Multiple sequence alignment - TraesCS4D01G349700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G349700 chr4D 100.000 3336 0 0 1 3336 502539217 502535882 0.000000e+00 6161.0
1 TraesCS4D01G349700 chr4D 90.262 267 19 4 1815 2074 276539628 276539894 3.190000e-90 342.0
2 TraesCS4D01G349700 chr4D 82.967 182 21 8 643 823 502544382 502544210 4.460000e-34 156.0
3 TraesCS4D01G349700 chr5A 92.083 1200 57 16 640 1810 685870877 685869687 0.000000e+00 1655.0
4 TraesCS4D01G349700 chr5A 89.875 1284 82 25 2073 3336 685869690 685868435 0.000000e+00 1607.0
5 TraesCS4D01G349700 chr5A 90.358 643 56 6 1 641 645418495 645417857 0.000000e+00 839.0
6 TraesCS4D01G349700 chr5A 87.850 642 70 6 1 640 534814585 534815220 0.000000e+00 747.0
7 TraesCS4D01G349700 chr5A 90.000 280 21 3 1807 2079 480516915 480517194 4.090000e-94 355.0
8 TraesCS4D01G349700 chr4A 91.628 645 47 2 1 639 6349565 6350208 0.000000e+00 885.0
9 TraesCS4D01G349700 chr5D 90.824 643 53 3 1 639 501423634 501424274 0.000000e+00 856.0
10 TraesCS4D01G349700 chr6A 89.231 650 52 8 1 638 10063470 10062827 0.000000e+00 797.0
11 TraesCS4D01G349700 chr6A 89.531 277 22 4 1807 2076 135268921 135269197 8.860000e-91 344.0
12 TraesCS4D01G349700 chr6A 88.339 283 23 7 1809 2082 186472426 186472707 6.900000e-87 331.0
13 TraesCS4D01G349700 chr1B 89.355 620 63 2 11 630 52639075 52638459 0.000000e+00 776.0
14 TraesCS4D01G349700 chr1B 88.710 620 67 2 11 630 52554576 52553960 0.000000e+00 754.0
15 TraesCS4D01G349700 chr1B 89.362 282 20 7 1807 2080 575871387 575871666 2.460000e-91 346.0
16 TraesCS4D01G349700 chr2B 88.474 642 61 9 1 638 482704976 482704344 0.000000e+00 763.0
17 TraesCS4D01G349700 chr2B 97.368 38 1 0 2980 3017 632173315 632173278 7.730000e-07 65.8
18 TraesCS4D01G349700 chr6D 88.522 636 62 8 1 636 341114411 341115035 0.000000e+00 760.0
19 TraesCS4D01G349700 chr3B 84.157 587 73 11 1242 1810 580220521 580221105 4.860000e-153 551.0
20 TraesCS4D01G349700 chr3B 89.855 69 4 2 993 1058 580220316 580220384 5.930000e-13 86.1
21 TraesCS4D01G349700 chr7A 90.614 277 19 3 1806 2075 188033959 188034235 8.800000e-96 361.0
22 TraesCS4D01G349700 chr7A 81.212 165 26 4 3028 3187 156116197 156116033 9.710000e-26 128.0
23 TraesCS4D01G349700 chr5B 90.647 278 16 8 1815 2083 529617533 529617257 8.800000e-96 361.0
24 TraesCS4D01G349700 chr2A 90.262 267 18 5 1816 2075 729496827 729496562 3.190000e-90 342.0
25 TraesCS4D01G349700 chr3D 88.612 281 21 7 1807 2079 504999277 504999000 6.900000e-87 331.0
26 TraesCS4D01G349700 chr7D 93.103 87 6 0 3101 3187 154188448 154188362 9.710000e-26 128.0
27 TraesCS4D01G349700 chr7B 93.103 87 6 0 3101 3187 116389465 116389379 9.710000e-26 128.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G349700 chr4D 502535882 502539217 3335 True 6161.00 6161 100.000 1 3336 1 chr4D.!!$R1 3335
1 TraesCS4D01G349700 chr5A 685868435 685870877 2442 True 1631.00 1655 90.979 640 3336 2 chr5A.!!$R2 2696
2 TraesCS4D01G349700 chr5A 645417857 645418495 638 True 839.00 839 90.358 1 641 1 chr5A.!!$R1 640
3 TraesCS4D01G349700 chr5A 534814585 534815220 635 False 747.00 747 87.850 1 640 1 chr5A.!!$F2 639
4 TraesCS4D01G349700 chr4A 6349565 6350208 643 False 885.00 885 91.628 1 639 1 chr4A.!!$F1 638
5 TraesCS4D01G349700 chr5D 501423634 501424274 640 False 856.00 856 90.824 1 639 1 chr5D.!!$F1 638
6 TraesCS4D01G349700 chr6A 10062827 10063470 643 True 797.00 797 89.231 1 638 1 chr6A.!!$R1 637
7 TraesCS4D01G349700 chr1B 52638459 52639075 616 True 776.00 776 89.355 11 630 1 chr1B.!!$R2 619
8 TraesCS4D01G349700 chr1B 52553960 52554576 616 True 754.00 754 88.710 11 630 1 chr1B.!!$R1 619
9 TraesCS4D01G349700 chr2B 482704344 482704976 632 True 763.00 763 88.474 1 638 1 chr2B.!!$R1 637
10 TraesCS4D01G349700 chr6D 341114411 341115035 624 False 760.00 760 88.522 1 636 1 chr6D.!!$F1 635
11 TraesCS4D01G349700 chr3B 580220316 580221105 789 False 318.55 551 87.006 993 1810 2 chr3B.!!$F1 817

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
392 394 1.471676 GGTGTCATGAGATGGTCGGTC 60.472 57.143 0.0 0.0 0.0 4.79 F
1152 1179 0.249868 TGCCACTCGTCAAGAAGGTG 60.250 55.000 0.0 0.0 0.0 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1814 1886 0.038744 ACAAGGTGGAGCATTGGGAG 59.961 55.0 0.0 0.0 42.57 4.30 R
2837 2925 0.036875 GGCCAAGACCAACACTAGCT 59.963 55.0 0.0 0.0 0.00 3.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 1.487976 TCTTGATGCAGAGGGATGGTC 59.512 52.381 0.00 0.00 0.00 4.02
44 45 4.148825 AGAGGGATGGTCGTGCGC 62.149 66.667 0.00 0.00 0.00 6.09
154 155 1.906824 ACCCGGTCTTGAGCTTCGA 60.907 57.895 0.00 0.00 0.00 3.71
