Multiple sequence alignment - TraesCS4D01G350000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G350000 chr4D 100.000 4786 0 0 1 4786 502562616 502557831 0.000000e+00 8839.0
1 TraesCS4D01G350000 chr4B 88.994 3816 205 91 1048 4720 646925185 646921442 0.000000e+00 4521.0
2 TraesCS4D01G350000 chr4B 84.748 754 58 23 3466 4197 646920595 646919877 0.000000e+00 702.0
3 TraesCS4D01G350000 chr4B 88.347 472 43 6 6 476 646925934 646925474 1.500000e-154 556.0
4 TraesCS4D01G350000 chr4B 83.658 514 45 21 4237 4720 646919877 646919373 9.450000e-122 448.0
5 TraesCS4D01G350000 chr4B 90.000 60 5 1 857 916 646925231 646925173 5.140000e-10 76.8
6 TraesCS4D01G350000 chr4B 95.000 40 2 0 4747 4786 646918400 646918361 4.000000e-06 63.9
7 TraesCS4D01G350000 chr5A 89.176 1783 113 33 3019 4759 685961475 685959731 0.000000e+00 2150.0
8 TraesCS4D01G350000 chr5A 82.512 1218 123 39 1800 2965 685962681 685961502 0.000000e+00 987.0
9 TraesCS4D01G350000 chr5A 86.625 800 57 33 1048 1810 685963783 685962997 0.000000e+00 839.0
10 TraesCS4D01G350000 chr5A 87.917 480 47 7 1 476 685968752 685968280 5.410000e-154 555.0
11 TraesCS4D01G350000 chr5A 81.657 338 42 12 542 860 638129429 638129093 3.670000e-66 263.0
12 TraesCS4D01G350000 chr5A 94.521 73 3 1 471 542 685967610 685967538 1.410000e-20 111.0
13 TraesCS4D01G350000 chr5A 97.297 37 1 0 857 893 685967553 685967517 4.000000e-06 63.9
14 TraesCS4D01G350000 chr5D 84.132 334 35 10 541 860 293363856 293363527 1.670000e-79 307.0
15 TraesCS4D01G350000 chr7A 82.544 338 35 16 540 860 183304282 183303952 4.720000e-70 276.0
16 TraesCS4D01G350000 chr7A 91.954 87 7 0 926 1012 3798976 3798890 6.500000e-24 122.0
17 TraesCS4D01G350000 chr2B 81.846 325 46 11 539 860 411523342 411523028 1.320000e-65 261.0
18 TraesCS4D01G350000 chr4A 80.547 329 49 14 541 860 30813199 30813521 6.190000e-59 239.0
19 TraesCS4D01G350000 chr4A 79.403 335 40 13 542 864 418061596 418061913 4.850000e-50 209.0
20 TraesCS4D01G350000 chr4A 78.302 318 49 13 541 846 684508557 684508248 2.270000e-43 187.0
21 TraesCS4D01G350000 chr4A 90.000 70 7 0 940 1009 58507354 58507423 1.830000e-14 91.6
22 TraesCS4D01G350000 chr7D 80.615 325 45 12 542 860 548329704 548330016 8.010000e-58 235.0
23 TraesCS4D01G350000 chr7B 79.341 334 53 10 541 860 963681 963350 2.240000e-53 220.0
24 TraesCS4D01G350000 chr7B 79.062 320 49 14 540 851 747428383 747428074 2.260000e-48 204.0
25 TraesCS4D01G350000 chr7B 90.588 85 7 1 912 995 126840160 126840244 1.410000e-20 111.0
26 TraesCS4D01G350000 chr1B 78.963 328 58 10 540 862 445192522 445192201 3.750000e-51 213.0
27 TraesCS4D01G350000 chr1B 78.769 325 51 15 1429 1746 353277175 353276862 8.120000e-48 202.0
28 TraesCS4D01G350000 chr5B 78.788 330 56 13 540 862 5101364 5101042 4.850000e-50 209.0
29 TraesCS4D01G350000 chr5B 76.877 333 63 11 539 862 158926048 158926375 4.920000e-40 176.0
30 TraesCS4D01G350000 chr2D 78.947 342 46 15 539 860 181585051 181584716 4.850000e-50 209.0
31 TraesCS4D01G350000 chr2D 78.927 261 42 9 611 860 461307521 461307779 1.070000e-36 165.0
32 TraesCS4D01G350000 chr1A 78.834 326 49 16 1429 1746 341017534 341017221 8.120000e-48 202.0
33 TraesCS4D01G350000 chr1D 78.221 326 51 16 1429 1746 259777681 259777994 1.760000e-44 191.0
34 TraesCS4D01G350000 chr1D 88.750 80 9 0 924 1003 37203049 37203128 1.100000e-16 99.0
35 TraesCS4D01G350000 chr6B 84.028 144 9 5 917 1046 485868654 485868511 5.030000e-25 126.0
36 TraesCS4D01G350000 chrUn 81.699 153 21 6 547 697 82609697 82609550 2.340000e-23 121.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G350000 chr4D 502557831 502562616 4785 True 8839.000000 8839 100.000000 1 4786 1 chr4D.!!$R1 4785
1 TraesCS4D01G350000 chr4B 646918361 646925934 7573 True 1061.283333 4521 88.457833 6 4786 6 chr4B.!!$R1 4780
2 TraesCS4D01G350000 chr5A 685959731 685968752 9021 True 784.316667 2150 89.674667 1 4759 6 chr5A.!!$R2 4758

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
790 1478 0.034896 AACAACCATCGAGCGAAGGT 59.965 50.000 13.36 13.36 46.62 3.50 F
814 1502 0.173708 GAAGAAGGCGGAGATGACGT 59.826 55.000 0.00 0.00 0.00 4.34 F
1145 5413 0.176910 CTCTTCCCTTTCCTCTCGCC 59.823 60.000 0.00 0.00 0.00 5.54 F
1618 5920 0.177373 GGTACCTCATGGGGTTCGTC 59.823 60.000 25.56 11.14 40.48 4.20 F
3513 8215 1.068194 CGGACAGAGAGAGTGGTTGAC 60.068 57.143 0.00 0.00 0.00 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2692 7392 1.154112 GTGGCAACCGCGGTATTTG 60.154 57.895 34.44 27.00 39.92 2.32 R
2710 7410 5.482006 TGATTACCTCATCGATATGCAAGG 58.518 41.667 0.00 3.17 34.62 3.61 R
2948 7650 6.005823 TCTGACCAAACAATCATCATCAAGT 58.994 36.000 0.00 0.00 0.00 3.16 R
3595 8307 0.388649 CGCTCACGACCTACTGCTTT 60.389 55.000 0.00 0.00 43.93 3.51 R
4609 11434 0.890683 CACAGGTTGGCAGGATTTCC 59.109 55.000 0.00 0.00 0.00 3.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
55 60 6.839124 AAGTGCATTCCATATTCTCACAAA 57.161 33.333 0.00 0.00 0.00 2.83
60 65 7.747799 GTGCATTCCATATTCTCACAAATATCG 59.252 37.037 0.00 0.00 31.03 2.92
97 102 7.841915 AAGTTGTCCAAATTTTTAGTTGGTG 57.158 32.000 4.54 0.00 44.01 4.17
112 117 2.427095 GTTGGTGCCTGTTTCTGTTCTT 59.573 45.455 0.00 0.00 0.00 2.52
123 128 6.461509 CCTGTTTCTGTTCTTATGGTTTTGCT 60.462 38.462 0.00 0.00 0.00 3.91
141 146 5.726980 TTGCTTTGACTATGCCTTCAATT 57.273 34.783 0.00 0.00 31.87 2.32
150 155 1.532523 TGCCTTCAATTGCGTCATCA 58.467 45.000 0.00 0.00 0.00 3.07
201 206 1.442886 AAGGATCAAAGGGTGGGGCA 61.443 55.000 0.00 0.00 0.00 5.36
227 232 1.270094 GGTAAGGTTTTGGTGCCTTGC 60.270 52.381 6.13 4.71 44.11 4.01
246 251 3.564027 GTGCATACGACGGCCAGC 61.564 66.667 2.24 0.00 0.00 4.85
274 279 4.350346 GTGGGTTACACCGTTAAAAACAC 58.650 43.478 0.00 0.00 44.49 3.32
307 312 4.156190 CACGAGTGGATGTGAAGTAGTAGT 59.844 45.833 0.00 0.00 38.36 2.73
451 456 3.967332 ATGGAAAACATTGAGCCCAAG 57.033 42.857 0.00 0.00 35.97 3.61
526 1214 4.869297 CGTATATGACGTTTGGTACCCAAA 59.131 41.667 10.07 7.39 45.60 3.28
533 1221 3.418022 TTGGTACCCAAAACCCGTC 57.582 52.632 10.07 0.00 40.92 4.79
534 1222 0.534652 TTGGTACCCAAAACCCGTCG 60.535 55.000 10.07 0.00 40.92 5.12
535 1223 1.672030 GGTACCCAAAACCCGTCGG 60.672 63.158 3.60 3.60 0.00 4.79
536 1224 2.032376 TACCCAAAACCCGTCGGC 59.968 61.111 5.50 0.00 0.00 5.54
537 1225 3.880162 TACCCAAAACCCGTCGGCG 62.880 63.158 0.29 0.29 37.95 6.46
559 1247 3.970610 GGTTTACCGAAAAAGACTTTCGC 59.029 43.478 12.82 0.00 46.89 4.70
560 1248 3.883631 TTACCGAAAAAGACTTTCGCC 57.116 42.857 12.82 0.00 46.89 5.54
561 1249 0.949397 ACCGAAAAAGACTTTCGCCC 59.051 50.000 12.82 0.00 46.89 6.13
562 1250 0.240145 CCGAAAAAGACTTTCGCCCC 59.760 55.000 12.82 0.00 46.89 5.80
563 1251 0.110373 CGAAAAAGACTTTCGCCCCG 60.110 55.000 0.00 0.00 43.52 5.73
564 1252 0.386858 GAAAAAGACTTTCGCCCCGC 60.387 55.000 0.00 0.00 0.00 6.13
565 1253 0.822121 AAAAAGACTTTCGCCCCGCT 60.822 50.000 0.00 0.00 0.00 5.52
566 1254 0.822121 AAAAGACTTTCGCCCCGCTT 60.822 50.000 0.00 0.00 0.00 4.68
567 1255 0.822121 AAAGACTTTCGCCCCGCTTT 60.822 50.000 0.00 0.00 0.00 3.51
