AutoCloner

Multiple sequence alignment - TraesCS4D01G350300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS4D01G350300	chr4D	100.000	3174	0	0	1	3174	502580734	502577561	0.000000e+00	5862.0
1	TraesCS4D01G350300	chr4D	100.000	1260	0	0	3681	4940	502577054	502575795	0.000000e+00	2327.0
2	TraesCS4D01G350300	chr4B	86.623	2766	170	80	452	3122	646976721	646974061	0.000000e+00	2874.0
3	TraesCS4D01G350300	chr4B	83.525	1305	83	57	3681	4940	646973990	646972773	0.000000e+00	1098.0
4	TraesCS4D01G350300	chr5A	89.771	1750	95	36	1478	3174	685997270	685995552	0.000000e+00	2163.0
5	TraesCS4D01G350300	chr5A	87.646	858	58	29	485	1314	685998175	685997338	0.000000e+00	953.0
6	TraesCS4D01G350300	chr5A	85.017	861	47	34	3683	4500	685995508	685994687	0.000000e+00	800.0
7	TraesCS4D01G350300	chr5A	89.154	461	23	14	4485	4940	685994665	685994227	2.600000e-152	549.0
8	TraesCS4D01G350300	chr6B	86.010	386	33	8	6	382	439019706	439019333	1.290000e-105	394.0
9	TraesCS4D01G350300	chr7D	86.059	373	38	5	1	370	107796608	107796969	6.000000e-104	388.0
10	TraesCS4D01G350300	chr2B	86.705	346	34	8	1	346	88247080	88247413	1.680000e-99	374.0
11	TraesCS4D01G350300	chr2B	85.333	375	38	8	1	369	90295722	90295359	6.040000e-99	372.0
12	TraesCS4D01G350300	chr3D	86.416	346	35	6	1	346	496174746	496175079	7.810000e-98	368.0
13	TraesCS4D01G350300	chr2A	85.106	376	39	8	1	370	673192258	673192622	7.810000e-98	368.0
14	TraesCS4D01G350300	chr2D	84.777	381	40	11	12	386	591299930	591300298	2.810000e-97	366.0
15	TraesCS4D01G350300	chr2D	83.673	392	49	3	1	386	59150707	59151089	6.080000e-94	355.0
16	TraesCS4D01G350300	chrUn	84.615	377	41	7	1	371	25038012	25037647	4.700000e-95	359.0
17	TraesCS4D01G350300	chrUn	83.158	95	15	1	2280	2374	16067478	16067571	8.810000e-13	86.1
18	TraesCS4D01G350300	chrUn	83.158	95	15	1	2280	2374	227390988	227391081	8.810000e-13	86.1
19	TraesCS4D01G350300	chr1A	75.765	425	78	21	1956	2374	341873353	341872948	1.820000e-44	191.0
20	TraesCS4D01G350300	chr1A	79.851	268	44	8	2369	2631	341872835	341872573	2.350000e-43	187.0
21	TraesCS4D01G350300	chr1D	81.356	177	31	2	2199	2374	258979381	258979556	5.150000e-30	143.0
22	TraesCS4D01G350300	chr1B	80.791	177	32	2	2199	2374	353946920	353946745	2.400000e-28	137.0
23	TraesCS4D01G350300	chr7B	84.211	95	14	1	2280	2374	437800832	437800739	1.890000e-14	91.6
24	TraesCS4D01G350300	chr7B	83.158	95	16	0	2280	2374	413036725	413036631	2.450000e-13	87.9

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS4D01G350300	chr4D	502575795	502580734	4939	True	4094.50	5862	100.000	1	4940	2	chr4D.!!$R1	4939
1	TraesCS4D01G350300	chr4B	646972773	646976721	3948	True	1986.00	2874	85.074	452	4940	2	chr4B.!!$R1	4488
2	TraesCS4D01G350300	chr5A	685994227	685998175	3948	True	1116.25	2163	87.897	485	4940	4	chr5A.!!$R1	4455

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
510	511	0.034089	GCTTGGGGGAATGCAGTAGT	60.034	55.0	0.00	0.00	0.00	2.73	F
993	1021	0.930742	GCCGCTCGATCGTAGAACAG	60.931	60.0	15.94	4.89	43.58	3.16	F
2199	2322	0.032952	TCGTCTTCTTGGTTGGTCCG	59.967	55.0	0.00	0.00	39.52	4.79	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Hairpin	End Stability	Orientation
1385	1450	0.453282	CCAATGAAACAGCGAGCACG	60.453	55.0	0.00	42.93	5.34	R
2219	2342	0.523966	CGCCGGAGATGAGGTAGATC	59.476	60.0	5.05	0.00	2.75	R
4096	4281	0.179045	CCTAACCAATCAGGCCGAGG	60.179	60.0	0.00	43.14	4.63	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
27	28	3.880846	GCCTCCGCCGCAAGAATG	61.881	66.667	0.00	0.00	43.02	2.67
28	29	2.125147	CCTCCGCCGCAAGAATGA	60.125	61.111	0.00	0.00	43.02	2.57
29	30	2.464459	CCTCCGCCGCAAGAATGAC	61.464	63.158	0.00	0.00	43.02	3.06
30	31	1.741401	CTCCGCCGCAAGAATGACA	60.741	57.895	0.00	0.00	43.02	3.58
31	32	1.298157	CTCCGCCGCAAGAATGACAA	61.298	55.000	0.00	0.00	43.02	3.18
32	33	1.135315	CCGCCGCAAGAATGACAAG	59.865	57.895	0.00	0.00	43.02	3.16
33	34	1.298157	CCGCCGCAAGAATGACAAGA	61.298	55.000	0.00	0.00	43.02	3.02
34	35	0.179215	CGCCGCAAGAATGACAAGAC	60.179	55.000	0.00	0.00	43.02	3.01
35	36	0.179215	GCCGCAAGAATGACAAGACG	60.179	55.000	0.00	0.00	43.02	4.18
36	37	0.179215	CCGCAAGAATGACAAGACGC	60.179	55.000	0.00	0.00	43.02	5.19
37	38	0.792640	CGCAAGAATGACAAGACGCT	59.207	50.000	0.00	0.00	43.02	5.07
38	39	1.201855	CGCAAGAATGACAAGACGCTC	60.202	52.381	0.00	0.00	43.02	5.03
39	40	1.129437	GCAAGAATGACAAGACGCTCC	59.871	52.381	0.00	0.00	0.00	4.70
40	41	1.391485	CAAGAATGACAAGACGCTCCG	59.609	52.381	0.00	0.00	0.00	4.63
41	42	0.888619	AGAATGACAAGACGCTCCGA	59.111	50.000	0.00	0.00	0.00	4.55
42	43	0.992802	GAATGACAAGACGCTCCGAC	59.007	55.000	0.00	0.00	0.00	4.79
43	44	0.603569	AATGACAAGACGCTCCGACT	59.396	50.000	0.00	0.00	32.98	4.18
44	45	0.171455	ATGACAAGACGCTCCGACTC	59.829	55.000	0.00	0.00	30.15	3.36
45	46	1.512310	GACAAGACGCTCCGACTCG	60.512	63.158	0.00	0.00	30.15	4.18
46	47	2.876645	CAAGACGCTCCGACTCGC	60.877	66.667	0.00	0.00	30.15	5.03
47	48	4.117661	AAGACGCTCCGACTCGCC	62.118	66.667	0.00	0.00	30.15	5.54
49	50	4.194720	GACGCTCCGACTCGCCAT	62.195	66.667	0.00	0.00	0.00	4.40
50	51	4.194720	ACGCTCCGACTCGCCATC	62.195	66.667	0.00	0.00	0.00	3.51
52	53	3.889044	GCTCCGACTCGCCATCGA	61.889	66.667	4.63	0.00	42.25	3.59
60	61	2.180769	TCGCCATCGAGTTGTCGG	59.819	61.111	0.00	0.00	46.80	4.79
61	62	2.180769	CGCCATCGAGTTGTCGGA	59.819	61.111	0.00	0.00	46.80	4.55
62	63	1.874019	CGCCATCGAGTTGTCGGAG	60.874	63.158	0.00	0.00	46.80	4.63
63	64	2.167861	GCCATCGAGTTGTCGGAGC	61.168	63.158	0.00	0.00	46.80	4.70
64	65	1.874019	CCATCGAGTTGTCGGAGCG	60.874	63.158	0.00	0.00	46.80	5.03
65	66	1.154016	CATCGAGTTGTCGGAGCGT	60.154	57.895	0.00	0.00	46.80	5.07
66	67	1.154016	ATCGAGTTGTCGGAGCGTG	60.154	57.895	0.00	0.00	46.80	5.34
67	68	1.583495	ATCGAGTTGTCGGAGCGTGA	61.583	55.000	0.00	0.00	46.80	4.35
68	69	1.797933	CGAGTTGTCGGAGCGTGAG	60.798	63.158	0.00	0.00	42.87	3.51
69	70	1.444553	GAGTTGTCGGAGCGTGAGG	60.445	63.158	0.00	0.00	0.00	3.86
70	71	3.112709	GTTGTCGGAGCGTGAGGC	61.113	66.667	0.00	0.00	44.05	4.70
79	80	3.744559	GCGTGAGGCAAACAAGGA	58.255	55.556	0.00	0.00	42.87	3.36
80	81	1.576421	GCGTGAGGCAAACAAGGAG	59.424	57.895	0.00	0.00	42.87	3.69
81	82	1.856265	GCGTGAGGCAAACAAGGAGG	61.856	60.000	0.00	0.00	42.87	4.30
82	83	1.856265	CGTGAGGCAAACAAGGAGGC	61.856	60.000	0.00	0.00	0.00	4.70
83	84	1.600636	TGAGGCAAACAAGGAGGCG	60.601	57.895	0.00	0.00	0.00	5.52
84	85	2.282462	AGGCAAACAAGGAGGCGG	60.282	61.111	0.00	0.00	0.00	6.13
85	86	4.056125	GGCAAACAAGGAGGCGGC	62.056	66.667	0.00	0.00	0.00	6.53
86	87	4.404654	GCAAACAAGGAGGCGGCG	62.405	66.667	0.51	0.51	0.00	6.46
87	88	3.737172	CAAACAAGGAGGCGGCGG	61.737	66.667	9.78	0.00	0.00	6.13
121	122	4.069232	TGCGAAGGAGCAGGACCG	62.069	66.667	0.00	0.00	42.92	4.79
123	124	4.821589	CGAAGGAGCAGGACCGCC	62.822	72.222	4.93	0.00	0.00	6.13
147	148	4.783621	GCAGGCTGTCGGGCATGA	62.784	66.667	17.16	0.00	45.28	3.07
148	149	2.513204	CAGGCTGTCGGGCATGAG	60.513	66.667	6.28	0.00	45.28	2.90
149	150	3.790437	AGGCTGTCGGGCATGAGG	61.790	66.667	8.11	0.00	43.56	3.86
150	151	4.101448	GGCTGTCGGGCATGAGGT	62.101	66.667	0.00	0.00	40.53	3.85
151	152	2.821366	GCTGTCGGGCATGAGGTG	60.821	66.667	0.00	0.00	0.00	4.00
160	161	2.580815	CATGAGGTGCAGCTCCGA	59.419	61.111	35.89	22.91	0.00	4.55
161	162	1.812922	CATGAGGTGCAGCTCCGAC	60.813	63.158	35.89	17.77	0.00	4.79
162	163	1.986757	ATGAGGTGCAGCTCCGACT	60.987	57.895	35.89	19.13	0.00	4.18
163	164	1.954362	ATGAGGTGCAGCTCCGACTC	61.954	60.000	35.89	16.92	0.00	3.36
164	165	3.363844	GAGGTGCAGCTCCGACTCC	62.364	68.421	31.17	8.63	0.00	3.85
165	166	4.803426	GGTGCAGCTCCGACTCCG	62.803	72.222	9.07	0.00	0.00	4.63
166	167	3.749064	GTGCAGCTCCGACTCCGA	61.749	66.667	0.00	0.00	38.22	4.55
167	168	3.749064	TGCAGCTCCGACTCCGAC	61.749	66.667	0.00	0.00	38.22	4.79
168	169	3.444805	GCAGCTCCGACTCCGACT	61.445	66.667	0.00	0.00	38.22	4.18
169	170	2.995872	GCAGCTCCGACTCCGACTT	61.996	63.158	0.00	0.00	38.22	3.01
170	171	1.153939	CAGCTCCGACTCCGACTTG	60.154	63.158	0.00	0.00	38.22	3.16
171	172	1.303398	AGCTCCGACTCCGACTTGA	60.303	57.895	0.00	0.00	38.22	3.02
172	173	0.681564	AGCTCCGACTCCGACTTGAT	60.682	55.000	0.00	0.00	38.22	2.57
