Multiple sequence alignment - TraesCS4D01G350200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G350200 chr4D 100.000 6620 0 0 1 6620 502570313 502576932 0.000000e+00 12225
1 TraesCS4D01G350200 chr4B 88.644 3179 178 83 3517 6620 646970797 646973867 0.000000e+00 3701
2 TraesCS4D01G350200 chr4B 91.145 1118 72 17 829 1935 646968051 646969152 0.000000e+00 1491
3 TraesCS4D01G350200 chr4B 91.870 615 37 5 2864 3471 646970190 646970798 0.000000e+00 846
4 TraesCS4D01G350200 chr4B 84.615 819 72 27 1 791 646967263 646968055 0.000000e+00 765
5 TraesCS4D01G350200 chr5A 90.486 1461 79 34 133 1544 685987688 685989137 0.000000e+00 1873
6 TraesCS4D01G350200 chr5A 89.753 1093 63 18 4869 5938 685993599 685994665 0.000000e+00 1352
7 TraesCS4D01G350200 chr5A 92.489 892 60 5 2954 3842 685991756 685992643 0.000000e+00 1269
8 TraesCS4D01G350200 chr5A 87.950 805 73 20 3860 4658 685992703 685993489 0.000000e+00 928
9 TraesCS4D01G350200 chr5A 84.668 737 40 29 5923 6620 685994687 685995389 0.000000e+00 667
10 TraesCS4D01G350200 chr5A 83.333 420 51 13 2199 2601 685990021 685990438 2.920000e-98 370
11 TraesCS4D01G350200 chr5A 82.183 449 56 11 1495 1935 685989129 685989561 1.360000e-96 364
12 TraesCS4D01G350200 chr1A 89.032 310 17 4 4701 5009 526304617 526304910 1.050000e-97 368
13 TraesCS4D01G350200 chr1A 78.594 313 63 4 1082 1392 341867896 341868206 3.130000e-48 204
14 TraesCS4D01G350200 chr7B 83.125 320 50 3 1090 1407 478486777 478486460 8.400000e-74 289
15 TraesCS4D01G350200 chr7B 78.763 372 53 18 2791 3141 478484714 478484348 6.680000e-55 226
16 TraesCS4D01G350200 chr7B 88.571 105 11 1 3996 4099 478484024 478483920 6.970000e-25 126
17 TraesCS4D01G350200 chr1D 80.488 328 54 9 1082 1404 258984450 258984128 6.630000e-60 243
18 TraesCS4D01G350200 chr1B 80.000 325 61 4 1082 1404 353941976 353942298 3.090000e-58 237
19 TraesCS4D01G350200 chr5D 84.211 133 16 5 3967 4098 346660277 346660405 2.510000e-24 124


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G350200 chr4D 502570313 502576932 6619 False 12225.000000 12225 100.000000 1 6620 1 chr4D.!!$F1 6619
1 TraesCS4D01G350200 chr4B 646967263 646973867 6604 False 1700.750000 3701 89.068500 1 6620 4 chr4B.!!$F1 6619
2 TraesCS4D01G350200 chr5A 685987688 685995389 7701 False 974.714286 1873 87.266000 133 6620 7 chr5A.!!$F1 6487
3 TraesCS4D01G350200 chr7B 478483920 478486777 2857 True 213.666667 289 83.486333 1090 4099 3 chr7B.!!$R1 3009

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
718 828 0.397535 CCAGCCAGCCCACCATATTT 60.398 55.000 0.00 0.0 0.00 1.40 F
1638 1801 0.098376 CGTGGTGCGAGTAGTAGTCC 59.902 60.000 0.00 0.0 44.77 3.85 F
2271 3262 0.031616 TTCCCACCCTTTGTTGCCTT 60.032 50.000 0.00 0.0 0.00 4.35 F
2506 3511 0.584396 GCCGAATTGTGTCGTGTTGA 59.416 50.000 0.00 0.0 39.43 3.18 F
2633 3653 1.065418 CCGAATGGAGCCTAACCTTGT 60.065 52.381 0.00 0.0 37.49 3.16 F
2732 3850 1.079336 GCCGTCTAGGGTCCACAAC 60.079 63.158 0.00 0.0 41.48 3.32 F
3895 6078 1.218704 CACAATTGGATCCATCCCCCT 59.781 52.381 17.06 0.0 46.59 4.79 F
4699 6903 1.063266 TGGTTTCAATCCATAGGGGGC 60.063 52.381 0.00 0.0 37.22 5.80 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1983 2226 0.037734 CGGTTAGCCCCATATTCCCC 59.962 60.000 0.00 0.0 0.00 4.81 R
3213 5344 0.249911 GTGCGAACTGTCCCAACTCT 60.250 55.000 0.00 0.0 0.00 3.24 R
3419 5550 0.955919 AAGCTTACAGGCGCAAGGAC 60.956 55.000 10.83 0.0 37.29 3.85 R
3843 5984 1.439679 GCTGTAGGAAACAACCTCCG 58.560 55.000 0.00 0.0 41.00 4.63 R
4164 6348 1.794116 CAGTGTAACCGTAACCAACCG 59.206 52.381 0.00 0.0 37.80 4.44 R
4495 6690 2.096713 GTGCAAGTTCTACTGCTTGTCG 60.097 50.000 0.00 0.0 42.76 4.35 R
5409 7631 0.889994 CCTGCAGCACAAAGGCAATA 59.110 50.000 8.66 0.0 37.06 1.90 R
6306 8617 0.179045 CCTCGGCCTGATTGGTTAGG 60.179 60.000 0.00 0.0 38.35 2.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
61 68 5.975693 AAAGAACAGTTCAAGGACAACAA 57.024 34.783 15.85 0.00 0.00 2.83
62 69 6.530019 AAAGAACAGTTCAAGGACAACAAT 57.470 33.333 15.85 0.00 0.00 2.71
68 75 5.221303 ACAGTTCAAGGACAACAATGGATTG 60.221 40.000 0.00 0.00 43.26 2.67
70 77 5.010012 AGTTCAAGGACAACAATGGATTGAC 59.990 40.000 6.37 0.00 40.14 3.18
77 84 4.665451 ACAACAATGGATTGACTCATGGA 58.335 39.130 6.37 0.00 40.14 3.41
88 95 2.028658 TGACTCATGGACTGAAGAGCAC 60.029 50.000 0.00 0.00 32.14 4.40
114 121 2.221981 CACAAGCTCAGACGTCTTTTCC 59.778 50.000 17.26 4.76 0.00 3.13
115 122 2.158957 ACAAGCTCAGACGTCTTTTCCA 60.159 45.455 17.26 0.00 0.00 3.53
116 123 2.156343 AGCTCAGACGTCTTTTCCAC 57.844 50.000 17.26 2.52 0.00 4.02
117 124 1.149148 GCTCAGACGTCTTTTCCACC 58.851 55.000 17.26 0.00 0.00 4.61
118 125 1.540363 GCTCAGACGTCTTTTCCACCA 60.540 52.381 17.26 0.00 0.00 4.17
119 126 2.408050 CTCAGACGTCTTTTCCACCAG 58.592 52.381 17.26 0.92 0.00 4.00
121 128 1.129058 AGACGTCTTTTCCACCAGGT 58.871 50.000 13.58 0.00 35.89 4.00
122 129 1.202651 AGACGTCTTTTCCACCAGGTG 60.203 52.381 13.58 13.35 35.89 4.00
123 130 0.818040 ACGTCTTTTCCACCAGGTGC 60.818 55.000 14.98 0.00 35.89 5.01
124 131 0.817634 CGTCTTTTCCACCAGGTGCA 60.818 55.000 14.98 0.00 35.89 4.57
125 132 1.620822 GTCTTTTCCACCAGGTGCAT 58.379 50.000 14.98 0.00 35.89 3.96
126 133 1.270550 GTCTTTTCCACCAGGTGCATG 59.729 52.381 14.98 0.60 35.89 4.06
127 134 0.604578 CTTTTCCACCAGGTGCATGG 59.395 55.000 14.98 4.73 46.47 3.66
128 135 1.470996 TTTTCCACCAGGTGCATGGC 61.471 55.000 14.98 0.00 44.80 4.40
129 136 2.370459 TTTCCACCAGGTGCATGGCT 62.370 55.000 14.98 0.00 44.80 4.75
130 137 2.753043 CCACCAGGTGCATGGCTC 60.753 66.667 14.98 0.00 44.80 4.70