288 290 6.127980 GGTGAAAACCTTAGATTGTAGCCTTC 60.128 42.308 0.00 0.00 0.00 3.46
357 359 1.609208 AGGCGTTGCTGTTGAAGAAT 58.391 45.000 0.00 0.00 0.00 2.40
392 394 1.471676 GGTGTCATGAGATGGTCGGTC 60.472 57.143 0.00 0.00 0.00 4.79
490 500 7.599245 ACGCATAGCTTTGGTCTTATATAACTC 59.401 37.037 6.29 0.00 0.00 3.01
492 502 9.495572 GCATAGCTTTGGTCTTATATAACTCTT 57.504 33.333 6.29 0.00 0.00 2.85
513 524 6.273825 TCTTTTATTTGCCAGCGTGTTTTTA 58.726 32.000 0.00 0.00 0.00 1.52
527 542 4.099120 GTGTTTTTATGTGTGTGCGTTGA 58.901 39.130 0.00 0.00 0.00 3.18
587 602 5.751509 GGTGTATGCTCATCGTGTTTGTATA 59.248 40.000 0.00 0.00 0.00 1.47
630 645 8.893563 TGAGTCAATAAAATCCACCCTTTATT 57.106 30.769 0.00 0.00 37.92 1.40
682 697 5.058149 TGCCTTTGCAGTAACACAATATG 57.942 39.130 0.00 0.00 44.23 1.78
685 700 5.745294 GCCTTTGCAGTAACACAATATGATG 59.255 40.000 0.00 0.00 37.47 3.07
712 727 4.095483 ACCAAATCAAGACATCGAGAATGC 59.905 41.667 0.00 0.00 39.12 3.56
719 734 2.028658 AGACATCGAGAATGCACACAGT 60.029 45.455 0.00 0.00 39.12 3.55
801 816 7.776030 TGGATCAATAATACCGGTGTTTGTTAT 59.224 33.333 22.34 10.94 0.00 1.89
880 903 6.841119 TGACATCTTGTTTATTGTTGATCGG 58.159 36.000 0.00 0.00 0.00 4.18
978 1002 8.950210 ACATTATATGCATACTGTTATCTTGGC 58.050 33.333 8.99 0.00 28.91 4.52
1079 1106 1.004918 CACCACCGTCCTCTGAACC 60.005 63.158 0.00 0.00 0.00 3.62
1152 1179 0.249868 TGCCACTCGTCAAGAAGGTG 60.250 55.000 0.00 0.00 0.00 4.00
1178 1215 3.471680 ACTCAACCTTCAACTCTTCTGC 58.528 45.455 0.00 0.00 0.00 4.26
1180 1217 1.882623 CAACCTTCAACTCTTCTGCCC 59.117 52.381 0.00 0.00 0.00 5.36
1189 1226 2.508526 ACTCTTCTGCCCAACAACATC 58.491 47.619 0.00 0.00 0.00 3.06
1195 1232 2.562298 TCTGCCCAACAACATCAATTCC 59.438 45.455 0.00 0.00 0.00 3.01
1196 1233 2.299582 CTGCCCAACAACATCAATTCCA 59.700 45.455 0.00 0.00 0.00 3.53
1197 1234 2.905085 TGCCCAACAACATCAATTCCAT 59.095 40.909 0.00 0.00 0.00 3.41
1198 1235 3.264104 GCCCAACAACATCAATTCCATG 58.736 45.455 0.00 0.00 0.00 3.66
1218 1255 2.751436 TGGATCGGCCAAGCAAGC 60.751 61.111 2.24 0.00 45.87 4.01
1219 1256 2.751436 GGATCGGCCAAGCAAGCA 60.751 61.111 2.24 0.00 36.34 3.91
1221 1258 1.669999 GGATCGGCCAAGCAAGCATT 61.670 55.000 2.24 0.00 36.34 3.56
1223 1260 1.405105 GATCGGCCAAGCAAGCATTAA 59.595 47.619 2.24 0.00 0.00 1.40
1224 1261 0.525761 TCGGCCAAGCAAGCATTAAC 59.474 50.000 2.24 0.00 0.00 2.01
1225 1262 0.458370 CGGCCAAGCAAGCATTAACC 60.458 55.000 2.24 0.00 0.00 2.85
1226 1263 0.607620 GGCCAAGCAAGCATTAACCA 59.392 50.000 0.00 0.00 0.00 3.67
1227 1264 1.672737 GGCCAAGCAAGCATTAACCAC 60.673 52.381 0.00 0.00 0.00 4.16
1228 1265 1.000731 GCCAAGCAAGCATTAACCACA 59.999 47.619 0.00 0.00 0.00 4.17
1229 1266 2.354003 GCCAAGCAAGCATTAACCACAT 60.354 45.455 0.00 0.00 0.00 3.21
1230 1267 3.119173 GCCAAGCAAGCATTAACCACATA 60.119 43.478 0.00 0.00 0.00 2.29
1231 1268 4.675510 CCAAGCAAGCATTAACCACATAG 58.324 43.478 0.00 0.00 0.00 2.23
1232 1269 4.440525 CCAAGCAAGCATTAACCACATAGG 60.441 45.833 0.00 0.00 45.67 2.57
1238 1275 4.672899 AGCATTAACCACATAGGGTGTTT 58.327 39.130 0.00 0.00 46.44 2.83
1239 1276 4.705023 AGCATTAACCACATAGGGTGTTTC 59.295 41.667 0.00 0.00 46.44 2.78
1240 1277 4.142249 GCATTAACCACATAGGGTGTTTCC 60.142 45.833 0.00 0.00 46.44 3.13
1324 1361 2.587247 ATGGACGAGCAGCACCACT 61.587 57.895 0.00 0.00 35.19 4.00
1485 1522 1.272480 GCCCACCTTGTCCCTTACATT 60.272 52.381 0.00 0.00 38.10 2.71
1487 1524 2.225017 CCCACCTTGTCCCTTACATTGT 60.225 50.000 0.00 0.00 38.10 2.71
1500 1537 2.669569 ATTGTCGCGCAGGTGCTT 60.670 55.556 8.75 0.00 39.32 3.91
1578 1615 3.319198 ACCACCATCCCGAGCGTT 61.319 61.111 0.00 0.00 0.00 4.84
1672 1709 2.102588 ACGGACCCTCATGCAGTAATAC 59.897 50.000 0.00 0.00 0.00 1.89
1810 1882 0.393077 ATTCTCATCGCGGGGTAAGG 59.607 55.000 6.13 0.00 0.00 2.69
1811 1883 0.974010 TTCTCATCGCGGGGTAAGGT 60.974 55.000 6.13 0.00 0.00 3.50
1812 1884 1.067582 CTCATCGCGGGGTAAGGTC 59.932 63.158 6.13 0.00 0.00 3.85
1813 1885 1.380785 TCATCGCGGGGTAAGGTCT 60.381 57.895 6.13 0.00 0.00 3.85
1814 1886 1.067582 CATCGCGGGGTAAGGTCTC 59.932 63.158 6.13 0.00 0.00 3.36
1815 1887 1.076192 ATCGCGGGGTAAGGTCTCT 60.076 57.895 6.13 0.00 0.00 3.10
1816 1888 1.108132 ATCGCGGGGTAAGGTCTCTC 61.108 60.000 6.13 0.00 0.00 3.20
1817 1889 2.783288 CGCGGGGTAAGGTCTCTCC 61.783 68.421 0.00 0.00 0.00 3.71
1818 1890 2.433146 GCGGGGTAAGGTCTCTCCC 61.433 68.421 0.00 0.00 39.22 4.30
1819 1891 1.001248 CGGGGTAAGGTCTCTCCCA 59.999 63.158 10.79 0.00 41.51 4.37
1820 1892 0.616679 CGGGGTAAGGTCTCTCCCAA 60.617 60.000 10.79 0.00 41.51 4.12
1821 1893 1.894699 GGGGTAAGGTCTCTCCCAAT 58.105 55.000 10.79 0.00 41.51 3.16
1822 1894 1.490910 GGGGTAAGGTCTCTCCCAATG 59.509 57.143 10.79 0.00 41.51 2.82