173	174	0.526524	GCTCCGACTCCGACTTGATG	60.527	60.000	0.00	0.00	38.22	3.07
174	175	0.101399	CTCCGACTCCGACTTGATGG	59.899	60.000	0.00	0.00	38.22	3.51
175	176	0.323087	TCCGACTCCGACTTGATGGA	60.323	55.000	0.00	0.00	38.22	3.41
176	177	0.179134	CCGACTCCGACTTGATGGAC	60.179	60.000	0.00	0.00	38.22	4.02
177	178	0.523546	CGACTCCGACTTGATGGACG	60.524	60.000	0.00	0.00	38.22	4.79
178	179	0.809385	GACTCCGACTTGATGGACGA	59.191	55.000	0.00	0.00	0.00	4.20
179	180	0.526662	ACTCCGACTTGATGGACGAC	59.473	55.000	0.00	0.00	0.00	4.34
180	181	0.811915	CTCCGACTTGATGGACGACT	59.188	55.000	0.00	0.00	0.00	4.18
181	182	0.809385	TCCGACTTGATGGACGACTC	59.191	55.000	0.00	0.00	0.00	3.36
182	183	0.179134	CCGACTTGATGGACGACTCC	60.179	60.000	0.00	0.00	37.04	3.85
189	190	2.283676	TGGACGACTCCACCTCCC	60.284	66.667	0.00	0.00	42.15	4.30
190	191	3.450115	GGACGACTCCACCTCCCG	61.450	72.222	0.00	0.00	36.42	5.14
191	192	4.131088	GACGACTCCACCTCCCGC	62.131	72.222	0.00	0.00	0.00	6.13
192	193	4.680537	ACGACTCCACCTCCCGCT	62.681	66.667	0.00	0.00	0.00	5.52
193	194	3.827898	CGACTCCACCTCCCGCTC	61.828	72.222	0.00	0.00	0.00	5.03
194	195	3.827898	GACTCCACCTCCCGCTCG	61.828	72.222	0.00	0.00	0.00	5.03
229	230	3.488090	GCAAGCCGACGCCTACAC	61.488	66.667	0.00	0.00	34.57	2.90
230	231	3.179265	CAAGCCGACGCCTACACG	61.179	66.667	0.00	0.00	39.50	4.49
235	236	3.129502	CGACGCCTACACGGAGGA	61.130	66.667	0.00	0.00	39.15	3.71
236	237	2.799371	GACGCCTACACGGAGGAG	59.201	66.667	0.00	0.00	41.81	3.69
237	238	2.754658	ACGCCTACACGGAGGAGG	60.755	66.667	0.00	4.12	40.49	4.30
238	239	3.528370	CGCCTACACGGAGGAGGG	61.528	72.222	10.09	0.00	39.15	4.30
239	240	3.155167	GCCTACACGGAGGAGGGG	61.155	72.222	10.09	0.00	39.15	4.79
240	241	3.155167	CCTACACGGAGGAGGGGC	61.155	72.222	0.56	0.00	39.15	5.80
241	242	2.363795	CTACACGGAGGAGGGGCA	60.364	66.667	0.00	0.00	0.00	5.36
242	243	1.762460	CTACACGGAGGAGGGGCAT	60.762	63.158	0.00	0.00	0.00	4.40
243	244	2.032860	CTACACGGAGGAGGGGCATG	62.033	65.000	0.00	0.00	0.00	4.06
244	245	4.864334	CACGGAGGAGGGGCATGC	62.864	72.222	9.90	9.90	0.00	4.06
246	247	4.864334	CGGAGGAGGGGCATGCAC	62.864	72.222	21.36	17.47	0.00	4.57
247	248	3.731728	GGAGGAGGGGCATGCACA	61.732	66.667	23.88	0.00	0.00	4.57
248	249	2.124403	GAGGAGGGGCATGCACAG	60.124	66.667	23.88	0.00	0.00	3.66
249	250	4.437587	AGGAGGGGCATGCACAGC	62.438	66.667	23.88	12.64	0.00	4.40
279	280	3.782443	CGGAAGGGGAAGGGTCCG	61.782	72.222	0.00	0.00	46.04	4.79
280	281	3.408853	GGAAGGGGAAGGGTCCGG	61.409	72.222	0.00	0.00	46.04	5.14
281	282	4.111053	GAAGGGGAAGGGTCCGGC	62.111	72.222	0.00	0.00	46.04	6.13
294	295	2.267642	CCGGCGAGGAATTGGTGA	59.732	61.111	9.30	0.00	45.00	4.02
295	296	1.153168	CCGGCGAGGAATTGGTGAT	60.153	57.895	9.30	0.00	45.00	3.06
296	297	0.748005	CCGGCGAGGAATTGGTGATT	60.748	55.000	9.30	0.00	45.00	2.57
297	298	1.094785	CGGCGAGGAATTGGTGATTT	58.905	50.000	0.00	0.00	0.00	2.17
298	299	1.064060	CGGCGAGGAATTGGTGATTTC	59.936	52.381	0.00	0.00	0.00	2.17
299	300	1.405463	GGCGAGGAATTGGTGATTTCC	59.595	52.381	0.00	0.00	0.00	3.13
300	301	2.091541	GCGAGGAATTGGTGATTTCCA	58.908	47.619	4.66	0.00	35.49	3.53
301	302	2.689983	GCGAGGAATTGGTGATTTCCAT	59.310	45.455	4.66	0.00	37.33	3.41
302	303	3.131046	GCGAGGAATTGGTGATTTCCATT	59.869	43.478	4.66	0.00	37.33	3.16
303	304	4.381932	GCGAGGAATTGGTGATTTCCATTT	60.382	41.667	4.66	0.00	37.33	2.32
304	305	5.343249	CGAGGAATTGGTGATTTCCATTTC	58.657	41.667	4.66	10.14	42.36	2.17
308	309	5.664457	GAATTGGTGATTTCCATTTCCTCC	58.336	41.667	8.33	0.00	39.72	4.30
309	310	2.722094	TGGTGATTTCCATTTCCTCCG	58.278	47.619	0.00	0.00	31.96	4.63
310	311	1.405463	GGTGATTTCCATTTCCTCCGC	59.595	52.381	0.00	0.00	0.00	5.54
311	312	1.405463	GTGATTTCCATTTCCTCCGCC	59.595	52.381	0.00	0.00	0.00	6.13
312	313	1.032794	GATTTCCATTTCCTCCGCCC	58.967	55.000	0.00	0.00	0.00	6.13
313	314	0.631212	ATTTCCATTTCCTCCGCCCT	59.369	50.000	0.00	0.00	0.00	5.19
314	315	0.407918	TTTCCATTTCCTCCGCCCTT	59.592	50.000	0.00	0.00	0.00	3.95
315	316	0.034477	TTCCATTTCCTCCGCCCTTC	60.034	55.000	0.00	0.00	0.00	3.46
316	317	1.453928	CCATTTCCTCCGCCCTTCC	60.454	63.158	0.00	0.00	0.00	3.46
317	318	1.609783	CATTTCCTCCGCCCTTCCT	59.390	57.895	0.00	0.00	0.00	3.36
318	319	0.464554	CATTTCCTCCGCCCTTCCTC	60.465	60.000	0.00	0.00	0.00	3.71
319	320	1.972660	ATTTCCTCCGCCCTTCCTCG	61.973	60.000	0.00	0.00	0.00	4.63
320	321	3.899545	TTCCTCCGCCCTTCCTCGT	62.900	63.158	0.00	0.00	0.00	4.18
321	322	3.391382	CCTCCGCCCTTCCTCGTT	61.391	66.667	0.00	0.00	0.00	3.85
322	323	2.184579	CTCCGCCCTTCCTCGTTC	59.815	66.667	0.00	0.00	0.00	3.95
323	324	2.283676	TCCGCCCTTCCTCGTTCT	60.284	61.111	0.00	0.00	0.00	3.01
324	325	2.125512	CCGCCCTTCCTCGTTCTG	60.126	66.667	0.00	0.00	0.00	3.02
325	326	2.657237	CGCCCTTCCTCGTTCTGT	59.343	61.111	0.00	0.00	0.00	3.41
326	327	1.004918	CGCCCTTCCTCGTTCTGTT	60.005	57.895	0.00	0.00	0.00	3.16
327	328	0.602905	CGCCCTTCCTCGTTCTGTTT	60.603	55.000	0.00	0.00	0.00	2.83
328	329	1.337447	CGCCCTTCCTCGTTCTGTTTA	60.337	52.381	0.00	0.00	0.00	2.01
329	330	2.677037	CGCCCTTCCTCGTTCTGTTTAT	60.677	50.000	0.00	0.00	0.00	1.40
330	331	3.429822	CGCCCTTCCTCGTTCTGTTTATA	60.430	47.826	0.00	0.00	0.00	0.98
331	332	4.704965	GCCCTTCCTCGTTCTGTTTATAT	58.295	43.478	0.00	0.00	0.00	0.86
332	333	5.123936	GCCCTTCCTCGTTCTGTTTATATT	58.876	41.667	0.00	0.00	0.00	1.28
333	334	5.589050	GCCCTTCCTCGTTCTGTTTATATTT	59.411	40.000	0.00	0.00	0.00	1.40
334	335	6.095021	GCCCTTCCTCGTTCTGTTTATATTTT	59.905	38.462	0.00	0.00	0.00	1.82
335	336	7.281549	GCCCTTCCTCGTTCTGTTTATATTTTA	59.718	37.037	0.00	0.00	0.00	1.52
336	337	9.169592	CCCTTCCTCGTTCTGTTTATATTTTAA	57.830	33.333	0.00	0.00	0.00	1.52
337	338	9.983804	CCTTCCTCGTTCTGTTTATATTTTAAC	57.016	33.333	0.00	0.00	0.00	2.01
370	371	9.646427	TTAAGTTGTTTGTAATATGGATTTGCC	57.354	29.630	0.00	0.00	37.10	4.52
371	372	6.329496	AGTTGTTTGTAATATGGATTTGCCG	58.671	36.000	0.00	0.00	40.66	5.69
372	373	5.906113	TGTTTGTAATATGGATTTGCCGT	57.094	34.783	0.00	0.00	40.66	5.68
373	374	6.274157	TGTTTGTAATATGGATTTGCCGTT	57.726	33.333	0.00	0.00	40.66	4.44
374	375	6.096036	TGTTTGTAATATGGATTTGCCGTTG	58.904	36.000	0.00	0.00	40.66	4.10
375	376	6.071896	TGTTTGTAATATGGATTTGCCGTTGA	60.072	34.615	0.00	0.00	40.66	3.18
376	377	5.749596	TGTAATATGGATTTGCCGTTGAG	57.250	39.130	0.00	0.00	40.66	3.02
377	378	3.715628	AATATGGATTTGCCGTTGAGC	57.284	42.857	0.00	0.00	40.66	4.26
378	379	2.418368	TATGGATTTGCCGTTGAGCT	57.582	45.000	0.00	0.00	40.66	4.09
379	380	1.098050	ATGGATTTGCCGTTGAGCTC	58.902	50.000	6.82	6.82	40.66	4.09
380	381	0.960364	TGGATTTGCCGTTGAGCTCC	60.960	55.000	12.15	0.00	40.66	4.70
381	382	1.425428	GATTTGCCGTTGAGCTCCG	59.575	57.895	12.15	8.40	0.00	4.63
382	383	1.982073	GATTTGCCGTTGAGCTCCGG	61.982	60.000	22.64	22.64	46.90	5.14
386	387	4.514577	CCGTTGAGCTCCGGCGAT	62.515	66.667	16.87	0.00	44.37	4.58
387	388	3.257561	CGTTGAGCTCCGGCGATG	61.258	66.667	9.30	0.80	44.37	3.84
388	389	3.567797	GTTGAGCTCCGGCGATGC	61.568	66.667	9.30	12.51	44.37	3.91
389	390	4.081185	TTGAGCTCCGGCGATGCA	62.081	61.111	21.59	0.00	44.37	3.96
390	391	3.604129	TTGAGCTCCGGCGATGCAA	62.604	57.895	21.59	10.52	44.37	4.08
391	392	3.567797	GAGCTCCGGCGATGCAAC	61.568	66.667	21.59	13.31	44.37	4.17
394	395	3.118454	CTCCGGCGATGCAACGTT	61.118	61.111	17.99	0.00	35.59	3.99
395	396	3.367051	CTCCGGCGATGCAACGTTG	62.367	63.158	23.90	23.90	35.59	4.10
396	397	3.418913	CCGGCGATGCAACGTTGA	61.419	61.111	31.62	16.56	35.59	3.18
397	398	2.749865	CCGGCGATGCAACGTTGAT	61.750	57.895	31.62	20.29	35.59	2.57
398	399	1.296867	CGGCGATGCAACGTTGATC	60.297	57.895	31.62	25.14	35.59	2.92
399	400	1.062525	GGCGATGCAACGTTGATCC	59.937	57.895	31.62	18.10	35.59	3.36
400	401	1.296867	GCGATGCAACGTTGATCCG	60.297	57.895	31.62	26.36	35.59	4.18
401	402	1.966493	GCGATGCAACGTTGATCCGT	61.966	55.000	31.62	15.06	44.23	4.69
409	410	1.508632	ACGTTGATCCGTTGAACTGG	58.491	50.000	0.00	0.00	37.96	4.00
410	411	1.069513	ACGTTGATCCGTTGAACTGGA	59.930	47.619	10.39	10.39	37.96	3.86
411	412	2.139917	CGTTGATCCGTTGAACTGGAA	58.860	47.619	11.64	0.00	37.90	3.53
412	413	2.742053	CGTTGATCCGTTGAACTGGAAT	59.258	45.455	11.64	3.21	37.90	3.01
