20.92 31.96 3.09
373 374 3.424962 GCGTGCTTTAGGAAGTTGCTAAG 60.425 47.826 15.34 11.37 31.96 2.18
374 375 2.482721 GCGTGCTTTAGGAAGTTGCTAA 59.517 45.455 12.36 12.36 35.25 3.09
375 376 2.073816 GCGTGCTTTAGGAAGTTGCTA 58.926 47.619 0.00 0.00 35.25 3.49
376 377 0.875059 GCGTGCTTTAGGAAGTTGCT 59.125 50.000 1.39 1.39 35.25 3.91
377 378 0.109735 GGCGTGCTTTAGGAAGTTGC 60.110 55.000 0.00 0.00 35.25 4.17
378 379 1.234821 TGGCGTGCTTTAGGAAGTTG 58.765 50.000 0.00 0.00 35.25 3.16
379 380 1.607148 GTTGGCGTGCTTTAGGAAGTT 59.393 47.619 0.00 0.00 35.25 2.66
380 381 1.235724 GTTGGCGTGCTTTAGGAAGT 58.764 50.000 0.00 0.00 35.25 3.01
381 382 1.197721 CTGTTGGCGTGCTTTAGGAAG 59.802 52.381 0.00 0.00 35.92 3.46
382 383 1.202710 TCTGTTGGCGTGCTTTAGGAA 60.203 47.619 0.00 0.00 0.00 3.36
383 384 0.394938 TCTGTTGGCGTGCTTTAGGA 59.605 50.000 0.00 0.00 0.00 2.94
384 385 1.453155 ATCTGTTGGCGTGCTTTAGG 58.547 50.000 0.00 0.00 0.00 2.69
385 386 3.932710 TCTTATCTGTTGGCGTGCTTTAG 59.067 43.478 0.00 0.00 0.00 1.85
386 387 3.932822 TCTTATCTGTTGGCGTGCTTTA 58.067 40.909 0.00 0.00 0.00 1.85
387 388 2.778299 TCTTATCTGTTGGCGTGCTTT 58.222 42.857 0.00 0.00 0.00 3.51
388 389 2.472695 TCTTATCTGTTGGCGTGCTT 57.527 45.000 0.00 0.00 0.00 3.91
389 390 2.555199 GATCTTATCTGTTGGCGTGCT 58.445 47.619 0.00 0.00 0.00 4.40
390 391 1.599542 GGATCTTATCTGTTGGCGTGC 59.400 52.381 0.00 0.00 0.00 5.34
391 392 3.126831 GAGGATCTTATCTGTTGGCGTG 58.873 50.000 0.00 0.00 0.00 5.34
392 393 2.223829 CGAGGATCTTATCTGTTGGCGT 60.224 50.000 0.00 0.00 0.00 5.68
393 394 2.223829 ACGAGGATCTTATCTGTTGGCG 60.224 50.000 0.00 0.00 0.00 5.69
394 395 3.126831 CACGAGGATCTTATCTGTTGGC 58.873 50.000 0.00 0.00 0.00 4.52
395 396 3.384789 TCCACGAGGATCTTATCTGTTGG 59.615 47.826 0.00 0.00 39.61 3.77
396 397 4.655762 TCCACGAGGATCTTATCTGTTG 57.344 45.455 0.00 0.00 39.61 3.33
408 409 0.548031 ACCCTATACGTCCACGAGGA 59.452 55.000 6.03 0.00 43.21 3.71
409 410 0.666913 CACCCTATACGTCCACGAGG 59.333 60.000 6.03 2.27 43.02 4.63
410 411 1.065102 CACACCCTATACGTCCACGAG 59.935 57.143 6.03 0.00 43.02 4.18
411 412 1.097232 CACACCCTATACGTCCACGA 58.903 55.000 6.03 0.00 43.02 4.35
412 413 0.813184 ACACACCCTATACGTCCACG 59.187 55.000 0.00 0.00 46.33 4.94
413 414 2.997986 CAAACACACCCTATACGTCCAC 59.002 50.000 0.00 0.00 0.00 4.02
414 415 2.027929 CCAAACACACCCTATACGTCCA 60.028 50.000 0.00 0.00 0.00 4.02
897 958 4.410400 GCGGGGGTGCTGCTTACT 62.410 66.667 0.00 0.00 0.00 2.24
913 978 0.038310 ACTGAGCTAACAAAGGGGGC 59.962 55.000 0.00 0.00 0.00 5.80
1463 1532 1.065709 GGCTTCCACGAATCTTGGGTA 60.066 52.381 5.92 0.00 34.56 3.69
1507 1576 8.791675 TGAAAAGTGTATATTGTCAATGCTCAA 58.208 29.630 8.39 0.00 0.00 3.02
1625 1696 4.192317 CCTAGGAATTCTGGCAGTAACAC 58.808 47.826 15.27 3.90 0.00 3.32
1629 1700 3.451178 GTGACCTAGGAATTCTGGCAGTA 59.549 47.826 17.98 5.11 0.00 2.74
1639 1710 2.499289 CTGCAGACTGTGACCTAGGAAT 59.501 50.000 17.98 0.00 0.00 3.01
1749 1820 2.596851 AACATGCGCTGACCCCTCT 61.597 57.895 9.73 0.00 0.00 3.69
1766 1837 3.748048 GCTGTCAGTGAGAATGTTAGCAA 59.252 43.478 0.93 0.00 32.18 3.91
1843 1914 1.524621 GCCGACATGCATAGCCAGT 60.525 57.895 0.00 0.00 0.00 4.00
2145 2238 0.323302 TTACAACATCGCCAGGCTCA 59.677 50.000 10.54 0.00 0.00 4.26
2153 2246 2.006772 CCGGAGCTTACAACATCGC 58.993 57.895 0.00 0.00 0.00 4.58
2173 2266 2.596346 TGTCAAATGCCTCCACACATT 58.404 42.857 0.00 0.00 38.11 2.71
2229 2323 2.772077 TTGTTAAGCCACATCGCCTA 57.228 45.000 0.00 0.00 0.00 3.93
2428 2616 4.680171 AGCGCCATCTACTTAAACAAAC 57.320 40.909 2.29 0.00 0.00 2.93


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.