131 138 2.353958 CACCAGGTGCATGGCTCT 59.646 61.111 6.67 0.00 44.80 4.09
151 159 2.684881 CTGTGGCAGTGAAAGTTTCAGT 59.315 45.455 18.56 18.46 43.88 3.41
175 225 8.677300 AGTCGATTGCACTGAAATAAAATGTAT 58.323 29.630 0.00 0.00 0.00 2.29
176 226 9.929722 GTCGATTGCACTGAAATAAAATGTATA 57.070 29.630 0.00 0.00 0.00 1.47
204 254 3.737774 CAGCAGGATACATACATCACACG 59.262 47.826 0.00 0.00 41.41 4.49
228 293 1.399440 CACAGCTCGTCCCAAATGATG 59.601 52.381 0.00 0.00 0.00 3.07
238 303 3.067180 GTCCCAAATGATGCATCGTGAAT 59.933 43.478 21.88 6.80 0.00 2.57
319 387 4.688511 AGAACAACAGACTAGTCGCTAG 57.311 45.455 17.07 11.22 39.72 3.42
407 480 4.760047 TCCTCTTCTTGCGCCGCC 62.760 66.667 6.63 0.00 0.00 6.13
452 525 3.933722 CAGCCTCGCCATCGGGAT 61.934 66.667 0.00 0.00 38.83 3.85
457 530 2.762043 TCGCCATCGGGATCCACA 60.762 61.111 15.23 0.00 35.59 4.17
678 788 3.586892 CTCGAGACCTTGGACCTAAAAC 58.413 50.000 6.58 0.00 0.00 2.43
718 828 0.397535 CCAGCCAGCCCACCATATTT 60.398 55.000 0.00 0.00 0.00 1.40
719 829 1.035139 CAGCCAGCCCACCATATTTC 58.965 55.000 0.00 0.00 0.00 2.17
721 831 1.006998 AGCCAGCCCACCATATTTCAA 59.993 47.619 0.00 0.00 0.00 2.69
722 832 1.136891 GCCAGCCCACCATATTTCAAC 59.863 52.381 0.00 0.00 0.00 3.18
723 833 2.455557 CCAGCCCACCATATTTCAACA 58.544 47.619 0.00 0.00 0.00 3.33
724 834 3.033184 CCAGCCCACCATATTTCAACAT 58.967 45.455 0.00 0.00 0.00 2.71
725 835 4.214310 CCAGCCCACCATATTTCAACATA 58.786 43.478 0.00 0.00 0.00 2.29
726 836 4.279169 CCAGCCCACCATATTTCAACATAG 59.721 45.833 0.00 0.00 0.00 2.23
727 837 4.889409 CAGCCCACCATATTTCAACATAGT 59.111 41.667 0.00 0.00 0.00 2.12
728 838 4.889409 AGCCCACCATATTTCAACATAGTG 59.111 41.667 0.00 0.00 0.00 2.74
729 839 4.887071 GCCCACCATATTTCAACATAGTGA 59.113 41.667 0.00 0.00 0.00 3.41
808 918 0.447801 CAGAAAGGGGCGTTCATTCG 59.552 55.000 0.00 0.00 0.00 3.34
809 919 0.676782 AGAAAGGGGCGTTCATTCGG 60.677 55.000 0.00 0.00 0.00 4.30
1392 1508 0.320697 AACTCAACGGCTACAGGGTC 59.679 55.000 0.00 0.00 0.00 4.46
1409 1525 1.271762 GGTCAGAAAACCCTACCCACC 60.272 57.143 0.00 0.00 32.82 4.61
1410 1526 1.069775 TCAGAAAACCCTACCCACCC 58.930 55.000 0.00 0.00 0.00 4.61
1422 1538 3.272042 CCACCCCCATTGACCCCA 61.272 66.667 0.00 0.00 0.00 4.96
1444 1560 2.300152 TGTTCTGACCGCTTCTCTGAAT 59.700 45.455 0.00 0.00 30.93 2.57
1453 1569 3.686726 CCGCTTCTCTGAATTTTACTGCT 59.313 43.478 0.00 0.00 0.00 4.24
1471 1587 2.739913 TGCTTCGTTCCCATTAGTTTCG 59.260 45.455 0.00 0.00 0.00 3.46
1472 1588 2.997986 GCTTCGTTCCCATTAGTTTCGA 59.002 45.455 0.00 0.00 0.00 3.71
1492 1608 0.394352 CCTAGGATGTGGTGGTTGCC 60.394 60.000 1.05 0.00 0.00 4.52
1503 1619 1.545428 GGTGGTTGCCTTGATCTGTCA 60.545 52.381 0.00 0.00 0.00 3.58
1552 1714 4.101585 CCTGGCTGATCTGTCTGGTTTATA 59.898 45.833 18.29 0.00 0.00 0.98
1553 1715 5.221803 CCTGGCTGATCTGTCTGGTTTATAT 60.222 44.000 18.29 0.00 0.00 0.86
1554 1716 5.614308 TGGCTGATCTGTCTGGTTTATATG 58.386 41.667 5.76 0.00 0.00 1.78
1637 1800 0.522915 GCGTGGTGCGAGTAGTAGTC 60.523 60.000 0.00 0.00 44.77 2.59
1638 1801 0.098376 CGTGGTGCGAGTAGTAGTCC 59.902 60.000 0.00 0.00 44.77 3.85
1639 1802 1.461559 GTGGTGCGAGTAGTAGTCCT 58.538 55.000 0.00 0.00 0.00 3.85
1640 1803 1.817447 GTGGTGCGAGTAGTAGTCCTT 59.183 52.381 0.00 0.00 0.00 3.36
1641 1804 3.012518 GTGGTGCGAGTAGTAGTCCTTA 58.987 50.000 0.00 0.00 0.00 2.69
1642 1805 3.631227 GTGGTGCGAGTAGTAGTCCTTAT 59.369 47.826 0.00 0.00 0.00 1.73
1676 1851 9.946165 TTATACTGTTATCTGATAGTGTGTTCG 57.054 33.333 2.55 0.00 0.00 3.95
1686 1869 5.041287 TGATAGTGTGTTCGCTTACTATGC 58.959 41.667 0.00 0.00 36.70 3.14
1687 1870 3.594603 AGTGTGTTCGCTTACTATGCT 57.405 42.857 0.00 0.00 0.00 3.79
1692 1875 3.307242 GTGTTCGCTTACTATGCTCAAGG 59.693 47.826 0.00 0.00 0.00 3.61
1710 1893 3.287867 AGGATAGTGTTCCTTGCATGG 57.712 47.619 12.41 12.41 43.88 3.66
1740 1923 9.049523 TGATTTTCTATGCTGTGATGATAAGAC 57.950 33.333 0.00 0.00 0.00 3.01
1743 1926 6.966534 TCTATGCTGTGATGATAAGACAGA 57.033 37.500 0.00 0.00 39.64 3.41
1747 1930 6.732531 TGCTGTGATGATAAGACAGAAAAG 57.267 37.500 0.00 0.00 39.64 2.27
1751 1934 5.700832 TGTGATGATAAGACAGAAAAGCGTT 59.299 36.000 0.00 0.00 0.00 4.84
1772 1955 2.692557 TGTTACCTTGCATGTTGCTTGT 59.307 40.909 0.75 0.00 45.31 3.16
1779 1962 3.624326 TGCATGTTGCTTGTTCTACAC 57.376 42.857 0.75 0.00 45.31 2.90
1782 1965 3.250762 GCATGTTGCTTGTTCTACACTGA 59.749 43.478 0.00 0.00 40.96 3.41
1787 1970 4.558226 TGCTTGTTCTACACTGATGGAT 57.442 40.909 0.00 0.00 0.00 3.41
1790 1973 6.283694 TGCTTGTTCTACACTGATGGATATC 58.716 40.000 0.00 0.00 0.00 1.63
1791 1974 6.127083 TGCTTGTTCTACACTGATGGATATCA 60.127 38.462 4.83 0.00 40.92 2.15
1792 1975 6.201806 GCTTGTTCTACACTGATGGATATCAC 59.798 42.308 4.83 0.00 38.37 3.06
1811 1994 1.926511 CTGTTTGATCAGGGTGCGGC 61.927 60.000 0.00 0.00 0.00 6.53
1836 2019 5.360144 GCTGAACTCTAGGTGTTATCCAGTA 59.640 44.000 13.03 0.00 0.00 2.74
1841 2029 9.668497 GAACTCTAGGTGTTATCCAGTAATTTT 57.332 33.333 2.80 0.00 0.00 1.82
1854 2042 7.395190 TCCAGTAATTTTGGATGTCAATCTG 57.605 36.000 7.16 0.00 39.74 2.90
1855 2043 6.947733 TCCAGTAATTTTGGATGTCAATCTGT 59.052 34.615 7.16 0.00 39.74 3.41
1856 2044 7.031372 CCAGTAATTTTGGATGTCAATCTGTG 58.969 38.462 3.23 0.00 37.96 3.66
1858 2057 5.733620 AATTTTGGATGTCAATCTGTGCT 57.266 34.783 0.00 0.00 34.98 4.40
1861 2060 5.823209 TTTGGATGTCAATCTGTGCTATG 57.177 39.130 0.00 0.00 34.98 2.23
1872 2071 5.611128 ATCTGTGCTATGTCTCTGAATGT 57.389 39.130 0.00 0.00 0.00 2.71
1873 2072 4.752146 TCTGTGCTATGTCTCTGAATGTG 58.248 43.478 0.00 0.00 0.00 3.21