568 1256 0.035739 AAGACTTTCGCCCCGCTTTA 59.964 50.000 0.00 0.00 0.00 1.85
569 1257 0.252197 AGACTTTCGCCCCGCTTTAT 59.748 50.000 0.00 0.00 0.00 1.40
570 1258 1.483415 AGACTTTCGCCCCGCTTTATA 59.517 47.619 0.00 0.00 0.00 0.98
571 1259 2.093341 AGACTTTCGCCCCGCTTTATAA 60.093 45.455 0.00 0.00 0.00 0.98
572 1260 2.679336 GACTTTCGCCCCGCTTTATAAA 59.321 45.455 0.00 0.00 0.00 1.40
573 1261 3.284617 ACTTTCGCCCCGCTTTATAAAT 58.715 40.909 0.00 0.00 0.00 1.40
574 1262 4.453751 ACTTTCGCCCCGCTTTATAAATA 58.546 39.130 0.00 0.00 0.00 1.40
575 1263 4.883006 ACTTTCGCCCCGCTTTATAAATAA 59.117 37.500 0.00 0.00 0.00 1.40
576 1264 5.357596 ACTTTCGCCCCGCTTTATAAATAAA 59.642 36.000 0.00 0.00 0.00 1.40
577 1265 5.831702 TTCGCCCCGCTTTATAAATAAAA 57.168 34.783 0.00 0.00 32.39 1.52
578 1266 5.172460 TCGCCCCGCTTTATAAATAAAAC 57.828 39.130 0.00 0.00 32.39 2.43
579 1267 4.639310 TCGCCCCGCTTTATAAATAAAACA 59.361 37.500 0.00 0.00 32.39 2.83
580 1268 5.125097 TCGCCCCGCTTTATAAATAAAACAA 59.875 36.000 0.00 0.00 32.39 2.83
581 1269 5.805994 CGCCCCGCTTTATAAATAAAACAAA 59.194 36.000 0.00 0.00 32.39 2.83
582 1270 6.237622 CGCCCCGCTTTATAAATAAAACAAAC 60.238 38.462 0.00 0.00 32.39 2.93
583 1271 6.036300 GCCCCGCTTTATAAATAAAACAAACC 59.964 38.462 0.00 0.00 32.39 3.27
584 1272 7.097834 CCCCGCTTTATAAATAAAACAAACCA 58.902 34.615 0.00 0.00 32.39 3.67
585 1273 7.063662 CCCCGCTTTATAAATAAAACAAACCAC 59.936 37.037 0.00 0.00 32.39 4.16
586 1274 7.063662 CCCGCTTTATAAATAAAACAAACCACC 59.936 37.037 0.00 0.00 32.39 4.61
587 1275 7.599245 CCGCTTTATAAATAAAACAAACCACCA 59.401 33.333 0.00 0.00 32.39 4.17
588 1276 8.429299 CGCTTTATAAATAAAACAAACCACCAC 58.571 33.333 0.00 0.00 32.39 4.16
589 1277 9.262358 GCTTTATAAATAAAACAAACCACCACA 57.738 29.630 0.00 0.00 32.39 4.17
593 1281 6.429791 AAATAAAACAAACCACCACAAAGC 57.570 33.333 0.00 0.00 0.00 3.51
594 1282 3.409026 AAAACAAACCACCACAAAGCA 57.591 38.095 0.00 0.00 0.00 3.91
595 1283 3.409026 AAACAAACCACCACAAAGCAA 57.591 38.095 0.00 0.00 0.00 3.91
596 1284 3.625649 AACAAACCACCACAAAGCAAT 57.374 38.095 0.00 0.00 0.00 3.56
597 1285 3.177997 ACAAACCACCACAAAGCAATC 57.822 42.857 0.00 0.00 0.00 2.67
598 1286 2.499289 ACAAACCACCACAAAGCAATCA 59.501 40.909 0.00 0.00 0.00 2.57
599 1287 3.134442 ACAAACCACCACAAAGCAATCAT 59.866 39.130 0.00 0.00 0.00 2.45
600 1288 4.343526 ACAAACCACCACAAAGCAATCATA 59.656 37.500 0.00 0.00 0.00 2.15
601 1289 4.519540 AACCACCACAAAGCAATCATAC 57.480 40.909 0.00 0.00 0.00 2.39
602 1290 3.495331 ACCACCACAAAGCAATCATACA 58.505 40.909 0.00 0.00 0.00 2.29
603 1291 3.255642 ACCACCACAAAGCAATCATACAC 59.744 43.478 0.00 0.00 0.00 2.90
604 1292 3.491356 CACCACAAAGCAATCATACACG 58.509 45.455 0.00 0.00 0.00 4.49
605 1293 2.487762 ACCACAAAGCAATCATACACGG 59.512 45.455 0.00 0.00 0.00 4.94
606 1294 2.746904 CCACAAAGCAATCATACACGGA 59.253 45.455 0.00 0.00 0.00 4.69
607 1295 3.426159 CCACAAAGCAATCATACACGGAC 60.426 47.826 0.00 0.00 0.00 4.79
608 1296 3.436704 CACAAAGCAATCATACACGGACT 59.563 43.478 0.00 0.00 0.00 3.85
609 1297 4.629634 CACAAAGCAATCATACACGGACTA 59.370 41.667 0.00 0.00 0.00 2.59
610 1298 4.870426 ACAAAGCAATCATACACGGACTAG 59.130 41.667 0.00 0.00 0.00 2.57
611 1299 4.737855 AAGCAATCATACACGGACTAGT 57.262 40.909 0.00 0.00 0.00 2.57
612 1300 4.737855 AGCAATCATACACGGACTAGTT 57.262 40.909 0.00 0.00 0.00 2.24
613 1301 4.683832 AGCAATCATACACGGACTAGTTC 58.316 43.478 0.00 0.00 0.00 3.01
614 1302 4.159693 AGCAATCATACACGGACTAGTTCA 59.840 41.667 1.17 0.00 0.00 3.18
615 1303 4.267928 GCAATCATACACGGACTAGTTCAC 59.732 45.833 1.17 0.00 0.00 3.18
616 1304 5.407502 CAATCATACACGGACTAGTTCACA 58.592 41.667 1.17 0.00 0.00 3.58
617 1305 5.654603 ATCATACACGGACTAGTTCACAA 57.345 39.130 1.17 0.00 0.00 3.33
618 1306 4.801891 TCATACACGGACTAGTTCACAAC 58.198 43.478 1.17 0.00 0.00 3.32
619 1307 4.278919 TCATACACGGACTAGTTCACAACA 59.721 41.667 1.17 0.00 0.00 3.33
620 1308 2.817901 ACACGGACTAGTTCACAACAC 58.182 47.619 1.17 0.00 0.00 3.32
621 1309 2.166870 ACACGGACTAGTTCACAACACA 59.833 45.455 1.17 0.00 0.00 3.72
622 1310 2.538449 CACGGACTAGTTCACAACACAC 59.462 50.000 1.17 0.00 0.00 3.82
623 1311 2.166870 ACGGACTAGTTCACAACACACA 59.833 45.455 1.17 0.00 0.00 3.72
624 1312 2.538449 CGGACTAGTTCACAACACACAC 59.462 50.000 1.17 0.00 0.00 3.82
625 1313 3.527533 GGACTAGTTCACAACACACACA 58.472 45.455 0.00 0.00 0.00 3.72
626 1314 3.308866 GGACTAGTTCACAACACACACAC 59.691 47.826 0.00 0.00 0.00 3.82
627 1315 3.930229 GACTAGTTCACAACACACACACA 59.070 43.478 0.00 0.00 0.00 3.72
628 1316 3.682858 ACTAGTTCACAACACACACACAC 59.317 43.478 0.00 0.00 0.00 3.82
629 1317 1.810151 AGTTCACAACACACACACACC 59.190 47.619 0.00 0.00 0.00 4.16
630 1318 1.135517 GTTCACAACACACACACACCC 60.136 52.381 0.00 0.00 0.00 4.61
631 1319 0.036875 TCACAACACACACACACCCA 59.963 50.000 0.00 0.00 0.00 4.51
632 1320 0.884514 CACAACACACACACACCCAA 59.115 50.000 0.00 0.00 0.00 4.12
633 1321 1.270826 CACAACACACACACACCCAAA 59.729 47.619 0.00 0.00 0.00 3.28
634 1322 1.964223 ACAACACACACACACCCAAAA 59.036 42.857 0.00 0.00 0.00 2.44
635 1323 2.564947 ACAACACACACACACCCAAAAT 59.435 40.909 0.00 0.00 0.00 1.82
636 1324 2.928757 CAACACACACACACCCAAAATG 59.071 45.455 0.00 0.00 0.00 2.32
637 1325 1.134848 ACACACACACACCCAAAATGC 60.135 47.619 0.00 0.00 0.00 3.56
638 1326 1.134877 CACACACACACCCAAAATGCA 60.135 47.619 0.00 0.00 0.00 3.96
639 1327 1.134848 ACACACACACCCAAAATGCAC 60.135 47.619 0.00 0.00 0.00 4.57
640 1328 0.102120 ACACACACCCAAAATGCACG 59.898 50.000 0.00 0.00 0.00 5.34
641 1329 0.383590 CACACACCCAAAATGCACGA 59.616 50.000 0.00 0.00 0.00 4.35
642 1330 0.383949 ACACACCCAAAATGCACGAC 59.616 50.000 0.00 0.00 0.00 4.34
643 1331 0.383590 CACACCCAAAATGCACGACA 59.616 50.000 0.00 0.00 0.00 4.35
644 1332 1.000385 CACACCCAAAATGCACGACAT 60.000 47.619 0.00 0.00 42.30 3.06
645 1333 2.227626 CACACCCAAAATGCACGACATA 59.772 45.455 0.00 0.00 38.34 2.29
646 1334 2.487762 ACACCCAAAATGCACGACATAG 59.512 45.455 0.00 0.00 38.34 2.23
647 1335 2.746904 CACCCAAAATGCACGACATAGA 59.253 45.455 0.00 0.00 38.34 1.98
648 1336 3.009723 ACCCAAAATGCACGACATAGAG 58.990 45.455 0.00 0.00 38.34 2.43
649 1337 3.009723 CCCAAAATGCACGACATAGAGT 58.990 45.455 0.00 0.00 38.34 3.24
650 1338 4.188462 CCCAAAATGCACGACATAGAGTA 58.812 43.478 0.00 0.00 38.34 2.59
651 1339 4.034048 CCCAAAATGCACGACATAGAGTAC 59.966 45.833 0.00 0.00 38.34 2.73
652 1340 4.629634 CCAAAATGCACGACATAGAGTACA 59.370 41.667 0.00 0.00 38.34 2.90
653 1341 5.121611 CCAAAATGCACGACATAGAGTACAA 59.878 40.000 0.00 0.00 38.34 2.41
654 1342 6.348132 CCAAAATGCACGACATAGAGTACAAA 60.348 38.462 0.00 0.00 38.34 2.83
655 1343 6.408858 AAATGCACGACATAGAGTACAAAG 57.591 37.500 0.00 0.00 38.34 2.77
656 1344 4.776795 TGCACGACATAGAGTACAAAGA 57.223 40.909 0.00 0.00 0.00 2.52
657 1345 5.324784 TGCACGACATAGAGTACAAAGAT 57.675 39.130 0.00 0.00 0.00 2.40
658 1346 5.720202 TGCACGACATAGAGTACAAAGATT 58.280 37.500 0.00 0.00 0.00 2.40
659 1347 5.805486 TGCACGACATAGAGTACAAAGATTC 59.195 40.000 0.00 0.00 0.00 2.52
660 1348 6.037098 GCACGACATAGAGTACAAAGATTCT 58.963 40.000 0.00 0.00 0.00 2.40
661 1349 7.148137 TGCACGACATAGAGTACAAAGATTCTA 60.148 37.037 0.00 0.00 0.00 2.10