413	414	3.930229	CGTTGATCCGTTGAACTGGAATA	59.070	43.478	11.64	3.46	37.90	1.75
414	415	4.570772	CGTTGATCCGTTGAACTGGAATAT	59.429	41.667	11.64	0.00	37.90	1.28
415	416	5.502382	CGTTGATCCGTTGAACTGGAATATG	60.502	44.000	11.64	4.30	37.90	1.78
416	417	5.351948	TGATCCGTTGAACTGGAATATGA	57.648	39.130	11.64	0.00	37.90	2.15
417	418	5.116180	TGATCCGTTGAACTGGAATATGAC	58.884	41.667	11.64	3.25	37.90	3.06
418	419	3.869065	TCCGTTGAACTGGAATATGACC	58.131	45.455	6.46	0.00	0.00	4.02
419	420	2.607635	CCGTTGAACTGGAATATGACCG	59.392	50.000	0.88	0.00	0.00	4.79
420	421	3.259064	CGTTGAACTGGAATATGACCGT	58.741	45.455	0.00	0.00	0.00	4.83
421	422	3.062099	CGTTGAACTGGAATATGACCGTG	59.938	47.826	0.00	0.00	0.00	4.94
422	423	3.973206	TGAACTGGAATATGACCGTGT	57.027	42.857	0.00	0.00	0.00	4.49
423	424	4.280436	TGAACTGGAATATGACCGTGTT	57.720	40.909	0.00	0.00	32.62	3.32
424	425	4.647611	TGAACTGGAATATGACCGTGTTT	58.352	39.130	0.00	0.00	31.11	2.83
425	426	5.067273	TGAACTGGAATATGACCGTGTTTT	58.933	37.500	0.00	0.00	31.11	2.43
426	427	6.231951	TGAACTGGAATATGACCGTGTTTTA	58.768	36.000	0.00	0.00	31.11	1.52
427	428	6.882140	TGAACTGGAATATGACCGTGTTTTAT	59.118	34.615	0.00	0.00	31.11	1.40
428	429	6.677781	ACTGGAATATGACCGTGTTTTATG	57.322	37.500	0.00	0.00	0.00	1.90
429	430	6.177610	ACTGGAATATGACCGTGTTTTATGT	58.822	36.000	0.00	0.00	0.00	2.29
430	431	7.332557	ACTGGAATATGACCGTGTTTTATGTA	58.667	34.615	0.00	0.00	0.00	2.29
431	432	7.494625	ACTGGAATATGACCGTGTTTTATGTAG	59.505	37.037	0.00	0.00	0.00	2.74
432	433	6.259167	TGGAATATGACCGTGTTTTATGTAGC	59.741	38.462	0.00	0.00	0.00	3.58
433	434	5.900339	ATATGACCGTGTTTTATGTAGCG	57.100	39.130	0.00	0.00	0.00	4.26
434	435	3.029320	TGACCGTGTTTTATGTAGCGT	57.971	42.857	0.00	0.00	0.00	5.07
435	436	3.391965	TGACCGTGTTTTATGTAGCGTT	58.608	40.909	0.00	0.00	0.00	4.84
436	437	3.184783	TGACCGTGTTTTATGTAGCGTTG	59.815	43.478	0.00	0.00	0.00	4.10
437	438	2.096119	ACCGTGTTTTATGTAGCGTTGC	60.096	45.455	0.00	0.00	0.00	4.17
438	439	2.155024	CGTGTTTTATGTAGCGTTGCG	58.845	47.619	0.00	0.00	0.00	4.85
439	440	2.410517	CGTGTTTTATGTAGCGTTGCGT	60.411	45.455	0.00	0.00	0.00	5.24
440	441	2.900046	GTGTTTTATGTAGCGTTGCGTG	59.100	45.455	0.00	0.00	0.00	5.34
441	442	2.096169	TGTTTTATGTAGCGTTGCGTGG	60.096	45.455	0.00	0.00	0.00	4.94
442	443	1.080298	TTTATGTAGCGTTGCGTGGG	58.920	50.000	0.00	0.00	0.00	4.61
443	444	0.037139	TTATGTAGCGTTGCGTGGGT	60.037	50.000	0.00	0.00	0.00	4.51
444	445	0.037139	TATGTAGCGTTGCGTGGGTT	60.037	50.000	0.00	0.00	0.00	4.11
445	446	1.573829	ATGTAGCGTTGCGTGGGTTG	61.574	55.000	0.00	0.00	0.00	3.77
446	447	2.109387	TAGCGTTGCGTGGGTTGT	59.891	55.556	0.00	0.00	0.00	3.32
447	448	0.945265	GTAGCGTTGCGTGGGTTGTA	60.945	55.000	0.00	0.00	0.00	2.41
448	449	0.037139	TAGCGTTGCGTGGGTTGTAT	60.037	50.000	0.00	0.00	0.00	2.29
449	450	1.154301	GCGTTGCGTGGGTTGTATG	60.154	57.895	0.00	0.00	0.00	2.39
450	451	1.499949	CGTTGCGTGGGTTGTATGG	59.500	57.895	0.00	0.00	0.00	2.74
454	455	1.240256	TGCGTGGGTTGTATGGTTTC	58.760	50.000	0.00	0.00	0.00	2.78
468	469	1.202604	TGGTTTCGAGGGTTCAGACAC	60.203	52.381	0.00	0.00	0.00	3.67
474	475	1.889530	GAGGGTTCAGACACGAGGGG	61.890	65.000	0.00	0.00	33.19	4.79
476	477	1.477685	GGGTTCAGACACGAGGGGAA	61.478	60.000	0.00	0.00	0.00	3.97
479	480	1.192146	TTCAGACACGAGGGGAAGGG	61.192	60.000	0.00	0.00	0.00	3.95
480	481	3.003763	AGACACGAGGGGAAGGGC	61.004	66.667	0.00	0.00	0.00	5.19
481	482	3.003763	GACACGAGGGGAAGGGCT	61.004	66.667	0.00	0.00	0.00	5.19
482	483	3.003763	ACACGAGGGGAAGGGCTC	61.004	66.667	0.00	0.00	0.00	4.70
483	484	2.685380	CACGAGGGGAAGGGCTCT	60.685	66.667	0.00	0.00	0.00	4.09
510	511	0.034089	GCTTGGGGGAATGCAGTAGT	60.034	55.000	0.00	0.00	0.00	2.73
579	580	1.226435	CTAGCACGAGCACCGACTC	60.226	63.158	7.77	0.00	45.49	3.36
585	586	1.154131	CGAGCACCGACTCTCTGTG	60.154	63.158	0.00	0.00	41.76	3.66
605	606	4.458989	TGTGCCGCTTCAAGAGAAAATATT	59.541	37.500	0.00	0.00	32.35	1.28
607	608	4.201812	TGCCGCTTCAAGAGAAAATATTCG	60.202	41.667	0.00	0.00	40.63	3.34
647	650	1.402259	CTGTAGCTAGCAGCACGTACT	59.598	52.381	18.83	0.00	45.56	2.73
667	670	2.592993	TTTCGGCCCAGGGAGTCAG	61.593	63.158	10.89	0.00	0.00	3.51
762	765	3.244345	CGACACGAGAGAGAGATGTACTC	59.756	52.174	0.00	0.00	45.22	2.59
839	855	3.934391	CTTCCGTGCGACCTCCACC	62.934	68.421	0.00	0.00	0.00	4.61
903	931	1.304547	CCGTCCTCCTCACACTCCT	60.305	63.158	0.00	0.00	0.00	3.69
904	932	1.316706	CCGTCCTCCTCACACTCCTC	61.317	65.000	0.00	0.00	0.00	3.71
905	933	1.316706	CGTCCTCCTCACACTCCTCC	61.317	65.000	0.00	0.00	0.00	4.30
906	934	0.973496	GTCCTCCTCACACTCCTCCC	60.973	65.000	0.00	0.00	0.00	4.30
907	935	1.079256	CCTCCTCACACTCCTCCCA	59.921	63.158	0.00	0.00	0.00	4.37
908	936	1.261238	CCTCCTCACACTCCTCCCAC	61.261	65.000	0.00	0.00	0.00	4.61
909	937	1.229209	TCCTCACACTCCTCCCACC	60.229	63.158	0.00	0.00	0.00	4.61
910	938	2.650116	CCTCACACTCCTCCCACCG	61.650	68.421	0.00	0.00	0.00	4.94
911	939	3.302347	CTCACACTCCTCCCACCGC	62.302	68.421	0.00	0.00	0.00	5.68
912	940	4.394712	CACACTCCTCCCACCGCC	62.395	72.222	0.00	0.00	0.00	6.13
913	941	4.954118	ACACTCCTCCCACCGCCA	62.954	66.667	0.00	0.00	0.00	5.69
914	942	4.394712	CACTCCTCCCACCGCCAC	62.395	72.222	0.00	0.00	0.00	5.01
940	968	4.394712	CCACCGCCACCTCCAGAC	62.395	72.222	0.00	0.00	0.00	3.51
942	970	4.954118	ACCGCCACCTCCAGACCA	62.954	66.667	0.00	0.00	0.00	4.02
943	971	4.087892	CCGCCACCTCCAGACCAG	62.088	72.222	0.00	0.00	0.00	4.00
948	976	1.915266	CACCTCCAGACCAGAGCCA	60.915	63.158	0.00	0.00	0.00	4.75
949	977	1.611851	ACCTCCAGACCAGAGCCAG	60.612	63.158	0.00	0.00	0.00	4.85
973	1001	1.738099	CCGCTTCCACACGAGAAGG	60.738	63.158	0.00	0.00	40.91	3.46
975	1003	2.035442	GCTTCCACACGAGAAGGGC	61.035	63.158	0.00	0.00	40.91	5.19
976	1004	1.376037	CTTCCACACGAGAAGGGCC	60.376	63.158	0.00	0.00	37.64	5.80
977	1005	3.234630	TTCCACACGAGAAGGGCCG	62.235	63.158	0.00	0.00	0.00	6.13
984	1012	2.028337	GAGAAGGGCCGCTCGATC	59.972	66.667	12.56	0.00	0.00	3.69
986	1014	4.208686	GAAGGGCCGCTCGATCGT	62.209	66.667	15.94	0.00	0.00	3.73
988	1016	2.734756	GAAGGGCCGCTCGATCGTAG	62.735	65.000	15.94	12.06	0.00	3.51
989	1017	3.285215	GGGCCGCTCGATCGTAGA	61.285	66.667	15.94	0.00	45.75	2.59
990	1018	2.719979	GGCCGCTCGATCGTAGAA	59.280	61.111	15.94	0.00	43.58	2.10
993	1021	0.930742	GCCGCTCGATCGTAGAACAG	60.931	60.000	15.94	4.89	43.58	3.16
996	1024	0.930742	GCTCGATCGTAGAACAGGCG	60.931	60.000	15.94	0.00	43.58	5.52
1055	1117	4.415332	GTCGTCGCCGAGGAAGCA	62.415	66.667	11.45	0.00	45.26	3.91
1066	1128	1.897225	GAGGAAGCAGCAGCAGGAGA	61.897	60.000	3.17	0.00	45.49	3.71
1067	1129	1.002868	GGAAGCAGCAGCAGGAGAA	60.003	57.895	3.17	0.00	45.49	2.87
1325	1390	2.174363	ACGTAAGCGCCTTAACCTTT	57.826	45.000	2.29	0.00	42.83	3.11
1380	1445	4.832823	TGTCTCTCTGTCTGTTAATCCACA	59.167	41.667	0.00	0.00	0.00	4.17
1385	1450	5.127845	TCTCTGTCTGTTAATCCACATCCTC	59.872	44.000	0.00	0.00	0.00	3.71
1416	1485	4.148838	TGTTTCATTGGGTTGGGAGTTAG	58.851	43.478	0.00	0.00	0.00	2.34
1417	1486	4.149598	GTTTCATTGGGTTGGGAGTTAGT	58.850	43.478	0.00	0.00	0.00	2.24
1419	1488	4.837093	TCATTGGGTTGGGAGTTAGTAG	57.163	45.455	0.00	0.00	0.00	2.57
1430	1499	7.984050	GGTTGGGAGTTAGTAGTTAGGAATTAC	59.016	40.741	0.00	0.00	0.00	1.89
1431	1500	7.338800	TGGGAGTTAGTAGTTAGGAATTACG	57.661	40.000	0.00	0.00	0.00	3.18
1432	1501	6.891908	TGGGAGTTAGTAGTTAGGAATTACGT	59.108	38.462	0.00	0.00	0.00	3.57
1433	1502	8.052748	TGGGAGTTAGTAGTTAGGAATTACGTA	58.947	37.037	0.00	0.00	0.00	3.57
1434	1503	8.346300	GGGAGTTAGTAGTTAGGAATTACGTAC	58.654	40.741	0.00	0.00	0.00	3.67
1435	1504	9.114952	GGAGTTAGTAGTTAGGAATTACGTACT	57.885	37.037	0.00	3.65	30.78	2.73
1448	1517	8.042515	AGGAATTACGTACTTGTTATTGGCTTA	58.957	33.333	2.55	0.00	0.00	3.09
1458	1527	6.604795	ACTTGTTATTGGCTTATTGCTGATCT	59.395	34.615	0.00	0.00	42.39	2.75
1465	1534	2.033049	GCTTATTGCTGATCTGTGCCTG	59.967	50.000	1.27	0.00	38.95	4.85
1466	1535	3.538591	CTTATTGCTGATCTGTGCCTGA	58.461	45.455	1.27	0.00	0.00	3.86
1467	1536	2.502142	ATTGCTGATCTGTGCCTGAA	57.498	45.000	1.27	0.00	0.00	3.02
1468	1537	1.817357	TTGCTGATCTGTGCCTGAAG	58.183	50.000	1.27	0.00	0.00	3.02
1469	1538	0.035725	TGCTGATCTGTGCCTGAAGG	60.036	55.000	1.27	0.00	38.53	3.46