1880 2079 6.324770 TGCTATGTCTCTGAATGTGATCCTTA 59.675 38.462 0.00 0.00 0.00 2.69
1881 2080 6.644592 GCTATGTCTCTGAATGTGATCCTTAC 59.355 42.308 0.00 0.00 0.00 2.34
1882 2081 5.344743 TGTCTCTGAATGTGATCCTTACC 57.655 43.478 0.00 0.00 0.00 2.85
1892 2091 4.116113 TGTGATCCTTACCCCATTAGGTT 58.884 43.478 0.00 0.00 41.58 3.50
1896 2095 5.914716 TGATCCTTACCCCATTAGGTTATGT 59.085 40.000 0.00 0.00 41.58 2.29
1930 2129 8.752766 AAAGATCTCTGTGCACAATTAAATTG 57.247 30.769 21.98 6.56 45.59 2.32
1987 2230 5.010213 GTGCTAAAACACAAAATACAGGGGA 59.990 40.000 0.00 0.00 40.40 4.81
1988 2231 5.598830 TGCTAAAACACAAAATACAGGGGAA 59.401 36.000 0.00 0.00 0.00 3.97
2000 2243 1.780919 ACAGGGGAATATGGGGCTAAC 59.219 52.381 0.00 0.00 0.00 2.34
2001 2244 1.075536 CAGGGGAATATGGGGCTAACC 59.924 57.143 0.00 0.00 39.11 2.85
2003 2246 0.037734 GGGAATATGGGGCTAACCGG 59.962 60.000 0.00 0.00 41.60 5.28
2004 2247 0.037734 GGAATATGGGGCTAACCGGG 59.962 60.000 6.32 0.00 41.60 5.73
2015 2258 1.134580 GCTAACCGGGTAAGGGAACTC 60.135 57.143 6.32 0.00 42.68 3.01
2030 2273 5.953571 AGGGAACTCTTTTCCAGTATGTTT 58.046 37.500 5.44 0.00 40.32 2.83
2031 2274 6.004574 AGGGAACTCTTTTCCAGTATGTTTC 58.995 40.000 5.44 0.00 40.32 2.78
2034 2277 4.642429 ACTCTTTTCCAGTATGTTTCGCT 58.358 39.130 0.00 0.00 0.00 4.93
2038 2281 7.072177 TCTTTTCCAGTATGTTTCGCTATTG 57.928 36.000 0.00 0.00 0.00 1.90
2042 2285 4.873827 TCCAGTATGTTTCGCTATTGTTCC 59.126 41.667 0.00 0.00 0.00 3.62
2052 2297 3.190535 TCGCTATTGTTCCTTTTTGCCTC 59.809 43.478 0.00 0.00 0.00 4.70
2063 2308 4.895297 TCCTTTTTGCCTCTGATCAGTTTT 59.105 37.500 21.92 0.00 0.00 2.43
2073 2321 6.183360 GCCTCTGATCAGTTTTCTCATTACAC 60.183 42.308 21.92 0.00 0.00 2.90
2075 2323 7.388776 CCTCTGATCAGTTTTCTCATTACACAA 59.611 37.037 21.92 0.00 0.00 3.33
2101 2939 1.270550 CAGACTTGGATTGGTGCCAAC 59.729 52.381 5.72 1.05 40.32 3.77
2162 3000 5.502079 TCCCAGTTTGTAAAAGACAGACAA 58.498 37.500 1.82 0.00 43.94 3.18
2188 3026 6.209391 CCCTGTCTAATCACCAATTTTCACTT 59.791 38.462 0.00 0.00 0.00 3.16
2190 3028 7.040478 CCTGTCTAATCACCAATTTTCACTTCA 60.040 37.037 0.00 0.00 0.00 3.02
2191 3029 8.231692 TGTCTAATCACCAATTTTCACTTCAA 57.768 30.769 0.00 0.00 0.00 2.69
2192 3030 8.859090 TGTCTAATCACCAATTTTCACTTCAAT 58.141 29.630 0.00 0.00 0.00 2.57
2193 3031 9.132521 GTCTAATCACCAATTTTCACTTCAATG 57.867 33.333 0.00 0.00 0.00 2.82
2194 3032 6.790285 AATCACCAATTTTCACTTCAATGC 57.210 33.333 0.00 0.00 0.00 3.56
2196 3034 6.647334 TCACCAATTTTCACTTCAATGCTA 57.353 33.333 0.00 0.00 0.00 3.49
2197 3035 7.230849 TCACCAATTTTCACTTCAATGCTAT 57.769 32.000 0.00 0.00 0.00 2.97
2207 3198 5.945784 TCACTTCAATGCTATTGCTACCTTT 59.054 36.000 0.00 0.00 40.48 3.11
2210 3201 6.434028 ACTTCAATGCTATTGCTACCTTTTCA 59.566 34.615 0.00 0.00 40.48 2.69
2212 3203 4.907879 ATGCTATTGCTACCTTTTCAGC 57.092 40.909 0.00 0.00 40.48 4.26
2242 3233 0.110644 CTCGCGCCTCTGTGTTTTTC 60.111 55.000 0.00 0.00 0.00 2.29
2259 3250 2.757099 CTGGCATGCCTTCCCACC 60.757 66.667 35.53 8.82 36.94 4.61
2271 3262 0.031616 TTCCCACCCTTTGTTGCCTT 60.032 50.000 0.00 0.00 0.00 4.35
2299 3290 9.819267 GTATATGTTTCTAGGGTCCATAATAGC 57.181 37.037 0.00 0.00 0.00 2.97
2329 3321 6.924612 TGGTTCTGTGATTCAAATGTGAAATG 59.075 34.615 1.55 0.00 46.66 2.32
2375 3369 9.899226 GCTATTAGGATCATTTGAATGGTTTAC 57.101 33.333 4.05 0.00 37.03 2.01
2413 3407 4.097741 AGCACACTCACAATTTACTTTGCA 59.902 37.500 0.00 0.00 0.00 4.08
2495 3500 3.564511 CCAGTTTGTAGTTGCCGAATTG 58.435 45.455 0.00 0.00 0.00 2.32
2499 3504 3.889196 TTGTAGTTGCCGAATTGTGTC 57.111 42.857 0.00 0.00 0.00 3.67
2506 3511 0.584396 GCCGAATTGTGTCGTGTTGA 59.416 50.000 0.00 0.00 39.43 3.18
2511 3516 4.339429 CGAATTGTGTCGTGTTGAACTTT 58.661 39.130 0.00 0.00 36.26 2.66
2514 3519 6.504180 CGAATTGTGTCGTGTTGAACTTTTTC 60.504 38.462 0.00 0.00 36.26 2.29
2615 3635 1.068588 TCATTATCCTCCGCAACTCCG 59.931 52.381 0.00 0.00 0.00 4.63
2618 3638 1.410004 TATCCTCCGCAACTCCGAAT 58.590 50.000 0.00 0.00 0.00 3.34
2630 3650 3.317280 TCCGAATGGAGCCTAACCT 57.683 52.632 0.00 0.00 40.17 3.50
2633 3653 1.065418 CCGAATGGAGCCTAACCTTGT 60.065 52.381 0.00 0.00 37.49 3.16
2634 3654 2.280628 CGAATGGAGCCTAACCTTGTC 58.719 52.381 0.00 0.00 0.00 3.18
2635 3655 2.354704 CGAATGGAGCCTAACCTTGTCA 60.355 50.000 0.00 0.00 0.00 3.58
2659 3775 1.919654 TGGCCTGCTGGTTTAAGGATA 59.080 47.619 11.69 0.00 32.43 2.59
2666 3782 3.332485 TGCTGGTTTAAGGATAGGGTGTT 59.668 43.478 0.00 0.00 0.00 3.32
2683 3801 2.610374 GTGTTGGCAGTGTTTCGTCTAA 59.390 45.455 0.00 0.00 0.00 2.10
2706 3824 3.310774 CACAATGTGTGCTCTAGGTATGC 59.689 47.826 5.00 0.00 41.89 3.14
2707 3825 3.055167 ACAATGTGTGCTCTAGGTATGCA 60.055 43.478 0.00 0.00 0.00 3.96
2708 3826 2.967599 TGTGTGCTCTAGGTATGCAG 57.032 50.000 0.00 0.00 37.39 4.41
2732 3850 1.079336 GCCGTCTAGGGTCCACAAC 60.079 63.158 0.00 0.00 41.48 3.32
2737 3855 2.824341 CGTCTAGGGTCCACAACTACTT 59.176 50.000 0.00 0.00 0.00 2.24
2818 3939 9.223099 CTGTTAATCATGTAATCTCCATGCATA 57.777 33.333 0.00 0.00 39.60 3.14
2844 3965 6.178324 GCCTATAACAACAGTTTAGGAAGGT 58.822 40.000 11.58 0.00 33.08 3.50
2849 3971 6.877611 AACAACAGTTTAGGAAGGTATGTG 57.122 37.500 0.00 0.00 0.00 3.21
2868 3990 7.334421 GGTATGTGGTGTTGAATATAGGCATAG 59.666 40.741 0.00 0.00 0.00 2.23
2869 3991 5.063204 TGTGGTGTTGAATATAGGCATAGC 58.937 41.667 0.00 0.00 0.00 2.97
2873 4129 6.878923 TGGTGTTGAATATAGGCATAGCATAC 59.121 38.462 0.00 0.00 0.00 2.39
2968 5088 5.278120 GGTGTAATATATTTGTTCGTGGCCC 60.278 44.000 2.68 0.00 0.00 5.80
2987 5107 2.291153 CCCTGGTGAGTTGAATGGTGAT 60.291 50.000 0.00 0.00 0.00 3.06
2993 5113 4.095483 GGTGAGTTGAATGGTGATGTCATC 59.905 45.833 5.83 5.83 0.00 2.92