1823 1895 1.134068 GGGTAAGGTCTCTCCCAATGC 60.134 57.143 0.00 0.00 39.68 3.56
1824 1896 1.840635 GGTAAGGTCTCTCCCAATGCT 59.159 52.381 0.00 0.00 36.75 3.79
1825 1897 2.158885 GGTAAGGTCTCTCCCAATGCTC 60.159 54.545 0.00 0.00 36.75 4.26
1826 1898 0.915364 AAGGTCTCTCCCAATGCTCC 59.085 55.000 0.00 0.00 36.75 4.70
1827 1899 0.252881 AGGTCTCTCCCAATGCTCCA 60.253 55.000 0.00 0.00 36.75 3.86
1828 1900 0.107459 GGTCTCTCCCAATGCTCCAC 60.107 60.000 0.00 0.00 0.00 4.02
1829 1901 0.107459 GTCTCTCCCAATGCTCCACC 60.107 60.000 0.00 0.00 0.00 4.61
1830 1902 0.252881 TCTCTCCCAATGCTCCACCT 60.253 55.000 0.00 0.00 0.00 4.00
1831 1903 0.622665 CTCTCCCAATGCTCCACCTT 59.377 55.000 0.00 0.00 0.00 3.50
1832 1904 0.329261 TCTCCCAATGCTCCACCTTG 59.671 55.000 0.00 0.00 0.00 3.61
1833 1905 0.038744 CTCCCAATGCTCCACCTTGT 59.961 55.000 0.00 0.00 0.00 3.16
1834 1906 1.281867 CTCCCAATGCTCCACCTTGTA 59.718 52.381 0.00 0.00 0.00 2.41
1835 1907 1.004277 TCCCAATGCTCCACCTTGTAC 59.996 52.381 0.00 0.00 0.00 2.90
1836 1908 1.271871 CCCAATGCTCCACCTTGTACA 60.272 52.381 0.00 0.00 0.00 2.90
1837 1909 2.086869 CCAATGCTCCACCTTGTACAG 58.913 52.381 0.00 0.00 0.00 2.74
1848 1920 3.418684 CCTTGTACAGGTGCTAAGGTT 57.581 47.619 4.10 0.00 37.99 3.50
1849 1921 3.074412 CCTTGTACAGGTGCTAAGGTTG 58.926 50.000 4.10 0.00 37.99 3.77
1850 1922 2.178912 TGTACAGGTGCTAAGGTTGC 57.821 50.000 0.00 0.00 0.00 4.17
1851 1923 1.271163 TGTACAGGTGCTAAGGTTGCC 60.271 52.381 0.00 0.00 0.00 4.52
1852 1924 1.060729 TACAGGTGCTAAGGTTGCCA 58.939 50.000 0.00 0.00 0.00 4.92
1853 1925 0.184933 ACAGGTGCTAAGGTTGCCAA 59.815 50.000 0.00 0.00 0.00 4.52
1854 1926 0.598065 CAGGTGCTAAGGTTGCCAAC 59.402 55.000 0.00 0.00 0.00 3.77
1855 1927 0.478507 AGGTGCTAAGGTTGCCAACT 59.521 50.000 7.62 0.00 0.00 3.16
1856 1928 1.702957 AGGTGCTAAGGTTGCCAACTA 59.297 47.619 7.62 0.00 0.00 2.24
1857 1929 2.107552 AGGTGCTAAGGTTGCCAACTAA 59.892 45.455 7.62 0.00 0.00 2.24
1858 1930 2.488153 GGTGCTAAGGTTGCCAACTAAG 59.512 50.000 7.62 4.07 0.00 2.18
1859 1931 2.095212 GTGCTAAGGTTGCCAACTAAGC 60.095 50.000 16.86 16.86 33.82 3.09
1860 1932 2.159382 GCTAAGGTTGCCAACTAAGCA 58.841 47.619 18.04 0.00 38.81 3.91
1885 1957 7.636150 AAAAATCTGATGTAGCATGCTAGTT 57.364 32.000 27.54 17.36 0.00 2.24
1886 1958 8.737168 AAAAATCTGATGTAGCATGCTAGTTA 57.263 30.769 27.54 16.74 0.00 2.24
1887 1959 8.737168 AAAATCTGATGTAGCATGCTAGTTAA 57.263 30.769 27.54 13.78 0.00 2.01
1888 1960 7.959689 AATCTGATGTAGCATGCTAGTTAAG 57.040 36.000 27.54 20.64 0.00 1.85
1889 1961 6.715347 TCTGATGTAGCATGCTAGTTAAGA 57.285 37.500 27.54 22.32 0.00 2.10
1890 1962 7.112452 TCTGATGTAGCATGCTAGTTAAGAA 57.888 36.000 27.54 2.67 0.00 2.52
1891 1963 7.205992 TCTGATGTAGCATGCTAGTTAAGAAG 58.794 38.462 27.54 17.05 0.00 2.85
1892 1964 7.068716 TCTGATGTAGCATGCTAGTTAAGAAGA 59.931 37.037 27.54 18.78 0.00 2.87
1893 1965 7.205992 TGATGTAGCATGCTAGTTAAGAAGAG 58.794 38.462 27.54 0.00 0.00 2.85
1894 1966 6.775594 TGTAGCATGCTAGTTAAGAAGAGA 57.224 37.500 27.54 0.19 0.00 3.10
1895 1967 6.800543 TGTAGCATGCTAGTTAAGAAGAGAG 58.199 40.000 27.54 0.00 0.00 3.20
1896 1968 6.603599 TGTAGCATGCTAGTTAAGAAGAGAGA 59.396 38.462 27.54 0.00 0.00 3.10
1897 1969 6.537453 AGCATGCTAGTTAAGAAGAGAGAA 57.463 37.500 21.21 0.00 0.00 2.87
1898 1970 7.123355 AGCATGCTAGTTAAGAAGAGAGAAT 57.877 36.000 21.21 0.00 0.00 2.40
1899 1971 8.243961 AGCATGCTAGTTAAGAAGAGAGAATA 57.756 34.615 21.21 0.00 0.00 1.75
1900 1972 8.359642 AGCATGCTAGTTAAGAAGAGAGAATAG 58.640 37.037 21.21 0.00 0.00 1.73
1901 1973 8.141268 GCATGCTAGTTAAGAAGAGAGAATAGT 58.859 37.037 11.37 0.00 0.00 2.12
1911 1983 7.775053 AGAAGAGAGAATAGTATGATGACCC 57.225 40.000 0.00 0.00 0.00 4.46
1912 1984 7.534852 AGAAGAGAGAATAGTATGATGACCCT 58.465 38.462 0.00 0.00 0.00 4.34
1913 1985 8.674173 AGAAGAGAGAATAGTATGATGACCCTA 58.326 37.037 0.00 0.00 0.00 3.53
1914 1986 8.877864 AAGAGAGAATAGTATGATGACCCTAG 57.122 38.462 0.00 0.00 0.00 3.02
1915 1987 7.410174 AGAGAGAATAGTATGATGACCCTAGG 58.590 42.308 0.06 0.06 0.00 3.02
1916 1988 7.240828 AGAGAGAATAGTATGATGACCCTAGGA 59.759 40.741 11.48 0.00 0.00 2.94
1917 1989 7.770662 AGAGAATAGTATGATGACCCTAGGAA 58.229 38.462 11.48 0.00 0.00 3.36
1918 1990 8.235230 AGAGAATAGTATGATGACCCTAGGAAA 58.765 37.037 11.48 0.00 0.00 3.13
1919 1991 8.798975 AGAATAGTATGATGACCCTAGGAAAA 57.201 34.615 11.48 0.00 0.00 2.29
1920 1992 9.225682 AGAATAGTATGATGACCCTAGGAAAAA 57.774 33.333 11.48 0.00 0.00 1.94
1944 2016 2.933495 TGCTAAGCACGTGTACCTAG 57.067 50.000 18.38 12.91 31.71 3.02
1945 2017 1.475280 TGCTAAGCACGTGTACCTAGG 59.525 52.381 18.38 7.41 31.71 3.02
1946 2018 1.475682 GCTAAGCACGTGTACCTAGGT 59.524 52.381 20.57 20.57 0.00 3.08