1476	1545	3.795688	TCTGTGCCTGAAGGAAGATTT	57.204	42.857	0.00	0.00	37.39	2.17
1518	1587	1.251251	CTTTGCTTACCTGCCAAGCT	58.749	50.000	8.38	0.00	46.85	3.74
1519	1588	2.436417	CTTTGCTTACCTGCCAAGCTA	58.564	47.619	8.38	0.00	46.85	3.32
1520	1589	2.113860	TTGCTTACCTGCCAAGCTAG	57.886	50.000	8.38	0.00	46.85	3.42
1552	1624	3.305199	GCAATAGGAGGCAAGAATCATGC	60.305	47.826	1.33	1.33	43.08	4.06
1564	1639	4.418973	AGAATCATGCATAGCTGACTGT	57.581	40.909	0.00	0.00	0.00	3.55
1685	1760	8.894731	AGTCTGAAATCTGAATGAATGAATCAG	58.105	33.333	0.00	0.00	42.53	2.90
1815	1912	1.495579	AAGTGCAGATGAGCTGGGGT	61.496	55.000	0.00	0.00	45.03	4.95
1899	1997	1.977056	TGCATCCTTGATGATGAGCC	58.023	50.000	8.21	0.00	43.94	4.70
2079	2189	0.530211	CATGCTCAGCCTCCTCTTCG	60.530	60.000	0.00	0.00	0.00	3.79
2131	2241	8.853469	GGATACGGTATGCACTATAATTACTC	57.147	38.462	13.91	0.00	0.00	2.59
2132	2242	7.919621	GGATACGGTATGCACTATAATTACTCC	59.080	40.741	13.91	0.00	0.00	3.85
2135	2245	6.100004	CGGTATGCACTATAATTACTCCCTG	58.900	44.000	0.00	0.00	0.00	4.45
2144	2267	8.642432	CACTATAATTACTCCCTGTTCATCTCA	58.358	37.037	0.00	0.00	0.00	3.27
2148	2271	5.604758	TTACTCCCTGTTCATCTCATCTG	57.395	43.478	0.00	0.00	0.00	2.90
2149	2272	2.770802	ACTCCCTGTTCATCTCATCTGG	59.229	50.000	0.00	0.00	0.00	3.86
2167	2290	1.634973	TGGAACTCCATCCATCAGCAA	59.365	47.619	0.00	0.00	44.52	3.91
2168	2291	2.295885	GGAACTCCATCCATCAGCAAG	58.704	52.381	0.00	0.00	39.42	4.01
2172	2295	4.785346	ACTCCATCCATCAGCAAGTAAT	57.215	40.909	0.00	0.00	0.00	1.89
2177	2300	5.072736	TCCATCCATCAGCAAGTAATCTCAT	59.927	40.000	0.00	0.00	0.00	2.90
2190	2313	5.574082	AGTAATCTCATCGTCGTCTTCTTG	58.426	41.667	0.00	0.00	0.00	3.02
2195	2318	1.726791	CATCGTCGTCTTCTTGGTTGG	59.273	52.381	0.00	0.00	0.00	3.77
2196	2319	0.748450	TCGTCGTCTTCTTGGTTGGT	59.252	50.000	0.00	0.00	0.00	3.67
2197	2320	1.137513	CGTCGTCTTCTTGGTTGGTC	58.862	55.000	0.00	0.00	0.00	4.02
2198	2321	1.509703	GTCGTCTTCTTGGTTGGTCC	58.490	55.000	0.00	0.00	0.00	4.46
2199	2322	0.032952	TCGTCTTCTTGGTTGGTCCG	59.967	55.000	0.00	0.00	39.52	4.79
2200	2323	0.249741	CGTCTTCTTGGTTGGTCCGT	60.250	55.000	0.00	0.00	39.52	4.69
2201	2324	1.509703	GTCTTCTTGGTTGGTCCGTC	58.490	55.000	0.00	0.00	39.52	4.79
2450	2573	1.368850	GCACGTCAACAACTTCGCC	60.369	57.895	0.00	0.00	0.00	5.54
2633	2756	1.883084	CGTCGCAGGGTAAGCATCC	60.883	63.158	0.00	0.00	0.00	3.51
2634	2757	1.523938	GTCGCAGGGTAAGCATCCC	60.524	63.158	3.15	3.15	44.90	3.85
2640	2763	1.912971	GGGTAAGCATCCCTCCGTT	59.087	57.895	4.02	0.00	41.58	4.44
2641	2764	1.125633	GGGTAAGCATCCCTCCGTTA	58.874	55.000	4.02	0.00	41.58	3.18
2642	2765	1.697982	GGGTAAGCATCCCTCCGTTAT	59.302	52.381	4.02	0.00	41.58	1.89
2644	2767	3.139077	GGTAAGCATCCCTCCGTTATTG	58.861	50.000	0.00	0.00	0.00	1.90
2653	2785	2.099098	CCCTCCGTTATTGGTGCATTTC	59.901	50.000	0.00	0.00	0.00	2.17
2712	2849	2.434359	ACGCTTAGCCGCTGGAAC	60.434	61.111	2.16	0.00	0.00	3.62
2713	2850	2.434185	CGCTTAGCCGCTGGAACA	60.434	61.111	2.16	0.00	0.00	3.18
2714	2851	2.740714	CGCTTAGCCGCTGGAACAC	61.741	63.158	2.16	0.00	0.00	3.32
2715	2852	1.671054	GCTTAGCCGCTGGAACACA	60.671	57.895	2.16	0.00	0.00	3.72
2719	2856	1.191535	TAGCCGCTGGAACACATAGT	58.808	50.000	2.16	0.00	0.00	2.12
2721	2858	1.134788	AGCCGCTGGAACACATAGTAC	60.135	52.381	0.00	0.00	0.00	2.73
2722	2859	1.556564	CCGCTGGAACACATAGTACG	58.443	55.000	0.00	0.00	0.00	3.67
2723	2860	1.133598	CCGCTGGAACACATAGTACGA	59.866	52.381	0.00	0.00	0.00	3.43
2724	2861	2.416296	CCGCTGGAACACATAGTACGAA	60.416	50.000	0.00	0.00	0.00	3.85
2725	2862	3.444916	CGCTGGAACACATAGTACGAAT	58.555	45.455	0.00	0.00	0.00	3.34
2726	2863	3.486108	CGCTGGAACACATAGTACGAATC	59.514	47.826	0.00	0.00	0.00	2.52
2727	2864	3.802685	GCTGGAACACATAGTACGAATCC	59.197	47.826	0.00	0.00	0.00	3.01
2728	2865	4.441634	GCTGGAACACATAGTACGAATCCT	60.442	45.833	0.00	0.00	0.00	3.24
2795	2933	5.562298	ACACTTATGGACACCTAAACTGT	57.438	39.130	0.00	0.00	0.00	3.55
2816	2954	8.915057	ACTGTAGTAGTTAGTAGTTCACAGAA	57.085	34.615	10.25	0.00	35.67	3.02
2817	2955	9.517868	ACTGTAGTAGTTAGTAGTTCACAGAAT	57.482	33.333	10.25	0.00	35.67	2.40
2818	2956	9.991388	CTGTAGTAGTTAGTAGTTCACAGAATC	57.009	37.037	0.00	0.00	34.24	2.52
2819	2957	9.511272	TGTAGTAGTTAGTAGTTCACAGAATCA	57.489	33.333	0.00	0.00	0.00	2.57
2820	2958	9.991388	GTAGTAGTTAGTAGTTCACAGAATCAG	57.009	37.037	0.00	0.00	0.00	2.90
2821	2959	8.638629	AGTAGTTAGTAGTTCACAGAATCAGT	57.361	34.615	0.00	0.00	0.00	3.41
2822	2960	9.080097	AGTAGTTAGTAGTTCACAGAATCAGTT	57.920	33.333	0.00	0.00	0.00	3.16
2987	3141	0.468226	ACCGACAGGCAAAGACAGAA	59.532	50.000	0.00	0.00	42.76	3.02
3068	3231	0.530870	GTGATCCGTAGCTGGCCTTC	60.531	60.000	3.32	0.00	0.00	3.46
3101	3264	3.572255	TCCTCCACCATGTAAAACAAAGC	59.428	43.478	0.00	0.00	0.00	3.51
3140	3303	1.888436	CTCCTCCAGCCTAACGTGCA	61.888	60.000	0.00	0.00	0.00	4.57
3141	3304	1.448540	CCTCCAGCCTAACGTGCAG	60.449	63.158	0.00	0.00	0.00	4.41
3144	3307	2.680913	CCAGCCTAACGTGCAGCAC	61.681	63.158	16.21	16.21	0.00	4.40
3726	3892	2.012937	ACGTGTTTCTGTCGGTGAAA	57.987	45.000	0.00	0.00	0.00	2.69
3729	3895	4.312443	ACGTGTTTCTGTCGGTGAAATAT	58.688	39.130	0.00	0.00	36.10	1.28
3742	3908	9.826574	TGTCGGTGAAATATATTAAACTAAGCT	57.173	29.630	0.00	0.00	0.00	3.74
3744	3910	9.268268	TCGGTGAAATATATTAAACTAAGCTGG	57.732	33.333	0.00	0.00	0.00	4.85
3745	3911	8.015658	CGGTGAAATATATTAAACTAAGCTGGC	58.984	37.037	0.00	0.00	0.00	4.85
3979	4157	1.226267	CGCACCAACACACACACAC	60.226	57.895	0.00	0.00	0.00	3.82
4007	4185	2.821810	GCAGAGAGCGCTTTCCCC	60.822	66.667	23.08	11.41	0.00	4.81
4025	4203	2.616960	CCCGTCGTCATGAATTCTTCA	58.383	47.619	7.05	0.00	45.01	3.02
4038	4223	1.398692	TTCTTCAAGCCCCACAACAC	58.601	50.000	0.00	0.00	0.00	3.32
4082	4267	2.188818	AGAGATCAAGGGAGGGAAGG	57.811	55.000	0.00	0.00	0.00	3.46
4086	4271	2.849318	AGATCAAGGGAGGGAAGGAAAG	59.151	50.000	0.00	0.00	0.00	2.62
4090	4275	2.684104	GGAGGGAAGGAAAGGGGC	59.316	66.667	0.00	0.00	0.00	5.80
4091	4276	1.931180	GGAGGGAAGGAAAGGGGCT	60.931	63.158	0.00	0.00	0.00	5.19
4092	4277	1.304617	GAGGGAAGGAAAGGGGCTG	59.695	63.158	0.00	0.00	0.00	4.85
4093	4278	2.363018	GGGAAGGAAAGGGGCTGC	60.363	66.667	0.00	0.00	0.00	5.25
4094	4279	2.751837	GGAAGGAAAGGGGCTGCG	60.752	66.667	0.00	0.00	0.00	5.18
4095	4280	2.751837	GAAGGAAAGGGGCTGCGG	60.752	66.667	0.00	0.00	0.00	5.69
4115	4300	0.179045	CCTCGGCCTGATTGGTTAGG	60.179	60.000	0.00	0.00	38.35	2.69
4147	4332	2.113243	GACAAGGCTCGTTGGGGTCT	62.113	60.000	7.16	0.00	0.00	3.85
4228	4413	4.891627	GAGAATCGTCTCTCATCTGTCA	57.108	45.455	10.41	0.00	45.99	3.58
4229	4414	5.437289	GAGAATCGTCTCTCATCTGTCAT	57.563	43.478	10.41	0.00	45.99	3.06
4230	4415	6.552859	GAGAATCGTCTCTCATCTGTCATA	57.447	41.667	10.41	0.00	45.99	2.15
4231	4416	6.951062	AGAATCGTCTCTCATCTGTCATAA	57.049	37.500	0.00	0.00	0.00	1.90
4236	4421	4.822350	CGTCTCTCATCTGTCATAACCCTA	59.178	45.833	0.00	0.00	0.00	3.53
4271	4456	1.433534	CTTCCTTCCAGCTCGTGTTC	58.566	55.000	0.00	0.00	0.00	3.18
4290	4476	1.623311	TCATCCTTTTGAGTCAGCGGA	59.377	47.619	8.88	8.88	0.00	5.54
4291	4477	2.237143	TCATCCTTTTGAGTCAGCGGAT	59.763	45.455	11.86	11.86	0.00	4.18
4318	4504	1.137872	CGAGGCAATAGACAGCTCCTT	59.862	52.381	0.00	0.00	0.00	3.36
4319	4505	2.801342	CGAGGCAATAGACAGCTCCTTC	60.801	54.545	0.00	0.00	0.00	3.46
4364	4570	4.189188	CTGCGCTGGCCTGATTGC	62.189	66.667	14.77	13.59	38.85	3.56
4406	4615	7.113404	CCATTTGGCGATTAATAATCAAGTTCG	59.887	37.037	12.82	1.09	37.78	3.95
4431	4642	0.181114	AGTCACACAGAGCAGCCAAA	59.819	50.000	0.00	0.00	0.00	3.28
4433	4644	1.068748	GTCACACAGAGCAGCCAAATG	60.069	52.381	0.00	0.00	0.00	2.32
4442	4653	3.567164	AGAGCAGCCAAATGTGCATATAC	59.433	43.478	0.00	0.00	42.47	1.47
4476	4687	1.246649	TGCAAACCACCACATGCTAG	58.753	50.000	0.00	0.00	39.49	3.42
4477	4688	0.109132	GCAAACCACCACATGCTAGC	60.109	55.000	8.10	8.10	35.93	3.42
4478	4689	1.246649	CAAACCACCACATGCTAGCA	58.753	50.000	21.85	21.85	0.00	3.49
4495	4749	0.665835	GCACGGTTGACATTTCACCA	59.334	50.000	0.00	0.00	0.00	4.17
4502	4756	0.665835	TGACATTTCACCAACCGTGC	59.334	50.000	0.00	0.00	42.69	5.34
4505	4759	1.202359	ACATTTCACCAACCGTGCAAC	60.202	47.619	0.00	0.00	42.69	4.17