3003 5133 8.092687 TGAATGGTGATGTCATCTATGTATCAG 58.907 37.037 13.90 0.00 35.17 2.90
3005 5135 7.601705 TGGTGATGTCATCTATGTATCAGAA 57.398 36.000 13.90 3.58 35.17 3.02
3081 5212 7.327064 AGAGAGCATCAGAATGGGTTATAAT 57.673 36.000 0.00 0.00 37.82 1.28
3096 5227 6.951198 TGGGTTATAATGACATTGGTGACTTT 59.049 34.615 11.05 0.00 0.00 2.66
3213 5344 3.208594 GCATGTGATTCTGGTCAGCATA 58.791 45.455 0.00 0.00 0.00 3.14
3228 5359 3.055819 TCAGCATAGAGTTGGGACAGTTC 60.056 47.826 0.00 0.00 42.39 3.01
3398 5529 7.496529 CAGAAATCCTGTTCTGTTTCTTGTA 57.503 36.000 6.75 0.00 46.28 2.41
3452 5583 7.640240 CGCCTGTAAGCTTTTAAGTTGATATTC 59.360 37.037 3.20 0.00 0.00 1.75
3566 5698 3.069289 TGCTAGTTCTGTTCATGCAGTG 58.931 45.455 0.00 0.00 37.70 3.66
3578 5710 2.156917 CATGCAGTGCCTCTTTCAAGA 58.843 47.619 13.72 0.00 0.00 3.02
3593 5725 8.586570 CTCTTTCAAGAGCCAGTAGTATATTG 57.413 38.462 3.62 0.00 45.26 1.90
3747 5887 4.940046 AGTCATTTGTGGATTAGACAGCAG 59.060 41.667 0.00 0.00 0.00 4.24
3793 5934 9.046296 GCTATCAATACTGTACTGCACTTTAAT 57.954 33.333 0.00 0.00 0.00 1.40
3831 5972 3.953612 TCTCTTTGTTGCAAATGGTCAGT 59.046 39.130 0.00 0.00 0.00 3.41
3879 6028 3.322514 GCCAGTAGTTCAGGCACAA 57.677 52.632 0.00 0.00 46.15 3.33
3881 6030 2.162681 GCCAGTAGTTCAGGCACAATT 58.837 47.619 0.00 0.00 46.15 2.32
3889 6038 2.762327 GTTCAGGCACAATTGGATCCAT 59.238 45.455 17.06 0.00 0.00 3.41
3890 6039 2.658285 TCAGGCACAATTGGATCCATC 58.342 47.619 17.06 0.95 0.00 3.51
3895 6078 1.218704 CACAATTGGATCCATCCCCCT 59.781 52.381 17.06 0.00 46.59 4.79
3950 6134 5.954335 AGTAAAATAGGCAATGTCTTGTGC 58.046 37.500 0.00 0.00 40.14 4.57
3968 6152 8.244113 GTCTTGTGCTTTTTGCCTAGTATAAAT 58.756 33.333 0.00 0.00 42.00 1.40
3994 6178 3.642848 TCTTGCTGAAATTTGCCCTTTCT 59.357 39.130 0.00 0.00 34.43 2.52
4141 6325 7.997482 AGGTTTACCTCTTGTTCTTCTTTTTC 58.003 34.615 0.00 0.00 44.77 2.29
4155 6339 4.370364 TCTTTTTCTGTTGTGTGCCTTC 57.630 40.909 0.00 0.00 0.00 3.46
4164 6348 2.472695 TGTGTGCCTTCTGTATGGTC 57.527 50.000 0.00 0.00 0.00 4.02
4188 6372 4.516321 GGTTGGTTACGGTTACACTGAAAT 59.484 41.667 0.00 0.00 0.00 2.17
4335 6519 4.246458 GGACAGCTTTTAGTACTCCAGTG 58.754 47.826 0.00 0.00 0.00 3.66
4343 6527 8.154856 AGCTTTTAGTACTCCAGTGTTTTATCA 58.845 33.333 0.00 0.00 0.00 2.15
4425 6609 6.403866 TGTGGAAGATTATGCAACTGTTTT 57.596 33.333 0.00 0.00 0.00 2.43
4495 6690 2.623416 GCCAATATACTGGAAACCCTGC 59.377 50.000 3.92 0.00 38.96 4.85
4566 6762 3.059166 GGCGCTGGCATAATTAAAATGG 58.941 45.455 7.64 0.00 42.47 3.16
4577 6773 9.593134 GGCATAATTAAAATGGTGTATTCAACA 57.407 29.630 0.00 0.00 45.79 3.33
4674 6872 6.126883 TGTTTTCTAGAAGGAAAGGTGTCTGA 60.127 38.462 5.12 0.00 36.69 3.27
4691 6889 4.892345 TGTCTGACAATTGGTTTCAATCCA 59.108 37.500 8.27 0.00 42.29 3.41
4699 6903 1.063266 TGGTTTCAATCCATAGGGGGC 60.063 52.381 0.00 0.00 37.22 5.80
4802 7006 1.928868 CCCTTTCTTGGCAATGAGGT 58.071 50.000 17.20 0.00 0.00 3.85
4814 7018 6.757897 TGGCAATGAGGTTAAAGTCATTAG 57.242 37.500 11.41 8.53 40.64 1.73
4847 7051 6.401903 GCTTGTGTGTTCAGATATGACTCTTG 60.402 42.308 0.00 0.00 0.00 3.02
4858 7062 7.015974 TCAGATATGACTCTTGGATGCATTAGT 59.984 37.037 0.00 2.21 0.00 2.24
4974 7178 7.309133 CCATGAAAGCTTGATTACCTGTACAAA 60.309 37.037 0.00 0.00 0.00 2.83
5009 7229 1.915141 AGTTGGGCTCCAAGTCATTG 58.085 50.000 6.88 0.00 42.88 2.82
5036 7256 3.619038 GTGTCACTGCTAGATTAGGTTGC 59.381 47.826 0.00 0.00 0.00 4.17
5338 7558 3.615496 CCGAGAACAAAATACAGGTACCG 59.385 47.826 6.18 4.16 0.00 4.02
5367 7587 9.635520 AAAAAGATTTCTCATCTTGTTGCATAG 57.364 29.630 0.08 0.00 38.29 2.23
5409 7631 7.148407 CGTATTGTTATTCTGACCTGCTTCTTT 60.148 37.037 0.00 0.00 0.00 2.52
5410 7632 9.162764 GTATTGTTATTCTGACCTGCTTCTTTA 57.837 33.333 0.00 0.00 0.00 1.85
5413 7635 8.044060 TGTTATTCTGACCTGCTTCTTTATTG 57.956 34.615 0.00 0.00 0.00 1.90
5419 7642 4.022068 TGACCTGCTTCTTTATTGCCTTTG 60.022 41.667 0.00 0.00 0.00 2.77
5433 7656 4.892965 TTTGTGCTGCAGGCCCGT 62.893 61.111 17.12 0.00 40.92 5.28
5520 7743 1.299648 CCTCCAGACCGGCAATGAA 59.700 57.895 0.00 0.00 33.14 2.57
5602 7825 1.202818 AGAAGAACTGGCCTGGACAAC 60.203 52.381 14.82 0.00 0.00 3.32
5645 7868 6.072452 GCTCTGAGTTAAATGCTAAAAGGTGT 60.072 38.462 6.53 0.00 0.00 4.16
5776 8008 4.348168 TCTTCTTTCTGTTGGCTCTTAGGT 59.652 41.667 0.00 0.00 0.00 3.08
5778 8010 5.818678 TCTTTCTGTTGGCTCTTAGGTTA 57.181 39.130 0.00 0.00 0.00 2.85
5780 8012 6.173339 TCTTTCTGTTGGCTCTTAGGTTATG 58.827 40.000 0.00 0.00 0.00 1.90
5794 8028 2.164219 AGGTTATGAAATGTTGCTGGCG 59.836 45.455 0.00 0.00 0.00 5.69
5841 8080 5.396548 GCATCTGGAGATATGATATGCCTGT 60.397 44.000 0.00 0.00 33.78 4.00
5878 8117 0.602562 ATGCCGTTCCATGTGGTTTG 59.397 50.000 0.00 0.00 36.34 2.93
5899 8138 3.316868 TGGAAAGTTCTTTTAACCGGCAG 59.683 43.478 0.00 0.00 0.00 4.85
5943 8228 1.679153 GGTTGGTGAAATGTCAACCGT 59.321 47.619 0.00 0.00 46.98 4.83
5945 8230 0.665835 TGGTGAAATGTCAACCGTGC 59.334 50.000 0.00 0.00 41.16 5.34
6014 8299 1.672881 GCTGCTCTGTGTGACTTGTTT 59.327 47.619 0.00 0.00 0.00 2.83
6015 8300 2.286654 GCTGCTCTGTGTGACTTGTTTC 60.287 50.000 0.00 0.00 0.00 2.78
6057 8347 0.742505 ATGGAATCTTGCGCATGTGG 59.257 50.000 21.14 8.27 0.00 4.17
6130 8440 3.521560 CTGTCTATTGCCTCGTTGCTTA 58.478 45.455 1.05 0.00 0.00 3.09
6131 8441 4.122776 CTGTCTATTGCCTCGTTGCTTAT 58.877 43.478 1.05 0.00 0.00 1.73
6185 8496 1.841663 GAAGCAACGTCGCACATGGT 61.842 55.000 0.00 0.00 0.00 3.55
6190 8501 1.823169 AACGTCGCACATGGTAGGGT 61.823 55.000 0.00 0.00 0.00 4.34
6191 8502 1.079405 CGTCGCACATGGTAGGGTT 60.079 57.895 0.00 0.00 0.00 4.11