1947 2019 2.734492 GCTAAGCACGTGTACCTAGGTG 60.734 54.545 25.33 10.11 38.94 4.00
1948 2020 0.606604 AAGCACGTGTACCTAGGTGG 59.393 55.000 25.33 12.86 42.93 4.61
1949 2021 0.251474 AGCACGTGTACCTAGGTGGA 60.251 55.000 25.33 7.67 39.71 4.02
1950 2022 0.604578 GCACGTGTACCTAGGTGGAA 59.395 55.000 25.33 6.80 39.71 3.53
1951 2023 1.403780 GCACGTGTACCTAGGTGGAAG 60.404 57.143 25.33 14.41 39.71 3.46
1952 2024 0.893447 ACGTGTACCTAGGTGGAAGC 59.107 55.000 25.33 9.57 39.71 3.86
1953 2025 0.892755 CGTGTACCTAGGTGGAAGCA 59.107 55.000 25.33 11.93 39.71 3.91
1954 2026 1.403780 CGTGTACCTAGGTGGAAGCAC 60.404 57.143 25.33 20.40 39.71 4.40
1955 2027 1.621814 GTGTACCTAGGTGGAAGCACA 59.378 52.381 25.33 16.24 39.71 4.57
1956 2028 2.038033 GTGTACCTAGGTGGAAGCACAA 59.962 50.000 25.33 0.00 39.71 3.33
1957 2029 2.910319 TGTACCTAGGTGGAAGCACAAT 59.090 45.455 25.33 0.00 39.71 2.71
1958 2030 3.329520 TGTACCTAGGTGGAAGCACAATT 59.670 43.478 25.33 0.00 39.71 2.32
1959 2031 3.073274 ACCTAGGTGGAAGCACAATTC 57.927 47.619 15.42 0.00 39.71 2.17
1960 2032 2.644798 ACCTAGGTGGAAGCACAATTCT 59.355 45.455 15.42 0.00 39.71 2.40
1961 2033 3.012518 CCTAGGTGGAAGCACAATTCTG 58.987 50.000 0.00 0.00 38.35 3.02
1962 2034 2.957402 AGGTGGAAGCACAATTCTGA 57.043 45.000 0.00 0.00 36.26 3.27
1963 2035 2.787994 AGGTGGAAGCACAATTCTGAG 58.212 47.619 0.00 0.00 36.26 3.35
1964 2036 2.107204 AGGTGGAAGCACAATTCTGAGT 59.893 45.455 0.00 0.00 36.26 3.41
1965 2037 2.485814 GGTGGAAGCACAATTCTGAGTC 59.514 50.000 0.00 0.00 0.00 3.36
1966 2038 3.406764 GTGGAAGCACAATTCTGAGTCT 58.593 45.455 0.00 0.00 0.00 3.24
1967 2039 4.563580 GGTGGAAGCACAATTCTGAGTCTA 60.564 45.833 0.00 0.00 0.00 2.59
1968 2040 5.181748 GTGGAAGCACAATTCTGAGTCTAT 58.818 41.667 0.00 0.00 0.00 1.98
1969 2041 6.341316 GTGGAAGCACAATTCTGAGTCTATA 58.659 40.000 0.00 0.00 0.00 1.31
1970 2042 6.818644 GTGGAAGCACAATTCTGAGTCTATAA 59.181 38.462 0.00 0.00 0.00 0.98
1971 2043 6.818644 TGGAAGCACAATTCTGAGTCTATAAC 59.181 38.462 0.00 0.00 0.00 1.89
1972 2044 7.044798 GGAAGCACAATTCTGAGTCTATAACT 58.955 38.462 0.00 0.00 42.42 2.24
1973 2045 8.198109 GGAAGCACAATTCTGAGTCTATAACTA 58.802 37.037 0.00 0.00 38.74 2.24
1974 2046 9.587772 GAAGCACAATTCTGAGTCTATAACTAA 57.412 33.333 0.00 0.00 38.74 2.24
1994 2066 8.862550 AACTAATTAAATGCATGAAGCTTAGC 57.137 30.769 0.00 4.91 45.94 3.09
1995 2067 7.999679 ACTAATTAAATGCATGAAGCTTAGCA 58.000 30.769 19.08 19.08 45.94 3.49
1996 2068 7.917505 ACTAATTAAATGCATGAAGCTTAGCAC 59.082 33.333 19.15 0.43 45.94 4.40
1997 2069 3.515330 AAATGCATGAAGCTTAGCACC 57.485 42.857 19.15 0.00 45.94 5.01
1998 2070 2.431954 ATGCATGAAGCTTAGCACCT 57.568 45.000 19.15 5.79 45.94 4.00
1999 2071 2.205022 TGCATGAAGCTTAGCACCTT 57.795 45.000 14.52 0.00 45.94 3.50
2000 2072 2.517959 TGCATGAAGCTTAGCACCTTT 58.482 42.857 14.52 0.00 45.94 3.11
2001 2073 2.229543 TGCATGAAGCTTAGCACCTTTG 59.770 45.455 14.52 0.00 45.94 2.77
2002 2074 2.987889 GCATGAAGCTTAGCACCTTTGC 60.988 50.000 7.07 5.27 44.58 3.68
2003 2075 5.467125 GCATGAAGCTTAGCACCTTTGCA 62.467 47.826 7.07 0.00 45.82 4.08
2004 2076 6.698999 GCATGAAGCTTAGCACCTTTGCAT 62.699 45.833 7.07 0.00 45.82 3.96
2014 2086 3.837213 CACCTTTGCATTGTGGACTAG 57.163 47.619 0.00 0.00 0.00 2.57
2015 2087 3.411446 CACCTTTGCATTGTGGACTAGA 58.589 45.455 0.00 0.00 0.00 2.43
2016 2088 3.438087 CACCTTTGCATTGTGGACTAGAG 59.562 47.826 0.00 0.00 0.00 2.43
2017 2089 3.073062 ACCTTTGCATTGTGGACTAGAGT 59.927 43.478 0.00 0.00 0.00 3.24
2018 2090 4.074970 CCTTTGCATTGTGGACTAGAGTT 58.925 43.478 0.00 0.00 0.00 3.01
2019 2091 4.083110 CCTTTGCATTGTGGACTAGAGTTG 60.083 45.833 0.00 0.00 0.00 3.16
2020 2092 4.350368 TTGCATTGTGGACTAGAGTTGA 57.650 40.909 0.00 0.00 0.00 3.18
2021 2093 3.664107 TGCATTGTGGACTAGAGTTGAC 58.336 45.455 0.00 0.00 0.00 3.18
2022 2094 3.070878 TGCATTGTGGACTAGAGTTGACA 59.929 43.478 0.00 0.00 0.00 3.58
2023 2095 4.256920 GCATTGTGGACTAGAGTTGACAT 58.743 43.478 0.00 0.00 0.00 3.06
2024 2096 4.697352 GCATTGTGGACTAGAGTTGACATT 59.303 41.667 0.00 0.00 0.00 2.71
2025 2097 5.182001 GCATTGTGGACTAGAGTTGACATTT 59.818 40.000 0.00 0.00 0.00 2.32
2026 2098 6.371548 GCATTGTGGACTAGAGTTGACATTTA 59.628 38.462 0.00 0.00 0.00 1.40
2027 2099 7.094805 GCATTGTGGACTAGAGTTGACATTTAA 60.095 37.037 0.00 0.00 0.00 1.52
2028 2100 8.950210 CATTGTGGACTAGAGTTGACATTTAAT 58.050 33.333 0.00 0.00 0.00 1.40
2052 2124 9.930693 AATATACTTAGCACCTTATCTAAGCAC 57.069 33.333 8.44 0.00 43.27 4.40
2053 2125 5.024785 ACTTAGCACCTTATCTAAGCACC 57.975 43.478 8.44 0.00 43.27 5.01
2054 2126 4.717280 ACTTAGCACCTTATCTAAGCACCT 59.283 41.667 8.44 0.00 43.27 4.00
2055 2127 5.189934 ACTTAGCACCTTATCTAAGCACCTT 59.810 40.000 8.44 0.00 43.27 3.50
