Multiple sequence alignment - TraesCS4D01G350100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G350100 chr4D 100.000 2360 0 0 1 2360 502572027 502569668 0.000000e+00 4359
1 TraesCS4D01G350100 chr4D 98.333 300 5 0 1755 2054 472513760 472513461 5.780000e-146 527
2 TraesCS4D01G350100 chr5A 90.486 1461 79 34 172 1583 685989137 685987688 0.000000e+00 1873
3 TraesCS4D01G350100 chr5A 88.715 319 19 8 2055 2357 685987494 685987177 7.960000e-100 374
4 TraesCS4D01G350100 chr5A 86.547 223 18 6 1 221 685989341 685989129 3.920000e-58 235
5 TraesCS4D01G350100 chr4B 93.973 896 36 9 1 887 646968937 646968051 0.000000e+00 1339
6 TraesCS4D01G350100 chr4B 84.572 888 79 30 925 1782 646968055 646967196 0.000000e+00 828
7 TraesCS4D01G350100 chr4B 83.172 309 31 14 2055 2360 646967235 646966945 1.800000e-66 263
8 TraesCS4D01G350100 chr1D 98.333 300 5 0 1755 2054 378313791 378313492 5.780000e-146 527
9 TraesCS4D01G350100 chr1D 80.488 328 54 9 312 634 258984128 258984450 2.340000e-60 243
10 TraesCS4D01G350100 chr2D 97.674 301 7 0 1755 2055 428860775 428860475 3.480000e-143 518
11 TraesCS4D01G350100 chrUn 95.724 304 10 3 1755 2056 30082392 30082694 9.800000e-134 486
12 TraesCS4D01G350100 chrUn 94.754 305 13 3 1755 2057 93236753 93236450 2.750000e-129 472
13 TraesCS4D01G350100 chr7D 98.134 268 5 0 1787 2054 65589222 65588955 3.550000e-128 468
14 TraesCS4D01G350100 chr7D 92.434 304 19 4 1755 2055 266213771 266214073 4.660000e-117 431
15 TraesCS4D01G350100 chr5B 92.929 297 21 0 1755 2051 18349938 18350234 1.300000e-117 433
16 TraesCS4D01G350100 chr6D 92.333 300 20 3 1755 2052 445182548 445182846 7.800000e-115 424
17 TraesCS4D01G350100 chr7B 83.125 320 50 3 309 626 478486460 478486777 2.970000e-74 289
18 TraesCS4D01G350100 chr1B 80.000 325 61 4 312 634 353942298 353941976 1.090000e-58 237
19 TraesCS4D01G350100 chr1A 78.594 313 63 4 324 634 341868206 341867896 1.110000e-48 204


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G350100 chr4D 502569668 502572027 2359 True 4359.000000 4359 100.000000 1 2360 1 chr4D.!!$R2 2359
1 TraesCS4D01G350100 chr5A 685987177 685989341 2164 True 827.333333 1873 88.582667 1 2357 3 chr5A.!!$R1 2356
2 TraesCS4D01G350100 chr4B 646966945 646968937 1992 True 810.000000 1339 87.239000 1 2360 3 chr4B.!!$R1 2359

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
322 369 0.03918 GGGGTGGGTAGGGTTTTCTG 59.961 60.0 0.0 0.0 0.0 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1758 1953 0.10741 AGCGGACAGAACCAACAACA 60.107 50.0 0.0 0.0 0.0 3.33 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 1.678101 GCCCATGCAAGGAACACTATC 59.322 52.381 10.18 0.00 37.47 2.08
38 39 5.848406 ACACTATCCTTGAGCATAGTAAGC 58.152 41.667 0.00 0.00 34.63 3.09
47 48 3.056821 TGAGCATAGTAAGCGAACACACT 60.057 43.478 0.00 0.00 37.01 3.55
50 51 5.282510 AGCATAGTAAGCGAACACACTATC 58.717 41.667 0.00 0.00 33.08 2.08
51 52 5.041287 GCATAGTAAGCGAACACACTATCA 58.959 41.667 0.00 0.00 33.08 2.15
53 54 6.495706 CATAGTAAGCGAACACACTATCAGA 58.504 40.000 0.00 0.00 33.08 3.27
57 58 6.973474 AGTAAGCGAACACACTATCAGATAAC 59.027 38.462 0.00 0.00 0.00 1.89
151 152 3.062099 CAGTACATCAAACCAATCCGTCG 59.938 47.826 0.00 0.00 0.00 5.12
154 155 2.936498 ACATCAAACCAATCCGTCGATC 59.064 45.455 0.00 0.00 0.00 3.69
211 258 1.000896 CACGGGAGGCCAATTCCTT 60.001 57.895 5.01 0.00 36.38 3.36
242 289 0.328258 GCAACCACCACATCCTAGGT 59.672 55.000 9.08 0.00 39.10 3.08
243 290 1.679032 GCAACCACCACATCCTAGGTC 60.679 57.143 9.08 0.00 35.52 3.85
261 308 3.007182 AGGTCGAAACTAATGGGAACGAA 59.993 43.478 0.00 0.00 0.00 3.85
270 317 5.310451 ACTAATGGGAACGAAGCAGTAAAA 58.690 37.500 0.00 0.00 0.00 1.52
292 339 1.895798 TCAGAGAAGCGGTCAGAACAT 59.104 47.619 0.00 0.00 0.00 2.71
304 351 1.005805 TCAGAACATGGGGTCAATGGG 59.994 52.381 0.00 0.00 0.00 4.00
306 353 0.687427 GAACATGGGGTCAATGGGGG 60.687 60.000 0.00 0.00 0.00 5.40
307 354 1.451372 AACATGGGGTCAATGGGGGT 61.451 55.000 0.00 0.00 0.00 4.95
322 369 0.039180 GGGGTGGGTAGGGTTTTCTG 59.961 60.000 0.00 0.00 0.00 3.02
905 958 2.483013 GGTTTTGTTCTCAACTTGGGCC 60.483 50.000 0.00 0.00 32.93 5.80
906 959 1.408969 TTTGTTCTCAACTTGGGCCC 58.591 50.000 17.59 17.59 32.93 5.80
954 1007 1.135228 GCGTTGGCCCAATAATTCGTT 60.135 47.619 0.00 0.00 0.00 3.85
989 1042 5.725362 GCCGAAATAGCCTCTTATATCACT 58.275 41.667 0.00 0.00 0.00 3.41
990 1043 6.864342 GCCGAAATAGCCTCTTATATCACTA 58.136 40.000 0.00 0.00 0.00 2.74
991 1044 7.493367 GCCGAAATAGCCTCTTATATCACTAT 58.507 38.462 0.00 0.00 0.00 2.12
992 1045 7.436673 GCCGAAATAGCCTCTTATATCACTATG 59.563 40.741 0.00 0.00 0.00 2.23
994 1047 9.862371 CGAAATAGCCTCTTATATCACTATGTT 57.138 33.333 0.00 0.00 0.00 2.71
1094 1184 2.721167 CGGAGATGAGGGCGGTGAA 61.721 63.158 0.00 0.00 0.00 3.18
1282 1372 3.531207 CCGATGGCGAGGCTGAGA 61.531 66.667 0.00 0.00 40.82 3.27
1292 1382 2.997897 GGCTGAGACGGAGGTGGT 60.998 66.667 0.00 0.00 0.00 4.16
1295 1385 2.523168 TGAGACGGAGGTGGTGCA 60.523 61.111 0.00 0.00 0.00 4.57
1305 1395 4.101448 GTGGTGCAGGGCGGAGAT 62.101 66.667 0.00 0.00 0.00 2.75
1307 1397 4.864334 GGTGCAGGGCGGAGATGG 62.864 72.222 0.00 0.00 0.00 3.51
1398 1493 6.500684 AAAATCCATGTGTTACTGTGCTAG 57.499 37.500 0.00 0.00 0.00 3.42
1402 1497 2.060326 TGTGTTACTGTGCTAGCGAC 57.940 50.000 10.77 10.03 0.00 5.19
1476 1574 9.577110 CGACTAGTAATAATTTGTCTGGTGTTA 57.423 33.333 0.00 0.00 0.00 2.41
1510 1623 1.444119 TTTGGGACGAGCTGTGTTGC 61.444 55.000 0.00 0.00 0.00 4.17
1538 1651 1.417890 GTATGTATCCTGCTGCTGGGT 59.582 52.381 23.07 19.62 0.00 4.51
1539 1652 1.806496 ATGTATCCTGCTGCTGGGTA 58.194 50.000 23.07 18.58 0.00 3.69
1563 1718 9.929722 GTATACATTTTATTTCAGTGCAATCGA 57.070 29.630 0.00 0.00 0.00 3.59
1577 1733 3.876914 TGCAATCGACTGAAACTTTCACT 59.123 39.130 0.00 0.00 35.46 3.41
1583 1739 2.682856 GACTGAAACTTTCACTGCCACA 59.317 45.455 0.00 0.00 35.46 4.17
1584 1740 2.684881 ACTGAAACTTTCACTGCCACAG 59.315 45.455 0.00 0.00 35.46 3.66
1585 1741 2.945008 CTGAAACTTTCACTGCCACAGA 59.055 45.455 0.78 0.00 35.46 3.41
1586 1742 2.945008 TGAAACTTTCACTGCCACAGAG 59.055 45.455 0.78 0.00 34.08 3.35
1587 1743 1.312815 AACTTTCACTGCCACAGAGC 58.687 50.000 0.78 0.00 35.18 4.09
1588 1744 0.536006 ACTTTCACTGCCACAGAGCC 60.536 55.000 0.78 0.00 35.18 4.70
1598 1785 2.044555 CACAGAGCCATGCACCTGG 61.045 63.158 1.68 1.68 36.40 4.45
1599 1786 2.353958 CAGAGCCATGCACCTGGT 59.646 61.111 8.13 0.00 38.63 4.00
1644 1833 2.619147 CTGTGCTCTTCAGTCCATGAG 58.381 52.381 0.00 0.00 39.68 2.90
1646 1835 2.028658 TGTGCTCTTCAGTCCATGAGTC 60.029 50.000 0.00 0.00 39.68 3.36
1652 1841 3.840078 TCTTCAGTCCATGAGTCAATCCA 59.160 43.478 0.00 0.00 39.68 3.41
1653 1842 4.472470 TCTTCAGTCCATGAGTCAATCCAT 59.528 41.667 0.00 0.00 39.68 3.41
1672 1861 4.338118 TCCATTGTTGTCCTTGAACTGTTC 59.662 41.667 13.49 13.49 0.00 3.18