6192 8503 0.173935 CGTCGCACATGGTAGGGTTA 59.826 55.000 0.00 0.00 0.00 2.85
6193 8504 1.202486 CGTCGCACATGGTAGGGTTAT 60.202 52.381 0.00 0.00 0.00 1.89
6194 8505 2.210116 GTCGCACATGGTAGGGTTATG 58.790 52.381 0.00 0.00 0.00 1.90
6195 8506 2.112190 TCGCACATGGTAGGGTTATGA 58.888 47.619 0.00 0.00 0.00 2.15
6196 8507 2.159014 TCGCACATGGTAGGGTTATGAC 60.159 50.000 0.00 0.00 0.00 3.06
6197 8508 2.419436 CGCACATGGTAGGGTTATGACA 60.419 50.000 0.00 0.00 0.00 3.58
6198 8509 3.206150 GCACATGGTAGGGTTATGACAG 58.794 50.000 0.00 0.00 0.00 3.51
6199 8510 3.118408 GCACATGGTAGGGTTATGACAGA 60.118 47.826 0.00 0.00 0.00 3.41
6200 8511 4.444876 GCACATGGTAGGGTTATGACAGAT 60.445 45.833 0.00 0.00 0.00 2.90
6233 8544 9.362911 CGATTCTCAAAATAATCTTCATTCGTC 57.637 33.333 0.00 0.00 31.29 4.20
6304 8615 1.097547 AGCCTTGTCTGTGTGTGTGC 61.098 55.000 0.00 0.00 0.00 4.57
6305 8616 1.643292 CCTTGTCTGTGTGTGTGCG 59.357 57.895 0.00 0.00 0.00 5.34
6306 8617 1.010797 CTTGTCTGTGTGTGTGCGC 60.011 57.895 0.00 0.00 0.00 6.09
6324 8635 3.386543 CCTAACCAATCAGGCCGAG 57.613 57.895 0.00 0.00 43.14 4.63
6383 8694 6.918892 TCTACAAATATGAACCGGACAATG 57.081 37.500 9.46 8.91 0.00 2.82
6396 8714 3.222287 ACAATGTGTTGTGGGGCTT 57.778 47.368 0.00 0.00 46.43 4.35
6442 8760 1.569708 GCTCTCTGCTGGAATTCTCG 58.430 55.000 5.23 0.00 38.95 4.04
6478 8804 3.286751 CGTTGGTGGTGGTGCTGG 61.287 66.667 0.00 0.00 0.00 4.85
6602 8928 1.563655 GATCGCGAATCTGCAGCAG 59.436 57.895 15.24 17.10 34.15 4.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 7.455641 TGTTGTCCTTGAACTGTTCTTTAAA 57.544 32.000 20.18 6.49 0.00 1.52
38 39 7.416213 CCATTGTTGTCCTTGAACTGTTCTTTA 60.416 37.037 20.18 6.31 0.00 1.85
42 49 4.338118 TCCATTGTTGTCCTTGAACTGTTC 59.662 41.667 13.49 13.49 0.00 3.18
55 62 4.460382 GTCCATGAGTCAATCCATTGTTGT 59.540 41.667 0.00 0.00 38.84 3.32
58 65 4.019051 TCAGTCCATGAGTCAATCCATTGT 60.019 41.667 0.00 0.00 34.97 2.71
61 68 4.472470 TCTTCAGTCCATGAGTCAATCCAT 59.528 41.667 0.00 0.00 39.68 3.41
62 69 3.840078 TCTTCAGTCCATGAGTCAATCCA 59.160 43.478 0.00 0.00 39.68 3.41
68 75 2.028658 TGTGCTCTTCAGTCCATGAGTC 60.029 50.000 0.00 0.00 39.68 3.36
70 77 2.619147 CTGTGCTCTTCAGTCCATGAG 58.381 52.381 0.00 0.00 39.68 2.90
77 84 0.178767 TGTGTGCTGTGCTCTTCAGT 59.821 50.000 0.00 0.00 35.60 3.41
88 95 0.877649 ACGTCTGAGCTTGTGTGCTG 60.878 55.000 0.00 0.00 44.17 4.41
114 121 2.044555 CAGAGCCATGCACCTGGTG 61.045 63.158 22.46 22.46 38.63 4.17
115 122 2.353958 CAGAGCCATGCACCTGGT 59.646 61.111 8.13 0.00 38.63 4.00
116 123 2.044555 CACAGAGCCATGCACCTGG 61.045 63.158 1.68 1.68 36.40 4.45
117 124 2.044555 CCACAGAGCCATGCACCTG 61.045 63.158 0.00 6.86 37.45 4.00
118 125 2.353958 CCACAGAGCCATGCACCT 59.646 61.111 0.00 0.00 0.00 4.00
119 126 3.446570 GCCACAGAGCCATGCACC 61.447 66.667 0.00 0.00 0.00 5.01
121 128 2.360726 CTGCCACAGAGCCATGCA 60.361 61.111 0.00 0.00 32.44 3.96
122 129 2.360852 ACTGCCACAGAGCCATGC 60.361 61.111 0.78 0.00 35.18 4.06
123 130 0.607217 TTCACTGCCACAGAGCCATG 60.607 55.000 0.78 0.00 35.18 3.66
124 131 0.111061 TTTCACTGCCACAGAGCCAT 59.889 50.000 0.78 0.00 35.18 4.40
125 132 0.535780 CTTTCACTGCCACAGAGCCA 60.536 55.000 0.78 0.00 35.18 4.75
126 133 0.536006 ACTTTCACTGCCACAGAGCC 60.536 55.000 0.78 0.00 35.18 4.70
127 134 1.312815 AACTTTCACTGCCACAGAGC 58.687 50.000 0.78 0.00 35.18 4.09
128 135 2.945008 TGAAACTTTCACTGCCACAGAG 59.055 45.455 0.78 0.00 34.08 3.35
129 136 2.945008 CTGAAACTTTCACTGCCACAGA 59.055 45.455 0.78 0.00 35.46 3.41
130 137 2.684881 ACTGAAACTTTCACTGCCACAG 59.315 45.455 0.00 0.00 35.46 3.66
131 138 2.682856 GACTGAAACTTTCACTGCCACA 59.317 45.455 0.00 0.00 35.46 4.17
137 144 3.876914 TGCAATCGACTGAAACTTTCACT 59.123 39.130 0.00 0.00 35.46 3.41
151 159 9.929722 GTATACATTTTATTTCAGTGCAATCGA 57.070 29.630 0.00 0.00 0.00 3.59
175 225 1.806496 ATGTATCCTGCTGCTGGGTA 58.194 50.000 23.07 18.58 0.00 3.69
176 226 1.417890 GTATGTATCCTGCTGCTGGGT 59.582 52.381 23.07 19.62 0.00 4.51
204 254 1.444119 TTTGGGACGAGCTGTGTTGC 61.444 55.000 0.00 0.00 0.00 4.17
238 303 9.577110 CGACTAGTAATAATTTGTCTGGTGTTA 57.423 33.333 0.00 0.00 0.00 2.41
407 480 4.864334 GGTGCAGGGCGGAGATGG 62.864 72.222 0.00 0.00 0.00 3.51
409 482 4.101448 GTGGTGCAGGGCGGAGAT 62.101 66.667 0.00 0.00 0.00 2.75
419 492 2.523168 TGAGACGGAGGTGGTGCA 60.523 61.111 0.00 0.00 0.00 4.57
422 495 2.997897 GGCTGAGACGGAGGTGGT 60.998 66.667 0.00 0.00 0.00 4.16
432 505 3.531207 CCGATGGCGAGGCTGAGA 61.531 66.667 0.00 0.00 40.82 3.27
620 693 2.721167 CGGAGATGAGGGCGGTGAA 61.721 63.158 0.00 0.00 0.00 3.18
721 831 8.470805 CCGAAATAGCCTCTTATATCACTATGT 58.529 37.037 0.00 0.00 0.00 2.29
722 832 7.436673 GCCGAAATAGCCTCTTATATCACTATG 59.563 40.741 0.00 0.00 0.00 2.23
723 833 7.493367 GCCGAAATAGCCTCTTATATCACTAT 58.507 38.462 0.00 0.00 0.00 2.12
724 834 6.864342 GCCGAAATAGCCTCTTATATCACTA 58.136 40.000 0.00 0.00 0.00 2.74
725 835 5.725362 GCCGAAATAGCCTCTTATATCACT 58.275 41.667 0.00 0.00 0.00 3.41
760 870 1.135228 GCGTTGGCCCAATAATTCGTT 60.135 47.619 0.00 0.00 0.00 3.85
808 918 1.408969 TTTGTTCTCAACTTGGGCCC 58.591 50.000 17.59 17.59 32.93 5.80
809 919 2.483013 GGTTTTGTTCTCAACTTGGGCC 60.483 50.000 0.00 0.00 32.93 5.80
1392 1508 0.039180 GGGGTGGGTAGGGTTTTCTG 59.961 60.000 0.00 0.00 0.00 3.02
1407 1523 1.451372 AACATGGGGTCAATGGGGGT 61.451 55.000 0.00 0.00 0.00 4.95
1409 1525 0.336048 AGAACATGGGGTCAATGGGG 59.664 55.000 0.00 0.00 0.00 4.96
1410 1526 1.005805 TCAGAACATGGGGTCAATGGG 59.994 52.381 0.00 0.00 0.00 4.00
1422 1538 1.895798 TCAGAGAAGCGGTCAGAACAT 59.104 47.619 0.00 0.00 0.00 2.71