2056 2128 4.576330 AGCACCTTATCTAAGCACCTTT 57.424 40.909 0.00 0.00 32.02 3.11
2057 2129 4.265073 AGCACCTTATCTAAGCACCTTTG 58.735 43.478 0.00 0.00 32.02 2.77
2069 2141 1.180029 CACCTTTGCATTGGAGGAGG 58.820 55.000 11.80 7.74 34.61 4.30
2070 2142 0.779997 ACCTTTGCATTGGAGGAGGT 59.220 50.000 11.80 8.77 34.61 3.85
2071 2143 1.272147 ACCTTTGCATTGGAGGAGGTC 60.272 52.381 11.80 0.00 32.25 3.85
2072 2144 1.005215 CCTTTGCATTGGAGGAGGTCT 59.995 52.381 0.00 0.00 32.11 3.85
2073 2145 2.239654 CCTTTGCATTGGAGGAGGTCTA 59.760 50.000 0.00 0.00 32.11 2.59
2074 2146 3.308402 CCTTTGCATTGGAGGAGGTCTAA 60.308 47.826 0.00 0.00 32.11 2.10
2075 2147 3.634397 TTGCATTGGAGGAGGTCTAAG 57.366 47.619 0.00 0.00 0.00 2.18
2093 2165 7.283580 AGGTCTAAGTAGCTAGAATGTGTAGTG 59.716 40.741 0.00 0.00 29.74 2.74
2094 2166 6.913673 GTCTAAGTAGCTAGAATGTGTAGTGC 59.086 42.308 0.00 0.00 29.74 4.40
2101 2176 5.360999 AGCTAGAATGTGTAGTGCTACATGA 59.639 40.000 14.19 6.05 46.36 3.07
2194 2269 3.267483 GAAAACTATAAGCAGGCCGTCA 58.733 45.455 0.00 0.00 0.00 4.35
2212 2287 4.375272 CGTCAACAGGAGCATCTATGAAT 58.625 43.478 0.00 0.00 33.73 2.57
2224 2299 1.679153 TCTATGAATCCAGCGCGTACA 59.321 47.619 8.43 0.00 0.00 2.90
2233 2308 1.004320 AGCGCGTACAATTGGACCA 60.004 52.632 15.31 0.00 0.00 4.02
2245 2320 2.283101 GGACCAGCCATTGCCACA 60.283 61.111 0.00 0.00 38.69 4.17
2350 2425 5.196341 AGTTGTAGTCAGAAACATCGACA 57.804 39.130 0.00 0.00 31.92 4.35
2352 2427 5.462398 AGTTGTAGTCAGAAACATCGACAAC 59.538 40.000 8.67 8.67 43.53 3.32
2353 2428 4.304110 TGTAGTCAGAAACATCGACAACC 58.696 43.478 0.00 0.00 31.92 3.77
2354 2429 3.753294 AGTCAGAAACATCGACAACCT 57.247 42.857 0.00 0.00 31.92 3.50
2360 2435 6.202188 GTCAGAAACATCGACAACCTAGAAAA 59.798 38.462 0.00 0.00 0.00 2.29
2361 2436 6.764085 TCAGAAACATCGACAACCTAGAAAAA 59.236 34.615 0.00 0.00 0.00 1.94
2389 2464 9.620660 AAAAACACAGTTGTAGAGTGTAAAAAG 57.379 29.630 0.00 0.00 44.99 2.27
2390 2465 6.920569 ACACAGTTGTAGAGTGTAAAAAGG 57.079 37.500 0.00 0.00 44.02 3.11
2416 2491 4.563140 AAGAAAAGGGATTAGGTGCGTA 57.437 40.909 0.00 0.00 0.00 4.42
2439 2518 9.162793 CGTATTGCTGAAGTTTTGATTGATATC 57.837 33.333 0.00 0.00 0.00 1.63
2496 2575 6.851609 TCATATTTTGATGAAAACAGGTCCG 58.148 36.000 0.00 0.00 33.86 4.79
2499 2578 1.890876 TGATGAAAACAGGTCCGTGG 58.109 50.000 0.00 0.00 0.00 4.94
2502 2581 0.547075 TGAAAACAGGTCCGTGGGAA 59.453 50.000 0.00 0.00 31.38 3.97
2540 2623 9.965824 ACTTTCAATAGAATTTTACCAACAGTG 57.034 29.630 0.00 0.00 32.89 3.66
2542 2625 9.959749 TTTCAATAGAATTTTACCAACAGTGAC 57.040 29.630 0.00 0.00 32.89 3.67
2560 2644 0.397254 ACTGTCCGGTGGCTAGCTAT 60.397 55.000 15.72 0.00 0.00 2.97
2577 2661 5.657826 AGCTATCACTATCAGCCATGTAG 57.342 43.478 0.00 0.00 35.88 2.74
2578 2662 5.328565 AGCTATCACTATCAGCCATGTAGA 58.671 41.667 0.00 0.00 35.88 2.59
2579 2663 5.957168 AGCTATCACTATCAGCCATGTAGAT 59.043 40.000 0.00 0.00 35.88 1.98
2580 2664 6.041511 GCTATCACTATCAGCCATGTAGATG 58.958 44.000 0.00 0.00 0.00 2.90
2581 2665 4.263018 TCACTATCAGCCATGTAGATGC 57.737 45.455 0.00 0.00 0.00 3.91
2582 2666 3.642848 TCACTATCAGCCATGTAGATGCA 59.357 43.478 0.00 0.00 0.00 3.96
2586 2670 4.894201 GCCATGTAGATGCAGGCT 57.106 55.556 3.76 0.56 42.01 4.58
2599 2683 5.198965 AGATGCAGGCTTAAATCTGACAAT 58.801 37.500 8.42 0.64 33.11 2.71
2607 2691 6.260936 AGGCTTAAATCTGACAATTGGATACG 59.739 38.462 10.83 0.00 42.51 3.06
2610 2694 8.181573 GCTTAAATCTGACAATTGGATACGAAA 58.818 33.333 10.83 0.00 42.51 3.46
2621 2709 8.939929 ACAATTGGATACGAAATAGCATATCTG 58.060 33.333 10.83 0.00 42.51 2.90
2626 2714 7.931407 TGGATACGAAATAGCATATCTGTTGTT 59.069 33.333 0.00 0.00 42.51 2.83
2682 2770 5.234116 GCATTTTGTACAGTTTTGTCTTGGG 59.766 40.000 0.00 0.00 38.76 4.12
2695 2783 5.930837 TTGTCTTGGGAATTGAACAGTTT 57.069 34.783 0.00 0.00 0.00 2.66
2703 2791 4.448732 GGGAATTGAACAGTTTTGCACATC 59.551 41.667 0.00 0.00 0.00 3.06
2750 2838 1.438651 TCAAATTTCCTCGGCTCACG 58.561 50.000 0.00 0.00 46.11 4.35
2767 2855 2.745281 TCACGGGTATTTTGCTAGTTGC 59.255 45.455 0.00 0.00 43.25 4.17
2792 2880 9.023967 GCATAAAATCTTGGTGTGAATACATTC 57.976 33.333 0.00 0.00 39.39 2.67
2797 2885 5.487433 TCTTGGTGTGAATACATTCGACAT 58.513 37.500 9.09 0.00 39.39 3.06
2813 2901 9.725019 ACATTCGACATGGATAATTACACATAT 57.275 29.630 0.00 0.00 0.00 1.78
2818 2906 8.595533 CGACATGGATAATTACACATATGTAGC 58.404 37.037 8.32 0.00 42.29 3.58
2839 2927 9.745880 TGTAGCTAACAGACATAAATTAGTAGC 57.254 33.333 0.00 0.00 33.01 3.58
2855 2943 2.028020 AGTAGCTAGTGTTGGTCTTGGC 60.028 50.000 0.00 0.00 0.00 4.52
2858 2946 1.545651 GCTAGTGTTGGTCTTGGCCTT 60.546 52.381 3.32 0.00 0.00 4.35
2867 2955 1.066071 GGTCTTGGCCTTCAGTAGTCC 60.066 57.143 3.32 0.00 0.00 3.85