4543	4800	3.566742	TCTGCCGGTTAAAAGAACTTTCC	59.433	43.478	1.90	0.00	31.45	3.13
4580	4837	3.368635	GGCATCAAAATGAACATGGCAGA	60.369	43.478	0.00	0.00	34.61	4.26
4585	4842	1.180029	AATGAACATGGCAGACAGGC	58.820	50.000	0.00	0.00	44.50	4.85
4627	4889	6.970043	TGCATAACTATTCATAAACCGTTTGC	59.030	34.615	6.77	0.00	0.00	3.68
4643	4905	4.895854	GCGCCAGCAACATTTCAT	57.104	50.000	0.00	0.00	44.35	2.57
4645	4907	2.276472	GCGCCAGCAACATTTCATAA	57.724	45.000	0.00	0.00	44.35	1.90
4716	4984	1.566018	GGCAGTTCACCGAAACCTCG	61.566	60.000	0.00	0.00	45.02	4.63
4776	5049	0.967887	CAAGCGGAGGAGGAGACAGA	60.968	60.000	0.00	0.00	0.00	3.41
4819	5092	2.670414	GAGCTCACAAGTTCATCTTCCG	59.330	50.000	9.40	0.00	33.27	4.30
4901	5174	5.901413	TGGCCTTGATATCTCTCTCAAAT	57.099	39.130	3.32	0.00	31.40	2.32
4910	5183	6.426025	TGATATCTCTCTCAAATTCATTGCCG	59.574	38.462	3.98	0.00	38.98	5.69

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
11	12	2.125147	TCATTCTTGCGGCGGAGG	60.125	61.111	9.78	6.61	0.00	4.30
12	13	1.298157	TTGTCATTCTTGCGGCGGAG	61.298	55.000	9.78	0.00	0.00	4.63
13	14	1.298157	CTTGTCATTCTTGCGGCGGA	61.298	55.000	9.78	1.34	0.00	5.54
14	15	1.135315	CTTGTCATTCTTGCGGCGG	59.865	57.895	9.78	0.00	0.00	6.13
15	16	0.179215	GTCTTGTCATTCTTGCGGCG	60.179	55.000	0.51	0.51	0.00	6.46
16	17	0.179215	CGTCTTGTCATTCTTGCGGC	60.179	55.000	0.00	0.00	0.00	6.53
17	18	0.179215	GCGTCTTGTCATTCTTGCGG	60.179	55.000	0.00	0.00	0.00	5.69
18	19	0.792640	AGCGTCTTGTCATTCTTGCG	59.207	50.000	0.00	0.00	0.00	4.85
19	20	1.129437	GGAGCGTCTTGTCATTCTTGC	59.871	52.381	0.00	0.00	0.00	4.01
20	21	1.391485	CGGAGCGTCTTGTCATTCTTG	59.609	52.381	0.00	0.00	0.00	3.02
21	22	1.272490	TCGGAGCGTCTTGTCATTCTT	59.728	47.619	0.00	0.00	0.00	2.52
22	23	0.888619	TCGGAGCGTCTTGTCATTCT	59.111	50.000	0.00	0.00	0.00	2.40
23	24	0.992802	GTCGGAGCGTCTTGTCATTC	59.007	55.000	0.00	0.00	0.00	2.67
24	25	0.603569	AGTCGGAGCGTCTTGTCATT	59.396	50.000	0.00	0.00	0.00	2.57
25	26	0.171455	GAGTCGGAGCGTCTTGTCAT	59.829	55.000	0.00	0.00	0.00	3.06
26	27	1.579932	GAGTCGGAGCGTCTTGTCA	59.420	57.895	0.00	0.00	0.00	3.58
27	28	1.512310	CGAGTCGGAGCGTCTTGTC	60.512	63.158	4.10	0.00	0.00	3.18
28	29	2.561885	CGAGTCGGAGCGTCTTGT	59.438	61.111	4.10	0.00	0.00	3.16
29	30	2.876645	GCGAGTCGGAGCGTCTTG	60.877	66.667	15.52	0.00	31.58	3.02
30	31	4.117661	GGCGAGTCGGAGCGTCTT	62.118	66.667	15.52	0.00	0.00	3.01
32	33	4.194720	ATGGCGAGTCGGAGCGTC	62.195	66.667	15.52	0.00	0.00	5.19
33	34	4.194720	GATGGCGAGTCGGAGCGT	62.195	66.667	15.52	0.00	0.00	5.07
35	36	3.889044	TCGATGGCGAGTCGGAGC	61.889	66.667	15.52	0.00	42.51	4.70
45	46	2.167861	GCTCCGACAACTCGATGGC	61.168	63.158	0.00	0.00	43.06	4.40
46	47	1.874019	CGCTCCGACAACTCGATGG	60.874	63.158	0.00	0.00	43.06	3.51
47	48	1.154016	ACGCTCCGACAACTCGATG	60.154	57.895	0.00	0.00	43.06	3.84
48	49	1.154016	CACGCTCCGACAACTCGAT	60.154	57.895	0.00	0.00	43.06	3.59
49	50	2.183858	CTCACGCTCCGACAACTCGA	62.184	60.000	0.00	0.00	43.06	4.04
50	51	1.797933	CTCACGCTCCGACAACTCG	60.798	63.158	0.00	0.00	39.83	4.18
51	52	1.444553	CCTCACGCTCCGACAACTC	60.445	63.158	0.00	0.00	0.00	3.01
52	53	2.651361	CCTCACGCTCCGACAACT	59.349	61.111	0.00	0.00	0.00	3.16
53	54	3.112709	GCCTCACGCTCCGACAAC	61.113	66.667	0.00	0.00	0.00	3.32
54	55	2.652382	TTTGCCTCACGCTCCGACAA	62.652	55.000	0.00	0.00	38.78	3.18
55	56	3.158537	TTTGCCTCACGCTCCGACA	62.159	57.895	0.00	0.00	38.78	4.35
56	57	2.357034	TTTGCCTCACGCTCCGAC	60.357	61.111	0.00	0.00	38.78	4.79
57	58	2.357034	GTTTGCCTCACGCTCCGA	60.357	61.111	0.00	0.00	38.78	4.55
58	59	2.175184	CTTGTTTGCCTCACGCTCCG	62.175	60.000	0.00	0.00	38.78	4.63
59	60	1.576421	CTTGTTTGCCTCACGCTCC	59.424	57.895	0.00	0.00	38.78	4.70
60	61	0.884704	TCCTTGTTTGCCTCACGCTC	60.885	55.000	0.00	0.00	38.78	5.03
61	62	0.886490	CTCCTTGTTTGCCTCACGCT	60.886	55.000	0.00	0.00	38.78	5.07
62	63	1.576421	CTCCTTGTTTGCCTCACGC	59.424	57.895	0.00	0.00	38.31	5.34
63	64	1.856265	GCCTCCTTGTTTGCCTCACG	61.856	60.000	0.00	0.00	0.00	4.35
64	65	1.856265	CGCCTCCTTGTTTGCCTCAC	61.856	60.000	0.00	0.00	0.00	3.51
65	66	1.600636	CGCCTCCTTGTTTGCCTCA	60.601	57.895	0.00	0.00	0.00	3.86
66	67	2.335712	CCGCCTCCTTGTTTGCCTC	61.336	63.158	0.00	0.00	0.00	4.70
67	68	2.282462	CCGCCTCCTTGTTTGCCT	60.282	61.111	0.00	0.00	0.00	4.75
68	69	4.056125	GCCGCCTCCTTGTTTGCC	62.056	66.667	0.00	0.00	0.00	4.52
69	70	4.404654	CGCCGCCTCCTTGTTTGC	62.405	66.667	0.00	0.00	0.00	3.68
70	71	3.737172	CCGCCGCCTCCTTGTTTG	61.737	66.667	0.00	0.00	0.00	2.93
100	101	3.207669	CCTGCTCCTTCGCATGGC	61.208	66.667	0.00	0.00	39.52	4.40
101	102	1.817099	GTCCTGCTCCTTCGCATGG	60.817	63.158	0.00	0.00	39.52	3.66
102	103	1.817099	GGTCCTGCTCCTTCGCATG	60.817	63.158	0.00	0.00	39.52	4.06
103	104	2.586792	GGTCCTGCTCCTTCGCAT	59.413	61.111	0.00	0.00	39.52	4.73
104	105	4.069232	CGGTCCTGCTCCTTCGCA	62.069	66.667	0.00	0.00	38.40	5.10
106	107	4.821589	GGCGGTCCTGCTCCTTCG	62.822	72.222	5.82	0.00	34.52	3.79
107	108	3.394836	AGGCGGTCCTGCTCCTTC	61.395	66.667	5.82	0.00	42.34	3.46
130	131	4.783621	TCATGCCCGACAGCCTGC	62.784	66.667	0.00	0.00	0.00	4.85
131	132	2.513204	CTCATGCCCGACAGCCTG	60.513	66.667	0.00	0.00	0.00	4.85
132	133	3.790437	CCTCATGCCCGACAGCCT	61.790	66.667	0.00	0.00	0.00	4.58
133	134	4.101448	ACCTCATGCCCGACAGCC	62.101	66.667	0.00	0.00	0.00	4.85
134	135	2.821366	CACCTCATGCCCGACAGC	60.821	66.667	0.00	0.00	0.00	4.40
143	144	1.812922	GTCGGAGCTGCACCTCATG	60.813	63.158	14.15	3.17	33.47	3.07
144	145	1.954362	GAGTCGGAGCTGCACCTCAT	61.954	60.000	14.15	0.00	33.47	2.90
145	146	2.601666	AGTCGGAGCTGCACCTCA	60.602	61.111	14.15	0.00	33.47	3.86
146	147	2.183046	GAGTCGGAGCTGCACCTC	59.817	66.667	14.15	5.71	0.00	3.85
147	148	3.386237	GGAGTCGGAGCTGCACCT	61.386	66.667	14.15	0.00	0.00	4.00
148	149	4.803426	CGGAGTCGGAGCTGCACC	62.803	72.222	5.91	6.00	0.00	5.01
149	150	3.749064	TCGGAGTCGGAGCTGCAC	61.749	66.667	5.91	2.83	36.95	4.57
150	151	3.749064	GTCGGAGTCGGAGCTGCA	61.749	66.667	5.91	0.00	36.95	4.41
151	152	2.995872	AAGTCGGAGTCGGAGCTGC	61.996	63.158	0.00	0.00	36.95	5.25
152	153	1.153939	CAAGTCGGAGTCGGAGCTG	60.154	63.158	0.00	0.00	36.95	4.24
153	154	0.681564	ATCAAGTCGGAGTCGGAGCT	60.682	55.000	0.00	0.00	36.95	4.09
154	155	0.526524	CATCAAGTCGGAGTCGGAGC	60.527	60.000	0.00	0.00	36.95	4.70
155	156	0.101399	CCATCAAGTCGGAGTCGGAG	59.899	60.000	0.00	0.00	36.95	4.63
156	157	0.323087	TCCATCAAGTCGGAGTCGGA	60.323	55.000	0.00	0.00	36.95	4.55
157	158	0.179134	GTCCATCAAGTCGGAGTCGG	60.179	60.000	0.00	0.00	36.95	4.79
158	159	0.523546	CGTCCATCAAGTCGGAGTCG	60.524	60.000	0.00	0.00	37.82	4.18
159	160	0.809385	TCGTCCATCAAGTCGGAGTC	59.191	55.000	0.00	0.00	29.98	3.36
160	161	0.526662	GTCGTCCATCAAGTCGGAGT	59.473	55.000	0.00	0.00	29.98	3.85
161	162	0.811915	AGTCGTCCATCAAGTCGGAG	59.188	55.000	0.00	0.00	29.98	4.63
162	163	0.809385	GAGTCGTCCATCAAGTCGGA	59.191	55.000	0.00	0.00	0.00	4.55
163	164	0.179134	GGAGTCGTCCATCAAGTCGG	60.179	60.000	0.00	0.00	43.31	4.79
164	165	3.330766	GGAGTCGTCCATCAAGTCG	57.669	57.895	0.00	0.00	43.31	4.18
173	174	3.450115	CGGGAGGTGGAGTCGTCC	61.450	72.222	0.00	0.00	44.24	4.79
174	175	4.131088	GCGGGAGGTGGAGTCGTC	62.131	72.222	0.00	0.00	0.00	4.20
175	176	4.680537	AGCGGGAGGTGGAGTCGT	62.681	66.667	0.00	0.00	40.33	4.34
176	177	3.827898	GAGCGGGAGGTGGAGTCG	61.828	72.222	0.00	0.00	43.00	4.18
177	178	3.827898	CGAGCGGGAGGTGGAGTC	61.828	72.222	0.00	0.00	43.00	3.36
212	213	3.488090	GTGTAGGCGTCGGCTTGC	61.488	66.667	27.30	19.22	39.70	4.01
213	214	3.179265	CGTGTAGGCGTCGGCTTG	61.179	66.667	27.30	10.72	39.70	4.01
214	215	4.430765	CCGTGTAGGCGTCGGCTT	62.431	66.667	27.30	11.02	39.70	4.35
216	217	4.849329	CTCCGTGTAGGCGTCGGC	62.849	72.222	11.43	11.43	43.35	5.54
217	218	4.189188	CCTCCGTGTAGGCGTCGG	62.189	72.222	0.00	0.00	44.76	4.79
218	219	3.109612	CTCCTCCGTGTAGGCGTCG	62.110	68.421	0.00	0.00	40.77	5.12
219	220	2.772691	CCTCCTCCGTGTAGGCGTC	61.773	68.421	0.00	0.00	40.77	5.19
220	221	2.754658	CCTCCTCCGTGTAGGCGT	60.755	66.667	0.00	0.00	40.77	5.68
221	222	3.528370	CCCTCCTCCGTGTAGGCG	61.528	72.222	0.00	0.00	40.77	5.52
222	223	3.155167	CCCCTCCTCCGTGTAGGC	61.155	72.222	0.00	0.00	40.77	3.93
223	224	3.155167	GCCCCTCCTCCGTGTAGG	61.155	72.222	0.00	0.00	42.97	3.18