1444 1560 5.310451 ACTAATGGGAACGAAGCAGTAAAA 58.690 37.500 0.00 0.00 0.00 1.52
1453 1569 3.007182 AGGTCGAAACTAATGGGAACGAA 59.993 43.478 0.00 0.00 0.00 3.85
1471 1587 1.679032 GCAACCACCACATCCTAGGTC 60.679 57.143 9.08 0.00 35.52 3.85
1472 1588 0.328258 GCAACCACCACATCCTAGGT 59.672 55.000 9.08 0.00 39.10 3.08
1503 1619 1.000896 CACGGGAGGCCAATTCCTT 60.001 57.895 5.01 0.00 36.38 3.36
1552 1714 5.152623 ACCAATCCGTCGATCATAATCAT 57.847 39.130 0.00 0.00 31.76 2.45
1553 1715 4.600692 ACCAATCCGTCGATCATAATCA 57.399 40.909 0.00 0.00 31.76 2.57
1554 1716 5.465390 TCAAACCAATCCGTCGATCATAATC 59.535 40.000 0.00 0.00 0.00 1.75
1560 1723 2.936498 ACATCAAACCAATCCGTCGATC 59.064 45.455 0.00 0.00 0.00 3.69
1657 1820 6.973474 AGTAAGCGAACACACTATCAGATAAC 59.027 38.462 0.00 0.00 0.00 1.89
1664 1839 5.282510 AGCATAGTAAGCGAACACACTATC 58.717 41.667 0.00 0.00 33.08 2.08
1667 1842 3.056821 TGAGCATAGTAAGCGAACACACT 60.057 43.478 0.00 0.00 37.01 3.55
1676 1851 5.848406 ACACTATCCTTGAGCATAGTAAGC 58.152 41.667 0.00 0.00 34.63 3.09
1692 1875 1.678101 GCCCATGCAAGGAACACTATC 59.322 52.381 10.18 0.00 37.47 2.08
1740 1923 3.042887 GCAAGGTAACAACGCTTTTCTG 58.957 45.455 0.00 0.00 41.41 3.02
1743 1926 3.181480 ACATGCAAGGTAACAACGCTTTT 60.181 39.130 0.00 0.00 41.41 2.27
1747 1930 2.050691 CAACATGCAAGGTAACAACGC 58.949 47.619 0.00 0.00 41.41 4.84
1790 1973 0.518636 CGCACCCTGATCAAACAGTG 59.481 55.000 0.00 3.47 36.30 3.66
1791 1974 0.606401 CCGCACCCTGATCAAACAGT 60.606 55.000 0.00 0.00 36.30 3.55
1792 1975 1.926511 GCCGCACCCTGATCAAACAG 61.927 60.000 0.00 0.00 37.61 3.16
1811 1994 3.130516 TGGATAACACCTAGAGTTCAGCG 59.869 47.826 4.14 0.00 0.00 5.18
1836 2019 5.733620 AGCACAGATTGACATCCAAAATT 57.266 34.783 0.00 0.00 38.43 1.82
1841 2029 4.162888 AGACATAGCACAGATTGACATCCA 59.837 41.667 0.00 0.00 0.00 3.41
1847 2035 5.665916 TTCAGAGACATAGCACAGATTGA 57.334 39.130 0.00 0.00 0.00 2.57
1848 2036 5.816258 ACATTCAGAGACATAGCACAGATTG 59.184 40.000 0.00 0.00 0.00 2.67
1850 2038 5.128335 TCACATTCAGAGACATAGCACAGAT 59.872 40.000 0.00 0.00 0.00 2.90
1853 2041 4.806640 TCACATTCAGAGACATAGCACA 57.193 40.909 0.00 0.00 0.00 4.57
1854 2042 4.749099 GGATCACATTCAGAGACATAGCAC 59.251 45.833 0.00 0.00 0.00 4.40
1855 2043 4.652881 AGGATCACATTCAGAGACATAGCA 59.347 41.667 0.00 0.00 0.00 3.49
1856 2044 5.212532 AGGATCACATTCAGAGACATAGC 57.787 43.478 0.00 0.00 0.00 2.97
1858 2057 6.042093 GGGTAAGGATCACATTCAGAGACATA 59.958 42.308 0.00 0.00 0.00 2.29
1861 2060 4.443598 GGGGTAAGGATCACATTCAGAGAC 60.444 50.000 0.00 0.00 0.00 3.36
1872 2071 5.914716 ACATAACCTAATGGGGTAAGGATCA 59.085 40.000 0.00 0.00 41.17 2.92
1873 2072 6.449830 ACATAACCTAATGGGGTAAGGATC 57.550 41.667 0.00 0.00 41.17 3.36
1880 2079 7.046891 TCCTAAAAACATAACCTAATGGGGT 57.953 36.000 0.00 0.00 42.05 4.95
1881 2080 7.964666 TTCCTAAAAACATAACCTAATGGGG 57.035 36.000 0.00 0.00 40.03 4.96
1882 2081 9.869757 CTTTTCCTAAAAACATAACCTAATGGG 57.130 33.333 0.00 0.00 34.38 4.00
1892 2091 8.730680 GCACAGAGATCTTTTCCTAAAAACATA 58.269 33.333 0.00 0.00 31.23 2.29
1896 2095 6.545666 TGTGCACAGAGATCTTTTCCTAAAAA 59.454 34.615 17.42 0.00 33.42 1.94
1962 2200 5.221342 CCCCTGTATTTTGTGTTTTAGCACA 60.221 40.000 0.00 0.00 46.30 4.57
1964 2202 5.141182 TCCCCTGTATTTTGTGTTTTAGCA 58.859 37.500 0.00 0.00 0.00 3.49
1966 2209 9.801873 CATATTCCCCTGTATTTTGTGTTTTAG 57.198 33.333 0.00 0.00 0.00 1.85
1974 2217 3.578282 GCCCCATATTCCCCTGTATTTTG 59.422 47.826 0.00 0.00 0.00 2.44
1979 2222 2.983898 GTTAGCCCCATATTCCCCTGTA 59.016 50.000 0.00 0.00 0.00 2.74
1983 2226 0.037734 CGGTTAGCCCCATATTCCCC 59.962 60.000 0.00 0.00 0.00 4.81
1987 2230 2.121478 TACCCGGTTAGCCCCATATT 57.879 50.000 0.00 0.00 0.00 1.28
1988 2231 1.982958 CTTACCCGGTTAGCCCCATAT 59.017 52.381 0.00 0.00 0.00 1.78
2000 2243 2.617276 GGAAAAGAGTTCCCTTACCCGG 60.617 54.545 0.00 0.00 32.48 5.73
2001 2244 2.039348 TGGAAAAGAGTTCCCTTACCCG 59.961 50.000 2.76 0.00 37.79 5.28
2003 2246 4.368565 ACTGGAAAAGAGTTCCCTTACC 57.631 45.455 2.76 0.00 37.79 2.85
2004 2247 6.473758 ACATACTGGAAAAGAGTTCCCTTAC 58.526 40.000 2.76 0.00 37.79 2.34
2015 2258 6.842163 ACAATAGCGAAACATACTGGAAAAG 58.158 36.000 0.00 0.00 0.00 2.27
2030 2273 3.153919 AGGCAAAAAGGAACAATAGCGA 58.846 40.909 0.00 0.00 0.00 4.93
2031 2274 3.191371 AGAGGCAAAAAGGAACAATAGCG 59.809 43.478 0.00 0.00 0.00 4.26
2034 2277 6.009589 TGATCAGAGGCAAAAAGGAACAATA 58.990 36.000 0.00 0.00 0.00 1.90
2038 2281 3.823304 ACTGATCAGAGGCAAAAAGGAAC 59.177 43.478 29.27 0.00 0.00 3.62
2042 2285 6.081872 AGAAAACTGATCAGAGGCAAAAAG 57.918 37.500 29.27 0.00 0.00 2.27
2052 2297 8.315391 TCTTGTGTAATGAGAAAACTGATCAG 57.685 34.615 21.37 21.37 0.00 2.90
2063 2308 4.593206 AGTCTGGGTTCTTGTGTAATGAGA 59.407 41.667 0.00 0.00 0.00 3.27
2073 2321 2.821969 CCAATCCAAGTCTGGGTTCTTG 59.178 50.000 0.00 0.00 42.95 3.02
2075 2323 2.065799 ACCAATCCAAGTCTGGGTTCT 58.934 47.619 0.00 0.00 42.95 3.01
2103 2941 2.031157 GGTGTGTAAATGTGTGAGCCAC 60.031 50.000 0.00 0.00 44.78 5.01
2116 2954 9.349713 GGGAATAAATCAGATAATGGTGTGTAA 57.650 33.333 0.00 0.00 0.00 2.41
2121 2959 8.469309 AACTGGGAATAAATCAGATAATGGTG 57.531 34.615 0.00 0.00 33.19 4.17
2122 2960 8.917088 CAAACTGGGAATAAATCAGATAATGGT 58.083 33.333 0.00 0.00 33.19 3.55
2140 2978 5.449999 GGTTGTCTGTCTTTTACAAACTGGG 60.450 44.000 0.00 0.00 37.73 4.45
2141 2979 5.449999 GGGTTGTCTGTCTTTTACAAACTGG 60.450 44.000 0.00 0.00 40.03 4.00
2162 3000 5.476945 GTGAAAATTGGTGATTAGACAGGGT 59.523 40.000 0.00 0.00 0.00 4.34
2188 3026 5.163622 GCTGAAAAGGTAGCAATAGCATTGA 60.164 40.000 11.52 0.00 45.49 2.57