2894 2982 5.409643 AAATGCTGTTATTCGATCCTTCG 57.590 39.130 0.00 0.00 46.87 3.79
2897 2985 4.607955 TGCTGTTATTCGATCCTTCGTAG 58.392 43.478 0.00 0.00 45.65 3.51
2902 2990 6.147581 TGTTATTCGATCCTTCGTAGTATGC 58.852 40.000 0.00 0.00 45.65 3.14
2907 2995 3.119919 CGATCCTTCGTAGTATGCCCTAC 60.120 52.174 0.00 0.00 40.53 3.18
2910 2998 2.288273 CCTTCGTAGTATGCCCTACTGC 60.288 54.545 6.37 4.48 40.94 4.40
2919 3007 0.621571 TGCCCTACTGCCTCAGGAAT 60.622 55.000 0.00 0.00 35.51 3.01
2920 3008 0.548510 GCCCTACTGCCTCAGGAATT 59.451 55.000 0.00 0.00 35.51 2.17
2987 3076 1.841919 GAAAAGGAGGATAACCCCGGA 59.158 52.381 0.73 0.00 36.73 5.14
2990 3079 0.342313 AGGAGGATAACCCCGGACTT 59.658 55.000 0.73 0.00 36.73 3.01
3035 3124 7.697691 AGCCATATTTATTATGTTATGCTCGC 58.302 34.615 0.00 0.00 36.69 5.03
3066 3155 3.007581 GGCTTCCCCTCCTAGTCAA 57.992 57.895 0.00 0.00 0.00 3.18
3110 3199 3.556004 GGATAGTGGCATAGGCTCTTGAC 60.556 52.174 0.00 0.00 40.87 3.18
3155 3244 1.604604 TAAATAATGGAGCTGCCGCC 58.395 50.000 1.53 0.00 40.66 6.13
3168 3257 0.758734 TGCCGCCTTAGATGCAGTAT 59.241 50.000 0.00 0.00 0.00 2.12
3219 3308 6.780457 ATGCATACAAAATAGCCTGTTTCT 57.220 33.333 0.00 0.00 0.00 2.52
3229 3318 6.461110 AATAGCCTGTTTCTGGAATTCATG 57.539 37.500 7.93 0.00 0.00 3.07
3295 3384 4.832248 ACGCTCAGAATCACCAAAGAATA 58.168 39.130 0.00 0.00 0.00 1.75
3322 3411 8.109634 ACACACTTTGAGGAGGAAAATATACAT 58.890 33.333 0.00 0.00 0.00 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
154 155 2.586648 CCAAACCTAGGCTTTCACCT 57.413 50.000 9.30 0.00 44.31 4.00
238 239 1.065199 AGAATCAGCCCGAGCATTTGA 60.065 47.619 0.00 0.00 43.56 2.69
239 240 1.386533 AGAATCAGCCCGAGCATTTG 58.613 50.000 0.00 0.00 43.56 2.32
288 290 4.873129 CACCGGATCGAGCCACCG 62.873 72.222 21.44 16.70 45.24 4.94
357 359 1.176619 ACACCACACGGACGATGAGA 61.177 55.000 0.00 0.00 35.59 3.27
486 496 3.317993 ACACGCTGGCAAATAAAAGAGTT 59.682 39.130 0.00 0.00 0.00 3.01
490 500 5.402464 AAAAACACGCTGGCAAATAAAAG 57.598 34.783 0.00 0.00 0.00 2.27
492 502 5.986135 ACATAAAAACACGCTGGCAAATAAA 59.014 32.000 0.00 0.00 0.00 1.40
493 503 5.403766 CACATAAAAACACGCTGGCAAATAA 59.596 36.000 0.00 0.00 0.00 1.40
513 524 1.001487 CCAACATCAACGCACACACAT 60.001 47.619 0.00 0.00 0.00 3.21
587 602 5.713389 TGACTCAAAATGGAGCATCAAGAAT 59.287 36.000 0.00 0.00 38.50 2.40
670 685 9.722056 GATTTGGTCTTCATCATATTGTGTTAC 57.278 33.333 0.00 0.00 0.00 2.50
674 689 8.680001 TCTTGATTTGGTCTTCATCATATTGTG 58.320 33.333 0.00 0.00 0.00 3.33
675 690 8.680903 GTCTTGATTTGGTCTTCATCATATTGT 58.319 33.333 0.00 0.00 0.00 2.71
676 691 8.680001 TGTCTTGATTTGGTCTTCATCATATTG 58.320 33.333 0.00 0.00 0.00 1.90
677 692 8.812513 TGTCTTGATTTGGTCTTCATCATATT 57.187 30.769 0.00 0.00 0.00 1.28
679 694 7.225341 CGATGTCTTGATTTGGTCTTCATCATA 59.775 37.037 0.00 0.00 32.35 2.15
680 695 6.037940 CGATGTCTTGATTTGGTCTTCATCAT 59.962 38.462 0.00 0.00 32.35 2.45
681 696 5.352293 CGATGTCTTGATTTGGTCTTCATCA 59.648 40.000 0.00 0.00 32.35 3.07
682 697 5.582269 TCGATGTCTTGATTTGGTCTTCATC 59.418 40.000 0.00 0.00 0.00 2.92
685 700 5.171476 TCTCGATGTCTTGATTTGGTCTTC 58.829 41.667 0.00 0.00 0.00 2.87
739 754 6.656314 TTGCGTGTCATTAGGTTATAAGTG 57.344 37.500 0.00 0.00 0.00 3.16
745 760 6.380095 AAAACTTTGCGTGTCATTAGGTTA 57.620 33.333 0.00 0.00 0.00 2.85
801 816 0.396435 ATGAGTGCAGGGTTTGACGA 59.604 50.000 0.00 0.00 0.00 4.20
880 903 3.057174 AGCTAGCTAAGGCATACACGATC 60.057 47.826 17.69 0.00 41.70 3.69
971 995 4.096984 GCAAGCACTATAGTTTGCCAAGAT 59.903 41.667 23.26 0.95 39.75 2.40
978 1002 4.424061 TGCAAGCAAGCACTATAGTTTG 57.576 40.909 1.56 7.74 40.11 2.93
1079 1106 0.169230 CCGAGGACGAGTTGAGTCAG 59.831 60.000 0.00 0.00 42.66 3.51
1152 1179 1.609072 GAGTTGAAGGTTGAGTTGGGC 59.391 52.381 0.00 0.00 0.00 5.36
1178 1215 3.264104 GCATGGAATTGATGTTGTTGGG 58.736 45.455 0.00 0.00 0.00 4.12
1180 1217 5.463499 CATGCATGGAATTGATGTTGTTG 57.537 39.130 19.40 0.00 0.00 3.33
1195 1232 1.658114 CTTGGCCGATCCATGCATG 59.342 57.895 20.19 20.19 46.04 4.06
1196 1233 4.169271 CTTGGCCGATCCATGCAT 57.831 55.556 0.00 0.00 46.04 3.96
1210 1247 4.440525 CCCTATGTGGTTAATGCTTGCTTG 60.441 45.833 0.00 0.00 0.00 4.01
1240 1277 2.202797 CTCCGCCGTCACCTGATG 60.203 66.667 0.00 0.00 0.00 3.07
1324 1361 4.720902 CATGAGGCCCACCACGCA 62.721 66.667 0.00 0.00 39.06 5.24
1359 1396 2.173669 CACCATGACCGCTAAGCCG 61.174 63.158 0.00 0.00 0.00 5.52
1479 1516 1.906994 GCACCTGCGCGACAATGTAA 61.907 55.000 12.10 0.00 0.00 2.41
1530 1567 1.078708 CACGGGGTGGTAAATCGCT 60.079 57.895 0.00 0.00 0.00 4.93
1810 1882 0.107459 GGTGGAGCATTGGGAGAGAC 60.107 60.000 0.00 0.00 0.00 3.36
1811 1883 0.252881 AGGTGGAGCATTGGGAGAGA 60.253 55.000 0.00 0.00 0.00 3.10