1676 1865 7.416213 CCATTGTTGTCCTTGAACTGTTCTTTA 60.416 37.037 20.18 6.31 0.00 1.85
1679 1871 7.887381 TGTTGTCCTTGAACTGTTCTTTAAAA 58.113 30.769 20.18 6.16 0.00 1.52
1751 1946 1.705186 AGCCACAACCCAACTCTGTAT 59.295 47.619 0.00 0.00 0.00 2.29
1754 1949 4.018415 AGCCACAACCCAACTCTGTATTAT 60.018 41.667 0.00 0.00 0.00 1.28
1755 1950 4.705023 GCCACAACCCAACTCTGTATTATT 59.295 41.667 0.00 0.00 0.00 1.40
1756 1951 5.393027 GCCACAACCCAACTCTGTATTATTG 60.393 44.000 0.00 0.00 0.00 1.90
1757 1952 5.710099 CCACAACCCAACTCTGTATTATTGT 59.290 40.000 0.00 0.00 0.00 2.71
1758 1953 6.208599 CCACAACCCAACTCTGTATTATTGTT 59.791 38.462 0.00 0.00 0.00 2.83
1759 1954 7.083858 CACAACCCAACTCTGTATTATTGTTG 58.916 38.462 0.00 0.00 38.08 3.33
1760 1955 6.775629 ACAACCCAACTCTGTATTATTGTTGT 59.224 34.615 0.00 0.00 38.11 3.32
1761 1956 7.286775 ACAACCCAACTCTGTATTATTGTTGTT 59.713 33.333 0.00 0.00 39.40 2.83
1762 1957 7.214467 ACCCAACTCTGTATTATTGTTGTTG 57.786 36.000 0.00 0.00 37.04 3.33
1763 1958 6.775629 ACCCAACTCTGTATTATTGTTGTTGT 59.224 34.615 0.00 0.00 37.04 3.32
1764 1959 7.286775 ACCCAACTCTGTATTATTGTTGTTGTT 59.713 33.333 0.00 0.00 37.04 2.83
1765 1960 7.594758 CCCAACTCTGTATTATTGTTGTTGTTG 59.405 37.037 0.00 0.00 37.04 3.33
1766 1961 7.594758 CCAACTCTGTATTATTGTTGTTGTTGG 59.405 37.037 0.00 0.00 41.89 3.77
1767 1962 7.817418 ACTCTGTATTATTGTTGTTGTTGGT 57.183 32.000 0.00 0.00 0.00 3.67
1768 1963 8.232913 ACTCTGTATTATTGTTGTTGTTGGTT 57.767 30.769 0.00 0.00 0.00 3.67
1769 1964 8.349983 ACTCTGTATTATTGTTGTTGTTGGTTC 58.650 33.333 0.00 0.00 0.00 3.62
1770 1965 8.458573 TCTGTATTATTGTTGTTGTTGGTTCT 57.541 30.769 0.00 0.00 0.00 3.01
1771 1966 8.349245 TCTGTATTATTGTTGTTGTTGGTTCTG 58.651 33.333 0.00 0.00 0.00 3.02
1772 1967 8.001881 TGTATTATTGTTGTTGTTGGTTCTGT 57.998 30.769 0.00 0.00 0.00 3.41
1773 1968 8.132362 TGTATTATTGTTGTTGTTGGTTCTGTC 58.868 33.333 0.00 0.00 0.00 3.51
1774 1969 3.859411 TTGTTGTTGTTGGTTCTGTCC 57.141 42.857 0.00 0.00 0.00 4.02
1775 1970 1.740585 TGTTGTTGTTGGTTCTGTCCG 59.259 47.619 0.00 0.00 0.00 4.79
1776 1971 0.736053 TTGTTGTTGGTTCTGTCCGC 59.264 50.000 0.00 0.00 0.00 5.54
1777 1972 0.107410 TGTTGTTGGTTCTGTCCGCT 60.107 50.000 0.00 0.00 0.00 5.52
1778 1973 0.307760 GTTGTTGGTTCTGTCCGCTG 59.692 55.000 0.00 0.00 0.00 5.18
1779 1974 0.817634 TTGTTGGTTCTGTCCGCTGG 60.818 55.000 0.00 0.00 0.00 4.85
1780 1975 1.070786 GTTGGTTCTGTCCGCTGGA 59.929 57.895 0.00 0.00 0.00 3.86
1781 1976 0.951040 GTTGGTTCTGTCCGCTGGAG 60.951 60.000 0.00 0.00 29.39 3.86
1782 1977 1.407656 TTGGTTCTGTCCGCTGGAGT 61.408 55.000 0.00 0.00 29.39 3.85
1783 1978 1.371558 GGTTCTGTCCGCTGGAGTT 59.628 57.895 0.00 0.00 29.39 3.01
1784 1979 0.250338 GGTTCTGTCCGCTGGAGTTT 60.250 55.000 0.00 0.00 29.39 2.66
1785 1980 1.594331 GTTCTGTCCGCTGGAGTTTT 58.406 50.000 0.00 0.00 29.39 2.43
1786 1981 2.549349 GGTTCTGTCCGCTGGAGTTTTA 60.549 50.000 0.00 0.00 29.39 1.52
1787 1982 3.335579 GTTCTGTCCGCTGGAGTTTTAT 58.664 45.455 0.00 0.00 29.39 1.40
1788 1983 3.247006 TCTGTCCGCTGGAGTTTTATC 57.753 47.619 0.00 0.00 29.39 1.75
1789 1984 2.093658 TCTGTCCGCTGGAGTTTTATCC 60.094 50.000 0.00 0.00 40.03 2.59
1790 1985 1.906574 TGTCCGCTGGAGTTTTATCCT 59.093 47.619 0.00 0.00 40.29 3.24
1791 1986 2.093658 TGTCCGCTGGAGTTTTATCCTC 60.094 50.000 0.00 0.00 40.29 3.71
1792 1987 2.168728 GTCCGCTGGAGTTTTATCCTCT 59.831 50.000 0.00 0.00 40.29 3.69
1793 1988 3.383825 GTCCGCTGGAGTTTTATCCTCTA 59.616 47.826 0.00 0.00 40.29 2.43
1794 1989 3.637229 TCCGCTGGAGTTTTATCCTCTAG 59.363 47.826 0.00 0.00 40.29 2.43
1795 1990 3.637229 CCGCTGGAGTTTTATCCTCTAGA 59.363 47.826 5.15 0.00 39.22 2.43
1796 1991 4.500035 CCGCTGGAGTTTTATCCTCTAGAC 60.500 50.000 5.15 0.00 39.22 2.59
1797 1992 4.098044 CGCTGGAGTTTTATCCTCTAGACA 59.902 45.833 5.15 0.00 39.22 3.41
1798 1993 5.596845 GCTGGAGTTTTATCCTCTAGACAG 58.403 45.833 5.15 0.00 39.22 3.51
1799 1994 5.128008 GCTGGAGTTTTATCCTCTAGACAGT 59.872 44.000 5.15 0.00 39.22 3.55
1800 1995 6.351456 GCTGGAGTTTTATCCTCTAGACAGTT 60.351 42.308 5.15 0.00 39.22 3.16
1801 1996 7.554959 TGGAGTTTTATCCTCTAGACAGTTT 57.445 36.000 0.00 0.00 40.29 2.66
1802 1997 7.612677 TGGAGTTTTATCCTCTAGACAGTTTC 58.387 38.462 0.00 0.00 40.29 2.78
1803 1998 6.752815 GGAGTTTTATCCTCTAGACAGTTTCG 59.247 42.308 0.00 0.00 36.35 3.46
1804 1999 7.229581 AGTTTTATCCTCTAGACAGTTTCGT 57.770 36.000 0.00 0.00 0.00 3.85
1805 2000 7.314393 AGTTTTATCCTCTAGACAGTTTCGTC 58.686 38.462 0.00 0.00 36.08 4.20
1807 2002 4.974368 ATCCTCTAGACAGTTTCGTCTG 57.026 45.455 3.88 0.00 45.79 3.51
1809 2004 3.502595 TCCTCTAGACAGTTTCGTCTGTG 59.497 47.826 13.18 0.00 46.81 3.66
1810 2005 3.253677 CCTCTAGACAGTTTCGTCTGTGT 59.746 47.826 13.18 11.94 46.81 3.72
1811 2006 4.468643 CTCTAGACAGTTTCGTCTGTGTC 58.531 47.826 13.18 8.43 46.81 3.67
1812 2007 2.121116 AGACAGTTTCGTCTGTGTCG 57.879 50.000 13.18 0.00 46.81 4.35
1813 2008 1.404391 AGACAGTTTCGTCTGTGTCGT 59.596 47.619 13.18 0.00 46.81 4.34
1814 2009 1.517276 GACAGTTTCGTCTGTGTCGTG 59.483 52.381 13.18 0.00 46.81 4.35
1815 2010 1.135199 ACAGTTTCGTCTGTGTCGTGT 60.135 47.619 9.07 0.00 45.40 4.49
1816 2011 1.255342 CAGTTTCGTCTGTGTCGTGTG 59.745 52.381 0.00 0.00 0.00 3.82
1817 2012 0.575390 GTTTCGTCTGTGTCGTGTGG 59.425 55.000 0.00 0.00 0.00 4.17
1818 2013 0.173935 TTTCGTCTGTGTCGTGTGGT 59.826 50.000 0.00 0.00 0.00 4.16
1819 2014 0.526739 TTCGTCTGTGTCGTGTGGTG 60.527 55.000 0.00 0.00 0.00 4.17
1820 2015 1.949133 CGTCTGTGTCGTGTGGTGG 60.949 63.158 0.00 0.00 0.00 4.61
1821 2016 1.143183 GTCTGTGTCGTGTGGTGGT 59.857 57.895 0.00 0.00 0.00 4.16
1822 2017 0.461339 GTCTGTGTCGTGTGGTGGTT 60.461 55.000 0.00 0.00 0.00 3.67
1823 2018 0.461163 TCTGTGTCGTGTGGTGGTTG 60.461 55.000 0.00 0.00 0.00 3.77
1824 2019 0.742990 CTGTGTCGTGTGGTGGTTGT 60.743 55.000 0.00 0.00 0.00 3.32
1825 2020 0.535797 TGTGTCGTGTGGTGGTTGTA 59.464 50.000 0.00 0.00 0.00 2.41
1826 2021 1.214367 GTGTCGTGTGGTGGTTGTAG 58.786 55.000 0.00 0.00 0.00 2.74
1827 2022 0.825410 TGTCGTGTGGTGGTTGTAGT 59.175 50.000 0.00 0.00 0.00 2.73
1828 2023 1.214367 GTCGTGTGGTGGTTGTAGTG 58.786 55.000 0.00 0.00 0.00 2.74
1829 2024 0.825410 TCGTGTGGTGGTTGTAGTGT 59.175 50.000 0.00 0.00 0.00 3.55
1830 2025 1.202440 TCGTGTGGTGGTTGTAGTGTC 60.202 52.381 0.00 0.00 0.00 3.67
1831 2026 1.214367 GTGTGGTGGTTGTAGTGTCG 58.786 55.000 0.00 0.00 0.00 4.35
1832 2027 0.825410 TGTGGTGGTTGTAGTGTCGT 59.175 50.000 0.00 0.00 0.00 4.34
1833 2028 1.202440 TGTGGTGGTTGTAGTGTCGTC 60.202 52.381 0.00 0.00 0.00 4.20
1834 2029 1.112950 TGGTGGTTGTAGTGTCGTCA 58.887 50.000 0.00 0.00 0.00 4.35
1835 2030 1.067974 TGGTGGTTGTAGTGTCGTCAG 59.932 52.381 0.00 0.00 0.00 3.51
1836 2031 1.604693 GGTGGTTGTAGTGTCGTCAGG 60.605 57.143 0.00 0.00 0.00 3.86
1837 2032 1.068127 GTGGTTGTAGTGTCGTCAGGT 59.932 52.381 0.00 0.00 0.00 4.00