224	225	1.762460	ATGCCCCTCCTCCGTGTAG	60.762	63.158	0.00	0.00	0.00	2.74
225	226	2.063979	CATGCCCCTCCTCCGTGTA	61.064	63.158	0.00	0.00	0.00	2.90
226	227	3.402681	CATGCCCCTCCTCCGTGT	61.403	66.667	0.00	0.00	0.00	4.49
227	228	4.864334	GCATGCCCCTCCTCCGTG	62.864	72.222	6.36	0.00	0.00	4.94
229	230	4.864334	GTGCATGCCCCTCCTCCG	62.864	72.222	16.68	0.00	0.00	4.63
230	231	3.711059	CTGTGCATGCCCCTCCTCC	62.711	68.421	16.68	0.00	0.00	4.30
231	232	2.124403	CTGTGCATGCCCCTCCTC	60.124	66.667	16.68	0.00	0.00	3.71
232	233	4.437587	GCTGTGCATGCCCCTCCT	62.438	66.667	16.68	0.00	0.00	3.69
255	256	1.144057	CTTCCCCTTCCGGTCATCG	59.856	63.158	0.00	0.00	38.88	3.84
256	257	1.527370	CCTTCCCCTTCCGGTCATC	59.473	63.158	0.00	0.00	0.00	2.92
257	258	2.001269	CCCTTCCCCTTCCGGTCAT	61.001	63.158	0.00	0.00	0.00	3.06
258	259	2.609610	CCCTTCCCCTTCCGGTCA	60.610	66.667	0.00	0.00	0.00	4.02
259	260	2.609921	ACCCTTCCCCTTCCGGTC	60.610	66.667	0.00	0.00	0.00	4.79
260	261	2.609921	GACCCTTCCCCTTCCGGT	60.610	66.667	0.00	0.00	0.00	5.28
261	262	3.408853	GGACCCTTCCCCTTCCGG	61.409	72.222	0.00	0.00	35.57	5.14
262	263	3.782443	CGGACCCTTCCCCTTCCG	61.782	72.222	0.00	0.00	44.65	4.30
263	264	3.408853	CCGGACCCTTCCCCTTCC	61.409	72.222	0.00	0.00	38.99	3.46
264	265	4.111053	GCCGGACCCTTCCCCTTC	62.111	72.222	5.05	0.00	38.99	3.46
270	271	2.253403	AATTCCTCGCCGGACCCTTC	62.253	60.000	5.05	0.00	42.97	3.46
271	272	2.298661	AATTCCTCGCCGGACCCTT	61.299	57.895	5.05	0.00	42.97	3.95
272	273	2.687566	AATTCCTCGCCGGACCCT	60.688	61.111	5.05	0.00	42.97	4.34
273	274	2.513897	CAATTCCTCGCCGGACCC	60.514	66.667	5.05	0.00	42.97	4.46
274	275	2.513897	CCAATTCCTCGCCGGACC	60.514	66.667	5.05	0.00	42.97	4.46
275	276	2.106683	CACCAATTCCTCGCCGGAC	61.107	63.158	5.05	0.00	42.97	4.79
276	277	1.622607	ATCACCAATTCCTCGCCGGA	61.623	55.000	5.05	0.00	41.06	5.14
277	278	0.748005	AATCACCAATTCCTCGCCGG	60.748	55.000	0.00	0.00	0.00	6.13
278	279	1.064060	GAAATCACCAATTCCTCGCCG	59.936	52.381	0.00	0.00	0.00	6.46
279	280	1.405463	GGAAATCACCAATTCCTCGCC	59.595	52.381	0.00	0.00	41.54	5.54
280	281	2.091541	TGGAAATCACCAATTCCTCGC	58.908	47.619	6.16	0.00	44.43	5.03
281	282	4.989279	AATGGAAATCACCAATTCCTCG	57.011	40.909	6.16	0.00	44.43	4.63
285	286	5.664457	GGAGGAAATGGAAATCACCAATTC	58.336	41.667	0.00	0.00	44.46	2.17
286	287	4.160252	CGGAGGAAATGGAAATCACCAATT	59.840	41.667	0.00	0.00	43.47	2.32
287	288	3.701040	CGGAGGAAATGGAAATCACCAAT	59.299	43.478	0.00	0.00	43.47	3.16
288	289	3.088532	CGGAGGAAATGGAAATCACCAA	58.911	45.455	0.00	0.00	43.47	3.67
289	290	2.722094	CGGAGGAAATGGAAATCACCA	58.278	47.619	0.00	0.00	44.41	4.17
290	291	1.405463	GCGGAGGAAATGGAAATCACC	59.595	52.381	0.00	0.00	0.00	4.02
291	292	1.405463	GGCGGAGGAAATGGAAATCAC	59.595	52.381	0.00	0.00	0.00	3.06
292	293	1.684869	GGGCGGAGGAAATGGAAATCA	60.685	52.381	0.00	0.00	0.00	2.57
293	294	1.032794	GGGCGGAGGAAATGGAAATC	58.967	55.000	0.00	0.00	0.00	2.17
294	295	0.631212	AGGGCGGAGGAAATGGAAAT	59.369	50.000	0.00	0.00	0.00	2.17
295	296	0.407918	AAGGGCGGAGGAAATGGAAA	59.592	50.000	0.00	0.00	0.00	3.13
296	297	0.034477	GAAGGGCGGAGGAAATGGAA	60.034	55.000	0.00	0.00	0.00	3.53
297	298	1.607612	GAAGGGCGGAGGAAATGGA	59.392	57.895	0.00	0.00	0.00	3.41
298	299	1.453928	GGAAGGGCGGAGGAAATGG	60.454	63.158	0.00	0.00	0.00	3.16
299	300	0.464554	GAGGAAGGGCGGAGGAAATG	60.465	60.000	0.00	0.00	0.00	2.32
300	301	1.915983	GAGGAAGGGCGGAGGAAAT	59.084	57.895	0.00	0.00	0.00	2.17
301	302	2.656069	CGAGGAAGGGCGGAGGAAA	61.656	63.158	0.00	0.00	0.00	3.13
302	303	3.075005	CGAGGAAGGGCGGAGGAA	61.075	66.667	0.00	0.00	0.00	3.36
303	304	3.899545	AACGAGGAAGGGCGGAGGA	62.900	63.158	0.00	0.00	0.00	3.71
304	305	3.372554	GAACGAGGAAGGGCGGAGG	62.373	68.421	0.00	0.00	0.00	4.30
305	306	2.184579	GAACGAGGAAGGGCGGAG	59.815	66.667	0.00	0.00	0.00	4.63
306	307	2.283676	AGAACGAGGAAGGGCGGA	60.284	61.111	0.00	0.00	0.00	5.54
307	308	2.125512	CAGAACGAGGAAGGGCGG	60.126	66.667	0.00	0.00	0.00	6.13
308	309	0.602905	AAACAGAACGAGGAAGGGCG	60.603	55.000	0.00	0.00	0.00	6.13
309	310	2.467566	TAAACAGAACGAGGAAGGGC	57.532	50.000	0.00	0.00	0.00	5.19
310	311	7.625828	AAAATATAAACAGAACGAGGAAGGG	57.374	36.000	0.00	0.00	0.00	3.95
311	312	9.983804	GTTAAAATATAAACAGAACGAGGAAGG	57.016	33.333	0.00	0.00	0.00	3.46
344	345	9.646427	GGCAAATCCATATTACAAACAACTTAA	57.354	29.630	0.00	0.00	34.01	1.85
345	346	7.971168	CGGCAAATCCATATTACAAACAACTTA	59.029	33.333	0.00	0.00	34.01	2.24
346	347	6.811170	CGGCAAATCCATATTACAAACAACTT	59.189	34.615	0.00	0.00	34.01	2.66
347	348	6.071616	ACGGCAAATCCATATTACAAACAACT	60.072	34.615	0.00	0.00	34.01	3.16
348	349	6.096695	ACGGCAAATCCATATTACAAACAAC	58.903	36.000	0.00	0.00	34.01	3.32
349	350	6.274157	ACGGCAAATCCATATTACAAACAA	57.726	33.333	0.00	0.00	34.01	2.83
350	351	5.906113	ACGGCAAATCCATATTACAAACA	57.094	34.783	0.00	0.00	34.01	2.83
351	352	6.326375	TCAACGGCAAATCCATATTACAAAC	58.674	36.000	0.00	0.00	34.01	2.93
352	353	6.516739	TCAACGGCAAATCCATATTACAAA	57.483	33.333	0.00	0.00	34.01	2.83
353	354	5.449862	GCTCAACGGCAAATCCATATTACAA	60.450	40.000	0.00	0.00	34.01	2.41
354	355	4.036262	GCTCAACGGCAAATCCATATTACA	59.964	41.667	0.00	0.00	34.01	2.41
355	356	4.275936	AGCTCAACGGCAAATCCATATTAC	59.724	41.667	0.00	0.00	34.01	1.89
356	357	4.460263	AGCTCAACGGCAAATCCATATTA	58.540	39.130	0.00	0.00	34.01	0.98
357	358	3.290710	AGCTCAACGGCAAATCCATATT	58.709	40.909	0.00	0.00	34.01	1.28
358	359	2.880890	GAGCTCAACGGCAAATCCATAT	59.119	45.455	9.40	0.00	34.01	1.78
359	360	2.288666	GAGCTCAACGGCAAATCCATA	58.711	47.619	9.40	0.00	34.01	2.74
360	361	1.098050	GAGCTCAACGGCAAATCCAT	58.902	50.000	9.40	0.00	34.01	3.41
361	362	0.960364	GGAGCTCAACGGCAAATCCA	60.960	55.000	17.19	0.00	34.01	3.41
362	363	1.803289	GGAGCTCAACGGCAAATCC	59.197	57.895	17.19	0.00	34.17	3.01
363	364	1.425428	CGGAGCTCAACGGCAAATC	59.575	57.895	17.19	0.00	34.17	2.17
364	365	2.040544	CCGGAGCTCAACGGCAAAT	61.041	57.895	17.19	0.00	43.96	2.32
365	366	2.668212	CCGGAGCTCAACGGCAAA	60.668	61.111	17.19	0.00	43.96	3.68
370	371	3.257561	CATCGCCGGAGCTCAACG	61.258	66.667	17.19	15.35	36.60	4.10
371	372	3.567797	GCATCGCCGGAGCTCAAC	61.568	66.667	17.19	2.77	36.60	3.18
372	373	3.604129	TTGCATCGCCGGAGCTCAA	62.604	57.895	17.19	3.94	36.60	3.02
373	374	4.081185	TTGCATCGCCGGAGCTCA	62.081	61.111	17.19	0.00	36.60	4.26
374	375	3.567797	GTTGCATCGCCGGAGCTC	61.568	66.667	5.05	4.71	36.60	4.09
377	378	3.118454	AACGTTGCATCGCCGGAG	61.118	61.111	16.76	0.00	0.00	4.63
378	379	3.418913	CAACGTTGCATCGCCGGA	61.419	61.111	16.51	0.00	0.00	5.14
379	380	2.631696	GATCAACGTTGCATCGCCGG	62.632	60.000	23.47	0.00	0.00	6.13
380	381	1.296867	GATCAACGTTGCATCGCCG	60.297	57.895	23.47	8.39	0.00	6.46
381	382	1.062525	GGATCAACGTTGCATCGCC	59.937	57.895	23.47	14.53	0.00	5.54
382	383	1.296867	CGGATCAACGTTGCATCGC	60.297	57.895	23.47	16.59	0.00	4.58
383	384	2.078226	ACGGATCAACGTTGCATCG	58.922	52.632	23.47	23.92	46.25	3.84
391	392	1.790755	TCCAGTTCAACGGATCAACG	58.209	50.000	0.00	0.00	40.31	4.10
392	393	5.584649	TCATATTCCAGTTCAACGGATCAAC	59.415	40.000	2.52	0.00	0.00	3.18
393	394	5.584649	GTCATATTCCAGTTCAACGGATCAA	59.415	40.000	2.52	0.00	0.00	2.57
394	395	5.116180	GTCATATTCCAGTTCAACGGATCA	58.884	41.667	2.52	0.00	0.00	2.92
395	396	4.511826	GGTCATATTCCAGTTCAACGGATC	59.488	45.833	2.52	0.00	0.00	3.36
396	397	4.451900	GGTCATATTCCAGTTCAACGGAT	58.548	43.478	2.52	0.00	0.00	4.18
397	398	3.677700	CGGTCATATTCCAGTTCAACGGA	60.678	47.826	0.00	0.00	0.00	4.69
398	399	2.607635	CGGTCATATTCCAGTTCAACGG	59.392	50.000	0.00	0.00	0.00	4.44
399	400	3.062099	CACGGTCATATTCCAGTTCAACG	59.938	47.826	0.00	0.00	0.00	4.10
400	401	4.000988	ACACGGTCATATTCCAGTTCAAC	58.999	43.478	0.00	0.00	0.00	3.18
401	402	4.280436	ACACGGTCATATTCCAGTTCAA	57.720	40.909	0.00	0.00	0.00	2.69
402	403	3.973206	ACACGGTCATATTCCAGTTCA	57.027	42.857	0.00	0.00	0.00	3.18
403	404	5.622770	AAAACACGGTCATATTCCAGTTC	57.377	39.130	0.00	0.00	0.00	3.01
404	405	6.657541	ACATAAAACACGGTCATATTCCAGTT	59.342	34.615	0.00	0.00	0.00	3.16
405	406	6.177610	ACATAAAACACGGTCATATTCCAGT	58.822	36.000	0.00	0.00	0.00	4.00
406	407	6.677781	ACATAAAACACGGTCATATTCCAG	57.322	37.500	0.00	0.00	0.00	3.86