1812 1884 0.622665 AAGGTGGAGCATTGGGAGAG 59.377 55.000 0.00 0.00 0.00 3.20
1813 1885 0.329261 CAAGGTGGAGCATTGGGAGA 59.671 55.000 0.00 0.00 35.45 3.71
1814 1886 0.038744 ACAAGGTGGAGCATTGGGAG 59.961 55.000 0.00 0.00 42.57 4.30
1815 1887 1.004277 GTACAAGGTGGAGCATTGGGA 59.996 52.381 0.00 0.00 42.57 4.37
1816 1888 1.271871 TGTACAAGGTGGAGCATTGGG 60.272 52.381 0.00 0.00 42.57 4.12
1817 1889 2.086869 CTGTACAAGGTGGAGCATTGG 58.913 52.381 0.00 0.00 42.57 3.16
1818 1890 2.086869 CCTGTACAAGGTGGAGCATTG 58.913 52.381 0.00 0.00 43.74 2.82
1819 1891 2.496899 CCTGTACAAGGTGGAGCATT 57.503 50.000 0.00 0.00 41.74 3.56
1829 1901 2.484264 GCAACCTTAGCACCTGTACAAG 59.516 50.000 0.00 0.00 0.00 3.16
1830 1902 2.500229 GCAACCTTAGCACCTGTACAA 58.500 47.619 0.00 0.00 0.00 2.41
1831 1903 1.271163 GGCAACCTTAGCACCTGTACA 60.271 52.381 0.00 0.00 0.00 2.90
1832 1904 1.271163 TGGCAACCTTAGCACCTGTAC 60.271 52.381 0.00 0.00 0.00 2.90
1833 1905 1.060729 TGGCAACCTTAGCACCTGTA 58.939 50.000 0.00 0.00 0.00 2.74
1834 1906 0.184933 TTGGCAACCTTAGCACCTGT 59.815 50.000 0.00 0.00 0.00 4.00
1835 1907 0.598065 GTTGGCAACCTTAGCACCTG 59.402 55.000 19.57 0.00 0.00 4.00
1836 1908 0.478507 AGTTGGCAACCTTAGCACCT 59.521 50.000 25.81 1.83 0.00 4.00
1837 1909 2.194201 TAGTTGGCAACCTTAGCACC 57.806 50.000 25.81 0.00 0.00 5.01
1838 1910 2.095212 GCTTAGTTGGCAACCTTAGCAC 60.095 50.000 28.84 12.69 32.87 4.40
1839 1911 2.159382 GCTTAGTTGGCAACCTTAGCA 58.841 47.619 28.84 10.60 32.87 3.49
1840 1912 2.159382 TGCTTAGTTGGCAACCTTAGC 58.841 47.619 27.90 27.90 36.71 3.09
1861 1933 7.636150 AACTAGCATGCTACATCAGATTTTT 57.364 32.000 23.52 3.07 0.00 1.94
1862 1934 8.737168 TTAACTAGCATGCTACATCAGATTTT 57.263 30.769 23.52 8.36 0.00 1.82
1863 1935 8.206867 TCTTAACTAGCATGCTACATCAGATTT 58.793 33.333 23.52 9.01 0.00 2.17
1864 1936 7.730084 TCTTAACTAGCATGCTACATCAGATT 58.270 34.615 23.52 13.32 0.00 2.40
1865 1937 7.295322 TCTTAACTAGCATGCTACATCAGAT 57.705 36.000 23.52 12.32 0.00 2.90
1866 1938 6.715347 TCTTAACTAGCATGCTACATCAGA 57.285 37.500 23.52 17.76 0.00 3.27
1867 1939 7.205992 TCTTCTTAACTAGCATGCTACATCAG 58.794 38.462 23.52 17.27 0.00 2.90
1868 1940 7.068716 TCTCTTCTTAACTAGCATGCTACATCA 59.931 37.037 23.52 5.04 0.00 3.07
1869 1941 7.429633 TCTCTTCTTAACTAGCATGCTACATC 58.570 38.462 23.52 0.00 0.00 3.06
1870 1942 7.286546 TCTCTCTTCTTAACTAGCATGCTACAT 59.713 37.037 23.52 16.46 0.00 2.29
1871 1943 6.603599 TCTCTCTTCTTAACTAGCATGCTACA 59.396 38.462 23.52 6.66 0.00 2.74
1872 1944 7.033530 TCTCTCTTCTTAACTAGCATGCTAC 57.966 40.000 23.52 0.00 0.00 3.58
1873 1945 7.646548 TTCTCTCTTCTTAACTAGCATGCTA 57.353 36.000 25.40 25.40 0.00 3.49
1874 1946 6.537453 TTCTCTCTTCTTAACTAGCATGCT 57.463 37.500 25.99 25.99 0.00 3.79
1875 1947 8.141268 ACTATTCTCTCTTCTTAACTAGCATGC 58.859 37.037 10.51 10.51 0.00 4.06
1885 1957 9.303116 GGGTCATCATACTATTCTCTCTTCTTA 57.697 37.037 0.00 0.00 0.00 2.10
1886 1958 8.010105 AGGGTCATCATACTATTCTCTCTTCTT 58.990 37.037 0.00 0.00 0.00 2.52
1887 1959 7.534852 AGGGTCATCATACTATTCTCTCTTCT 58.465 38.462 0.00 0.00 0.00 2.85
1888 1960 7.775053 AGGGTCATCATACTATTCTCTCTTC 57.225 40.000 0.00 0.00 0.00 2.87
1889 1961 7.893302 CCTAGGGTCATCATACTATTCTCTCTT 59.107 40.741 0.00 0.00 0.00 2.85
1890 1962 7.240828 TCCTAGGGTCATCATACTATTCTCTCT 59.759 40.741 9.46 0.00 0.00 3.10
1891 1963 7.406916 TCCTAGGGTCATCATACTATTCTCTC 58.593 42.308 9.46 0.00 0.00 3.20
1892 1964 7.350044 TCCTAGGGTCATCATACTATTCTCT 57.650 40.000 9.46 0.00 0.00 3.10
1893 1965 8.423906 TTTCCTAGGGTCATCATACTATTCTC 57.576 38.462 9.46 0.00 0.00 2.87
1894 1966 8.798975 TTTTCCTAGGGTCATCATACTATTCT 57.201 34.615 9.46 0.00 0.00 2.40
1925 1997 1.475280 CCTAGGTACACGTGCTTAGCA 59.525 52.381 17.22 1.39 35.60 3.49
1926 1998 1.475682 ACCTAGGTACACGTGCTTAGC 59.524 52.381 14.41 11.27 0.00 3.09
1927 1999 2.159282 CCACCTAGGTACACGTGCTTAG 60.159 54.545 15.80 10.14 0.00 2.18
1928 2000 1.820519 CCACCTAGGTACACGTGCTTA 59.179 52.381 15.80 0.00 0.00 3.09
1929 2001 0.606604 CCACCTAGGTACACGTGCTT 59.393 55.000 15.80 0.00 0.00 3.91
1930 2002 0.251474 TCCACCTAGGTACACGTGCT 60.251 55.000 15.80 7.47 39.02 4.40
1931 2003 0.604578 TTCCACCTAGGTACACGTGC 59.395 55.000 15.80 0.00 39.02 5.34
1932 2004 1.403780 GCTTCCACCTAGGTACACGTG 60.404 57.143 15.80 15.48 39.02 4.49
1933 2005 0.893447 GCTTCCACCTAGGTACACGT 59.107 55.000 15.80 0.00 39.02 4.49
1934 2006 0.892755 TGCTTCCACCTAGGTACACG 59.107 55.000 15.80 1.48 39.02 4.49
1935 2007 1.621814 TGTGCTTCCACCTAGGTACAC 59.378 52.381 15.80 17.00 41.35 2.90
1936 2008 2.018355 TGTGCTTCCACCTAGGTACA 57.982 50.000 15.80 11.58 41.35 2.90
1937 2009 3.629142 ATTGTGCTTCCACCTAGGTAC 57.371 47.619 15.80 8.77 41.35 3.34