2190 3028 4.706476 TGCTGAAAAGGTAGCAATAGCATT 59.294 37.500 0.00 0.00 46.06 3.56
2191 3029 4.272489 TGCTGAAAAGGTAGCAATAGCAT 58.728 39.130 0.00 0.00 46.06 3.79
2192 3030 3.684908 TGCTGAAAAGGTAGCAATAGCA 58.315 40.909 0.00 0.00 46.06 3.49
2212 3203 2.705826 GCGCGAGAAGGCAGAATG 59.294 61.111 12.10 0.00 40.87 2.67
2259 3250 7.378181 AGAAACATATACAAAGGCAACAAAGG 58.622 34.615 0.00 0.00 41.41 3.11
2299 3290 4.898829 TTTGAATCACAGAACCACACTG 57.101 40.909 0.00 0.00 40.68 3.66
2375 3369 5.449812 GAGTGTGCTCACAATCCTATGTGG 61.450 50.000 20.16 0.76 46.94 4.17
2376 3370 3.620374 GAGTGTGCTCACAATCCTATGTG 59.380 47.826 20.16 1.10 46.94 3.21
2495 3500 9.659830 AAATATAGAAAAAGTTCAACACGACAC 57.340 29.630 0.00 0.00 36.09 3.67
2535 3554 9.781633 TTACTGCTTGTTTAACCAACTTATCTA 57.218 29.630 0.00 0.00 36.21 1.98
2536 3555 8.685838 TTACTGCTTGTTTAACCAACTTATCT 57.314 30.769 0.00 0.00 36.21 1.98
2604 3623 3.383229 TCCATTCGGAGTTGCGGA 58.617 55.556 0.00 0.00 35.91 5.54
2615 3635 3.350219 TGACAAGGTTAGGCTCCATTC 57.650 47.619 0.00 0.00 0.00 2.67
2618 3638 4.385199 CCATATTGACAAGGTTAGGCTCCA 60.385 45.833 0.00 0.00 0.00 3.86
2630 3650 1.005805 ACCAGCAGGCCATATTGACAA 59.994 47.619 5.01 0.00 39.06 3.18
2633 3653 2.530460 AAACCAGCAGGCCATATTGA 57.470 45.000 5.01 0.00 39.06 2.57
2634 3654 3.068590 CCTTAAACCAGCAGGCCATATTG 59.931 47.826 5.01 0.00 39.06 1.90
2635 3655 3.052944 TCCTTAAACCAGCAGGCCATATT 60.053 43.478 5.01 0.00 39.06 1.28
2659 3775 1.101049 CGAAACACTGCCAACACCCT 61.101 55.000 0.00 0.00 0.00 4.34
2666 3782 2.605837 TGTTAGACGAAACACTGCCA 57.394 45.000 0.00 0.00 34.50 4.92
2706 3824 1.609555 GACCCTAGACGGCATCTACTG 59.390 57.143 0.00 0.00 39.04 2.74
2707 3825 1.479021 GGACCCTAGACGGCATCTACT 60.479 57.143 0.00 0.00 39.04 2.57
2708 3826 0.960286 GGACCCTAGACGGCATCTAC 59.040 60.000 0.00 0.00 39.04 2.59
2716 3834 2.444421 AGTAGTTGTGGACCCTAGACG 58.556 52.381 0.00 0.00 0.00 4.18
2811 3932 5.065914 ACTGTTGTTATAGGCCTATGCATG 58.934 41.667 31.81 21.92 40.13 4.06
2818 3939 6.382919 TTCCTAAACTGTTGTTATAGGCCT 57.617 37.500 11.78 11.78 37.14 5.19
2844 3965 6.878923 GCTATGCCTATATTCAACACCACATA 59.121 38.462 0.00 0.00 0.00 2.29
2849 3971 6.036083 CGTATGCTATGCCTATATTCAACACC 59.964 42.308 0.00 0.00 0.00 4.16
2961 5081 2.669569 CAACTCACCAGGGCCACG 60.670 66.667 6.18 0.00 0.00 4.94
2968 5088 3.415212 ACATCACCATTCAACTCACCAG 58.585 45.455 0.00 0.00 0.00 4.00
2987 5107 8.753133 AGTCACTTTTCTGATACATAGATGACA 58.247 33.333 0.00 0.00 34.92 3.58
2993 5113 7.038048 TGCAGAGTCACTTTTCTGATACATAG 58.962 38.462 5.73 0.00 42.67 2.23
3003 5133 8.186821 AGCAATATAAATGCAGAGTCACTTTTC 58.813 33.333 14.21 0.00 46.22 2.29
3005 5135 7.636150 AGCAATATAAATGCAGAGTCACTTT 57.364 32.000 14.21 0.00 46.22 2.66
3024 5155 5.726980 TGGTCTGCATTTAAAGAAGCAAT 57.273 34.783 12.08 0.00 36.44 3.56
3081 5212 5.769662 AGCATAGAAAAAGTCACCAATGTCA 59.230 36.000 0.00 0.00 0.00 3.58
3096 5227 1.565759 AGGTGGCCATGAGCATAGAAA 59.434 47.619 9.72 0.00 46.50 2.52
3213 5344 0.249911 GTGCGAACTGTCCCAACTCT 60.250 55.000 0.00 0.00 0.00 3.24
3419 5550 0.955919 AAGCTTACAGGCGCAAGGAC 60.956 55.000 10.83 0.00 37.29 3.85
3468 5599 9.593134 GCATACAGAAGATCGATTTATAGGAAT 57.407 33.333 0.00 0.00 0.00 3.01
3474 5605 8.893219 TTCTTGCATACAGAAGATCGATTTAT 57.107 30.769 0.00 0.00 0.00 1.40
3536 5668 5.240891 TGAACAGAACTAGCAAGATGGAAG 58.759 41.667 0.00 0.00 0.00 3.46
3538 5670 4.890158 TGAACAGAACTAGCAAGATGGA 57.110 40.909 0.00 0.00 0.00 3.41
3540 5672 4.393990 TGCATGAACAGAACTAGCAAGATG 59.606 41.667 0.00 0.00 0.00 2.90
3578 5710 7.937394 GGGTTTATCAACAATATACTACTGGCT 59.063 37.037 0.00 0.00 34.15 4.75
3593 5725 6.887626 TGAAACAAGTAGGGGTTTATCAAC 57.112 37.500 0.00 0.00 37.35 3.18
3708 5848 9.169468 CACAAATGACTATTGACACTTGTAAAC 57.831 33.333 6.22 0.00 36.53 2.01
3718 5858 8.492673 TGTCTAATCCACAAATGACTATTGAC 57.507 34.615 0.00 0.00 0.00 3.18
3747 5887 4.936891 AGCTGTCAGGAAAATTTTGTGAC 58.063 39.130 24.00 24.00 38.41 3.67
3755 5895 7.341805 ACAGTATTGATAGCTGTCAGGAAAAT 58.658 34.615 13.22 6.55 38.96 1.82
3803 5944 7.054491 ACCATTTGCAACAAAGAGAGTAAAT 57.946 32.000 0.00 0.00 0.00 1.40
3819 5960 3.744426 ACGTAGTTACACTGACCATTTGC 59.256 43.478 0.00 0.00 37.78 3.68
3831 5972 3.146066 ACAACCTCCGTACGTAGTTACA 58.854 45.455 15.21 0.00 37.78 2.41
3843 5984 1.439679 GCTGTAGGAAACAACCTCCG 58.560 55.000 0.00 0.00 41.00 4.63
3863 6012 3.411446 TCCAATTGTGCCTGAACTACTG 58.589 45.455 4.43 0.00 0.00 2.74
3891 6040 6.262056 ACAACCCACTATCTATAAAAGGGG 57.738 41.667 0.00 0.00 39.15 4.79
3895 6078 9.589461 TTTTTGGACAACCCACTATCTATAAAA 57.411 29.630 0.00 0.00 46.62 1.52
3923 6106 7.538678 CACAAGACATTGCCTATTTTACTTGAC 59.461 37.037 0.00 0.00 40.27 3.18
3924 6107 7.592938 CACAAGACATTGCCTATTTTACTTGA 58.407 34.615 0.00 0.00 40.27 3.02
3925 6108 6.308766 GCACAAGACATTGCCTATTTTACTTG 59.691 38.462 0.00 0.00 40.27 3.16
3968 6152 5.743636 AGGGCAAATTTCAGCAAGAATAA 57.256 34.783 3.25 0.00 35.83 1.40
3986 6170 2.739379 CGAGAAACTTCAGAGAAAGGGC 59.261 50.000 0.00 0.00 0.00 5.19
3994 6178 3.253677 GTCCTGTCTCGAGAAACTTCAGA 59.746 47.826 24.12 12.15 0.00 3.27
4138 6322 2.722094 ACAGAAGGCACACAACAGAAA 58.278 42.857 0.00 0.00 0.00 2.52
4141 6325 2.485426 CCATACAGAAGGCACACAACAG 59.515 50.000 0.00 0.00 0.00 3.16
4155 6339 2.264813 CGTAACCAACCGACCATACAG 58.735 52.381 0.00 0.00 0.00 2.74
4164 6348 1.794116 CAGTGTAACCGTAACCAACCG 59.206 52.381 0.00 0.00 37.80 4.44
4335 6519 8.141268 TGAAAAGGTGGTCAAGAATGATAAAAC 58.859 33.333 0.00 0.00 38.01 2.43
4343 6527 3.117131 ACCCTGAAAAGGTGGTCAAGAAT 60.117 43.478 0.00 0.00 35.85 2.40