1838 2033 1.758280 TGGTTGTAGTGTCGTCAGGTT 59.242 47.619 0.00 0.00 0.00 3.50
1839 2034 2.168936 TGGTTGTAGTGTCGTCAGGTTT 59.831 45.455 0.00 0.00 0.00 3.27
1840 2035 3.200483 GGTTGTAGTGTCGTCAGGTTTT 58.800 45.455 0.00 0.00 0.00 2.43
1841 2036 3.246936 GGTTGTAGTGTCGTCAGGTTTTC 59.753 47.826 0.00 0.00 0.00 2.29
1842 2037 2.734670 TGTAGTGTCGTCAGGTTTTCG 58.265 47.619 0.00 0.00 0.00 3.46
1843 2038 1.454653 GTAGTGTCGTCAGGTTTTCGC 59.545 52.381 0.00 0.00 0.00 4.70
1844 2039 0.878961 AGTGTCGTCAGGTTTTCGCC 60.879 55.000 0.00 0.00 0.00 5.54
1845 2040 1.595929 TGTCGTCAGGTTTTCGCCC 60.596 57.895 0.00 0.00 0.00 6.13
1846 2041 2.031465 TCGTCAGGTTTTCGCCCC 59.969 61.111 0.00 0.00 0.00 5.80
1847 2042 2.281208 CGTCAGGTTTTCGCCCCA 60.281 61.111 0.00 0.00 0.00 4.96
1848 2043 2.613506 CGTCAGGTTTTCGCCCCAC 61.614 63.158 0.00 0.00 0.00 4.61
1849 2044 1.527380 GTCAGGTTTTCGCCCCACA 60.527 57.895 0.00 0.00 0.00 4.17
1850 2045 1.228124 TCAGGTTTTCGCCCCACAG 60.228 57.895 0.00 0.00 0.00 3.66
1851 2046 2.597510 AGGTTTTCGCCCCACAGC 60.598 61.111 0.00 0.00 0.00 4.40
1852 2047 2.597510 GGTTTTCGCCCCACAGCT 60.598 61.111 0.00 0.00 0.00 4.24
1853 2048 2.644992 GTTTTCGCCCCACAGCTG 59.355 61.111 13.48 13.48 0.00 4.24
1854 2049 1.896660 GTTTTCGCCCCACAGCTGA 60.897 57.895 23.35 0.00 0.00 4.26
1855 2050 1.074775 TTTTCGCCCCACAGCTGAT 59.925 52.632 23.35 1.19 0.00 2.90
1856 2051 0.326595 TTTTCGCCCCACAGCTGATA 59.673 50.000 23.35 0.00 0.00 2.15
1857 2052 0.107703 TTTCGCCCCACAGCTGATAG 60.108 55.000 23.35 9.63 0.00 2.08
1858 2053 1.264749 TTCGCCCCACAGCTGATAGT 61.265 55.000 23.35 0.00 0.00 2.12
1859 2054 1.227380 CGCCCCACAGCTGATAGTC 60.227 63.158 23.35 5.38 0.00 2.59
1860 2055 1.147153 GCCCCACAGCTGATAGTCC 59.853 63.158 23.35 0.00 0.00 3.85
1861 2056 1.443407 CCCCACAGCTGATAGTCCG 59.557 63.158 23.35 0.00 0.00 4.79
1862 2057 1.330655 CCCCACAGCTGATAGTCCGT 61.331 60.000 23.35 0.00 0.00 4.69
1863 2058 0.537188 CCCACAGCTGATAGTCCGTT 59.463 55.000 23.35 0.00 0.00 4.44
1864 2059 1.066143 CCCACAGCTGATAGTCCGTTT 60.066 52.381 23.35 0.00 0.00 3.60
1865 2060 2.271800 CCACAGCTGATAGTCCGTTTC 58.728 52.381 23.35 0.00 0.00 2.78
1866 2061 2.353704 CCACAGCTGATAGTCCGTTTCA 60.354 50.000 23.35 0.00 0.00 2.69
1867 2062 2.926200 CACAGCTGATAGTCCGTTTCAG 59.074 50.000 23.35 0.00 39.87 3.02
1868 2063 2.093973 ACAGCTGATAGTCCGTTTCAGG 60.094 50.000 23.35 0.00 37.84 3.86
1869 2064 1.482593 AGCTGATAGTCCGTTTCAGGG 59.517 52.381 0.00 0.00 37.84 4.45
1870 2065 1.207329 GCTGATAGTCCGTTTCAGGGT 59.793 52.381 0.00 0.00 37.84 4.34
1871 2066 2.354805 GCTGATAGTCCGTTTCAGGGTT 60.355 50.000 0.00 0.00 37.84 4.11
1872 2067 3.262420 CTGATAGTCCGTTTCAGGGTTG 58.738 50.000 0.00 0.00 34.55 3.77
1873 2068 2.635915 TGATAGTCCGTTTCAGGGTTGT 59.364 45.455 0.00 0.00 0.00 3.32
1874 2069 2.825861 TAGTCCGTTTCAGGGTTGTC 57.174 50.000 0.00 0.00 0.00 3.18
1875 2070 0.834612 AGTCCGTTTCAGGGTTGTCA 59.165 50.000 0.00 0.00 0.00 3.58
1876 2071 1.420138 AGTCCGTTTCAGGGTTGTCAT 59.580 47.619 0.00 0.00 0.00 3.06
1877 2072 1.535462 GTCCGTTTCAGGGTTGTCATG 59.465 52.381 0.00 0.00 0.00 3.07
1878 2073 0.240945 CCGTTTCAGGGTTGTCATGC 59.759 55.000 0.00 0.00 0.00 4.06
1879 2074 0.950836 CGTTTCAGGGTTGTCATGCA 59.049 50.000 0.00 0.00 0.00 3.96
1880 2075 1.069022 CGTTTCAGGGTTGTCATGCAG 60.069 52.381 0.00 0.00 0.00 4.41
1881 2076 1.956477 GTTTCAGGGTTGTCATGCAGT 59.044 47.619 0.00 0.00 0.00 4.40
1882 2077 1.608055 TTCAGGGTTGTCATGCAGTG 58.392 50.000 0.00 0.00 0.00 3.66
1883 2078 0.250858 TCAGGGTTGTCATGCAGTGG 60.251 55.000 0.00 0.00 0.00 4.00
1884 2079 1.075482 AGGGTTGTCATGCAGTGGG 59.925 57.895 0.00 0.00 0.00 4.61
1885 2080 1.228552 GGGTTGTCATGCAGTGGGT 60.229 57.895 0.00 0.00 0.00 4.51
1886 2081 0.827507 GGGTTGTCATGCAGTGGGTT 60.828 55.000 0.00 0.00 0.00 4.11
1887 2082 1.039856 GGTTGTCATGCAGTGGGTTT 58.960 50.000 0.00 0.00 0.00 3.27
1888 2083 1.000274 GGTTGTCATGCAGTGGGTTTC 60.000 52.381 0.00 0.00 0.00 2.78
1889 2084 1.000274 GTTGTCATGCAGTGGGTTTCC 60.000 52.381 0.00 0.00 0.00 3.13
1890 2085 0.478072 TGTCATGCAGTGGGTTTCCT 59.522 50.000 0.00 0.00 0.00 3.36
1891 2086 0.883833 GTCATGCAGTGGGTTTCCTG 59.116 55.000 0.00 0.00 0.00 3.86
1892 2087 0.251297 TCATGCAGTGGGTTTCCTGG 60.251 55.000 0.00 0.00 0.00 4.45
1893 2088 1.607467 ATGCAGTGGGTTTCCTGGC 60.607 57.895 0.00 0.00 0.00 4.85
1894 2089 3.365265 GCAGTGGGTTTCCTGGCG 61.365 66.667 0.00 0.00 0.00 5.69
1895 2090 2.429930 CAGTGGGTTTCCTGGCGA 59.570 61.111 0.00 0.00 0.00 5.54
1896 2091 1.002134 CAGTGGGTTTCCTGGCGAT 60.002 57.895 0.00 0.00 0.00 4.58
1897 2092 1.002134 AGTGGGTTTCCTGGCGATG 60.002 57.895 0.00 0.00 0.00 3.84
1898 2093 2.361104 TGGGTTTCCTGGCGATGC 60.361 61.111 0.00 0.00 0.00 3.91
1899 2094 2.361104 GGGTTTCCTGGCGATGCA 60.361 61.111 0.00 0.00 0.00 3.96
1900 2095 2.700773 GGGTTTCCTGGCGATGCAC 61.701 63.158 0.00 0.00 0.00 4.57
1901 2096 2.700773 GGTTTCCTGGCGATGCACC 61.701 63.158 0.00 0.00 0.00 5.01
1902 2097 1.971167 GTTTCCTGGCGATGCACCA 60.971 57.895 0.00 0.00 35.40 4.17
1903 2098 1.228398 TTTCCTGGCGATGCACCAA 60.228 52.632 0.00 0.00 36.56 3.67
1904 2099 1.523154 TTTCCTGGCGATGCACCAAC 61.523 55.000 0.00 0.00 36.56 3.77
1905 2100 3.443045 CCTGGCGATGCACCAACC 61.443 66.667 0.00 0.00 36.56 3.77
1906 2101 3.443045 CTGGCGATGCACCAACCC 61.443 66.667 0.00 0.00 36.56 4.11
1910 2105 2.125310 CGATGCACCAACCCGCTA 60.125 61.111 0.00 0.00 0.00 4.26
1911 2106 2.461110 CGATGCACCAACCCGCTAC 61.461 63.158 0.00 0.00 0.00 3.58
1912 2107 2.045340 ATGCACCAACCCGCTACC 60.045 61.111 0.00 0.00 0.00 3.18
1913 2108 3.638592 ATGCACCAACCCGCTACCC 62.639 63.158 0.00 0.00 0.00 3.69
1915 2110 4.419921 CACCAACCCGCTACCCCC 62.420 72.222 0.00 0.00 0.00 5.40
1916 2111 4.669773 ACCAACCCGCTACCCCCT 62.670 66.667 0.00 0.00 0.00 4.79
1917 2112 3.335729 CCAACCCGCTACCCCCTT 61.336 66.667 0.00 0.00 0.00 3.95
1918 2113 2.761160 CAACCCGCTACCCCCTTT 59.239 61.111 0.00 0.00 0.00 3.11
1919 2114 1.378119 CAACCCGCTACCCCCTTTC 60.378 63.158 0.00 0.00 0.00 2.62
1920 2115 1.848895 AACCCGCTACCCCCTTTCA 60.849 57.895 0.00 0.00 0.00 2.69
1921 2116 1.848886 AACCCGCTACCCCCTTTCAG 61.849 60.000 0.00 0.00 0.00 3.02
1922 2117 2.298661 CCCGCTACCCCCTTTCAGT 61.299 63.158 0.00 0.00 0.00 3.41
1923 2118 1.221021 CCGCTACCCCCTTTCAGTC 59.779 63.158 0.00 0.00 0.00 3.51
1924 2119 1.265454 CCGCTACCCCCTTTCAGTCT 61.265 60.000 0.00 0.00 0.00 3.24
1925 2120 0.175989 CGCTACCCCCTTTCAGTCTC 59.824 60.000 0.00 0.00 0.00 3.36
1926 2121 0.542333 GCTACCCCCTTTCAGTCTCC 59.458 60.000 0.00 0.00 0.00 3.71
1927 2122 1.902141 GCTACCCCCTTTCAGTCTCCT 60.902 57.143 0.00 0.00 0.00 3.69
1928 2123 2.552367 CTACCCCCTTTCAGTCTCCTT 58.448 52.381 0.00 0.00 0.00 3.36
1929 2124 1.834540 ACCCCCTTTCAGTCTCCTTT 58.165 50.000 0.00 0.00 0.00 3.11
1930 2125 1.425448 ACCCCCTTTCAGTCTCCTTTG 59.575 52.381 0.00 0.00 0.00 2.77