662 1350 7.166142 GCACGACATAGAGTACAAAGATTCTAC 59.834 40.741 0.00 0.00 0.00 2.59
663 1351 8.399425 CACGACATAGAGTACAAAGATTCTACT 58.601 37.037 0.00 0.00 0.00 2.57
664 1352 9.610705 ACGACATAGAGTACAAAGATTCTACTA 57.389 33.333 0.00 0.00 0.00 1.82
669 1357 7.114866 AGAGTACAAAGATTCTACTAAGGGC 57.885 40.000 0.00 0.00 0.00 5.19
670 1358 6.668283 AGAGTACAAAGATTCTACTAAGGGCA 59.332 38.462 0.00 0.00 0.00 5.36
671 1359 6.641474 AGTACAAAGATTCTACTAAGGGCAC 58.359 40.000 0.00 0.00 0.00 5.01
672 1360 5.499004 ACAAAGATTCTACTAAGGGCACA 57.501 39.130 0.00 0.00 0.00 4.57
673 1361 5.491982 ACAAAGATTCTACTAAGGGCACAG 58.508 41.667 0.00 0.00 0.00 3.66
674 1362 5.013183 ACAAAGATTCTACTAAGGGCACAGT 59.987 40.000 0.00 0.00 0.00 3.55
675 1363 5.763876 AAGATTCTACTAAGGGCACAGTT 57.236 39.130 0.00 0.00 0.00 3.16
676 1364 5.346181 AGATTCTACTAAGGGCACAGTTC 57.654 43.478 0.00 0.00 0.00 3.01
677 1365 4.777896 AGATTCTACTAAGGGCACAGTTCA 59.222 41.667 0.00 0.00 0.00 3.18
678 1366 4.967084 TTCTACTAAGGGCACAGTTCAA 57.033 40.909 0.00 0.00 0.00 2.69
679 1367 4.267349 TCTACTAAGGGCACAGTTCAAC 57.733 45.455 0.00 0.00 0.00 3.18
680 1368 3.644265 TCTACTAAGGGCACAGTTCAACA 59.356 43.478 0.00 0.00 0.00 3.33
681 1369 3.290948 ACTAAGGGCACAGTTCAACAA 57.709 42.857 0.00 0.00 0.00 2.83
682 1370 3.214328 ACTAAGGGCACAGTTCAACAAG 58.786 45.455 0.00 0.00 0.00 3.16
683 1371 0.746659 AAGGGCACAGTTCAACAAGC 59.253 50.000 0.00 0.00 0.00 4.01
684 1372 1.109323 AGGGCACAGTTCAACAAGCC 61.109 55.000 8.88 8.88 41.29 4.35
685 1373 1.363807 GGCACAGTTCAACAAGCCC 59.636 57.895 6.64 0.00 36.17 5.19
686 1374 1.391157 GGCACAGTTCAACAAGCCCA 61.391 55.000 6.64 0.00 36.17 5.36
687 1375 0.459489 GCACAGTTCAACAAGCCCAA 59.541 50.000 0.00 0.00 0.00 4.12
688 1376 1.134848 GCACAGTTCAACAAGCCCAAA 60.135 47.619 0.00 0.00 0.00 3.28
689 1377 2.676463 GCACAGTTCAACAAGCCCAAAA 60.676 45.455 0.00 0.00 0.00 2.44
690 1378 3.594134 CACAGTTCAACAAGCCCAAAAA 58.406 40.909 0.00 0.00 0.00 1.94
706 1394 2.439245 AAAAAGACCGGGGGAGGC 59.561 61.111 6.32 0.00 33.69 4.70
707 1395 3.219788 AAAAAGACCGGGGGAGGCC 62.220 63.158 6.32 0.00 33.69 5.19
730 1418 3.878667 GAGCGCCTGGCCCCTAAT 61.879 66.667 14.12 0.00 45.17 1.73
731 1419 3.834013 GAGCGCCTGGCCCCTAATC 62.834 68.421 14.12 0.00 45.17 1.75
732 1420 3.878667 GCGCCTGGCCCCTAATCT 61.879 66.667 14.12 0.00 34.80 2.40
733 1421 2.111878 CGCCTGGCCCCTAATCTG 59.888 66.667 14.12 0.00 0.00 2.90
734 1422 2.517919 GCCTGGCCCCTAATCTGG 59.482 66.667 7.66 0.00 0.00 3.86
739 1427 2.427753 GCCCCTAATCTGGCTCGG 59.572 66.667 0.00 0.00 44.46 4.63
740 1428 3.151906 CCCCTAATCTGGCTCGGG 58.848 66.667 0.00 0.00 34.62 5.14
741 1429 3.151906 CCCTAATCTGGCTCGGGG 58.848 66.667 0.00 0.00 0.00 5.73
742 1430 2.520536 CCCTAATCTGGCTCGGGGG 61.521 68.421 0.00 0.00 0.00 5.40
778 1466 3.429043 GGCGATAGACGAACAACCA 57.571 52.632 0.00 0.00 45.77 3.67
779 1467 1.935933 GGCGATAGACGAACAACCAT 58.064 50.000 0.00 0.00 45.77 3.55
780 1468 1.859080 GGCGATAGACGAACAACCATC 59.141 52.381 0.00 0.00 45.77 3.51
781 1469 1.517276 GCGATAGACGAACAACCATCG 59.483 52.381 0.00 0.00 45.77 3.84
782 1470 2.793585 GCGATAGACGAACAACCATCGA 60.794 50.000 6.01 0.00 45.77 3.59
783 1471 3.036633 CGATAGACGAACAACCATCGAG 58.963 50.000 2.65 0.00 45.77 4.04
784 1472 2.273370 TAGACGAACAACCATCGAGC 57.727 50.000 2.65 0.00 42.76 5.03
785 1473 0.732880 AGACGAACAACCATCGAGCG 60.733 55.000 2.65 0.00 42.76 5.03
786 1474 0.731514 GACGAACAACCATCGAGCGA 60.732 55.000 2.65 0.00 42.76 4.93
787 1475 0.319211 ACGAACAACCATCGAGCGAA 60.319 50.000 2.65 0.00 42.76 4.70
788 1476 0.366871 CGAACAACCATCGAGCGAAG 59.633 55.000 0.00 0.00 42.76 3.79
789 1477 0.721718 GAACAACCATCGAGCGAAGG 59.278 55.000 12.07 12.07 38.78 3.46
790 1478 0.034896 AACAACCATCGAGCGAAGGT 59.965 50.000 13.36 13.36 46.62 3.50
799 1487 3.371063 AGCGAAGGTCGGCGAAGA 61.371 61.111 12.92 0.00 40.84 2.87
800 1488 2.431942 GCGAAGGTCGGCGAAGAA 60.432 61.111 12.92 0.00 40.84 2.52
801 1489 2.445438 GCGAAGGTCGGCGAAGAAG 61.445 63.158 12.92 3.57 40.84 2.85
802 1490 1.805945 CGAAGGTCGGCGAAGAAGG 60.806 63.158 12.92 0.00 36.00 3.46
803 1491 2.047179 AAGGTCGGCGAAGAAGGC 60.047 61.111 12.92 0.00 0.00 4.35
809 1497 2.501610 GGCGAAGAAGGCGGAGAT 59.498 61.111 0.00 0.00 0.00 2.75
810 1498 1.884926 GGCGAAGAAGGCGGAGATG 60.885 63.158 0.00 0.00 0.00 2.90
811 1499 1.141881 GCGAAGAAGGCGGAGATGA 59.858 57.895 0.00 0.00 0.00 2.92
812 1500 1.148759 GCGAAGAAGGCGGAGATGAC 61.149 60.000 0.00 0.00 0.00 3.06
813 1501 0.867753 CGAAGAAGGCGGAGATGACG 60.868 60.000 0.00 0.00 0.00 4.35
814 1502 0.173708 GAAGAAGGCGGAGATGACGT 59.826 55.000 0.00 0.00 0.00 4.34
815 1503 0.173708 AAGAAGGCGGAGATGACGTC 59.826 55.000 9.11 9.11 35.94 4.34
817 1505 0.248702 GAAGGCGGAGATGACGTCTC 60.249 60.000 17.92 15.25 46.73 3.36
823 1511 2.783228 GAGATGACGTCTCGGTCCT 58.217 57.895 17.92 4.56 43.65 3.85
824 1512 0.378962 GAGATGACGTCTCGGTCCTG 59.621 60.000 17.92 0.00 43.65 3.86
825 1513 1.032657 AGATGACGTCTCGGTCCTGG 61.033 60.000 17.92 0.00 36.07 4.45
826 1514 2.005960 GATGACGTCTCGGTCCTGGG 62.006 65.000 17.92 0.00 36.07 4.45
827 1515 3.450115 GACGTCTCGGTCCTGGGG 61.450 72.222 8.70 0.00 0.00 4.96
836 1524 4.176752 GTCCTGGGGGCGGCTAAG 62.177 72.222 9.56 4.00 0.00 2.18
848 1536 4.179579 GCTAAGCGGCCGCCAAAG 62.180 66.667 44.47 35.89 43.17 2.77
849 1537 4.179579 CTAAGCGGCCGCCAAAGC 62.180 66.667 44.47 18.77 43.17 3.51
850 1538 4.715523 TAAGCGGCCGCCAAAGCT 62.716 61.111 44.47 24.50 43.17 3.74
854 1542 4.183686 CGGCCGCCAAAGCTCATG 62.184 66.667 14.67 0.00 36.60 3.07
855 1543 3.830192 GGCCGCCAAAGCTCATGG 61.830 66.667 12.97 12.97 41.08 3.66
899 1587 3.878160 TGAAAGGGGTTTTTGTGACAC 57.122 42.857 0.00 0.00 0.00 3.67
908 1596 4.398044 GGGTTTTTGTGACACAAGAAGAGA 59.602 41.667 21.01 4.51 39.53 3.10
909 1597 5.449177 GGGTTTTTGTGACACAAGAAGAGAG 60.449 44.000 21.01 0.00 39.53 3.20
910 1598 5.449177 GGTTTTTGTGACACAAGAAGAGAGG 60.449 44.000 21.01 0.00 39.53 3.69
912 1600 4.753516 TTGTGACACAAGAAGAGAGGAA 57.246 40.909 17.02 0.00 32.34 3.36
913 1601 4.327982 TGTGACACAAGAAGAGAGGAAG 57.672 45.455 5.62 0.00 0.00 3.46
915 1603 4.202161 TGTGACACAAGAAGAGAGGAAGTC 60.202 45.833 5.62 0.00 0.00 3.01
916 1604 3.960755 TGACACAAGAAGAGAGGAAGTCA 59.039 43.478 0.00 0.00 0.00 3.41
917 1605 4.405680 TGACACAAGAAGAGAGGAAGTCAA 59.594 41.667 0.00 0.00 31.36 3.18
919 1607 5.745227 ACACAAGAAGAGAGGAAGTCAAAA 58.255 37.500 0.00 0.00 0.00 2.44
920 1608 6.180472 ACACAAGAAGAGAGGAAGTCAAAAA 58.820 36.000 0.00 0.00 0.00 1.94
941 1629 6.401047 AAAAAGACCAACCTAAAGGCTAAC 57.599 37.500 0.00 0.00 39.32 2.34
942 1630 3.715638 AGACCAACCTAAAGGCTAACC 57.284 47.619 0.00 0.00 39.32 2.85
946 1634 2.629051 CAACCTAAAGGCTAACCCTCG 58.371 52.381 0.00 0.00 45.62 4.63
947 1635 1.948391 ACCTAAAGGCTAACCCTCGT 58.052 50.000 0.00 0.00 45.62 4.18
948 1636 2.263545 ACCTAAAGGCTAACCCTCGTT 58.736 47.619 0.00 0.00 45.62 3.85
949 1637 2.027469 ACCTAAAGGCTAACCCTCGTTG 60.027 50.000 0.00 0.00 45.62 4.10
950 1638 2.629051 CTAAAGGCTAACCCTCGTTGG 58.371 52.381 0.00 0.00 45.62 3.77
959 1647 5.638596 CTAACCCTCGTTGGCTTTTATTT 57.361 39.130 0.00 0.00 33.17 1.40