4434 6620 8.094548 TGTATTATATGTGGGCTCTGTTGATAC 58.905 37.037 0.00 0.00 0.00 2.24
4440 6626 5.163343 ACGTTGTATTATATGTGGGCTCTGT 60.163 40.000 0.00 0.00 0.00 3.41
4474 6660 2.623416 GCAGGGTTTCCAGTATATTGGC 59.377 50.000 9.38 0.00 38.16 4.52
4475 6661 2.878406 CGCAGGGTTTCCAGTATATTGG 59.122 50.000 7.96 7.96 39.70 3.16
4495 6690 2.096713 GTGCAAGTTCTACTGCTTGTCG 60.097 50.000 0.00 0.00 42.76 4.35
4566 6762 9.301153 AGAACACAAAGAAAATGTTGAATACAC 57.699 29.630 0.00 0.00 40.19 2.90
4577 6773 7.775561 ACTGTAAGAGGAGAACACAAAGAAAAT 59.224 33.333 0.00 0.00 37.43 1.82
4586 6782 4.585955 TGACACTGTAAGAGGAGAACAC 57.414 45.455 0.00 0.00 37.43 3.32
4649 6846 6.055588 CAGACACCTTTCCTTCTAGAAAACA 58.944 40.000 6.63 0.00 35.41 2.83
4674 6872 4.716287 CCCCTATGGATTGAAACCAATTGT 59.284 41.667 4.43 0.00 40.93 2.71
4691 6889 6.275461 AGAGTAATAGAATGATGCCCCCTAT 58.725 40.000 0.00 0.00 0.00 2.57
4769 6973 7.009179 CCAAGAAAGGGCTGTCTATATGATA 57.991 40.000 0.00 0.00 0.00 2.15
4770 6974 5.874093 CCAAGAAAGGGCTGTCTATATGAT 58.126 41.667 0.00 0.00 0.00 2.45
4814 7018 3.315191 TCTGAACACACAAGCTAAAAGGC 59.685 43.478 0.00 0.00 0.00 4.35
4902 7106 3.448301 AGGGCACATTAATTGACACCATG 59.552 43.478 0.00 0.00 0.00 3.66
4930 7134 9.191995 CTTTCATGGTATTTGGAACTGTAAAAC 57.808 33.333 0.00 0.00 0.00 2.43
4941 7145 6.980397 GGTAATCAAGCTTTCATGGTATTTGG 59.020 38.462 0.00 0.00 0.00 3.28
5009 7229 4.631813 CCTAATCTAGCAGTGACACAAACC 59.368 45.833 8.59 0.00 0.00 3.27
5045 7265 7.826260 ATTTATTTAACACAAATCGCTTGGG 57.174 32.000 0.00 0.00 44.74 4.12
5239 7459 1.131126 GCCATTGTGTTGAGATCCACG 59.869 52.381 0.00 0.00 34.28 4.94
5338 7558 9.248291 TGCAACAAGATGAGAAATCTTTTTAAC 57.752 29.630 0.00 0.00 36.32 2.01
5389 7611 6.969473 GCAATAAAGAAGCAGGTCAGAATAAC 59.031 38.462 0.00 0.00 0.00 1.89
5409 7631 0.889994 CCTGCAGCACAAAGGCAATA 59.110 50.000 8.66 0.00 37.06 1.90
5410 7632 1.669440 CCTGCAGCACAAAGGCAAT 59.331 52.632 8.66 0.00 37.06 3.56
5419 7642 1.595382 CTATACGGGCCTGCAGCAC 60.595 63.158 12.89 4.08 46.50 4.40
5433 7656 5.363868 CAGGATCTTGTTGTGGGAGTCTATA 59.636 44.000 0.00 0.00 0.00 1.31
5511 7734 6.426025 TGATATCTCTCTCAAATTCATTGCCG 59.574 38.462 3.98 0.00 38.98 5.69
5520 7743 5.901413 TGGCCTTGATATCTCTCTCAAAT 57.099 39.130 3.32 0.00 31.40 2.32
5602 7825 2.670414 GAGCTCACAAGTTCATCTTCCG 59.330 50.000 9.40 0.00 33.27 4.30
5645 7868 0.967887 CAAGCGGAGGAGGAGACAGA 60.968 60.000 0.00 0.00 0.00 3.41
5705 7933 1.566018 GGCAGTTCACCGAAACCTCG 61.566 60.000 0.00 0.00 45.02 4.63
5776 8008 2.276472 GCGCCAGCAACATTTCATAA 57.724 45.000 0.00 0.00 44.35 1.90
5778 8010 4.895854 GCGCCAGCAACATTTCAT 57.104 50.000 0.00 0.00 44.35 2.57
5794 8028 6.970043 TGCATAACTATTCATAAACCGTTTGC 59.030 34.615 6.77 0.00 0.00 3.68
5836 8071 1.180029 AATGAACATGGCAGACAGGC 58.820 50.000 0.00 0.00 44.50 4.85
5841 8080 3.368635 GGCATCAAAATGAACATGGCAGA 60.369 43.478 0.00 0.00 34.61 4.26
5878 8117 3.566742 TCTGCCGGTTAAAAGAACTTTCC 59.433 43.478 1.90 0.00 31.45 3.13
5916 8158 1.202359 ACATTTCACCAACCGTGCAAC 60.202 47.619 0.00 0.00 42.69 4.17
5919 8161 0.665835 TGACATTTCACCAACCGTGC 59.334 50.000 0.00 0.00 42.69 5.34
5926 8168 0.665835 GCACGGTTGACATTTCACCA 59.334 50.000 0.00 0.00 0.00 4.17
5943 8228 1.246649 CAAACCACCACATGCTAGCA 58.753 50.000 21.85 21.85 0.00 3.49
5945 8230 1.246649 TGCAAACCACCACATGCTAG 58.753 50.000 0.00 0.00 39.49 3.42
5979 8264 3.567164 AGAGCAGCCAAATGTGCATATAC 59.433 43.478 0.00 0.00 42.47 1.47
5988 8273 1.068748 GTCACACAGAGCAGCCAAATG 60.069 52.381 0.00 0.00 0.00 2.32
5990 8275 0.181114 AGTCACACAGAGCAGCCAAA 59.819 50.000 0.00 0.00 0.00 3.28
6014 8299 6.912203 TTGGCGATTAATAATCAAGTTCGA 57.088 33.333 12.82 0.00 37.78 3.71
6015 8300 7.113404 CCATTTGGCGATTAATAATCAAGTTCG 59.887 37.037 12.82 1.09 37.78 3.95
6057 8347 4.189188 CTGCGCTGGCCTGATTGC 62.189 66.667 14.77 13.59 38.85 3.56
6102 8412 2.801342 CGAGGCAATAGACAGCTCCTTC 60.801 54.545 0.00 0.00 0.00 3.46
6130 8440 2.237143 TCATCCTTTTGAGTCAGCGGAT 59.763 45.455 11.86 11.86 0.00 4.18
6131 8441 1.623311 TCATCCTTTTGAGTCAGCGGA 59.377 47.619 8.88 8.88 0.00 5.54
6185 8496 4.822350 CGTCTCTCATCTGTCATAACCCTA 59.178 45.833 0.00 0.00 0.00 3.53
6190 8501 6.951062 AGAATCGTCTCTCATCTGTCATAA 57.049 37.500 0.00 0.00 0.00 1.90
6191 8502 6.552859 GAGAATCGTCTCTCATCTGTCATA 57.447 41.667 10.41 0.00 45.99 2.15
6192 8503 5.437289 GAGAATCGTCTCTCATCTGTCAT 57.563 43.478 10.41 0.00 45.99 3.06
6193 8504 4.891627 GAGAATCGTCTCTCATCTGTCA 57.108 45.455 10.41 0.00 45.99 3.58
6274 8585 2.113243 GACAAGGCTCGTTGGGGTCT 62.113 60.000 7.16 0.00 0.00 3.85
6306 8617 0.179045 CCTCGGCCTGATTGGTTAGG 60.179 60.000 0.00 0.00 38.35 2.69
6327 8638 2.751837 GGAAGGAAAGGGGCTGCG 60.752 66.667 0.00 0.00 0.00 5.18
6328 8639 2.363018 GGGAAGGAAAGGGGCTGC 60.363 66.667 0.00 0.00 0.00 5.25
6329 8640 1.304617 GAGGGAAGGAAAGGGGCTG 59.695 63.158 0.00 0.00 0.00 4.85
6330 8641 1.931180 GGAGGGAAGGAAAGGGGCT 60.931 63.158 0.00 0.00 0.00 5.19
6331 8642 2.684104 GGAGGGAAGGAAAGGGGC 59.316 66.667 0.00 0.00 0.00 5.80
6335 8646 2.849318 AGATCAAGGGAGGGAAGGAAAG 59.151 50.000 0.00 0.00 0.00 2.62
6339 8650 2.188818 AGAGATCAAGGGAGGGAAGG 57.811 55.000 0.00 0.00 0.00 3.46
6383 8694 1.398692 TTCTTCAAGCCCCACAACAC 58.601 50.000 0.00 0.00 0.00 3.32
6396 8714 2.616960 CCCGTCGTCATGAATTCTTCA 58.383 47.619 7.05 0.00 45.01 3.02
6442 8760 1.226267 CGCACCAACACACACACAC 60.226 57.895 0.00 0.00 0.00 3.82
6478 8804 1.639298 GACCTGCGCCAACTGATGAC 61.639 60.000 4.18 0.00 0.00 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.