1931 2126 1.539157 CCCCTTTCAGTCTCCTTTGC 58.461 55.000 0.00 0.00 0.00 3.68
1932 2127 1.074566 CCCCTTTCAGTCTCCTTTGCT 59.925 52.381 0.00 0.00 0.00 3.91
1933 2128 2.489802 CCCCTTTCAGTCTCCTTTGCTT 60.490 50.000 0.00 0.00 0.00 3.91
1934 2129 3.244911 CCCCTTTCAGTCTCCTTTGCTTA 60.245 47.826 0.00 0.00 0.00 3.09
1935 2130 4.006319 CCCTTTCAGTCTCCTTTGCTTAG 58.994 47.826 0.00 0.00 0.00 2.18
1936 2131 4.505742 CCCTTTCAGTCTCCTTTGCTTAGT 60.506 45.833 0.00 0.00 0.00 2.24
1937 2132 5.280011 CCCTTTCAGTCTCCTTTGCTTAGTA 60.280 44.000 0.00 0.00 0.00 1.82
1938 2133 5.872070 CCTTTCAGTCTCCTTTGCTTAGTAG 59.128 44.000 0.00 0.00 0.00 2.57
1939 2134 6.420913 TTTCAGTCTCCTTTGCTTAGTAGT 57.579 37.500 0.00 0.00 0.00 2.73
1940 2135 6.420913 TTCAGTCTCCTTTGCTTAGTAGTT 57.579 37.500 0.00 0.00 0.00 2.24
1941 2136 5.784177 TCAGTCTCCTTTGCTTAGTAGTTG 58.216 41.667 0.00 0.00 0.00 3.16
1942 2137 5.304614 TCAGTCTCCTTTGCTTAGTAGTTGT 59.695 40.000 0.00 0.00 0.00 3.32
1943 2138 5.635700 CAGTCTCCTTTGCTTAGTAGTTGTC 59.364 44.000 0.00 0.00 0.00 3.18
1944 2139 4.930405 GTCTCCTTTGCTTAGTAGTTGTCC 59.070 45.833 0.00 0.00 0.00 4.02
1945 2140 4.838986 TCTCCTTTGCTTAGTAGTTGTCCT 59.161 41.667 0.00 0.00 0.00 3.85
1946 2141 6.014647 TCTCCTTTGCTTAGTAGTTGTCCTA 58.985 40.000 0.00 0.00 0.00 2.94
1947 2142 6.668283 TCTCCTTTGCTTAGTAGTTGTCCTAT 59.332 38.462 0.00 0.00 0.00 2.57
1948 2143 7.180408 TCTCCTTTGCTTAGTAGTTGTCCTATT 59.820 37.037 0.00 0.00 0.00 1.73
1949 2144 7.686434 TCCTTTGCTTAGTAGTTGTCCTATTT 58.314 34.615 0.00 0.00 0.00 1.40
1950 2145 7.606456 TCCTTTGCTTAGTAGTTGTCCTATTTG 59.394 37.037 0.00 0.00 0.00 2.32
1951 2146 7.148239 CCTTTGCTTAGTAGTTGTCCTATTTGG 60.148 40.741 0.00 0.00 37.10 3.28
1952 2147 5.183228 TGCTTAGTAGTTGTCCTATTTGGC 58.817 41.667 0.00 0.00 35.26 4.52
1953 2148 5.045869 TGCTTAGTAGTTGTCCTATTTGGCT 60.046 40.000 0.00 0.00 35.26 4.75
1954 2149 5.880887 GCTTAGTAGTTGTCCTATTTGGCTT 59.119 40.000 0.00 0.00 35.26 4.35
1955 2150 6.183360 GCTTAGTAGTTGTCCTATTTGGCTTG 60.183 42.308 0.00 0.00 35.26 4.01
1956 2151 5.499004 AGTAGTTGTCCTATTTGGCTTGA 57.501 39.130 0.00 0.00 35.26 3.02
1957 2152 6.067217 AGTAGTTGTCCTATTTGGCTTGAT 57.933 37.500 0.00 0.00 35.26 2.57
1958 2153 5.882557 AGTAGTTGTCCTATTTGGCTTGATG 59.117 40.000 0.00 0.00 35.26 3.07
1959 2154 3.445096 AGTTGTCCTATTTGGCTTGATGC 59.555 43.478 0.00 0.00 41.94 3.91
1969 2164 1.354506 GCTTGATGCCTAGCTTGCG 59.645 57.895 0.00 0.00 37.99 4.85
1970 2165 1.091771 GCTTGATGCCTAGCTTGCGA 61.092 55.000 0.00 0.00 37.99 5.10
1971 2166 1.590932 CTTGATGCCTAGCTTGCGAT 58.409 50.000 0.00 0.00 0.00 4.58
1972 2167 1.530293 CTTGATGCCTAGCTTGCGATC 59.470 52.381 0.00 2.87 0.00 3.69
1973 2168 0.755079 TGATGCCTAGCTTGCGATCT 59.245 50.000 0.00 0.00 0.00 2.75
1974 2169 1.139654 TGATGCCTAGCTTGCGATCTT 59.860 47.619 0.00 0.00 0.00 2.40
1975 2170 1.797635 GATGCCTAGCTTGCGATCTTC 59.202 52.381 0.00 0.00 0.00 2.87
1976 2171 0.528466 TGCCTAGCTTGCGATCTTCG 60.528 55.000 0.00 0.00 43.89 3.79
1977 2172 0.249073 GCCTAGCTTGCGATCTTCGA 60.249 55.000 0.00 0.00 43.74 3.71
1978 2173 1.802880 GCCTAGCTTGCGATCTTCGAA 60.803 52.381 0.00 0.00 43.74 3.71
1979 2174 1.855360 CCTAGCTTGCGATCTTCGAAC 59.145 52.381 0.00 0.00 43.74 3.95
1980 2175 1.514811 CTAGCTTGCGATCTTCGAACG 59.485 52.381 0.00 0.00 43.74 3.95
1981 2176 0.109272 AGCTTGCGATCTTCGAACGA 60.109 50.000 10.44 5.46 43.74 3.85
1982 2177 0.023858 GCTTGCGATCTTCGAACGAC 59.976 55.000 10.44 3.30 43.74 4.34
1983 2178 0.291989 CTTGCGATCTTCGAACGACG 59.708 55.000 10.44 9.20 43.74 5.12
1993 2188 1.730501 TCGAACGACGATACCTGACT 58.269 50.000 0.00 0.00 46.45 3.41
1994 2189 1.395954 TCGAACGACGATACCTGACTG 59.604 52.381 0.00 0.00 46.45 3.51
1995 2190 1.395954 CGAACGACGATACCTGACTGA 59.604 52.381 0.00 0.00 45.77 3.41
1996 2191 2.031807 CGAACGACGATACCTGACTGAT 59.968 50.000 0.00 0.00 45.77 2.90
1997 2192 3.364062 GAACGACGATACCTGACTGATG 58.636 50.000 0.00 0.00 0.00 3.07
1998 2193 2.366533 ACGACGATACCTGACTGATGT 58.633 47.619 0.00 0.00 0.00 3.06
1999 2194 3.538591 ACGACGATACCTGACTGATGTA 58.461 45.455 0.00 0.00 0.00 2.29
2000 2195 4.135306 ACGACGATACCTGACTGATGTAT 58.865 43.478 0.00 0.00 0.00 2.29
2001 2196 4.579340 ACGACGATACCTGACTGATGTATT 59.421 41.667 0.00 0.00 0.00 1.89
2002 2197 5.067413 ACGACGATACCTGACTGATGTATTT 59.933 40.000 0.00 0.00 0.00 1.40
2003 2198 5.625721 CGACGATACCTGACTGATGTATTTC 59.374 44.000 0.00 0.00 0.00 2.17
2004 2199 5.844004 ACGATACCTGACTGATGTATTTCC 58.156 41.667 0.00 0.00 0.00 3.13
2005 2200 4.917998 CGATACCTGACTGATGTATTTCCG 59.082 45.833 0.00 0.00 0.00 4.30
2006 2201 5.507482 CGATACCTGACTGATGTATTTCCGT 60.507 44.000 0.00 0.00 0.00 4.69
2007 2202 4.553330 ACCTGACTGATGTATTTCCGTT 57.447 40.909 0.00 0.00 0.00 4.44
2008 2203 4.253685 ACCTGACTGATGTATTTCCGTTG 58.746 43.478 0.00 0.00 0.00 4.10
2009 2204 4.020573 ACCTGACTGATGTATTTCCGTTGA 60.021 41.667 0.00 0.00 0.00 3.18
2010 2205 5.118990 CCTGACTGATGTATTTCCGTTGAT 58.881 41.667 0.00 0.00 0.00 2.57
2011 2206 5.586243 CCTGACTGATGTATTTCCGTTGATT 59.414 40.000 0.00 0.00 0.00 2.57
2012 2207 6.421377 TGACTGATGTATTTCCGTTGATTG 57.579 37.500 0.00 0.00 0.00 2.67
2013 2208 5.163764 TGACTGATGTATTTCCGTTGATTGC 60.164 40.000 0.00 0.00 0.00 3.56
2014 2209 4.699735 ACTGATGTATTTCCGTTGATTGCA 59.300 37.500 0.00 0.00 0.00 4.08
2015 2210 5.182950 ACTGATGTATTTCCGTTGATTGCAA 59.817 36.000 0.00 0.00 0.00 4.08
2016 2211 6.018589 TGATGTATTTCCGTTGATTGCAAA 57.981 33.333 1.71 0.00 35.42 3.68
2017 2212 6.450545 TGATGTATTTCCGTTGATTGCAAAA 58.549 32.000 1.71 0.00 35.42 2.44
2018 2213 7.095910 TGATGTATTTCCGTTGATTGCAAAAT 58.904 30.769 1.71 0.00 35.42 1.82
2019 2214 7.601886 TGATGTATTTCCGTTGATTGCAAAATT 59.398 29.630 1.71 0.00 35.42 1.82
2020 2215 8.994429 ATGTATTTCCGTTGATTGCAAAATTA 57.006 26.923 1.71 0.00 35.42 1.40
2021 2216 8.818141 TGTATTTCCGTTGATTGCAAAATTAA 57.182 26.923 1.71 0.00 35.42 1.40
2022 2217 9.429359 TGTATTTCCGTTGATTGCAAAATTAAT 57.571 25.926 1.71 0.00 35.42 1.40
2023 2218 9.687717 GTATTTCCGTTGATTGCAAAATTAATG 57.312 29.630 1.71 2.20 35.42 1.90
2024 2219 6.718454 TTCCGTTGATTGCAAAATTAATGG 57.282 33.333 1.71 11.07 36.62 3.16
2025 2220 6.030548 TCCGTTGATTGCAAAATTAATGGA 57.969 33.333 17.86 17.86 39.82 3.41
2026 2221 6.459066 TCCGTTGATTGCAAAATTAATGGAA 58.541 32.000 18.78 1.52 39.43 3.53
2027 2222 6.931281 TCCGTTGATTGCAAAATTAATGGAAA 59.069 30.769 18.78 5.81 39.43 3.13
2028 2223 7.117523 TCCGTTGATTGCAAAATTAATGGAAAG 59.882 33.333 18.78 3.09 39.43 2.62
2029 2224 7.235777 CGTTGATTGCAAAATTAATGGAAAGG 58.764 34.615 1.71 0.00 35.42 3.11
2030 2225 7.529158 GTTGATTGCAAAATTAATGGAAAGGG 58.471 34.615 1.71 0.00 35.42 3.95
2031 2226 6.179040 TGATTGCAAAATTAATGGAAAGGGG 58.821 36.000 1.71 0.00 31.75 4.79
2032 2227 5.574970 TTGCAAAATTAATGGAAAGGGGT 57.425 34.783 0.00 0.00 0.00 4.95