960 1648 6.746745 CTAACCCTCGTTGGCTTTTATTTA 57.253 37.500 0.00 0.00 33.17 1.40
962 1650 8.441312 CTAACCCTCGTTGGCTTTTATTTATA 57.559 34.615 0.00 0.00 33.17 0.98
963 1651 6.937436 ACCCTCGTTGGCTTTTATTTATAG 57.063 37.500 0.00 0.00 0.00 1.31
964 1652 5.826208 ACCCTCGTTGGCTTTTATTTATAGG 59.174 40.000 0.00 0.00 0.00 2.57
966 1654 6.204882 CCCTCGTTGGCTTTTATTTATAGGAG 59.795 42.308 0.00 0.00 0.00 3.69
968 1656 7.497909 CCTCGTTGGCTTTTATTTATAGGAGAA 59.502 37.037 0.00 0.00 0.00 2.87
969 1657 8.795842 TCGTTGGCTTTTATTTATAGGAGAAA 57.204 30.769 0.00 0.00 0.00 2.52
992 1680 2.872557 CGAGGACCGCGTGTAAGA 59.127 61.111 9.74 0.00 0.00 2.10
993 1681 1.226323 CGAGGACCGCGTGTAAGAG 60.226 63.158 9.74 0.00 0.00 2.85
995 1683 2.508663 GGACCGCGTGTAAGAGCC 60.509 66.667 4.92 0.00 0.00 4.70
996 1684 2.879462 GACCGCGTGTAAGAGCCG 60.879 66.667 4.92 0.00 0.00 5.52
997 1685 3.332493 GACCGCGTGTAAGAGCCGA 62.332 63.158 4.92 0.00 0.00 5.54
998 1686 2.579787 CCGCGTGTAAGAGCCGAG 60.580 66.667 4.92 0.00 0.00 4.63
999 1687 2.579787 CGCGTGTAAGAGCCGAGG 60.580 66.667 0.00 0.00 0.00 4.63
1000 1688 2.886124 GCGTGTAAGAGCCGAGGC 60.886 66.667 5.89 5.89 42.33 4.70
1028 1716 3.688159 GCAACCCAAGCTGCCCAG 61.688 66.667 0.00 0.00 32.18 4.45
1130 5398 1.450312 CCCGCATTCTTCGCCTCTT 60.450 57.895 0.00 0.00 0.00 2.85
1131 5399 1.432270 CCCGCATTCTTCGCCTCTTC 61.432 60.000 0.00 0.00 0.00 2.87
1135 5403 1.680249 GCATTCTTCGCCTCTTCCCTT 60.680 52.381 0.00 0.00 0.00 3.95
1137 5405 2.474410 TTCTTCGCCTCTTCCCTTTC 57.526 50.000 0.00 0.00 0.00 2.62
1141 5409 0.252284 TCGCCTCTTCCCTTTCCTCT 60.252 55.000 0.00 0.00 0.00 3.69
1145 5413 0.176910 CTCTTCCCTTTCCTCTCGCC 59.823 60.000 0.00 0.00 0.00 5.54
1147 5415 1.229529 TTCCCTTTCCTCTCGCCCT 60.230 57.895 0.00 0.00 0.00 5.19
1151 5419 1.592223 CTTTCCTCTCGCCCTCGTT 59.408 57.895 0.00 0.00 36.96 3.85
1165 5433 4.130281 CGTTCGCGCTCCCGTTTC 62.130 66.667 5.56 0.00 36.67 2.78
1166 5434 2.737376 GTTCGCGCTCCCGTTTCT 60.737 61.111 5.56 0.00 36.67 2.52
1167 5435 2.029964 TTCGCGCTCCCGTTTCTT 59.970 55.556 5.56 0.00 36.67 2.52
1171 5439 2.048503 CGCTCCCGTTTCTTCCGT 60.049 61.111 0.00 0.00 0.00 4.69
1172 5440 2.092882 CGCTCCCGTTTCTTCCGTC 61.093 63.158 0.00 0.00 0.00 4.79
1173 5441 1.005394 GCTCCCGTTTCTTCCGTCA 60.005 57.895 0.00 0.00 0.00 4.35
1204 5476 2.734673 GCGCTCCAGCTTCGAACAG 61.735 63.158 0.00 0.00 39.32 3.16
1312 5603 1.258197 GTTCTTGGCGCGTTAGCTATC 59.742 52.381 8.43 0.00 42.32 2.08
1318 5609 1.406447 GCGCGTTAGCTATCTGGTAC 58.594 55.000 8.43 0.00 42.32 3.34
1319 5610 1.671469 CGCGTTAGCTATCTGGTACG 58.329 55.000 8.65 8.65 42.32 3.67
1321 5612 2.662249 CGCGTTAGCTATCTGGTACGAG 60.662 54.545 15.59 9.55 42.32 4.18
1322 5613 2.917296 GCGTTAGCTATCTGGTACGAGC 60.917 54.545 15.59 0.00 41.01 5.03
1323 5614 2.548904 CGTTAGCTATCTGGTACGAGCT 59.451 50.000 7.46 5.26 36.53 4.09
1324 5615 3.364167 CGTTAGCTATCTGGTACGAGCTC 60.364 52.174 2.73 2.73 34.29 4.09
1330 5625 0.733150 TCTGGTACGAGCTCATCACG 59.267 55.000 15.40 1.87 34.89 4.35
1331 5626 0.733150 CTGGTACGAGCTCATCACGA 59.267 55.000 15.40 4.36 33.00 4.35
1343 5638 0.378610 CATCACGAGAGCTACGAGCA 59.621 55.000 17.48 3.55 45.56 4.26
1348 5643 1.806568 GAGAGCTACGAGCAGCACT 59.193 57.895 9.09 8.38 45.56 4.40
1349 5644 0.525242 GAGAGCTACGAGCAGCACTG 60.525 60.000 11.44 0.00 45.56 3.66
1351 5646 1.938657 GAGCTACGAGCAGCACTGGA 61.939 60.000 9.09 0.00 45.56 3.86
1352 5647 1.079819 GCTACGAGCAGCACTGGAA 60.080 57.895 0.00 0.00 41.89 3.53
1353 5648 0.460987 GCTACGAGCAGCACTGGAAT 60.461 55.000 0.00 0.00 41.89 3.01
1354 5649 1.565305 CTACGAGCAGCACTGGAATC 58.435 55.000 0.00 0.00 0.00 2.52
1357 5652 0.725686 CGAGCAGCACTGGAATCAAG 59.274 55.000 0.00 0.00 0.00 3.02
1364 5666 4.228097 CTGGAATCAAGCGCGGCG 62.228 66.667 19.62 19.62 0.00 6.46
1618 5920 0.177373 GGTACCTCATGGGGTTCGTC 59.823 60.000 25.56 11.14 40.48 4.20
1661 5963 2.204306 AAGGGGGTGGGAAGAGGG 60.204 66.667 0.00 0.00 0.00 4.30
1749 6051 8.588472 CAAAAGGGTGAGATTTTTCTTCCTTAT 58.412 33.333 0.00 0.00 33.31 1.73
1750 6052 9.822727 AAAAGGGTGAGATTTTTCTTCCTTATA 57.177 29.630 0.00 0.00 33.31 0.98
1753 6055 9.467796 AGGGTGAGATTTTTCTTCCTTATAAAG 57.532 33.333 0.00 0.00 0.00 1.85
1754 6056 9.244292 GGGTGAGATTTTTCTTCCTTATAAAGT 57.756 33.333 0.00 0.00 0.00 2.66
1923 6558 7.966246 TCAATAGCCTGTTTAGAAAACGTAA 57.034 32.000 0.00 0.00 0.00 3.18
1979 6619 9.403583 TGAAATAATTGTTCATACCTTCCCTAC 57.596 33.333 3.06 0.00 30.08 3.18
2129 6769 7.305813 TCCATACCTGTTGTACAAGAAACTA 57.694 36.000 8.98 0.00 30.62 2.24
2174 6816 4.070716 CTGTGAGGAAATCATGATAGGCC 58.929 47.826 9.04 10.57 40.92 5.19
2241 6888 2.542766 AATATGCCGTGCACGAAAAG 57.457 45.000 39.10 23.35 43.04 2.27
2257 6904 6.568653 GCACGAAAAGCCTTAATCTCTTCTTT 60.569 38.462 0.00 0.00 0.00 2.52
2273 6920 8.746052 TCTCTTCTTTGAGAATGGTTTTACAA 57.254 30.769 0.00 0.00 39.80 2.41
2366 7033 1.423584 TCTGGTTGGAGAAGAGCACA 58.576 50.000 0.00 0.00 0.00 4.57
2450 7117 4.964262 AGATATTGGGTTCACATGCCAAAT 59.036 37.500 5.92 1.24 33.32 2.32
2643 7340 3.302365 ACCGTTGATGATGCCAAAAAG 57.698 42.857 0.00 0.00 0.00 2.27
2680 7380 5.359756 AGCTTTCATCCCTTTTTGACAAAC 58.640 37.500 0.00 0.00 0.00 2.93
2692 7392 6.200854 CCTTTTTGACAAACTTGTATTGCTCC 59.799 38.462 0.00 0.00 42.43 4.70
2710 7410 1.154112 CAAATACCGCGGTTGCCAC 60.154 57.895 38.94 0.00 38.08 5.01
2987 7689 7.068103 TGTTTGGTCAGATTGTTACACAAAGAT 59.932 33.333 0.00 0.00 41.96 2.40
2988 7690 6.801539 TGGTCAGATTGTTACACAAAGATC 57.198 37.500 0.00 0.00 41.96 2.75
2989 7691 5.705441 TGGTCAGATTGTTACACAAAGATCC 59.295 40.000 0.00 0.00 41.96 3.36
2990 7692 5.123979 GGTCAGATTGTTACACAAAGATCCC 59.876 44.000 0.00 0.00 41.96 3.85
2991 7693 4.935205 TCAGATTGTTACACAAAGATCCCG 59.065 41.667 0.00 0.00 41.96 5.14
2992 7694 3.689649 AGATTGTTACACAAAGATCCCGC 59.310 43.478 0.00 0.00 41.96 6.13
2993 7695 2.552599 TGTTACACAAAGATCCCGCA 57.447 45.000 0.00 0.00 0.00 5.69
2995 7697 3.215151 TGTTACACAAAGATCCCGCAAA 58.785 40.909 0.00 0.00 0.00 3.68
2996 7698 3.632604 TGTTACACAAAGATCCCGCAAAA 59.367 39.130 0.00 0.00 0.00 2.44
2997 7699 4.098044 TGTTACACAAAGATCCCGCAAAAA 59.902 37.500 0.00 0.00 0.00 1.94
2998 7700 3.369546 ACACAAAGATCCCGCAAAAAG 57.630 42.857 0.00 0.00 0.00 2.27
2999 7701 2.955660 ACACAAAGATCCCGCAAAAAGA 59.044 40.909 0.00 0.00 0.00 2.52
3000 7702 3.383185 ACACAAAGATCCCGCAAAAAGAA 59.617 39.130 0.00 0.00 0.00 2.52
3001 7703 4.142049 ACACAAAGATCCCGCAAAAAGAAA 60.142 37.500 0.00 0.00 0.00 2.52
3002 7704 4.808364 CACAAAGATCCCGCAAAAAGAAAA 59.192 37.500 0.00 0.00 0.00 2.29
3003 7705 5.293079 CACAAAGATCCCGCAAAAAGAAAAA 59.707 36.000 0.00 0.00 0.00 1.94
3035 7737 8.062065 TGTTACACAAATCTGAACCTTTCTTT 57.938 30.769 0.00 0.00 0.00 2.52
3513 8215 1.068194 CGGACAGAGAGAGTGGTTGAC 60.068 57.143 0.00 0.00 0.00 3.18
3535 8237 2.159254 GCTCAGAGGTGACTGATGAGAC 60.159 54.545 13.04 4.12 46.56 3.36
3619 8338 0.605860 AGTAGGTCGTGAGCGTCAGT 60.606 55.000 0.00 0.00 39.49 3.41
3635 8354 3.061831 CGTCAGTTGCTAGCTTGAGATTG 59.938 47.826 17.23 5.13 0.00 2.67
3696 8415 3.953612 TCCACATTCCTACAAATCATGGC 59.046 43.478 0.00 0.00 0.00 4.40