407	408	6.259167	GCTACATAAAACACGGTCATATTCCA	59.741	38.462	0.00	0.00	0.00	3.53
408	409	6.563381	CGCTACATAAAACACGGTCATATTCC	60.563	42.308	0.00	0.00	0.00	3.01
409	410	6.019318	ACGCTACATAAAACACGGTCATATTC	60.019	38.462	0.00	0.00	0.00	1.75
410	411	5.813672	ACGCTACATAAAACACGGTCATATT	59.186	36.000	0.00	0.00	0.00	1.28
411	412	5.353938	ACGCTACATAAAACACGGTCATAT	58.646	37.500	0.00	0.00	0.00	1.78
412	413	4.746729	ACGCTACATAAAACACGGTCATA	58.253	39.130	0.00	0.00	0.00	2.15
413	414	3.592059	ACGCTACATAAAACACGGTCAT	58.408	40.909	0.00	0.00	0.00	3.06
414	415	3.029320	ACGCTACATAAAACACGGTCA	57.971	42.857	0.00	0.00	0.00	4.02
415	416	3.728600	CAACGCTACATAAAACACGGTC	58.271	45.455	0.00	0.00	0.00	4.79
416	417	2.096119	GCAACGCTACATAAAACACGGT	60.096	45.455	0.00	0.00	0.00	4.83
417	418	2.501881	GCAACGCTACATAAAACACGG	58.498	47.619	0.00	0.00	0.00	4.94
418	419	2.155024	CGCAACGCTACATAAAACACG	58.845	47.619	0.00	0.00	0.00	4.49
419	420	2.900046	CACGCAACGCTACATAAAACAC	59.100	45.455	0.00	0.00	0.00	3.32
420	421	2.096169	CCACGCAACGCTACATAAAACA	60.096	45.455	0.00	0.00	0.00	2.83
421	422	2.501881	CCACGCAACGCTACATAAAAC	58.498	47.619	0.00	0.00	0.00	2.43
422	423	1.465387	CCCACGCAACGCTACATAAAA	59.535	47.619	0.00	0.00	0.00	1.52
423	424	1.080298	CCCACGCAACGCTACATAAA	58.920	50.000	0.00	0.00	0.00	1.40
424	425	0.037139	ACCCACGCAACGCTACATAA	60.037	50.000	0.00	0.00	0.00	1.90
425	426	0.037139	AACCCACGCAACGCTACATA	60.037	50.000	0.00	0.00	0.00	2.29
426	427	1.302192	AACCCACGCAACGCTACAT	60.302	52.632	0.00	0.00	0.00	2.29
427	428	2.109387	AACCCACGCAACGCTACA	59.891	55.556	0.00	0.00	0.00	2.74
428	429	0.945265	TACAACCCACGCAACGCTAC	60.945	55.000	0.00	0.00	0.00	3.58
429	430	0.037139	ATACAACCCACGCAACGCTA	60.037	50.000	0.00	0.00	0.00	4.26
430	431	1.302192	ATACAACCCACGCAACGCT	60.302	52.632	0.00	0.00	0.00	5.07
431	432	1.154301	CATACAACCCACGCAACGC	60.154	57.895	0.00	0.00	0.00	4.84
432	433	1.231958	ACCATACAACCCACGCAACG	61.232	55.000	0.00	0.00	0.00	4.10
433	434	0.955905	AACCATACAACCCACGCAAC	59.044	50.000	0.00	0.00	0.00	4.17
434	435	1.609555	GAAACCATACAACCCACGCAA	59.390	47.619	0.00	0.00	0.00	4.85
435	436	1.240256	GAAACCATACAACCCACGCA	58.760	50.000	0.00	0.00	0.00	5.24
436	437	0.167251	CGAAACCATACAACCCACGC	59.833	55.000	0.00	0.00	0.00	5.34
437	438	1.730064	CTCGAAACCATACAACCCACG	59.270	52.381	0.00	0.00	0.00	4.94
438	439	2.081462	CCTCGAAACCATACAACCCAC	58.919	52.381	0.00	0.00	0.00	4.61
439	440	1.003812	CCCTCGAAACCATACAACCCA	59.996	52.381	0.00	0.00	0.00	4.51
440	441	1.003928	ACCCTCGAAACCATACAACCC	59.996	52.381	0.00	0.00	0.00	4.11
441	442	2.484742	ACCCTCGAAACCATACAACC	57.515	50.000	0.00	0.00	0.00	3.77
442	443	3.404899	TGAACCCTCGAAACCATACAAC	58.595	45.455	0.00	0.00	0.00	3.32
443	444	3.325425	TCTGAACCCTCGAAACCATACAA	59.675	43.478	0.00	0.00	0.00	2.41
444	445	2.901192	TCTGAACCCTCGAAACCATACA	59.099	45.455	0.00	0.00	0.00	2.29
445	446	3.259902	GTCTGAACCCTCGAAACCATAC	58.740	50.000	0.00	0.00	0.00	2.39
446	447	2.901192	TGTCTGAACCCTCGAAACCATA	59.099	45.455	0.00	0.00	0.00	2.74
447	448	1.697432	TGTCTGAACCCTCGAAACCAT	59.303	47.619	0.00	0.00	0.00	3.55
448	449	1.124780	TGTCTGAACCCTCGAAACCA	58.875	50.000	0.00	0.00	0.00	3.67
449	450	1.509703	GTGTCTGAACCCTCGAAACC	58.490	55.000	0.00	0.00	0.00	3.27
450	451	1.137513	CGTGTCTGAACCCTCGAAAC	58.862	55.000	0.00	0.00	0.00	2.78
454	455	1.213013	CCTCGTGTCTGAACCCTCG	59.787	63.158	0.00	0.00	0.00	4.63
468	469	4.168291	GCAGAGCCCTTCCCCTCG	62.168	72.222	0.00	0.00	33.39	4.63
517	518	1.268743	GCTGACTTGTTCCAACTGCAC	60.269	52.381	0.00	0.00	0.00	4.57
579	580	0.037882	TCTCTTGAAGCGGCACAGAG	60.038	55.000	1.45	7.05	0.00	3.35
585	586	4.201822	ACGAATATTTTCTCTTGAAGCGGC	60.202	41.667	0.00	0.00	33.28	6.53
607	608	1.866496	CGGTGCTACGCGTCTACAC	60.866	63.158	18.63	21.80	0.00	2.90
647	650	2.852075	ACTCCCTGGGCCGAAACA	60.852	61.111	8.22	0.00	0.00	2.83
667	670	3.090532	ATTGGTCCTCGCCCCCTC	61.091	66.667	0.00	0.00	0.00	4.30
925	953	4.954118	TGGTCTGGAGGTGGCGGT	62.954	66.667	0.00	0.00	0.00	5.68
928	956	2.985456	CTCTGGTCTGGAGGTGGC	59.015	66.667	0.00	0.00	0.00	5.01
954	982	1.006102	CTTCTCGTGTGGAAGCGGT	60.006	57.895	0.00	0.00	34.66	5.68
959	987	2.747686	GGCCCTTCTCGTGTGGAA	59.252	61.111	0.00	0.00	0.00	3.53
973	1001	1.657794	GTTCTACGATCGAGCGGCC	60.658	63.158	28.05	6.01	35.12	6.13
975	1003	0.317103	CCTGTTCTACGATCGAGCGG	60.317	60.000	28.05	10.64	35.12	5.52
976	1004	0.930742	GCCTGTTCTACGATCGAGCG	60.931	60.000	23.12	23.12	37.29	5.03
977	1005	0.930742	CGCCTGTTCTACGATCGAGC	60.931	60.000	24.34	9.61	0.00	5.03
981	1009	0.459585	TTGCCGCCTGTTCTACGATC	60.460	55.000	0.00	0.00	0.00	3.69
982	1010	0.178068	ATTGCCGCCTGTTCTACGAT	59.822	50.000	0.00	0.00	0.00	3.73
983	1011	0.739462	CATTGCCGCCTGTTCTACGA	60.739	55.000	0.00	0.00	0.00	3.43
984	1012	1.705337	CCATTGCCGCCTGTTCTACG	61.705	60.000	0.00	0.00	0.00	3.51
986	1014	1.748879	GCCATTGCCGCCTGTTCTA	60.749	57.895	0.00	0.00	0.00	2.10
988	1016	4.481112	CGCCATTGCCGCCTGTTC	62.481	66.667	0.00	0.00	0.00	3.18
1054	1116	2.438075	GCCCTTCTCCTGCTGCTG	60.438	66.667	0.00	0.00	0.00	4.41
1055	1117	2.481307	CTTGCCCTTCTCCTGCTGCT	62.481	60.000	0.00	0.00	0.00	4.24
1057	1119	1.378250	CCTTGCCCTTCTCCTGCTG	60.378	63.158	0.00	0.00	0.00	4.41
1240	1305	2.436824	GAAGCGGTGGAGGAAGCC	60.437	66.667	0.00	0.00	0.00	4.35
1314	1379	2.901338	AGGAAGGGAAAGGTTAAGGC	57.099	50.000	0.00	0.00	0.00	4.35
1315	1380	3.333980	AGGAAGGAAGGGAAAGGTTAAGG	59.666	47.826	0.00	0.00	0.00	2.69
1318	1383	3.984770	TGAAGGAAGGAAGGGAAAGGTTA	59.015	43.478	0.00	0.00	0.00	2.85
1319	1384	2.789399	TGAAGGAAGGAAGGGAAAGGTT	59.211	45.455	0.00	0.00	0.00	3.50
1320	1385	2.428901	TGAAGGAAGGAAGGGAAAGGT	58.571	47.619	0.00	0.00	0.00	3.50
1325	1390	2.642982	TGGATTGAAGGAAGGAAGGGA	58.357	47.619	0.00	0.00	0.00	4.20
1380	1445	0.737715	GAAACAGCGAGCACGAGGAT	60.738	55.000	8.01	0.00	42.66	3.24
1385	1450	0.453282	CCAATGAAACAGCGAGCACG	60.453	55.000	0.00	0.00	42.93	5.34
1419	1488	8.118607	GCCAATAACAAGTACGTAATTCCTAAC	58.881	37.037	5.10	0.00	0.00	2.34
1448	1517	2.366533	CTTCAGGCACAGATCAGCAAT	58.633	47.619	0.00	0.00	0.00	3.56
1458	1527	5.241506	CAGTAAAAATCTTCCTTCAGGCACA	59.758	40.000	0.00	0.00	34.44	4.57
1465	1534	7.631717	AGTATGGCAGTAAAAATCTTCCTTC	57.368	36.000	0.00	0.00	0.00	3.46
1466	1535	8.329502	ACTAGTATGGCAGTAAAAATCTTCCTT	58.670	33.333	0.00	0.00	0.00	3.36
1467	1536	7.862675	ACTAGTATGGCAGTAAAAATCTTCCT	58.137	34.615	0.00	0.00	0.00	3.36
1468	1537	8.398665	CAACTAGTATGGCAGTAAAAATCTTCC	58.601	37.037	0.00	0.00	0.00	3.46
1469	1538	7.910683	GCAACTAGTATGGCAGTAAAAATCTTC	59.089	37.037	0.00	0.00	0.00	2.87
1476	1545	4.383770	GGGAGCAACTAGTATGGCAGTAAA	60.384	45.833	14.26	0.00	0.00	2.01
1518	1587	4.587684	GCCTCCTATTGCAACTACCTACTA	59.412	45.833	0.00	0.00	0.00	1.82
1519	1588	3.388350	GCCTCCTATTGCAACTACCTACT	59.612	47.826	0.00	0.00	0.00	2.57
1520	1589	3.134081	TGCCTCCTATTGCAACTACCTAC	59.866	47.826	0.00	0.00	33.87	3.18
1552	1624	4.274705	ACAGTCGATCTACAGTCAGCTATG	59.725	45.833	0.00	0.00	0.00	2.23
1564	1639	1.401018	CGTGTGTGCACAGTCGATCTA	60.401	52.381	28.15	1.03	45.50	1.98
1685	1760	1.244019	ATCTTGGCAGGTTCGGTTGC	61.244	55.000	0.00	0.00	39.56	4.17
1784	1876	3.107661	GCACTTGCATTGGCGTGC	61.108	61.111	7.63	7.63	45.48	5.34
2120	2230	9.868277	GATGAGATGAACAGGGAGTAATTATAG	57.132	37.037	0.00	0.00	0.00	1.31
2121	2231	9.607333	AGATGAGATGAACAGGGAGTAATTATA	57.393	33.333	0.00	0.00	0.00	0.98
2122	2232	8.373981	CAGATGAGATGAACAGGGAGTAATTAT	58.626	37.037	0.00	0.00	0.00	1.28
2123	2233	7.202038	CCAGATGAGATGAACAGGGAGTAATTA	60.202	40.741	0.00	0.00	0.00	1.40
2125	2235	5.071519	CCAGATGAGATGAACAGGGAGTAAT	59.928	44.000	0.00	0.00	0.00	1.89
2128	2238	2.770802	CCAGATGAGATGAACAGGGAGT	59.229	50.000	0.00	0.00	0.00	3.85
2129	2239	3.036819	TCCAGATGAGATGAACAGGGAG	58.963	50.000	0.00	0.00	0.00	4.30
2131	2241	3.199508	AGTTCCAGATGAGATGAACAGGG	59.800	47.826	0.00	0.00	39.57	4.45
2132	2242	4.440880	GAGTTCCAGATGAGATGAACAGG	58.559	47.826	0.00	0.00	39.57	4.00
2135	2245	4.478206	TGGAGTTCCAGATGAGATGAAC	57.522	45.455	0.00	0.00	42.01	3.18
2148	2271	2.295885	CTTGCTGATGGATGGAGTTCC	58.704	52.381	0.00	0.00	36.24	3.62