2033 2228 4.904241 TGCAAAATTAATGGAAAGGGGTG 58.096 39.130 0.00 0.00 0.00 4.61
2034 2229 4.349342 TGCAAAATTAATGGAAAGGGGTGT 59.651 37.500 0.00 0.00 0.00 4.16
2035 2230 4.694982 GCAAAATTAATGGAAAGGGGTGTG 59.305 41.667 0.00 0.00 0.00 3.82
2036 2231 5.512232 GCAAAATTAATGGAAAGGGGTGTGA 60.512 40.000 0.00 0.00 0.00 3.58
2037 2232 6.165577 CAAAATTAATGGAAAGGGGTGTGAG 58.834 40.000 0.00 0.00 0.00 3.51
2038 2233 2.507407 TAATGGAAAGGGGTGTGAGC 57.493 50.000 0.00 0.00 0.00 4.26
2039 2234 0.251787 AATGGAAAGGGGTGTGAGCC 60.252 55.000 0.00 0.00 34.31 4.70
2047 2242 3.948719 GGTGTGAGCCCGGTTGGA 61.949 66.667 0.00 0.00 37.49 3.53
2048 2243 2.112297 GTGTGAGCCCGGTTGGAA 59.888 61.111 0.00 0.00 37.49 3.53
2049 2244 1.527380 GTGTGAGCCCGGTTGGAAA 60.527 57.895 0.00 0.00 37.49 3.13
2050 2245 1.104577 GTGTGAGCCCGGTTGGAAAA 61.105 55.000 0.00 0.00 37.49 2.29
2051 2246 0.395862 TGTGAGCCCGGTTGGAAAAA 60.396 50.000 0.00 0.00 37.49 1.94
2100 2297 1.156095 TCTGTCAGTGGAGCCTCCA 59.844 57.895 10.05 10.05 45.98 3.86
2176 2373 0.315869 CGTGTGCGTTGGAACTTCAC 60.316 55.000 0.00 0.00 33.57 3.18
2178 2375 1.003866 GTGTGCGTTGGAACTTCACTC 60.004 52.381 10.85 6.04 33.87 3.51
2181 2378 1.138069 TGCGTTGGAACTTCACTCTCA 59.862 47.619 0.00 0.00 0.00 3.27
2184 2381 3.312828 CGTTGGAACTTCACTCTCAGAG 58.687 50.000 0.00 0.00 35.52 3.35
2185 2382 3.063485 GTTGGAACTTCACTCTCAGAGC 58.937 50.000 0.00 0.00 32.04 4.09
2186 2383 1.620819 TGGAACTTCACTCTCAGAGCC 59.379 52.381 0.00 0.00 32.04 4.70
2187 2384 1.899142 GGAACTTCACTCTCAGAGCCT 59.101 52.381 0.00 0.00 32.04 4.58
2188 2385 2.094234 GGAACTTCACTCTCAGAGCCTC 60.094 54.545 0.00 0.00 32.04 4.70
2219 2429 6.987992 AGAGACGGATACTTGTGTTGTTTTAA 59.012 34.615 0.00 0.00 0.00 1.52
2231 2441 4.565166 GTGTTGTTTTAACACCTTTCAGCC 59.435 41.667 10.88 0.00 43.39 4.85
2233 2443 4.647424 TGTTTTAACACCTTTCAGCCTG 57.353 40.909 0.00 0.00 33.17 4.85
2262 2477 1.009829 GTTACTCAAGCTGCCGGATG 58.990 55.000 5.05 0.00 0.00 3.51
2315 2531 1.153429 AACTATTGCCGACTCGCCC 60.153 57.895 0.00 0.00 0.00 6.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 3.287867 AGGATAGTGTTCCTTGCATGG 57.712 47.619 12.41 12.41 43.88 3.66
22 23 3.307242 GTGTTCGCTTACTATGCTCAAGG 59.693 47.826 0.00 0.00 0.00 3.61
27 28 3.594603 AGTGTGTTCGCTTACTATGCT 57.405 42.857 0.00 0.00 0.00 3.79
28 29 5.041287 TGATAGTGTGTTCGCTTACTATGC 58.959 41.667 0.00 0.00 36.70 3.14
38 39 9.946165 TTATACTGTTATCTGATAGTGTGTTCG 57.054 33.333 2.55 0.00 0.00 3.95
72 73 3.631227 GTGGTGCGAGTAGTAGTCCTTAT 59.369 47.826 0.00 0.00 0.00 1.73
73 74 3.012518 GTGGTGCGAGTAGTAGTCCTTA 58.987 50.000 0.00 0.00 0.00 2.69
74 75 1.817447 GTGGTGCGAGTAGTAGTCCTT 59.183 52.381 0.00 0.00 0.00 3.36
75 76 1.461559 GTGGTGCGAGTAGTAGTCCT 58.538 55.000 0.00 0.00 0.00 3.85
76 77 0.098376 CGTGGTGCGAGTAGTAGTCC 59.902 60.000 0.00 0.00 44.77 3.85
77 78 0.522915 GCGTGGTGCGAGTAGTAGTC 60.523 60.000 0.00 0.00 44.77 2.59
211 258 1.545428 GGTGGTTGCCTTGATCTGTCA 60.545 52.381 0.00 0.00 0.00 3.58
222 269 0.394352 CCTAGGATGTGGTGGTTGCC 60.394 60.000 1.05 0.00 0.00 4.52
242 289 2.997986 GCTTCGTTCCCATTAGTTTCGA 59.002 45.455 0.00 0.00 0.00 3.71
243 290 2.739913 TGCTTCGTTCCCATTAGTTTCG 59.260 45.455 0.00 0.00 0.00 3.46
261 308 3.686726 CCGCTTCTCTGAATTTTACTGCT 59.313 43.478 0.00 0.00 0.00 4.24
270 317 2.300152 TGTTCTGACCGCTTCTCTGAAT 59.700 45.455 0.00 0.00 30.93 2.57
292 339 3.272042 CCACCCCCATTGACCCCA 61.272 66.667 0.00 0.00 0.00 4.96
304 351 1.069775 TCAGAAAACCCTACCCACCC 58.930 55.000 0.00 0.00 0.00 4.61
306 353 2.195741 GGTCAGAAAACCCTACCCAC 57.804 55.000 0.00 0.00 32.82 4.61
322 369 0.320697 AACTCAACGGCTACAGGGTC 59.679 55.000 0.00 0.00 0.00 4.46
905 958 0.676782 AGAAAGGGGCGTTCATTCGG 60.677 55.000 0.00 0.00 0.00 4.30
906 959 0.447801 CAGAAAGGGGCGTTCATTCG 59.552 55.000 0.00 0.00 0.00 3.34
985 1038 4.887071 GCCCACCATATTTCAACATAGTGA 59.113 41.667 0.00 0.00 0.00 3.41
986 1039 4.889409 AGCCCACCATATTTCAACATAGTG 59.111 41.667 0.00 0.00 0.00 2.74
987 1040 4.889409 CAGCCCACCATATTTCAACATAGT 59.111 41.667 0.00 0.00 0.00 2.12
988 1041 4.279169 CCAGCCCACCATATTTCAACATAG 59.721 45.833 0.00 0.00 0.00 2.23
989 1042 4.214310 CCAGCCCACCATATTTCAACATA 58.786 43.478 0.00 0.00 0.00 2.29
990 1043 3.033184 CCAGCCCACCATATTTCAACAT 58.967 45.455 0.00 0.00 0.00 2.71
991 1044 2.455557 CCAGCCCACCATATTTCAACA 58.544 47.619 0.00 0.00 0.00 3.33
992 1045 1.136891 GCCAGCCCACCATATTTCAAC 59.863 52.381 0.00 0.00 0.00 3.18
994 1047 0.630673 AGCCAGCCCACCATATTTCA 59.369 50.000 0.00 0.00 0.00 2.69
995 1048 1.035139 CAGCCAGCCCACCATATTTC 58.965 55.000 0.00 0.00 0.00 2.17
996 1049 0.397535 CCAGCCAGCCCACCATATTT 60.398 55.000 0.00 0.00 0.00 1.40
1036 1089 3.586892 CTCGAGACCTTGGACCTAAAAC 58.413 50.000 6.58 0.00 0.00 2.43
1257 1347 2.762043 TCGCCATCGGGATCCACA 60.762 61.111 15.23 0.00 35.59 4.17
1262 1352 3.933722 CAGCCTCGCCATCGGGAT 61.934 66.667 0.00 0.00 38.83 3.85
1307 1397 4.760047 TCCTCTTCTTGCGCCGCC 62.760 66.667 6.63 0.00 0.00 6.13
1395 1490 4.688511 AGAACAACAGACTAGTCGCTAG 57.311 45.455 17.07 11.22 39.72 3.42
1398 1493 3.639538 TCAAGAACAACAGACTAGTCGC 58.360 45.455 17.07 0.00 34.09 5.19
1402 1497 4.993584 ACAGCATCAAGAACAACAGACTAG 59.006 41.667 0.00 0.00 0.00 2.57
1476 1574 3.067180 GTCCCAAATGATGCATCGTGAAT 59.933 43.478 21.88 6.80 0.00 2.57
1510 1623 3.737774 CAGCAGGATACATACATCACACG 59.262 47.826 0.00 0.00 41.41 4.49
1538 1651 9.929722 GTCGATTGCACTGAAATAAAATGTATA 57.070 29.630 0.00 0.00 0.00 1.47
1539 1652 8.677300 AGTCGATTGCACTGAAATAAAATGTAT 58.323 29.630 0.00 0.00 0.00 2.29
1563 1718 2.684881 CTGTGGCAGTGAAAGTTTCAGT 59.315 45.455 18.56 18.46 43.88 3.41
1583 1739 2.353958 CACCAGGTGCATGGCTCT 59.646 61.111 6.67 0.00 44.80 4.09
1584 1740 2.753043 CCACCAGGTGCATGGCTC 60.753 66.667 14.98 0.00 44.80 4.70
1585 1741 2.370459 TTTCCACCAGGTGCATGGCT 62.370 55.000 14.98 0.00 44.80 4.75
1586 1742 1.470996 TTTTCCACCAGGTGCATGGC 61.471 55.000 14.98 0.00 44.80 4.40
1587 1743 0.604578 CTTTTCCACCAGGTGCATGG 59.395 55.000 14.98 4.73 46.47 3.66
1588 1744 1.270550 GTCTTTTCCACCAGGTGCATG 59.729 52.381 14.98 0.60 35.89 4.06
1598 1785 2.156343 AGCTCAGACGTCTTTTCCAC 57.844 50.000 17.26 2.52 0.00 4.02
1599 1786 2.158957 ACAAGCTCAGACGTCTTTTCCA 60.159 45.455 17.26 0.00 0.00 3.53
1644 1833 5.010012 AGTTCAAGGACAACAATGGATTGAC 59.990 40.000 6.37 0.00 40.14 3.18
1646 1835 5.221303 ACAGTTCAAGGACAACAATGGATTG 60.221 40.000 0.00 0.00 43.26 2.67
1652 1841 6.530019 AAAGAACAGTTCAAGGACAACAAT 57.470 33.333 15.85 0.00 0.00 2.71
1653 1842 5.975693 AAAGAACAGTTCAAGGACAACAA 57.024 34.783 15.85 0.00 0.00 2.83
1693 1886 9.185192 CTGAAAAGCTAAACATCCAACTAAAAG 57.815 33.333 0.00 0.00 0.00 2.27
1751 1946 5.449314 CGGACAGAACCAACAACAACAATAA 60.449 40.000 0.00 0.00 0.00 1.40
1754 1949 2.162608 CGGACAGAACCAACAACAACAA 59.837 45.455 0.00 0.00 0.00 2.83