3767 8486 8.613613 TCAAAGTGCGCAAACATATTTTATAG 57.386 30.769 14.00 0.00 0.00 1.31
3793 8512 3.983344 GTGAAGCAATTTAAGTGCCACAG 59.017 43.478 13.85 0.00 43.27 3.66
3802 8521 7.331687 GCAATTTAAGTGCCACAGATATTTGTT 59.668 33.333 6.07 0.00 35.91 2.83
3803 8522 9.853555 CAATTTAAGTGCCACAGATATTTGTTA 57.146 29.630 0.00 0.00 0.00 2.41
3809 8528 9.855021 AAGTGCCACAGATATTTGTTAAAATAC 57.145 29.630 0.00 0.00 40.25 1.89
3810 8529 9.019656 AGTGCCACAGATATTTGTTAAAATACA 57.980 29.630 0.00 0.00 40.25 2.29
3811 8530 9.801873 GTGCCACAGATATTTGTTAAAATACAT 57.198 29.630 0.00 0.00 40.25 2.29
3934 8655 4.481072 AGCCGGCCCTATATATAAGGTAG 58.519 47.826 26.15 4.06 31.70 3.18
3956 8677 8.410912 GGTAGCGGGAGTTTTATTTTATTTCAT 58.589 33.333 0.00 0.00 0.00 2.57
3989 8712 7.119846 ACAAGGGAGTTTTATTTTCTGATCGAG 59.880 37.037 0.00 0.00 0.00 4.04
4003 8726 6.951256 TCTGATCGAGTTCATTTTGTACTG 57.049 37.500 0.00 0.00 27.84 2.74
4006 8729 7.541091 TCTGATCGAGTTCATTTTGTACTGTAC 59.459 37.037 10.98 10.98 27.84 2.90
4036 8764 6.838090 AGAGAGACCAGAGAAATACATGATCA 59.162 38.462 0.00 0.00 0.00 2.92
4137 8866 8.974408 CCGTATTTAGCTTTTATAATTTTGGGC 58.026 33.333 0.00 0.00 0.00 5.36
4257 8986 9.990360 ATAAAAACCTTTTTCGACAAATACCAT 57.010 25.926 0.00 0.00 40.53 3.55
4261 8990 8.725405 AACCTTTTTCGACAAATACCATTTTT 57.275 26.923 0.00 0.00 0.00 1.94
4291 9029 4.997905 ACACGTGAACATCTTTCATGAG 57.002 40.909 25.01 7.45 38.46 2.90
4416 9158 7.184800 AAAAAGTGTGAACACCTTTTCAAAC 57.815 32.000 21.65 7.71 43.20 2.93
4425 9167 5.828299 ACACCTTTTCAAACTCGATGAAA 57.172 34.783 8.27 8.27 43.12 2.69
4436 9178 9.716507 TTCAAACTCGATGAAAACTTCTTTTAG 57.283 29.630 0.00 0.00 34.04 1.85
4437 9179 9.104965 TCAAACTCGATGAAAACTTCTTTTAGA 57.895 29.630 0.00 0.00 29.21 2.10
4438 9180 9.884465 CAAACTCGATGAAAACTTCTTTTAGAT 57.116 29.630 0.00 0.00 29.21 1.98
4464 9206 7.747155 TCATGAACATTTTTCCAAAATGCAT 57.253 28.000 17.87 12.64 40.35 3.96
4507 11317 8.697846 ATGTGAAGCAATTTAAATGTGATGAG 57.302 30.769 0.39 0.00 0.00 2.90
4508 11318 7.884257 TGTGAAGCAATTTAAATGTGATGAGA 58.116 30.769 0.39 0.00 0.00 3.27
4639 11464 1.000359 AACCTGTGCTAATGGGCCC 60.000 57.895 17.59 17.59 0.00 5.80
4641 11466 3.211963 CTGTGCTAATGGGCCCGC 61.212 66.667 19.37 15.34 0.00 6.13
4679 11504 6.992063 AGCTTGATCGAGTTCATTTTGTAT 57.008 33.333 11.71 0.00 0.00 2.29
4680 11505 7.383102 AGCTTGATCGAGTTCATTTTGTATT 57.617 32.000 11.71 0.00 0.00 1.89
4698 11523 3.806949 ATTGTAAAACAGAGAGGGCCA 57.193 42.857 6.18 0.00 0.00 5.36
4733 11558 8.768397 ACATGTAGATCATAGGGTTGTCTAAAA 58.232 33.333 0.00 0.00 34.67 1.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
75 80 5.007234 GGCACCAACTAAAAATTTGGACAAC 59.993 40.000 7.35 0.00 44.51 3.32
85 90 4.464597 ACAGAAACAGGCACCAACTAAAAA 59.535 37.500 0.00 0.00 0.00 1.94
86 91 4.020543 ACAGAAACAGGCACCAACTAAAA 58.979 39.130 0.00 0.00 0.00 1.52
97 102 5.453567 AAACCATAAGAACAGAAACAGGC 57.546 39.130 0.00 0.00 0.00 4.85
112 117 5.016173 AGGCATAGTCAAAGCAAAACCATA 58.984 37.500 0.00 0.00 0.00 2.74
123 128 3.505680 ACGCAATTGAAGGCATAGTCAAA 59.494 39.130 10.34 0.00 37.31 2.69
141 146 1.079197 ATCGCCAAGTGATGACGCA 60.079 52.632 0.00 0.00 34.60 5.24
150 155 2.086869 CAACCATCTTCATCGCCAAGT 58.913 47.619 0.00 0.00 0.00 3.16
201 206 4.165180 AGGCACCAAAACCTTACCATTTTT 59.835 37.500 0.00 0.00 29.74 1.94
227 232 2.125713 TGGCCGTCGTATGCACAG 60.126 61.111 0.00 0.00 0.00 3.66
427 432 3.253230 GGGCTCAATGTTTTCCATTTCG 58.747 45.455 0.00 0.00 41.93 3.46
428 433 4.270245 TGGGCTCAATGTTTTCCATTTC 57.730 40.909 0.00 0.00 41.93 2.17
457 462 7.168302 CACTAGTGTCTGCTGCATTAATAGTAC 59.832 40.741 15.06 0.00 0.00 2.73
462 467 4.194640 CCACTAGTGTCTGCTGCATTAAT 58.805 43.478 21.18 0.00 0.00 1.40
487 1172 1.072116 TACGGTTTCGGATTGCGACG 61.072 55.000 0.00 3.63 41.39 5.12
545 1233 0.386858 GCGGGGCGAAAGTCTTTTTC 60.387 55.000 0.00 0.00 34.89 2.29
546 1234 0.822121 AGCGGGGCGAAAGTCTTTTT 60.822 50.000 0.00 0.00 34.89 1.94
547 1235 0.822121 AAGCGGGGCGAAAGTCTTTT 60.822 50.000 0.00 0.00 34.89 2.27
548 1236 0.822121 AAAGCGGGGCGAAAGTCTTT 60.822 50.000 0.00 0.00 34.89 2.52
549 1237 0.035739 TAAAGCGGGGCGAAAGTCTT 59.964 50.000 0.00 0.00 34.89 3.01
550 1238 0.252197 ATAAAGCGGGGCGAAAGTCT 59.748 50.000 0.00 0.00 34.89 3.24
551 1239 1.944032 TATAAAGCGGGGCGAAAGTC 58.056 50.000 0.00 0.00 0.00 3.01
552 1240 2.406596 TTATAAAGCGGGGCGAAAGT 57.593 45.000 0.00 0.00 0.00 2.66
553 1241 3.982576 ATTTATAAAGCGGGGCGAAAG 57.017 42.857 3.94 0.00 0.00 2.62
554 1242 5.831702 TTTATTTATAAAGCGGGGCGAAA 57.168 34.783 3.94 0.00 0.00 3.46
555 1243 5.125097 TGTTTTATTTATAAAGCGGGGCGAA 59.875 36.000 3.94 0.00 36.59 4.70
556 1244 4.639310 TGTTTTATTTATAAAGCGGGGCGA 59.361 37.500 3.94 0.00 36.59 5.54
557 1245 4.922719 TGTTTTATTTATAAAGCGGGGCG 58.077 39.130 3.94 0.00 36.59 6.13
558 1246 6.036300 GGTTTGTTTTATTTATAAAGCGGGGC 59.964 38.462 3.94 0.00 36.59 5.80
559 1247 7.063662 GTGGTTTGTTTTATTTATAAAGCGGGG 59.936 37.037 3.94 0.00 36.59 5.73
560 1248 7.063662 GGTGGTTTGTTTTATTTATAAAGCGGG 59.936 37.037 3.94 0.00 36.59 6.13
561 1249 7.599245 TGGTGGTTTGTTTTATTTATAAAGCGG 59.401 33.333 3.94 0.00 36.59 5.52
562 1250 8.429299 GTGGTGGTTTGTTTTATTTATAAAGCG 58.571 33.333 3.94 0.00 36.59 4.68
563 1251 9.262358 TGTGGTGGTTTGTTTTATTTATAAAGC 57.738 29.630 3.94 3.09 34.13 3.51
567 1255 9.262358 GCTTTGTGGTGGTTTGTTTTATTTATA 57.738 29.630 0.00 0.00 0.00 0.98
568 1256 7.770897 TGCTTTGTGGTGGTTTGTTTTATTTAT 59.229 29.630 0.00 0.00 0.00 1.40
569 1257 7.103641 TGCTTTGTGGTGGTTTGTTTTATTTA 58.896 30.769 0.00 0.00 0.00 1.40
570 1258 5.940470 TGCTTTGTGGTGGTTTGTTTTATTT 59.060 32.000 0.00 0.00 0.00 1.40
571 1259 5.491982 TGCTTTGTGGTGGTTTGTTTTATT 58.508 33.333 0.00 0.00 0.00 1.40
572 1260 5.091261 TGCTTTGTGGTGGTTTGTTTTAT 57.909 34.783 0.00 0.00 0.00 1.40
573 1261 4.537135 TGCTTTGTGGTGGTTTGTTTTA 57.463 36.364 0.00 0.00 0.00 1.52
574 1262 3.409026 TGCTTTGTGGTGGTTTGTTTT 57.591 38.095 0.00 0.00 0.00 2.43
575 1263 3.409026 TTGCTTTGTGGTGGTTTGTTT 57.591 38.095 0.00 0.00 0.00 2.83
576 1264 3.055530 TGATTGCTTTGTGGTGGTTTGTT 60.056 39.130 0.00 0.00 0.00 2.83
577 1265 2.499289 TGATTGCTTTGTGGTGGTTTGT 59.501 40.909 0.00 0.00 0.00 2.83
578 1266 3.176552 TGATTGCTTTGTGGTGGTTTG 57.823 42.857 0.00 0.00 0.00 2.93
579 1267 4.343526 TGTATGATTGCTTTGTGGTGGTTT 59.656 37.500 0.00 0.00 0.00 3.27
580 1268 3.894427 TGTATGATTGCTTTGTGGTGGTT 59.106 39.130 0.00 0.00 0.00 3.67
581 1269 3.255642 GTGTATGATTGCTTTGTGGTGGT 59.744 43.478 0.00 0.00 0.00 4.16
582 1270 3.670359 CGTGTATGATTGCTTTGTGGTGG 60.670 47.826 0.00 0.00 0.00 4.61
583 1271 3.491356 CGTGTATGATTGCTTTGTGGTG 58.509 45.455 0.00 0.00 0.00 4.17
584 1272 2.487762 CCGTGTATGATTGCTTTGTGGT 59.512 45.455 0.00 0.00 0.00 4.16
585 1273 2.746904 TCCGTGTATGATTGCTTTGTGG 59.253 45.455 0.00 0.00 0.00 4.17
586 1274 3.436704 AGTCCGTGTATGATTGCTTTGTG 59.563 43.478 0.00 0.00 0.00 3.33
587 1275 3.674997 AGTCCGTGTATGATTGCTTTGT 58.325 40.909 0.00 0.00 0.00 2.83
588 1276 4.870426 ACTAGTCCGTGTATGATTGCTTTG 59.130 41.667 0.00 0.00 0.00 2.77
589 1277 5.086104 ACTAGTCCGTGTATGATTGCTTT 57.914 39.130 0.00 0.00 0.00 3.51