2149	2272	2.996631	ACTTGCTGATGGATGGAGTTC	58.003	47.619	0.00	0.00	0.00	3.01
2163	2286	3.378742	AGACGACGATGAGATTACTTGCT	59.621	43.478	0.00	0.00	0.00	3.91
2164	2287	3.696898	AGACGACGATGAGATTACTTGC	58.303	45.455	0.00	0.00	0.00	4.01
2167	2290	5.449314	CCAAGAAGACGACGATGAGATTACT	60.449	44.000	0.00	0.00	0.00	2.24
2168	2291	4.735822	CCAAGAAGACGACGATGAGATTAC	59.264	45.833	0.00	0.00	0.00	1.89
2172	2295	2.160205	ACCAAGAAGACGACGATGAGA	58.840	47.619	0.00	0.00	0.00	3.27
2177	2300	0.748450	ACCAACCAAGAAGACGACGA	59.252	50.000	0.00	0.00	0.00	4.20
2190	2313	3.041940	CACTGCGACGGACCAACC	61.042	66.667	0.00	0.00	0.00	3.77
2219	2342	0.523966	CGCCGGAGATGAGGTAGATC	59.476	60.000	5.05	0.00	0.00	2.75
2450	2573	4.096003	AGGAACCCGCCGATGTGG	62.096	66.667	0.00	0.00	42.11	4.17
2486	2609	2.398429	CGCATGAGCAGCACGAAG	59.602	61.111	0.00	0.00	42.27	3.79
2507	2630	1.450312	CTCCATCCACCCGAAGTGC	60.450	63.158	0.43	0.00	45.83	4.40
2633	2756	2.752354	TGAAATGCACCAATAACGGAGG	59.248	45.455	0.00	0.00	0.00	4.30
2634	2757	3.181497	CCTGAAATGCACCAATAACGGAG	60.181	47.826	0.00	0.00	0.00	4.63
2635	2758	2.752354	CCTGAAATGCACCAATAACGGA	59.248	45.455	0.00	0.00	0.00	4.69
2637	2760	3.057596	ACACCTGAAATGCACCAATAACG	60.058	43.478	0.00	0.00	0.00	3.18
2640	2763	3.760738	TGACACCTGAAATGCACCAATA	58.239	40.909	0.00	0.00	0.00	1.90
2641	2764	2.596346	TGACACCTGAAATGCACCAAT	58.404	42.857	0.00	0.00	0.00	3.16
2642	2765	2.064434	TGACACCTGAAATGCACCAA	57.936	45.000	0.00	0.00	0.00	3.67
2644	2767	4.737054	CTTAATGACACCTGAAATGCACC	58.263	43.478	0.00	0.00	0.00	5.01
2653	2785	1.131883	GCTGCTGCTTAATGACACCTG	59.868	52.381	8.53	0.00	36.03	4.00
2698	2835	2.205074	CTATGTGTTCCAGCGGCTAAG	58.795	52.381	0.26	0.00	0.00	2.18
2723	2860	5.934402	AATGTCCACGTACTAGAAGGATT	57.066	39.130	0.00	0.00	0.00	3.01
2724	2861	5.187186	ACAAATGTCCACGTACTAGAAGGAT	59.813	40.000	0.00	0.00	0.00	3.24
2725	2862	4.525487	ACAAATGTCCACGTACTAGAAGGA	59.475	41.667	0.00	0.00	0.00	3.36
2726	2863	4.817517	ACAAATGTCCACGTACTAGAAGG	58.182	43.478	0.00	0.00	0.00	3.46
2727	2864	5.389516	GCAACAAATGTCCACGTACTAGAAG	60.390	44.000	0.00	0.00	0.00	2.85
2728	2865	4.449743	GCAACAAATGTCCACGTACTAGAA	59.550	41.667	0.00	0.00	0.00	2.10
2766	2904	9.148104	GTTTAGGTGTCCATAAGTGTTAACTAG	57.852	37.037	7.22	0.00	34.77	2.57
2795	2933	9.736414	ACTGATTCTGTGAACTACTAACTACTA	57.264	33.333	0.00	0.00	0.00	1.82
2806	2944	4.437682	TTCCCAACTGATTCTGTGAACT	57.562	40.909	0.00	0.00	0.00	3.01
2808	2946	5.656416	ACTTTTTCCCAACTGATTCTGTGAA	59.344	36.000	0.00	0.00	0.00	3.18
2809	2947	5.067674	CACTTTTTCCCAACTGATTCTGTGA	59.932	40.000	0.00	0.00	0.00	3.58
2810	2948	5.284079	CACTTTTTCCCAACTGATTCTGTG	58.716	41.667	0.00	0.00	0.00	3.66
2811	2949	4.342092	CCACTTTTTCCCAACTGATTCTGT	59.658	41.667	0.00	0.00	0.00	3.41
2812	2950	4.584325	TCCACTTTTTCCCAACTGATTCTG	59.416	41.667	0.00	0.00	0.00	3.02
2813	2951	4.803452	TCCACTTTTTCCCAACTGATTCT	58.197	39.130	0.00	0.00	0.00	2.40
2814	2952	4.827284	TCTCCACTTTTTCCCAACTGATTC	59.173	41.667	0.00	0.00	0.00	2.52
2815	2953	4.803452	TCTCCACTTTTTCCCAACTGATT	58.197	39.130	0.00	0.00	0.00	2.57
2816	2954	4.453480	TCTCCACTTTTTCCCAACTGAT	57.547	40.909	0.00	0.00	0.00	2.90
2817	2955	3.943671	TCTCCACTTTTTCCCAACTGA	57.056	42.857	0.00	0.00	0.00	3.41
2818	2956	3.243535	GCTTCTCCACTTTTTCCCAACTG	60.244	47.826	0.00	0.00	0.00	3.16
2819	2957	2.959030	GCTTCTCCACTTTTTCCCAACT	59.041	45.455	0.00	0.00	0.00	3.16
2820	2958	2.287608	CGCTTCTCCACTTTTTCCCAAC	60.288	50.000	0.00	0.00	0.00	3.77
2821	2959	1.953686	CGCTTCTCCACTTTTTCCCAA	59.046	47.619	0.00	0.00	0.00	4.12
2822	2960	1.142060	TCGCTTCTCCACTTTTTCCCA	59.858	47.619	0.00	0.00	0.00	4.37
2879	3027	2.260844	ATCTACCAACGGGATGCATG	57.739	50.000	2.46	0.00	38.05	4.06
2987	3141	8.588290	TTGTATAATAAAAAGAGCCATGGTGT	57.412	30.769	14.67	0.12	0.00	4.16
3031	3191	7.150640	CGGATCACTATGATGATGAAGAAGAA	58.849	38.462	0.00	0.00	39.48	2.52
3034	3194	6.410942	ACGGATCACTATGATGATGAAGAA	57.589	37.500	0.00	0.00	39.48	2.52
3037	3197	5.478332	AGCTACGGATCACTATGATGATGAA	59.522	40.000	0.00	0.00	39.48	2.57
3068	3231	5.749462	ACATGGTGGAGGAAGAAGAATAAG	58.251	41.667	0.00	0.00	0.00	1.73
3109	3272	1.125093	TGGAGGAGGAAAAGGCGACA	61.125	55.000	0.00	0.00	0.00	4.35
3119	3282	0.970937	CACGTTAGGCTGGAGGAGGA	60.971	60.000	0.00	0.00	0.00	3.71
3140	3303	2.281070	CGTGGCTGTCAAGGTGCT	60.281	61.111	0.00	0.00	0.00	4.40
3141	3304	4.030452	GCGTGGCTGTCAAGGTGC	62.030	66.667	0.00	0.00	0.00	5.01
3144	3307	4.641645	TGGGCGTGGCTGTCAAGG	62.642	66.667	0.00	0.00	0.00	3.61
3698	3862	3.302221	CGACAGAAACACGTAGTTGTTGG	60.302	47.826	4.51	0.00	41.61	3.77
3726	3892	6.316390	GCCATCGCCAGCTTAGTTTAATATAT	59.684	38.462	0.00	0.00	0.00	0.86
3729	3895	3.813166	GCCATCGCCAGCTTAGTTTAATA	59.187	43.478	0.00	0.00	0.00	0.98
3759	3925	2.816777	AGAATGGCCTCCTTTCTTCC	57.183	50.000	3.32	0.00	42.76	3.46
3819	3989	1.563655	GATCGCGAATCTGCAGCAG	59.436	57.895	15.24	17.10	34.15	4.24
3979	4157	1.569708	GCTCTCTGCTGGAATTCTCG	58.430	55.000	5.23	0.00	38.95	4.04
4025	4203	3.222287	ACAATGTGTTGTGGGGCTT	57.778	47.368	0.00	0.00	46.43	4.35
4038	4223	6.918892	TCTACAAATATGAACCGGACAATG	57.081	37.500	9.46	8.91	0.00	2.82
4095	4280	0.815615	CTAACCAATCAGGCCGAGGC	60.816	60.000	5.37	5.37	43.14	4.70
4096	4281	0.179045	CCTAACCAATCAGGCCGAGG	60.179	60.000	0.00	0.00	43.14	4.63
4097	4282	3.386543	CCTAACCAATCAGGCCGAG	57.613	57.895	0.00	0.00	43.14	4.63
4115	4300	1.010797	CTTGTCTGTGTGTGTGCGC	60.011	57.895	0.00	0.00	0.00	6.09
4116	4301	1.643292	CCTTGTCTGTGTGTGTGCG	59.357	57.895	0.00	0.00	0.00	5.34
4117	4302	1.097547	AGCCTTGTCTGTGTGTGTGC	61.098	55.000	0.00	0.00	0.00	4.57
4188	4373	9.362911	CGATTCTCAAAATAATCTTCATTCGTC	57.637	33.333	0.00	0.00	31.29	4.20
4221	4406	4.444876	GCACATGGTAGGGTTATGACAGAT	60.445	45.833	0.00	0.00	0.00	2.90
4222	4407	3.118408	GCACATGGTAGGGTTATGACAGA	60.118	47.826	0.00	0.00	0.00	3.41
4223	4408	3.206150	GCACATGGTAGGGTTATGACAG	58.794	50.000	0.00	0.00	0.00	3.51
4225	4410	2.159014	TCGCACATGGTAGGGTTATGAC	60.159	50.000	0.00	0.00	0.00	3.06
4227	4412	2.210116	GTCGCACATGGTAGGGTTATG	58.790	52.381	0.00	0.00	0.00	1.90
4228	4413	1.202486	CGTCGCACATGGTAGGGTTAT	60.202	52.381	0.00	0.00	0.00	1.89
4229	4414	0.173935	CGTCGCACATGGTAGGGTTA	59.826	55.000	0.00	0.00	0.00	2.85
4230	4415	1.079405	CGTCGCACATGGTAGGGTT	60.079	57.895	0.00	0.00	0.00	4.11
4231	4416	1.823169	AACGTCGCACATGGTAGGGT	61.823	55.000	0.00	0.00	0.00	4.34
4236	4421	1.841663	GAAGCAACGTCGCACATGGT	61.842	55.000	0.00	0.00	0.00	3.55
4271	4456	2.099141	TCCGCTGACTCAAAAGGATG	57.901	50.000	0.00	0.00	0.00	3.51
4290	4476	4.122776	CTGTCTATTGCCTCGTTGCTTAT	58.877	43.478	1.05	0.00	0.00	1.73
4291	4477	3.521560	CTGTCTATTGCCTCGTTGCTTA	58.478	45.455	1.05	0.00	0.00	3.09
4364	4570	0.742505	ATGGAATCTTGCGCATGTGG	59.257	50.000	21.14	8.27	0.00	4.17
4406	4615	2.286654	GCTGCTCTGTGTGACTTGTTTC	60.287	50.000	0.00	0.00	0.00	2.78
4476	4687	0.665835	TGGTGAAATGTCAACCGTGC	59.334	50.000	0.00	0.00	41.16	5.34
4477	4688	2.542824	GGTTGGTGAAATGTCAACCGTG	60.543	50.000	0.00	0.00	46.98	4.94
4478	4689	1.679153	GGTTGGTGAAATGTCAACCGT	59.321	47.619	0.00	0.00	46.98	4.83
4522	4779	3.316868	TGGAAAGTTCTTTTAACCGGCAG	59.683	43.478	0.00	0.00	0.00	4.85
4543	4800	0.602562	ATGCCGTTCCATGTGGTTTG	59.397	50.000	0.00	0.00	36.34	2.93
4580	4837	5.396548	GCATCTGGAGATATGATATGCCTGT	60.397	44.000	0.00	0.00	33.78	4.00
4627	4889	2.164219	AGGTTATGAAATGTTGCTGGCG	59.836	45.455	0.00	0.00	0.00	5.69
4640	4902	5.755409	TTCTGTTGGCTCTTAGGTTATGA	57.245	39.130	0.00	0.00	0.00	2.15
4641	4903	6.173339	TCTTTCTGTTGGCTCTTAGGTTATG	58.827	40.000	0.00	0.00	0.00	1.90
4642	4904	6.374417	TCTTTCTGTTGGCTCTTAGGTTAT	57.626	37.500	0.00	0.00	0.00	1.89
4643	4905	5.818678	TCTTTCTGTTGGCTCTTAGGTTA	57.181	39.130	0.00	0.00	0.00	2.85
4645	4907	4.348168	TCTTCTTTCTGTTGGCTCTTAGGT	59.652	41.667	0.00	0.00	0.00	3.08
4776	5049	6.072452	GCTCTGAGTTAAATGCTAAAAGGTGT	60.072	38.462	6.53	0.00	0.00	4.16
4819	5092	1.202818	AGAAGAACTGGCCTGGACAAC	60.203	52.381	14.82	0.00	0.00	3.32
4901	5174	1.299648	CCTCCAGACCGGCAATGAA	59.700	57.895	0.00	0.00	33.14	2.57

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.