1755 1950 1.740585 CGGACAGAACCAACAACAACA 59.259 47.619 0.00 0.00 0.00 3.33
1756 1951 1.533129 GCGGACAGAACCAACAACAAC 60.533 52.381 0.00 0.00 0.00 3.32
1757 1952 0.736053 GCGGACAGAACCAACAACAA 59.264 50.000 0.00 0.00 0.00 2.83
1758 1953 0.107410 AGCGGACAGAACCAACAACA 60.107 50.000 0.00 0.00 0.00 3.33
1759 1954 0.307760 CAGCGGACAGAACCAACAAC 59.692 55.000 0.00 0.00 0.00 3.32
1760 1955 0.817634 CCAGCGGACAGAACCAACAA 60.818 55.000 0.00 0.00 0.00 2.83
1761 1956 1.227823 CCAGCGGACAGAACCAACA 60.228 57.895 0.00 0.00 0.00 3.33
1762 1957 0.951040 CTCCAGCGGACAGAACCAAC 60.951 60.000 0.00 0.00 0.00 3.77
1763 1958 1.371183 CTCCAGCGGACAGAACCAA 59.629 57.895 0.00 0.00 0.00 3.67
1764 1959 1.407656 AACTCCAGCGGACAGAACCA 61.408 55.000 0.00 0.00 0.00 3.67
1765 1960 0.250338 AAACTCCAGCGGACAGAACC 60.250 55.000 0.00 0.00 0.00 3.62
1766 1961 1.594331 AAAACTCCAGCGGACAGAAC 58.406 50.000 0.00 0.00 0.00 3.01
1767 1962 3.596214 GATAAAACTCCAGCGGACAGAA 58.404 45.455 0.00 0.00 0.00 3.02
1768 1963 2.093658 GGATAAAACTCCAGCGGACAGA 60.094 50.000 0.00 0.00 35.24 3.41
1769 1964 2.093447 AGGATAAAACTCCAGCGGACAG 60.093 50.000 0.00 0.00 37.81 3.51
1770 1965 1.906574 AGGATAAAACTCCAGCGGACA 59.093 47.619 0.00 0.00 37.81 4.02
1771 1966 2.168728 AGAGGATAAAACTCCAGCGGAC 59.831 50.000 0.00 0.00 37.81 4.79
1772 1967 2.467880 AGAGGATAAAACTCCAGCGGA 58.532 47.619 0.00 0.00 37.81 5.54
1773 1968 2.990066 AGAGGATAAAACTCCAGCGG 57.010 50.000 0.00 0.00 37.81 5.52
1774 1969 4.098044 TGTCTAGAGGATAAAACTCCAGCG 59.902 45.833 0.00 0.00 37.81 5.18
1775 1970 5.128008 ACTGTCTAGAGGATAAAACTCCAGC 59.872 44.000 0.00 0.00 37.81 4.85
1776 1971 6.783708 ACTGTCTAGAGGATAAAACTCCAG 57.216 41.667 0.00 0.00 37.81 3.86
1777 1972 7.554959 AAACTGTCTAGAGGATAAAACTCCA 57.445 36.000 0.00 0.00 37.81 3.86
1778 1973 6.752815 CGAAACTGTCTAGAGGATAAAACTCC 59.247 42.308 0.00 0.00 35.58 3.85
1779 1974 7.314393 ACGAAACTGTCTAGAGGATAAAACTC 58.686 38.462 0.00 0.00 35.20 3.01
1780 1975 7.229581 ACGAAACTGTCTAGAGGATAAAACT 57.770 36.000 0.00 0.00 0.00 2.66
1781 1976 7.509050 GACGAAACTGTCTAGAGGATAAAAC 57.491 40.000 0.00 0.00 35.95 2.43
1796 1991 1.255342 CACACGACACAGACGAAACTG 59.745 52.381 0.00 0.00 42.78 3.16
1797 1992 1.556564 CACACGACACAGACGAAACT 58.443 50.000 0.00 0.00 34.70 2.66
1798 1993 0.575390 CCACACGACACAGACGAAAC 59.425 55.000 0.00 0.00 34.70 2.78
1799 1994 0.173935 ACCACACGACACAGACGAAA 59.826 50.000 0.00 0.00 34.70 3.46
1800 1995 0.526739 CACCACACGACACAGACGAA 60.527 55.000 0.00 0.00 34.70 3.85
1801 1996 1.065109 CACCACACGACACAGACGA 59.935 57.895 0.00 0.00 34.70 4.20
1802 1997 1.949133 CCACCACACGACACAGACG 60.949 63.158 0.00 0.00 0.00 4.18
1803 1998 0.461339 AACCACCACACGACACAGAC 60.461 55.000 0.00 0.00 0.00 3.51
1804 1999 0.461163 CAACCACCACACGACACAGA 60.461 55.000 0.00 0.00 0.00 3.41
1805 2000 0.742990 ACAACCACCACACGACACAG 60.743 55.000 0.00 0.00 0.00 3.66
1806 2001 0.535797 TACAACCACCACACGACACA 59.464 50.000 0.00 0.00 0.00 3.72
1807 2002 1.214367 CTACAACCACCACACGACAC 58.786 55.000 0.00 0.00 0.00 3.67
1808 2003 0.825410 ACTACAACCACCACACGACA 59.175 50.000 0.00 0.00 0.00 4.35
1809 2004 1.214367 CACTACAACCACCACACGAC 58.786 55.000 0.00 0.00 0.00 4.34
1810 2005 0.825410 ACACTACAACCACCACACGA 59.175 50.000 0.00 0.00 0.00 4.35
1811 2006 1.214367 GACACTACAACCACCACACG 58.786 55.000 0.00 0.00 0.00 4.49
1812 2007 1.214367 CGACACTACAACCACCACAC 58.786 55.000 0.00 0.00 0.00 3.82
1813 2008 0.825410 ACGACACTACAACCACCACA 59.175 50.000 0.00 0.00 0.00 4.17
1814 2009 1.202440 TGACGACACTACAACCACCAC 60.202 52.381 0.00 0.00 0.00 4.16
1815 2010 1.067974 CTGACGACACTACAACCACCA 59.932 52.381 0.00 0.00 0.00 4.17
1816 2011 1.604693 CCTGACGACACTACAACCACC 60.605 57.143 0.00 0.00 0.00 4.61
1817 2012 1.068127 ACCTGACGACACTACAACCAC 59.932 52.381 0.00 0.00 0.00 4.16
1818 2013 1.405872 ACCTGACGACACTACAACCA 58.594 50.000 0.00 0.00 0.00 3.67
1819 2014 2.521105 AACCTGACGACACTACAACC 57.479 50.000 0.00 0.00 0.00 3.77
1820 2015 3.060740 CGAAAACCTGACGACACTACAAC 60.061 47.826 0.00 0.00 0.00 3.32
1821 2016 3.117794 CGAAAACCTGACGACACTACAA 58.882 45.455 0.00 0.00 0.00 2.41
1822 2017 2.734670 CGAAAACCTGACGACACTACA 58.265 47.619 0.00 0.00 0.00 2.74
1823 2018 1.454653 GCGAAAACCTGACGACACTAC 59.545 52.381 0.00 0.00 0.00 2.73
1824 2019 1.603678 GGCGAAAACCTGACGACACTA 60.604 52.381 0.00 0.00 35.00 2.74
1825 2020 0.878961 GGCGAAAACCTGACGACACT 60.879 55.000 0.00 0.00 35.00 3.55
1826 2021 1.568025 GGCGAAAACCTGACGACAC 59.432 57.895 0.00 0.00 35.00 3.67
1827 2022 1.595929 GGGCGAAAACCTGACGACA 60.596 57.895 0.00 0.00 36.73 4.35
1828 2023 2.322830 GGGGCGAAAACCTGACGAC 61.323 63.158 0.00 0.00 0.00 4.34
1829 2024 2.031465 GGGGCGAAAACCTGACGA 59.969 61.111 0.00 0.00 0.00 4.20
1830 2025 2.281208 TGGGGCGAAAACCTGACG 60.281 61.111 0.00 0.00 0.00 4.35
1831 2026 1.515521 CTGTGGGGCGAAAACCTGAC 61.516 60.000 0.00 0.00 0.00 3.51
1832 2027 1.228124 CTGTGGGGCGAAAACCTGA 60.228 57.895 0.00 0.00 0.00 3.86
1833 2028 2.919494 GCTGTGGGGCGAAAACCTG 61.919 63.158 0.00 0.00 0.00 4.00
1834 2029 2.597510 GCTGTGGGGCGAAAACCT 60.598 61.111 0.00 0.00 0.00 3.50
1835 2030 2.597510 AGCTGTGGGGCGAAAACC 60.598 61.111 0.00 0.00 37.29 3.27
1836 2031 1.244019 ATCAGCTGTGGGGCGAAAAC 61.244 55.000 14.67 0.00 37.29 2.43
1837 2032 0.326595 TATCAGCTGTGGGGCGAAAA 59.673 50.000 14.67 0.00 37.29 2.29
1838 2033 0.107703 CTATCAGCTGTGGGGCGAAA 60.108 55.000 14.67 0.00 37.29 3.46
1839 2034 1.264749 ACTATCAGCTGTGGGGCGAA 61.265 55.000 14.67 0.00 37.29 4.70
1840 2035 1.676678 GACTATCAGCTGTGGGGCGA 61.677 60.000 14.67 0.00 37.29 5.54
1841 2036 1.227380 GACTATCAGCTGTGGGGCG 60.227 63.158 14.67 0.47 37.29 6.13
1842 2037 1.147153 GGACTATCAGCTGTGGGGC 59.853 63.158 14.67 6.73 0.00 5.80
1843 2038 1.330655 ACGGACTATCAGCTGTGGGG 61.331 60.000 14.67 5.49 0.00 4.96
1844 2039 0.537188 AACGGACTATCAGCTGTGGG 59.463 55.000 14.67 7.27 0.00 4.61
1845 2040 2.271800 GAAACGGACTATCAGCTGTGG 58.728 52.381 14.67 5.89 0.00 4.17
1846 2041 2.926200 CTGAAACGGACTATCAGCTGTG 59.074 50.000 14.67 8.01 34.72 3.66
1847 2042 2.093973 CCTGAAACGGACTATCAGCTGT 60.094 50.000 14.67 3.75 39.36 4.40
1848 2043 2.544685 CCTGAAACGGACTATCAGCTG 58.455 52.381 7.63 7.63 39.36 4.24
1849 2044 1.482593 CCCTGAAACGGACTATCAGCT 59.517 52.381 0.00 0.00 39.36 4.24
1850 2045 1.207329 ACCCTGAAACGGACTATCAGC 59.793 52.381 0.00 0.00 39.36 4.26
1851 2046 3.262420 CAACCCTGAAACGGACTATCAG 58.738 50.000 0.00 0.00 40.17 2.90
1852 2047 2.635915 ACAACCCTGAAACGGACTATCA 59.364 45.455 0.00 0.00 0.00 2.15
1853 2048 3.259902 GACAACCCTGAAACGGACTATC 58.740 50.000 0.00 0.00 0.00 2.08
1854 2049 2.635915 TGACAACCCTGAAACGGACTAT 59.364 45.455 0.00 0.00 0.00 2.12
1855 2050 2.040939 TGACAACCCTGAAACGGACTA 58.959 47.619 0.00 0.00 0.00 2.59