590 1278 4.737855 ACTAGTCCGTGTATGATTGCTT 57.262 40.909 0.00 0.00 0.00 3.91
591 1279 4.159693 TGAACTAGTCCGTGTATGATTGCT 59.840 41.667 0.00 0.00 0.00 3.91
592 1280 4.267928 GTGAACTAGTCCGTGTATGATTGC 59.732 45.833 0.00 0.00 0.00 3.56
593 1281 5.407502 TGTGAACTAGTCCGTGTATGATTG 58.592 41.667 0.00 0.00 0.00 2.67
594 1282 5.654603 TGTGAACTAGTCCGTGTATGATT 57.345 39.130 0.00 0.00 0.00 2.57
595 1283 5.047590 TGTTGTGAACTAGTCCGTGTATGAT 60.048 40.000 0.00 0.00 0.00 2.45
596 1284 4.278919 TGTTGTGAACTAGTCCGTGTATGA 59.721 41.667 0.00 0.00 0.00 2.15
597 1285 4.384846 GTGTTGTGAACTAGTCCGTGTATG 59.615 45.833 0.00 0.00 0.00 2.39
598 1286 4.038282 TGTGTTGTGAACTAGTCCGTGTAT 59.962 41.667 0.00 0.00 0.00 2.29
599 1287 3.380954 TGTGTTGTGAACTAGTCCGTGTA 59.619 43.478 0.00 0.00 0.00 2.90
600 1288 2.166870 TGTGTTGTGAACTAGTCCGTGT 59.833 45.455 0.00 0.00 0.00 4.49
601 1289 2.538449 GTGTGTTGTGAACTAGTCCGTG 59.462 50.000 0.00 0.00 0.00 4.94
602 1290 2.166870 TGTGTGTTGTGAACTAGTCCGT 59.833 45.455 0.00 0.00 0.00 4.69
603 1291 2.538449 GTGTGTGTTGTGAACTAGTCCG 59.462 50.000 0.00 0.00 0.00 4.79
604 1292 3.308866 GTGTGTGTGTTGTGAACTAGTCC 59.691 47.826 0.00 0.00 0.00 3.85
605 1293 3.930229 TGTGTGTGTGTTGTGAACTAGTC 59.070 43.478 0.00 0.00 0.00 2.59
606 1294 3.682858 GTGTGTGTGTGTTGTGAACTAGT 59.317 43.478 0.00 0.00 0.00 2.57
607 1295 3.063452 GGTGTGTGTGTGTTGTGAACTAG 59.937 47.826 0.00 0.00 0.00 2.57
608 1296 3.004171 GGTGTGTGTGTGTTGTGAACTA 58.996 45.455 0.00 0.00 0.00 2.24
609 1297 1.810151 GGTGTGTGTGTGTTGTGAACT 59.190 47.619 0.00 0.00 0.00 3.01
610 1298 1.135517 GGGTGTGTGTGTGTTGTGAAC 60.136 52.381 0.00 0.00 0.00 3.18
611 1299 1.169577 GGGTGTGTGTGTGTTGTGAA 58.830 50.000 0.00 0.00 0.00 3.18
612 1300 0.036875 TGGGTGTGTGTGTGTTGTGA 59.963 50.000 0.00 0.00 0.00 3.58
613 1301 0.884514 TTGGGTGTGTGTGTGTTGTG 59.115 50.000 0.00 0.00 0.00 3.33
614 1302 1.621992 TTTGGGTGTGTGTGTGTTGT 58.378 45.000 0.00 0.00 0.00 3.32
615 1303 2.732412 TTTTGGGTGTGTGTGTGTTG 57.268 45.000 0.00 0.00 0.00 3.33
616 1304 2.676463 GCATTTTGGGTGTGTGTGTGTT 60.676 45.455 0.00 0.00 0.00 3.32
617 1305 1.134848 GCATTTTGGGTGTGTGTGTGT 60.135 47.619 0.00 0.00 0.00 3.72
618 1306 1.134877 TGCATTTTGGGTGTGTGTGTG 60.135 47.619 0.00 0.00 0.00 3.82
619 1307 1.134848 GTGCATTTTGGGTGTGTGTGT 60.135 47.619 0.00 0.00 0.00 3.72
620 1308 1.569708 GTGCATTTTGGGTGTGTGTG 58.430 50.000 0.00 0.00 0.00 3.82
621 1309 0.102120 CGTGCATTTTGGGTGTGTGT 59.898 50.000 0.00 0.00 0.00 3.72
622 1310 0.383590 TCGTGCATTTTGGGTGTGTG 59.616 50.000 0.00 0.00 0.00 3.82
623 1311 0.383949 GTCGTGCATTTTGGGTGTGT 59.616 50.000 0.00 0.00 0.00 3.72
624 1312 0.383590 TGTCGTGCATTTTGGGTGTG 59.616 50.000 0.00 0.00 0.00 3.82
625 1313 1.327303 ATGTCGTGCATTTTGGGTGT 58.673 45.000 0.00 0.00 33.14 4.16
626 1314 2.746904 TCTATGTCGTGCATTTTGGGTG 59.253 45.455 0.00 0.00 38.94 4.61
627 1315 3.009723 CTCTATGTCGTGCATTTTGGGT 58.990 45.455 0.00 0.00 38.94 4.51
628 1316 3.009723 ACTCTATGTCGTGCATTTTGGG 58.990 45.455 0.00 0.00 38.94 4.12
629 1317 4.629634 TGTACTCTATGTCGTGCATTTTGG 59.370 41.667 0.00 0.00 38.94 3.28
630 1318 5.778161 TGTACTCTATGTCGTGCATTTTG 57.222 39.130 0.00 0.00 38.94 2.44
631 1319 6.649141 TCTTTGTACTCTATGTCGTGCATTTT 59.351 34.615 0.00 0.00 38.94 1.82
632 1320 6.163476 TCTTTGTACTCTATGTCGTGCATTT 58.837 36.000 0.00 0.00 38.94 2.32
633 1321 5.720202 TCTTTGTACTCTATGTCGTGCATT 58.280 37.500 0.00 0.00 38.94 3.56
634 1322 5.324784 TCTTTGTACTCTATGTCGTGCAT 57.675 39.130 0.00 1.49 41.42 3.96
635 1323 4.776795 TCTTTGTACTCTATGTCGTGCA 57.223 40.909 0.00 0.00 0.00 4.57
636 1324 6.037098 AGAATCTTTGTACTCTATGTCGTGC 58.963 40.000 0.00 0.00 0.00 5.34
637 1325 8.399425 AGTAGAATCTTTGTACTCTATGTCGTG 58.601 37.037 0.00 0.00 35.04 4.35
638 1326 8.508883 AGTAGAATCTTTGTACTCTATGTCGT 57.491 34.615 0.00 0.00 35.04 4.34
643 1331 8.862085 GCCCTTAGTAGAATCTTTGTACTCTAT 58.138 37.037 0.88 0.00 39.96 1.98
644 1332 7.837689 TGCCCTTAGTAGAATCTTTGTACTCTA 59.162 37.037 0.88 0.00 39.96 2.43
645 1333 6.668283 TGCCCTTAGTAGAATCTTTGTACTCT 59.332 38.462 0.88 0.00 39.96 3.24
646 1334 6.757478 GTGCCCTTAGTAGAATCTTTGTACTC 59.243 42.308 0.88 0.00 39.96 2.59
647 1335 6.212791 TGTGCCCTTAGTAGAATCTTTGTACT 59.787 38.462 0.00 3.08 41.86 2.73
648 1336 6.403878 TGTGCCCTTAGTAGAATCTTTGTAC 58.596 40.000 0.00 0.00 0.00 2.90
649 1337 6.212791 ACTGTGCCCTTAGTAGAATCTTTGTA 59.787 38.462 0.00 0.00 0.00 2.41
650 1338 5.013183 ACTGTGCCCTTAGTAGAATCTTTGT 59.987 40.000 0.00 0.00 0.00 2.83
651 1339 5.491982 ACTGTGCCCTTAGTAGAATCTTTG 58.508 41.667 0.00 0.00 0.00 2.77
652 1340 5.763876 ACTGTGCCCTTAGTAGAATCTTT 57.236 39.130 0.00 0.00 0.00 2.52
653 1341 5.248477 TGAACTGTGCCCTTAGTAGAATCTT 59.752 40.000 0.00 0.00 0.00 2.40
654 1342 4.777896 TGAACTGTGCCCTTAGTAGAATCT 59.222 41.667 0.00 0.00 0.00 2.40
655 1343 5.086104 TGAACTGTGCCCTTAGTAGAATC 57.914 43.478 0.00 0.00 0.00 2.52
656 1344 5.221843 TGTTGAACTGTGCCCTTAGTAGAAT 60.222 40.000 0.00 0.00 0.00 2.40
657 1345 4.101898 TGTTGAACTGTGCCCTTAGTAGAA 59.898 41.667 0.00 0.00 0.00 2.10
658 1346 3.644265 TGTTGAACTGTGCCCTTAGTAGA 59.356 43.478 0.00 0.00 0.00 2.59
659 1347 4.002906 TGTTGAACTGTGCCCTTAGTAG 57.997 45.455 0.00 0.00 0.00 2.57
660 1348 4.385825 CTTGTTGAACTGTGCCCTTAGTA 58.614 43.478 0.00 0.00 0.00 1.82
661 1349 3.214328 CTTGTTGAACTGTGCCCTTAGT 58.786 45.455 0.00 0.00 0.00 2.24
662 1350 2.030805 GCTTGTTGAACTGTGCCCTTAG 60.031 50.000 0.00 0.00 0.00 2.18
663 1351 1.953686 GCTTGTTGAACTGTGCCCTTA 59.046 47.619 0.00 0.00 0.00 2.69
664 1352 0.746659 GCTTGTTGAACTGTGCCCTT 59.253 50.000 0.00 0.00 0.00 3.95
665 1353 1.109323 GGCTTGTTGAACTGTGCCCT 61.109 55.000 13.00 0.00 34.81 5.19
666 1354 1.363807 GGCTTGTTGAACTGTGCCC 59.636 57.895 13.00 0.00 34.81 5.36
667 1355 1.363807 GGGCTTGTTGAACTGTGCC 59.636 57.895 14.77 14.77 39.61 5.01
668 1356 0.459489 TTGGGCTTGTTGAACTGTGC 59.541 50.000 0.00 0.00 0.00 4.57
669 1357 2.957491 TTTGGGCTTGTTGAACTGTG 57.043 45.000 0.00 0.00 0.00 3.66
670 1358 3.971245 TTTTTGGGCTTGTTGAACTGT 57.029 38.095 0.00 0.00 0.00 3.55
689 1377 2.439245 GCCTCCCCCGGTCTTTTT 59.561 61.111 0.00 0.00 0.00 1.94
690 1378 3.658422 GGCCTCCCCCGGTCTTTT 61.658 66.667 0.00 0.00 0.00 2.27
713 1401 3.834013 GATTAGGGGCCAGGCGCTC 62.834 68.421 26.63 16.95 41.33 5.03
714 1402 3.878667 GATTAGGGGCCAGGCGCT 61.879 66.667 26.63 20.32 41.33 5.92
715 1403 3.878667 AGATTAGGGGCCAGGCGC 61.879 66.667 20.45 20.45 40.84 6.53
716 1404 2.111878 CAGATTAGGGGCCAGGCG 59.888 66.667 4.39 0.00 0.00 5.52
717 1405 2.517919 CCAGATTAGGGGCCAGGC 59.482 66.667 4.39 1.26 0.00 4.85
718 1406 2.517919 GCCAGATTAGGGGCCAGG 59.482 66.667 4.39 0.00 44.53 4.45
723 1411 3.151906 CCCGAGCCAGATTAGGGG 58.848 66.667 0.00 0.00 38.44 4.79
724 1412 2.520536 CCCCCGAGCCAGATTAGGG 61.521 68.421 0.00 0.00 41.68 3.53
725 1413 3.151906 CCCCCGAGCCAGATTAGG 58.848 66.667 0.00 0.00 0.00 2.69
755 1443 4.918129 TTCGTCTATCGCCGCCGC 62.918 66.667 0.00 0.00 39.67 6.53
756 1444 3.022914 GTTCGTCTATCGCCGCCG 61.023 66.667 0.00 0.00 39.67 6.46
757 1445 1.517694 TTGTTCGTCTATCGCCGCC 60.518 57.895 0.00 0.00 39.67 6.13