1856 2051 0.834612 TGACAACCCTGAAACGGACT 59.165 50.000 0.00 0.00 0.00 3.85
1857 2052 1.535462 CATGACAACCCTGAAACGGAC 59.465 52.381 0.00 0.00 0.00 4.79
1858 2053 1.890876 CATGACAACCCTGAAACGGA 58.109 50.000 0.00 0.00 0.00 4.69
1859 2054 0.240945 GCATGACAACCCTGAAACGG 59.759 55.000 0.00 0.00 0.00 4.44
1860 2055 0.950836 TGCATGACAACCCTGAAACG 59.049 50.000 0.00 0.00 0.00 3.60
1861 2056 1.956477 ACTGCATGACAACCCTGAAAC 59.044 47.619 0.00 0.00 0.00 2.78
1862 2057 1.955778 CACTGCATGACAACCCTGAAA 59.044 47.619 0.00 0.00 0.00 2.69
1863 2058 1.608055 CACTGCATGACAACCCTGAA 58.392 50.000 0.00 0.00 0.00 3.02
1864 2059 0.250858 CCACTGCATGACAACCCTGA 60.251 55.000 0.00 0.00 0.00 3.86
1865 2060 1.246056 CCCACTGCATGACAACCCTG 61.246 60.000 0.00 0.00 0.00 4.45
1866 2061 1.075482 CCCACTGCATGACAACCCT 59.925 57.895 0.00 0.00 0.00 4.34
1867 2062 0.827507 AACCCACTGCATGACAACCC 60.828 55.000 0.00 0.00 0.00 4.11
1868 2063 1.000274 GAAACCCACTGCATGACAACC 60.000 52.381 0.00 0.00 0.00 3.77
1869 2064 1.000274 GGAAACCCACTGCATGACAAC 60.000 52.381 0.00 0.00 0.00 3.32
1870 2065 1.133513 AGGAAACCCACTGCATGACAA 60.134 47.619 0.00 0.00 0.00 3.18
1871 2066 0.478072 AGGAAACCCACTGCATGACA 59.522 50.000 0.00 0.00 0.00 3.58
1872 2067 0.883833 CAGGAAACCCACTGCATGAC 59.116 55.000 0.00 0.00 0.00 3.06
1873 2068 0.251297 CCAGGAAACCCACTGCATGA 60.251 55.000 0.00 0.00 33.43 3.07
1874 2069 1.880819 GCCAGGAAACCCACTGCATG 61.881 60.000 0.00 0.00 33.43 4.06
1875 2070 1.607467 GCCAGGAAACCCACTGCAT 60.607 57.895 0.00 0.00 33.43 3.96
1876 2071 2.203480 GCCAGGAAACCCACTGCA 60.203 61.111 0.00 0.00 33.43 4.41
1877 2072 3.365265 CGCCAGGAAACCCACTGC 61.365 66.667 0.00 0.00 33.43 4.40
1878 2073 1.002134 ATCGCCAGGAAACCCACTG 60.002 57.895 0.00 0.00 34.54 3.66
1879 2074 1.002134 CATCGCCAGGAAACCCACT 60.002 57.895 0.00 0.00 0.00 4.00
1880 2075 2.700773 GCATCGCCAGGAAACCCAC 61.701 63.158 0.00 0.00 0.00 4.61
1881 2076 2.361104 GCATCGCCAGGAAACCCA 60.361 61.111 0.00 0.00 0.00 4.51
1882 2077 2.361104 TGCATCGCCAGGAAACCC 60.361 61.111 0.00 0.00 0.00 4.11
1883 2078 2.700773 GGTGCATCGCCAGGAAACC 61.701 63.158 0.00 0.00 33.65 3.27
1884 2079 1.523154 TTGGTGCATCGCCAGGAAAC 61.523 55.000 0.00 0.00 45.18 2.78
1885 2080 1.228398 TTGGTGCATCGCCAGGAAA 60.228 52.632 0.00 0.00 45.18 3.13
1886 2081 1.971167 GTTGGTGCATCGCCAGGAA 60.971 57.895 0.00 0.00 45.18 3.36
1887 2082 2.359850 GTTGGTGCATCGCCAGGA 60.360 61.111 0.00 0.00 45.18 3.86
1888 2083 3.443045 GGTTGGTGCATCGCCAGG 61.443 66.667 5.61 0.00 45.18 4.45
1889 2084 3.443045 GGGTTGGTGCATCGCCAG 61.443 66.667 11.74 0.00 45.18 4.85
1893 2088 2.125310 TAGCGGGTTGGTGCATCG 60.125 61.111 0.00 0.00 0.00 3.84
1894 2089 2.112815 GGTAGCGGGTTGGTGCATC 61.113 63.158 0.00 0.00 31.70 3.91
1895 2090 2.045340 GGTAGCGGGTTGGTGCAT 60.045 61.111 0.00 0.00 31.70 3.96
1896 2091 4.338710 GGGTAGCGGGTTGGTGCA 62.339 66.667 0.00 0.00 31.70 4.57
1898 2093 4.419921 GGGGGTAGCGGGTTGGTG 62.420 72.222 0.00 0.00 0.00 4.17
1899 2094 4.669773 AGGGGGTAGCGGGTTGGT 62.670 66.667 0.00 0.00 0.00 3.67
1900 2095 2.831894 GAAAGGGGGTAGCGGGTTGG 62.832 65.000 0.00 0.00 0.00 3.77
1901 2096 1.378119 GAAAGGGGGTAGCGGGTTG 60.378 63.158 0.00 0.00 0.00 3.77
1902 2097 1.848886 CTGAAAGGGGGTAGCGGGTT 61.849 60.000 0.00 0.00 0.00 4.11
1903 2098 2.204029 TGAAAGGGGGTAGCGGGT 60.204 61.111 0.00 0.00 0.00 5.28
1904 2099 2.253403 GACTGAAAGGGGGTAGCGGG 62.253 65.000 0.00 0.00 39.30 6.13
1905 2100 1.221021 GACTGAAAGGGGGTAGCGG 59.779 63.158 0.00 0.00 39.30 5.52
1906 2101 0.175989 GAGACTGAAAGGGGGTAGCG 59.824 60.000 0.00 0.00 39.30 4.26
1907 2102 0.542333 GGAGACTGAAAGGGGGTAGC 59.458 60.000 0.00 0.00 39.30 3.58
1908 2103 2.255770 AGGAGACTGAAAGGGGGTAG 57.744 55.000 0.00 0.00 41.13 3.18
1909 2104 2.642807 CAAAGGAGACTGAAAGGGGGTA 59.357 50.000 0.00 0.00 42.68 3.69
1910 2105 1.425448 CAAAGGAGACTGAAAGGGGGT 59.575 52.381 0.00 0.00 42.68 4.95
1911 2106 1.888391 GCAAAGGAGACTGAAAGGGGG 60.888 57.143 0.00 0.00 42.68 5.40
1912 2107 1.074566 AGCAAAGGAGACTGAAAGGGG 59.925 52.381 0.00 0.00 42.68 4.79
1913 2108 2.575805 AGCAAAGGAGACTGAAAGGG 57.424 50.000 0.00 0.00 42.68 3.95
1914 2109 4.646572 ACTAAGCAAAGGAGACTGAAAGG 58.353 43.478 0.00 0.00 42.68 3.11
1915 2110 6.459923 ACTACTAAGCAAAGGAGACTGAAAG 58.540 40.000 4.66 0.00 42.68 2.62
1916 2111 6.420913 ACTACTAAGCAAAGGAGACTGAAA 57.579 37.500 4.66 0.00 42.68 2.69
1917 2112 6.183360 ACAACTACTAAGCAAAGGAGACTGAA 60.183 38.462 4.66 0.00 42.68 3.02
1918 2113 5.304614 ACAACTACTAAGCAAAGGAGACTGA 59.695 40.000 4.66 0.00 42.68 3.41
1919 2114 5.542779 ACAACTACTAAGCAAAGGAGACTG 58.457 41.667 4.66 4.37 42.68 3.51
1921 2116 4.930405 GGACAACTACTAAGCAAAGGAGAC 59.070 45.833 4.66 0.00 31.30 3.36
1922 2117 4.838986 AGGACAACTACTAAGCAAAGGAGA 59.161 41.667 4.66 0.00 31.30 3.71
1923 2118 5.153950 AGGACAACTACTAAGCAAAGGAG 57.846 43.478 0.00 0.00 33.24 3.69
1924 2119 6.869206 ATAGGACAACTACTAAGCAAAGGA 57.131 37.500 0.00 0.00 33.70 3.36
1925 2120 7.148239 CCAAATAGGACAACTACTAAGCAAAGG 60.148 40.741 0.00 0.00 41.22 3.11
1926 2121 7.626452 GCCAAATAGGACAACTACTAAGCAAAG 60.626 40.741 0.00 0.00 41.22 2.77
1927 2122 6.150474 GCCAAATAGGACAACTACTAAGCAAA 59.850 38.462 0.00 0.00 41.22 3.68
1928 2123 5.646360 GCCAAATAGGACAACTACTAAGCAA 59.354 40.000 0.00 0.00 41.22 3.91
1929 2124 5.045869 AGCCAAATAGGACAACTACTAAGCA 60.046 40.000 0.00 0.00 41.22 3.91
1930 2125 5.429130 AGCCAAATAGGACAACTACTAAGC 58.571 41.667 0.00 0.00 41.22 3.09
1931 2126 7.103641 TCAAGCCAAATAGGACAACTACTAAG 58.896 38.462 0.00 0.00 41.22 2.18
1932 2127 7.011499 TCAAGCCAAATAGGACAACTACTAA 57.989 36.000 0.00 0.00 41.22 2.24
1933 2128 6.614694 TCAAGCCAAATAGGACAACTACTA 57.385 37.500 0.00 0.00 41.22 1.82
1934 2129 5.499004 TCAAGCCAAATAGGACAACTACT 57.501 39.130 0.00 0.00 41.22 2.57
1935 2130 5.449177 GCATCAAGCCAAATAGGACAACTAC 60.449 44.000 0.00 0.00 41.22 2.73
1936 2131 4.640201 GCATCAAGCCAAATAGGACAACTA 59.360 41.667 0.00 0.00 41.22 2.24
1937 2132 3.445096 GCATCAAGCCAAATAGGACAACT 59.555 43.478 0.00 0.00 41.22 3.16
1938 2133 3.774066 GCATCAAGCCAAATAGGACAAC 58.226 45.455 0.00 0.00 41.22 3.32
1951 2146 1.091771 TCGCAAGCTAGGCATCAAGC 61.092 55.000 10.50 0.00 39.08 4.01
1952 2147 1.530293 GATCGCAAGCTAGGCATCAAG 59.470 52.381 10.50 0.00 37.18 3.02
1953 2148 1.139654 AGATCGCAAGCTAGGCATCAA 59.860 47.619 10.50 0.00 37.18 2.57
1954 2149 0.755079 AGATCGCAAGCTAGGCATCA 59.245 50.000 10.50 0.00 37.18 3.07
1955 2150 1.797635 GAAGATCGCAAGCTAGGCATC 59.202 52.381 10.50 11.02 37.18 3.91
1956 2151 1.871408 CGAAGATCGCAAGCTAGGCAT 60.871 52.381 10.50 3.75 31.14 4.40
1957 2152 0.528466 CGAAGATCGCAAGCTAGGCA 60.528 55.000 10.50 0.00 31.14 4.75
1958 2153 0.249073 TCGAAGATCGCAAGCTAGGC 60.249 55.000 0.32 0.32 40.21 3.93
1959 2154 1.855360 GTTCGAAGATCGCAAGCTAGG 59.145 52.381 0.00 0.00 40.21 3.02
1960 2155 1.514811 CGTTCGAAGATCGCAAGCTAG 59.485 52.381 0.00 0.00 42.79 3.42
1961 2156 1.545759 CGTTCGAAGATCGCAAGCTA 58.454 50.000 0.00 0.00 42.79 3.32
1962 2157 2.363807 CGTTCGAAGATCGCAAGCT 58.636 52.632 0.00 0.00 42.79 3.74
1963 2158 4.934144 CGTTCGAAGATCGCAAGC 57.066 55.556 0.00 0.00 42.79 4.01
1975 2170 1.395954 TCAGTCAGGTATCGTCGTTCG 59.604 52.381 0.00 0.00 41.41 3.95
1976 2171 3.181499 ACATCAGTCAGGTATCGTCGTTC 60.181 47.826 0.00 0.00 0.00 3.95
1977 2172 2.753452 ACATCAGTCAGGTATCGTCGTT 59.247 45.455 0.00 0.00 0.00 3.85
1978 2173 2.366533 ACATCAGTCAGGTATCGTCGT 58.633 47.619 0.00 0.00 0.00 4.34
1979 2174 4.750952 ATACATCAGTCAGGTATCGTCG 57.249 45.455 0.00 0.00 0.00 5.12
1980 2175 5.921408 GGAAATACATCAGTCAGGTATCGTC 59.079 44.000 0.00 0.00 0.00 4.20
1981 2176 5.507482 CGGAAATACATCAGTCAGGTATCGT 60.507 44.000 0.00 0.00 0.00 3.73
1982 2177 4.917998 CGGAAATACATCAGTCAGGTATCG 59.082 45.833 0.00 0.00 0.00 2.92
1983 2178 5.844004 ACGGAAATACATCAGTCAGGTATC 58.156 41.667 0.00 0.00 0.00 2.24
1984 2179 5.871396 ACGGAAATACATCAGTCAGGTAT 57.129 39.130 0.00 0.00 0.00 2.73
1985 2180 5.186215 TCAACGGAAATACATCAGTCAGGTA 59.814 40.000 0.00 0.00 0.00 3.08
1986 2181 4.020573 TCAACGGAAATACATCAGTCAGGT 60.021 41.667 0.00 0.00 0.00 4.00
1987 2182 4.503910 TCAACGGAAATACATCAGTCAGG 58.496 43.478 0.00 0.00 0.00 3.86
1988 2183 6.481134 CAATCAACGGAAATACATCAGTCAG 58.519 40.000 0.00 0.00 0.00 3.51
1989 2184 5.163764 GCAATCAACGGAAATACATCAGTCA 60.164 40.000 0.00 0.00 0.00 3.41
1990 2185 5.163764 TGCAATCAACGGAAATACATCAGTC 60.164 40.000 0.00 0.00 0.00 3.51
1991 2186 4.699735 TGCAATCAACGGAAATACATCAGT 59.300 37.500 0.00 0.00 0.00 3.41
1992 2187 5.233957 TGCAATCAACGGAAATACATCAG 57.766 39.130 0.00 0.00 0.00 2.90
1993 2188 5.635417 TTGCAATCAACGGAAATACATCA 57.365 34.783 0.00 0.00 0.00 3.07
1994 2189 6.942886 TTTTGCAATCAACGGAAATACATC 57.057 33.333 0.00 0.00 30.75 3.06
1995 2190 7.903995 AATTTTGCAATCAACGGAAATACAT 57.096 28.000 0.00 0.00 30.75 2.29
1996 2191 8.818141 TTAATTTTGCAATCAACGGAAATACA 57.182 26.923 0.00 0.00 30.75 2.29
1997 2192 9.687717 CATTAATTTTGCAATCAACGGAAATAC 57.312 29.630 0.00 0.00 30.75 1.89
1998 2193 8.877779 CCATTAATTTTGCAATCAACGGAAATA 58.122 29.630 0.00 0.00 30.75 1.40
1999 2194 7.605691 TCCATTAATTTTGCAATCAACGGAAAT 59.394 29.630 0.00 0.00 30.75 2.17
2000 2195 6.931281 TCCATTAATTTTGCAATCAACGGAAA 59.069 30.769 0.00 0.00 30.75 3.13
2001 2196 6.459066 TCCATTAATTTTGCAATCAACGGAA 58.541 32.000 0.00 0.00 30.75 4.30
2002 2197 6.030548 TCCATTAATTTTGCAATCAACGGA 57.969 33.333 0.00 0.00 30.75 4.69
2003 2198 6.718454 TTCCATTAATTTTGCAATCAACGG 57.282 33.333 0.00 0.00 30.75 4.44
2004 2199 7.235777 CCTTTCCATTAATTTTGCAATCAACG 58.764 34.615 0.00 0.00 30.75 4.10
2005 2200 7.361971 CCCCTTTCCATTAATTTTGCAATCAAC 60.362 37.037 0.00 0.00 30.75 3.18
2006 2201 6.658391 CCCCTTTCCATTAATTTTGCAATCAA 59.342 34.615 0.00 0.00 0.00 2.57
2007 2202 6.179040 CCCCTTTCCATTAATTTTGCAATCA 58.821 36.000 0.00 0.00 0.00 2.57
2008 2203 6.093909 CACCCCTTTCCATTAATTTTGCAATC 59.906 38.462 0.00 0.00 0.00 2.67
2009 2204 5.945191 CACCCCTTTCCATTAATTTTGCAAT 59.055 36.000 0.00 0.00 0.00 3.56
2010 2205 5.163152 ACACCCCTTTCCATTAATTTTGCAA 60.163 36.000 0.00 0.00 0.00 4.08
2011 2206 4.349342 ACACCCCTTTCCATTAATTTTGCA 59.651 37.500 0.00 0.00 0.00 4.08
2012 2207 4.694982 CACACCCCTTTCCATTAATTTTGC 59.305 41.667 0.00 0.00 0.00 3.68
2013 2208 6.107901 TCACACCCCTTTCCATTAATTTTG 57.892 37.500 0.00 0.00 0.00 2.44
2014 2209 5.279960 GCTCACACCCCTTTCCATTAATTTT 60.280 40.000 0.00 0.00 0.00 1.82
2015 2210 4.222810 GCTCACACCCCTTTCCATTAATTT 59.777 41.667 0.00 0.00 0.00 1.82
2016 2211 3.769300 GCTCACACCCCTTTCCATTAATT 59.231 43.478 0.00 0.00 0.00 1.40
2017 2212 3.365472 GCTCACACCCCTTTCCATTAAT 58.635 45.455 0.00 0.00 0.00 1.40
2018 2213 2.556559 GGCTCACACCCCTTTCCATTAA 60.557 50.000 0.00 0.00 0.00 1.40
2019 2214 1.005450 GGCTCACACCCCTTTCCATTA 59.995 52.381 0.00 0.00 0.00 1.90
2020 2215 0.251787 GGCTCACACCCCTTTCCATT 60.252 55.000 0.00 0.00 0.00 3.16
2021 2216 1.384191 GGCTCACACCCCTTTCCAT 59.616 57.895 0.00 0.00 0.00 3.41
2022 2217 2.840753 GGGCTCACACCCCTTTCCA 61.841 63.158 0.00 0.00 45.00 3.53
2023 2218 2.035783 GGGCTCACACCCCTTTCC 59.964 66.667 0.00 0.00 45.00 3.13
2030 2225 2.969300 TTTCCAACCGGGCTCACACC 62.969 60.000 6.32 0.00 36.21 4.16
2031 2226 1.104577 TTTTCCAACCGGGCTCACAC 61.105 55.000 6.32 0.00 36.21 3.82
2032 2227 0.395862 TTTTTCCAACCGGGCTCACA 60.396 50.000 6.32 0.00 36.21 3.58
2033 2228 2.421220 TTTTTCCAACCGGGCTCAC 58.579 52.632 6.32 0.00 36.21 3.51
2051 2246 7.283807 ACAACGGAACCTTAATACAGAGTTTTT 59.716 33.333 0.00 0.00 0.00 1.94
2052 2247 6.769341 ACAACGGAACCTTAATACAGAGTTTT 59.231 34.615 0.00 0.00 0.00 2.43
2053 2248 6.293698 ACAACGGAACCTTAATACAGAGTTT 58.706 36.000 0.00 0.00 0.00 2.66
2054 2249 5.861727 ACAACGGAACCTTAATACAGAGTT 58.138 37.500 0.00 0.00 0.00 3.01
2055 2250 5.245526 AGACAACGGAACCTTAATACAGAGT 59.754 40.000 0.00 0.00 0.00 3.24
2056 2251 5.721232 AGACAACGGAACCTTAATACAGAG 58.279 41.667 0.00 0.00 0.00 3.35
2057 2252 5.733620 AGACAACGGAACCTTAATACAGA 57.266 39.130 0.00 0.00 0.00 3.41
2058 2253 5.699458 ACAAGACAACGGAACCTTAATACAG 59.301 40.000 0.00 0.00 0.00 2.74
2059 2254 5.613329 ACAAGACAACGGAACCTTAATACA 58.387 37.500 0.00 0.00 0.00 2.29
2060 2255 5.930569 AGACAAGACAACGGAACCTTAATAC 59.069 40.000 0.00 0.00 0.00 1.89
2061 2256 5.929992 CAGACAAGACAACGGAACCTTAATA 59.070 40.000 0.00 0.00 0.00 0.98
2062 2257 4.755123 CAGACAAGACAACGGAACCTTAAT 59.245 41.667 0.00 0.00 0.00 1.40
2063 2258 4.124238 CAGACAAGACAACGGAACCTTAA 58.876 43.478 0.00 0.00 0.00 1.85
2064 2259 3.133362 ACAGACAAGACAACGGAACCTTA 59.867 43.478 0.00 0.00 0.00 2.69
2065 2260 2.093128 ACAGACAAGACAACGGAACCTT 60.093 45.455 0.00 0.00 0.00 3.50
2100 2297 8.672815 ACAATTTTGTTCGTTTTGGAAAATCAT 58.327 25.926 0.00 0.00 38.47 2.45
2176 2373 2.355756 CTCTTTCTCGAGGCTCTGAGAG 59.644 54.545 26.17 20.51 41.87 3.20
2178 2375 2.097466 GTCTCTTTCTCGAGGCTCTGAG 59.903 54.545 22.16 22.16 32.97 3.35
2181 2378 1.091537 CGTCTCTTTCTCGAGGCTCT 58.908 55.000 13.56 0.00 33.55 4.09
2184 2381 0.741915 ATCCGTCTCTTTCTCGAGGC 59.258 55.000 13.56 0.00 32.39 4.70
2185 2382 3.207778 AGTATCCGTCTCTTTCTCGAGG 58.792 50.000 13.56 0.00 0.00 4.63
2186 2383 4.095185 ACAAGTATCCGTCTCTTTCTCGAG 59.905 45.833 5.93 5.93 0.00 4.04
2187 2384 4.008330 ACAAGTATCCGTCTCTTTCTCGA 58.992 43.478 0.00 0.00 0.00 4.04
2188 2385 4.099120 CACAAGTATCCGTCTCTTTCTCG 58.901 47.826 0.00 0.00 0.00 4.04
2219 2429 4.809070 GCTCAGGCTGAAAGGTGT 57.191 55.556 19.29 0.00 35.22 4.16
2231 2441 3.854809 GCTTGAGTAACGTTCTAGCTCAG 59.145 47.826 2.82 9.62 39.34 3.35
2233 2443 3.854809 CAGCTTGAGTAACGTTCTAGCTC 59.145 47.826 17.86 14.90 45.99 4.09


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.