758 1446 1.629504 GTTGTTCGTCTATCGCCGC 59.370 57.895 0.00 0.00 39.67 6.53
759 1447 0.457166 TGGTTGTTCGTCTATCGCCG 60.457 55.000 0.00 0.00 39.67 6.46
760 1448 1.859080 GATGGTTGTTCGTCTATCGCC 59.141 52.381 0.00 0.00 39.67 5.54
761 1449 1.517276 CGATGGTTGTTCGTCTATCGC 59.483 52.381 0.00 0.00 39.67 4.58
762 1450 3.036633 CTCGATGGTTGTTCGTCTATCG 58.963 50.000 0.00 0.00 38.86 2.92
763 1451 2.789893 GCTCGATGGTTGTTCGTCTATC 59.210 50.000 0.00 0.00 37.82 2.08
764 1452 2.794981 CGCTCGATGGTTGTTCGTCTAT 60.795 50.000 0.00 0.00 37.82 1.98
765 1453 1.466866 CGCTCGATGGTTGTTCGTCTA 60.467 52.381 0.00 0.00 37.82 2.59
766 1454 0.732880 CGCTCGATGGTTGTTCGTCT 60.733 55.000 0.00 0.00 37.82 4.18
767 1455 0.731514 TCGCTCGATGGTTGTTCGTC 60.732 55.000 0.00 0.00 37.82 4.20
768 1456 0.319211 TTCGCTCGATGGTTGTTCGT 60.319 50.000 0.00 0.00 37.82 3.85
769 1457 0.366871 CTTCGCTCGATGGTTGTTCG 59.633 55.000 0.00 0.00 37.94 3.95
770 1458 0.721718 CCTTCGCTCGATGGTTGTTC 59.278 55.000 13.92 0.00 35.48 3.18
771 1459 0.034896 ACCTTCGCTCGATGGTTGTT 59.965 50.000 19.85 2.58 46.35 2.83
772 1460 1.671742 ACCTTCGCTCGATGGTTGT 59.328 52.632 19.85 2.88 46.35 3.32
773 1461 4.598257 ACCTTCGCTCGATGGTTG 57.402 55.556 19.85 2.37 46.35 3.77
776 1464 2.278857 CCGACCTTCGCTCGATGG 60.279 66.667 18.73 18.73 42.88 3.51
777 1465 2.956964 GCCGACCTTCGCTCGATG 60.957 66.667 0.00 0.00 38.82 3.84
778 1466 4.554363 CGCCGACCTTCGCTCGAT 62.554 66.667 0.00 0.00 38.82 3.59
780 1468 4.771356 TTCGCCGACCTTCGCTCG 62.771 66.667 0.00 0.00 38.82 5.03
781 1469 2.814183 TTCTTCGCCGACCTTCGCTC 62.814 60.000 0.00 0.00 38.82 5.03
782 1470 2.820767 CTTCTTCGCCGACCTTCGCT 62.821 60.000 0.00 0.00 38.82 4.93
783 1471 2.431942 TTCTTCGCCGACCTTCGC 60.432 61.111 0.00 0.00 38.82 4.70
784 1472 1.805945 CCTTCTTCGCCGACCTTCG 60.806 63.158 0.00 0.00 40.07 3.79
785 1473 2.101233 GCCTTCTTCGCCGACCTTC 61.101 63.158 0.00 0.00 0.00 3.46
786 1474 2.047179 GCCTTCTTCGCCGACCTT 60.047 61.111 0.00 0.00 0.00 3.50
787 1475 4.436998 CGCCTTCTTCGCCGACCT 62.437 66.667 0.00 0.00 0.00 3.85
789 1477 4.430765 TCCGCCTTCTTCGCCGAC 62.431 66.667 0.00 0.00 0.00 4.79
790 1478 4.129737 CTCCGCCTTCTTCGCCGA 62.130 66.667 0.00 0.00 0.00 5.54
791 1479 3.432051 ATCTCCGCCTTCTTCGCCG 62.432 63.158 0.00 0.00 0.00 6.46
792 1480 1.884926 CATCTCCGCCTTCTTCGCC 60.885 63.158 0.00 0.00 0.00 5.54
793 1481 1.141881 TCATCTCCGCCTTCTTCGC 59.858 57.895 0.00 0.00 0.00 4.70
794 1482 0.867753 CGTCATCTCCGCCTTCTTCG 60.868 60.000 0.00 0.00 0.00 3.79
795 1483 0.173708 ACGTCATCTCCGCCTTCTTC 59.826 55.000 0.00 0.00 0.00 2.87
796 1484 0.173708 GACGTCATCTCCGCCTTCTT 59.826 55.000 11.55 0.00 0.00 2.52
797 1485 0.681564 AGACGTCATCTCCGCCTTCT 60.682 55.000 19.50 0.00 28.16 2.85
798 1486 1.810532 AGACGTCATCTCCGCCTTC 59.189 57.895 19.50 0.00 28.16 3.46
799 1487 4.019983 AGACGTCATCTCCGCCTT 57.980 55.556 19.50 0.00 28.16 4.35
806 1494 1.032657 CCAGGACCGAGACGTCATCT 61.033 60.000 19.50 0.00 41.91 2.90
807 1495 1.433879 CCAGGACCGAGACGTCATC 59.566 63.158 19.50 11.22 34.24 2.92
808 1496 2.052690 CCCAGGACCGAGACGTCAT 61.053 63.158 19.50 2.45 34.24 3.06
809 1497 2.675423 CCCAGGACCGAGACGTCA 60.675 66.667 19.50 0.00 34.24 4.35
810 1498 3.450115 CCCCAGGACCGAGACGTC 61.450 72.222 7.70 7.70 0.00 4.34
819 1507 4.176752 CTTAGCCGCCCCCAGGAC 62.177 72.222 0.00 0.00 33.47 3.85
831 1519 4.179579 CTTTGGCGGCCGCTTAGC 62.180 66.667 45.23 30.71 41.60 3.09
832 1520 4.179579 GCTTTGGCGGCCGCTTAG 62.180 66.667 45.23 36.03 41.60 2.18
833 1521 4.715523 AGCTTTGGCGGCCGCTTA 62.716 61.111 45.23 32.62 44.37 3.09
837 1525 4.183686 CATGAGCTTTGGCGGCCG 62.184 66.667 24.05 24.05 44.37 6.13
838 1526 3.830192 CCATGAGCTTTGGCGGCC 61.830 66.667 13.32 13.32 44.37 6.13
839 1527 2.342650 TTCCATGAGCTTTGGCGGC 61.343 57.895 0.00 0.00 44.37 6.53
840 1528 1.508088 GTTCCATGAGCTTTGGCGG 59.492 57.895 10.93 0.00 44.37 6.13
841 1529 1.508088 GGTTCCATGAGCTTTGGCG 59.492 57.895 10.93 0.00 44.37 5.69
842 1530 1.893062 GGGTTCCATGAGCTTTGGC 59.107 57.895 10.93 0.18 34.06 4.52
843 1531 0.609131 ACGGGTTCCATGAGCTTTGG 60.609 55.000 9.77 9.77 35.45 3.28
844 1532 0.804989 GACGGGTTCCATGAGCTTTG 59.195 55.000 0.00 0.00 0.00 2.77
845 1533 0.673644 CGACGGGTTCCATGAGCTTT 60.674 55.000 0.00 0.00 0.00 3.51
846 1534 1.079127 CGACGGGTTCCATGAGCTT 60.079 57.895 0.00 0.00 0.00 3.74
847 1535 2.579201 CGACGGGTTCCATGAGCT 59.421 61.111 0.00 0.00 0.00 4.09
848 1536 2.511600 CCGACGGGTTCCATGAGC 60.512 66.667 5.81 0.00 0.00 4.26
849 1537 2.511600 GCCGACGGGTTCCATGAG 60.512 66.667 17.22 0.00 34.97 2.90
850 1538 3.309436 CTGCCGACGGGTTCCATGA 62.309 63.158 17.22 0.00 34.97 3.07
851 1539 2.819595 CTGCCGACGGGTTCCATG 60.820 66.667 17.22 0.00 34.97 3.66
852 1540 2.406002 AAACTGCCGACGGGTTCCAT 62.406 55.000 17.22 0.00 34.97 3.41
853 1541 2.999739 GAAACTGCCGACGGGTTCCA 63.000 60.000 17.22 3.75 42.21 3.53
854 1542 2.281276 AAACTGCCGACGGGTTCC 60.281 61.111 17.22 0.00 34.97 3.62
855 1543 3.250986 GAAACTGCCGACGGGTTC 58.749 61.111 17.22 0.00 41.53 3.62
919 1607 4.831155 GGTTAGCCTTTAGGTTGGTCTTTT 59.169 41.667 0.00 0.00 37.57 2.27
920 1608 4.404640 GGTTAGCCTTTAGGTTGGTCTTT 58.595 43.478 0.00 0.00 37.57 2.52
925 1613 2.679930 CGAGGGTTAGCCTTTAGGTTGG 60.680 54.545 3.86 0.00 37.57 3.77
927 1615 2.263545 ACGAGGGTTAGCCTTTAGGTT 58.736 47.619 3.86 0.00 37.57 3.50
929 1617 2.629051 CAACGAGGGTTAGCCTTTAGG 58.371 52.381 3.86 0.00 33.72 2.69
930 1618 2.629051 CCAACGAGGGTTAGCCTTTAG 58.371 52.381 3.86 2.30 33.72 1.85
931 1619 1.339342 GCCAACGAGGGTTAGCCTTTA 60.339 52.381 3.86 0.00 35.15 1.85
932 1620 0.608308 GCCAACGAGGGTTAGCCTTT 60.608 55.000 3.86 0.00 35.15 3.11
933 1621 1.002502 GCCAACGAGGGTTAGCCTT 60.003 57.895 3.86 0.00 35.15 4.35
934 1622 2.669240 GCCAACGAGGGTTAGCCT 59.331 61.111 1.19 1.19 35.15 4.58
941 1629 6.059484 TCCTATAAATAAAAGCCAACGAGGG 58.941 40.000 0.00 0.00 38.09 4.30
942 1630 6.990349 TCTCCTATAAATAAAAGCCAACGAGG 59.010 38.462 0.00 0.00 41.84 4.63
944 1632 8.671028 GTTTCTCCTATAAATAAAAGCCAACGA 58.329 33.333 0.00 0.00 0.00 3.85
947 1635 9.185680 GGAGTTTCTCCTATAAATAAAAGCCAA 57.814 33.333 8.38 0.00 46.41 4.52
948 1636 8.747538 GGAGTTTCTCCTATAAATAAAAGCCA 57.252 34.615 8.38 0.00 46.41 4.75
963 1651 1.153804 GTCCTCGCGGAGTTTCTCC 60.154 63.158 6.13 5.79 46.44 3.71
964 1652 1.153804 GGTCCTCGCGGAGTTTCTC 60.154 63.158 6.13 0.00 40.84 2.87
966 1654 2.506438 CGGTCCTCGCGGAGTTTC 60.506 66.667 6.13 0.00 40.84 2.78
976 1664 1.516603 GCTCTTACACGCGGTCCTC 60.517 63.158 12.47 0.00 0.00 3.71
977 1665 2.572284 GCTCTTACACGCGGTCCT 59.428 61.111 12.47 0.00 0.00 3.85
978 1666 2.508663 GGCTCTTACACGCGGTCC 60.509 66.667 12.47 0.00 0.00 4.46
979 1667 2.879462 CGGCTCTTACACGCGGTC 60.879 66.667 12.47 0.00 0.00 4.79
981 1669 2.579787 CTCGGCTCTTACACGCGG 60.580 66.667 12.47 1.27 0.00 6.46
983 1671 2.886124 GCCTCGGCTCTTACACGC 60.886 66.667 0.00 0.00 38.26 5.34
1011 1699 3.688159 CTGGGCAGCTTGGGTTGC 61.688 66.667 0.00 0.00 46.58 4.17
1035 1723 4.452733 CACTTCGGGGGCTCGACC 62.453 72.222 3.30 0.00 39.01 4.79
1036 1724 3.358076 CTCACTTCGGGGGCTCGAC 62.358 68.421 3.30 0.00 39.01 4.20
1037 1725 3.068691 CTCACTTCGGGGGCTCGA 61.069 66.667 0.00 0.00 37.38 4.04
1038 1726 4.148825 CCTCACTTCGGGGGCTCG 62.149 72.222 0.00 0.00 0.00 5.03
1040 1728 2.203938 TTCCTCACTTCGGGGGCT 60.204 61.111 0.00 0.00 0.00 5.19
1044 1732 1.446272 GCGACTTCCTCACTTCGGG 60.446 63.158 0.00 0.00 32.04 5.14
1046 1734 1.446272 GGGCGACTTCCTCACTTCG 60.446 63.158 0.00 0.00 34.56 3.79
1130 5398 1.686110 GAGGGCGAGAGGAAAGGGA 60.686 63.158 0.00 0.00 0.00 4.20
1131 5399 2.904131 GAGGGCGAGAGGAAAGGG 59.096 66.667 0.00 0.00 0.00 3.95
1135 5403 2.697761 CGAACGAGGGCGAGAGGAA 61.698 63.158 0.00 0.00 41.64 3.36
1137 5405 4.856607 GCGAACGAGGGCGAGAGG 62.857 72.222 0.00 0.00 41.64 3.69
1147 5415 4.651008 AAACGGGAGCGCGAACGA 62.651 61.111 23.12 0.00 43.93 3.85
1151 5419 2.431942 GAAGAAACGGGAGCGCGA 60.432 61.111 12.10 0.00 0.00 5.87
1165 5433 2.022129 GGTGCTCGTGTGACGGAAG 61.022 63.158 0.00 0.00 42.81 3.46
1166 5434 2.028484 GGTGCTCGTGTGACGGAA 59.972 61.111 0.00 0.00 42.81 4.30
1167 5435 3.220658 TGGTGCTCGTGTGACGGA 61.221 61.111 0.00 0.00 42.81 4.69
1192 5464 1.396301 GCTGGAATCTGTTCGAAGCTG 59.604 52.381 0.00 0.00 39.62 4.24
1196 5468 2.688507 GAGTGCTGGAATCTGTTCGAA 58.311 47.619 0.00 0.00 35.10 3.71
1221 5495 0.106149 GCGGAGAATCGGGTTGGTAT 59.894 55.000 0.00 0.00 35.77 2.73
1222 5496 1.259142 TGCGGAGAATCGGGTTGGTA 61.259 55.000 0.00 0.00 35.77 3.25
1312 5603 0.733150 TCGTGATGAGCTCGTACCAG 59.267 55.000 8.83 1.28 35.20 4.00
1322 5613 1.333702 GCTCGTAGCTCTCGTGATGAG 60.334 57.143 14.37 7.02 46.72 2.90
1323 5614 0.658368 GCTCGTAGCTCTCGTGATGA 59.342 55.000 14.37 0.00 38.45 2.92
1324 5615 0.378610 TGCTCGTAGCTCTCGTGATG 59.621 55.000 14.37 5.35 42.97 3.07
1330 5625 0.525242 CAGTGCTGCTCGTAGCTCTC 60.525 60.000 8.29 0.62 43.42 3.20
1331 5626 1.510383 CAGTGCTGCTCGTAGCTCT 59.490 57.895 8.41 7.09 45.41 4.09
1339 5634 0.450983 GCTTGATTCCAGTGCTGCTC 59.549 55.000 0.00 0.00 0.00 4.26
1340 5635 1.303799 CGCTTGATTCCAGTGCTGCT 61.304 55.000 0.00 0.00 0.00 4.24
1343 5638 2.393768 CGCGCTTGATTCCAGTGCT 61.394 57.895 17.92 0.00 36.97 4.40
1349 5644 3.718480 GAACGCCGCGCTTGATTCC 62.718 63.158 13.88 0.00 0.00 3.01
1351 5646 3.799755 GGAACGCCGCGCTTGATT 61.800 61.111 13.88 0.00 0.00 2.57
1352 5647 4.760047 AGGAACGCCGCGCTTGAT 62.760 61.111 13.88 0.00 39.96 2.57
1374 5676 4.976925 CTATGCCTGGCTCCGCGG 62.977 72.222 22.12 22.12 0.00 6.46
1705 6007 2.660552 CCGTCGTCAAACCGCACT 60.661 61.111 0.00 0.00 0.00 4.40
1759 6061 7.177216 AATGAAATTATCCACACACACAGTGAT 59.823 33.333 7.81 0.00 42.87 3.06
1761 6063 6.680810 AATGAAATTATCCACACACACAGTG 58.319 36.000 0.00 0.00 44.75 3.66
1762 6064 6.899393 AATGAAATTATCCACACACACAGT 57.101 33.333 0.00 0.00 32.46 3.55
1763 6065 7.866898 TCAAAATGAAATTATCCACACACACAG 59.133 33.333 0.00 0.00 33.67 3.66
2068 6708 8.507249 CAAATTACTAAAGCAGCTGTAAGTTCT 58.493 33.333 16.64 0.00 33.08 3.01
2129 6769 7.144000 CAGCTCATAGTTTCTTGCTTTTTCTT 58.856 34.615 0.00 0.00 0.00 2.52
2174 6816 3.047093 CAAGCGGGAACTTTTAAAACGG 58.953 45.455 9.16 0.00 0.00 4.44
2241 6888 6.601217 ACCATTCTCAAAGAAGAGATTAAGGC 59.399 38.462 0.00 0.00 43.67 4.35
2257 6904 8.335532 AGAAATCGATTGTAAAACCATTCTCA 57.664 30.769 12.25 0.00 0.00 3.27
2271 6918 5.763444 ACACGAGTGTAAGAAATCGATTG 57.237 39.130 12.25 0.00 42.90 2.67
2618 7315 6.707440 TTTTGGCATCATCAACGGTATAAT 57.293 33.333 0.00 0.00 0.00 1.28
2620 7317 5.883115 TCTTTTTGGCATCATCAACGGTATA 59.117 36.000 0.00 0.00 0.00 1.47
2621 7318 4.704540 TCTTTTTGGCATCATCAACGGTAT 59.295 37.500 0.00 0.00 0.00 2.73
2643 7340 6.374578 GGATGAAAGCTACTTTGTTTCACTC 58.625 40.000 0.00 0.00 41.65 3.51
2680 7380 3.546020 CGCGGTATTTGGAGCAATACAAG 60.546 47.826 0.00 2.61 0.00 3.16
2692 7392 1.154112 GTGGCAACCGCGGTATTTG 60.154 57.895 34.44 27.00 39.92 2.32
2710 7410 5.482006 TGATTACCTCATCGATATGCAAGG 58.518 41.667 0.00 3.17 34.62 3.61
2821 7522 7.959733 TGACACGATATTTCAAATGTCAGTAC 58.040 34.615 7.56 5.20 41.00 2.73
2948 7650 6.005823 TCTGACCAAACAATCATCATCAAGT 58.994 36.000 0.00 0.00 0.00 3.16
3011 7713 8.406297 AGAAAGAAAGGTTCAGATTTGTGTAAC 58.594 33.333 0.00 0.00 37.35 2.50
3012 7714 8.519799 AGAAAGAAAGGTTCAGATTTGTGTAA 57.480 30.769 0.00 0.00 0.00 2.41
3013 7715 7.993183 AGAGAAAGAAAGGTTCAGATTTGTGTA 59.007 33.333 0.00 0.00 0.00 2.90
3014 7716 6.830838 AGAGAAAGAAAGGTTCAGATTTGTGT 59.169 34.615 0.00 0.00 0.00 3.72
3015 7717 7.137426 CAGAGAAAGAAAGGTTCAGATTTGTG 58.863 38.462 0.00 0.00 0.00 3.33
3016 7718 6.238869 GCAGAGAAAGAAAGGTTCAGATTTGT 60.239 38.462 0.00 0.00 0.00 2.83
3017 7719 6.016443 AGCAGAGAAAGAAAGGTTCAGATTTG 60.016 38.462 0.00 0.00 0.00 2.32
3513 8215 0.813821 TCATCAGTCACCTCTGAGCG 59.186 55.000 0.00 0.00 45.70 5.03
3535 8237 1.726791 ACGATCAAGCGCACAAACTAG 59.273 47.619 11.47 0.00 33.86 2.57
3593 8305 2.670229 CGCTCACGACCTACTGCTTTAA 60.670 50.000 0.00 0.00 43.93 1.52
3595 8307 0.388649 CGCTCACGACCTACTGCTTT 60.389 55.000 0.00 0.00 43.93 3.51
3619 8338 1.066215 TCGGCAATCTCAAGCTAGCAA 60.066 47.619 18.83 0.53 0.00 3.91
3635 8354 0.951558 AACACATCAAACCAGTCGGC 59.048 50.000 0.00 0.00 34.57 5.54
3696 8415 4.452890 AGTGTTCACGAAATTCGAACAG 57.547 40.909 22.92 8.69 43.74 3.16
3767 8486 5.572896 GTGGCACTTAAATTGCTTCACATAC 59.427 40.000 11.13 0.00 40.07 2.39
3785 8504 9.801873 ATGTATTTTAACAAATATCTGTGGCAC 57.198 29.630 11.55 11.55 37.23 5.01
3898 8617 2.761213 GGCTCATTGGCCCAAGGG 60.761 66.667 8.47 0.00 45.92 3.95
3981 8703 6.712241 ACAGTACAAAATGAACTCGATCAG 57.288 37.500 0.00 0.00 31.76 2.90
3989 8712 8.082852 TCTCTCTCTGTACAGTACAAAATGAAC 58.917 37.037 21.99 0.00 38.38 3.18
4003 8726 4.481368 TCTCTGGTCTCTCTCTCTGTAC 57.519 50.000 0.00 0.00 0.00 2.90
4006 8729 5.885352 TGTATTTCTCTGGTCTCTCTCTCTG 59.115 44.000 0.00 0.00 0.00 3.35
4036 8764 4.929819 AACCGTTTGCCAAAAGAACTAT 57.070 36.364 4.61 0.00 0.00 2.12
4104 8833 9.940166 ATTATAAAAGCTAAATACGGAAAACCG 57.060 29.630 7.12 7.12 39.31 4.44
4231 8960 9.990360 ATGGTATTTGTCGAAAAAGGTTTTTAT 57.010 25.926 6.93 0.00 40.21 1.40
4234 8963 8.725405 AAATGGTATTTGTCGAAAAAGGTTTT 57.275 26.923 6.93 0.37 0.00 2.43
4261 8990 7.382488 TGAAAGATGTTCACGTGTTTTGAAAAA 59.618 29.630 16.51 0.00 34.78 1.94
4436 9178 9.120422 GCATTTTGGAAAAATGTTCATGAAATC 57.880 29.630 20.63 0.00 39.25 2.17
4437 9179 8.630917 TGCATTTTGGAAAAATGTTCATGAAAT 58.369 25.926 20.63 3.66 39.25 2.17
4438 9180 7.993101 TGCATTTTGGAAAAATGTTCATGAAA 58.007 26.923 20.63 1.23 39.25 2.69
4439 9181 7.563888 TGCATTTTGGAAAAATGTTCATGAA 57.436 28.000 20.63 3.38 39.25 2.57
4440 9182 7.444487 TCATGCATTTTGGAAAAATGTTCATGA 59.556 29.630 25.24 25.24 40.53 3.07
4609 11434 0.890683 CACAGGTTGGCAGGATTTCC 59.109 55.000 0.00 0.00 0.00 3.13
4639 11464 7.539022 CGATCAAGCTACATTATATATAGGGCG 59.461 40.741 0.00 0.00 0.00 6.13
4648 11473 9.764363 AAATGAACTCGATCAAGCTACATTATA 57.236 29.630 0.00 0.00 32.06 0.98
4679 11504 3.137544 TCTTGGCCCTCTCTGTTTTACAA 59.862 43.478 0.00 0.00 0.00 2.41
4680 11505 2.708861 TCTTGGCCCTCTCTGTTTTACA 59.291 45.455 0.00 0.00 0.00 2.41
4698 11523 9.386122 ACCCTATGATCTACATGTATTTCTCTT 57.614 33.333 5.91 2.79 39.77 2.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.