1938 2010 3.844211 AGAATTGTGCTTCCACCTAGGTA 59.156 43.478 15.80 0.00 41.35 3.08
1939 2011 2.644798 AGAATTGTGCTTCCACCTAGGT 59.355 45.455 9.21 9.21 41.35 3.08
1940 2012 3.012518 CAGAATTGTGCTTCCACCTAGG 58.987 50.000 7.41 7.41 41.35 3.02
1941 2013 3.937706 CTCAGAATTGTGCTTCCACCTAG 59.062 47.826 0.00 0.00 41.35 3.02
1942 2014 3.327757 ACTCAGAATTGTGCTTCCACCTA 59.672 43.478 0.00 0.00 41.35 3.08
1943 2015 2.107204 ACTCAGAATTGTGCTTCCACCT 59.893 45.455 0.00 0.00 41.35 4.00
1944 2016 2.485814 GACTCAGAATTGTGCTTCCACC 59.514 50.000 0.00 0.00 41.35 4.61
1945 2017 3.406764 AGACTCAGAATTGTGCTTCCAC 58.593 45.455 0.00 0.00 42.40 4.02
1946 2018 3.777106 AGACTCAGAATTGTGCTTCCA 57.223 42.857 0.00 0.00 0.00 3.53
1947 2019 7.044798 AGTTATAGACTCAGAATTGTGCTTCC 58.955 38.462 0.00 0.00 31.20 3.46
1948 2020 9.587772 TTAGTTATAGACTCAGAATTGTGCTTC 57.412 33.333 0.00 0.00 39.86 3.86
1968 2040 9.950680 GCTAAGCTTCATGCATTTAATTAGTTA 57.049 29.630 0.00 0.00 45.94 2.24
1969 2041 8.469200 TGCTAAGCTTCATGCATTTAATTAGTT 58.531 29.630 0.00 0.00 45.94 2.24
1970 2042 7.917505 GTGCTAAGCTTCATGCATTTAATTAGT 59.082 33.333 19.65 0.00 45.94 2.24
1971 2043 7.380602 GGTGCTAAGCTTCATGCATTTAATTAG 59.619 37.037 19.65 3.98 45.94 1.73
1972 2044 7.068593 AGGTGCTAAGCTTCATGCATTTAATTA 59.931 33.333 19.65 0.00 45.94 1.40
1973 2045 6.044682 GGTGCTAAGCTTCATGCATTTAATT 58.955 36.000 19.65 0.00 45.94 1.40
1974 2046 5.361857 AGGTGCTAAGCTTCATGCATTTAAT 59.638 36.000 19.65 6.72 45.94 1.40
1975 2047 4.706476 AGGTGCTAAGCTTCATGCATTTAA 59.294 37.500 19.65 0.00 45.94 1.52
1976 2048 4.272489 AGGTGCTAAGCTTCATGCATTTA 58.728 39.130 19.65 0.00 45.94 1.40
1977 2049 3.094572 AGGTGCTAAGCTTCATGCATTT 58.905 40.909 19.65 11.34 45.94 2.32
1978 2050 2.731572 AGGTGCTAAGCTTCATGCATT 58.268 42.857 19.65 11.60 45.94 3.56
1979 2051 2.431954 AGGTGCTAAGCTTCATGCAT 57.568 45.000 19.65 0.00 45.94 3.96
1980 2052 2.205022 AAGGTGCTAAGCTTCATGCA 57.795 45.000 0.00 9.96 40.03 3.96
1981 2053 2.872370 CAAAGGTGCTAAGCTTCATGC 58.128 47.619 0.00 7.16 43.27 4.06
1994 2066 3.411446 TCTAGTCCACAATGCAAAGGTG 58.589 45.455 8.34 8.34 0.00 4.00
1995 2067 3.073062 ACTCTAGTCCACAATGCAAAGGT 59.927 43.478 0.00 0.00 0.00 3.50
1996 2068 3.679389 ACTCTAGTCCACAATGCAAAGG 58.321 45.455 0.00 0.00 0.00 3.11
1997 2069 4.756642 TCAACTCTAGTCCACAATGCAAAG 59.243 41.667 0.00 0.00 0.00 2.77
1998 2070 4.515191 GTCAACTCTAGTCCACAATGCAAA 59.485 41.667 0.00 0.00 0.00 3.68
1999 2071 4.065088 GTCAACTCTAGTCCACAATGCAA 58.935 43.478 0.00 0.00 0.00 4.08
2000 2072 3.070878 TGTCAACTCTAGTCCACAATGCA 59.929 43.478 0.00 0.00 0.00 3.96
2001 2073 3.664107 TGTCAACTCTAGTCCACAATGC 58.336 45.455 0.00 0.00 0.00 3.56
2002 2074 6.808008 AAATGTCAACTCTAGTCCACAATG 57.192 37.500 0.00 0.00 0.00 2.82
2026 2098 9.930693 GTGCTTAGATAAGGTGCTAAGTATATT 57.069 33.333 0.00 0.00 43.36 1.28
2027 2099 8.532819 GGTGCTTAGATAAGGTGCTAAGTATAT 58.467 37.037 0.00 0.00 43.36 0.86
2028 2100 7.728981 AGGTGCTTAGATAAGGTGCTAAGTATA 59.271 37.037 0.00 0.00 43.36 1.47
2029 2101 6.555360 AGGTGCTTAGATAAGGTGCTAAGTAT 59.445 38.462 0.00 0.00 43.36 2.12
2030 2102 5.897824 AGGTGCTTAGATAAGGTGCTAAGTA 59.102 40.000 0.00 0.00 43.36 2.24
2031 2103 4.717280 AGGTGCTTAGATAAGGTGCTAAGT 59.283 41.667 0.00 0.00 43.36 2.24
2032 2104 5.283457 AGGTGCTTAGATAAGGTGCTAAG 57.717 43.478 0.00 0.00 43.95 2.18
2033 2105 5.693769 AAGGTGCTTAGATAAGGTGCTAA 57.306 39.130 2.00 0.00 33.95 3.09
2034 2106 5.428253 CAAAGGTGCTTAGATAAGGTGCTA 58.572 41.667 2.00 0.00 33.95 3.49
2035 2107 4.265073 CAAAGGTGCTTAGATAAGGTGCT 58.735 43.478 2.00 0.00 33.95 4.40
2036 2108 4.622701 CAAAGGTGCTTAGATAAGGTGC 57.377 45.455 2.00 0.00 33.95 5.01
2050 2122 1.180029 CCTCCTCCAATGCAAAGGTG 58.820 55.000 7.57 5.48 0.00 4.00
2051 2123 0.779997 ACCTCCTCCAATGCAAAGGT 59.220 50.000 7.57 2.08 32.35 3.50
2052 2124 1.005215 AGACCTCCTCCAATGCAAAGG 59.995 52.381 0.00 0.00 0.00 3.11
2053 2125 2.503895 AGACCTCCTCCAATGCAAAG 57.496 50.000 0.00 0.00 0.00 2.77
2054 2126 3.330701 ACTTAGACCTCCTCCAATGCAAA 59.669 43.478 0.00 0.00 0.00 3.68
2055 2127 2.912956 ACTTAGACCTCCTCCAATGCAA 59.087 45.455 0.00 0.00 0.00 4.08
2056 2128 2.551270 ACTTAGACCTCCTCCAATGCA 58.449 47.619 0.00 0.00 0.00 3.96
2057 2129 3.493524 GCTACTTAGACCTCCTCCAATGC 60.494 52.174 0.00 0.00 0.00 3.56
2058 2130 3.964031 AGCTACTTAGACCTCCTCCAATG 59.036 47.826 0.00 0.00 0.00 2.82
2059 2131 4.273300 AGCTACTTAGACCTCCTCCAAT 57.727 45.455 0.00 0.00 0.00 3.16
2060 2132 3.759815 AGCTACTTAGACCTCCTCCAA 57.240 47.619 0.00 0.00 0.00 3.53
2061 2133 4.045736 TCTAGCTACTTAGACCTCCTCCA 58.954 47.826 0.00 0.00 0.00 3.86
2062 2134 4.710313 TCTAGCTACTTAGACCTCCTCC 57.290 50.000 0.00 0.00 0.00 4.30
2063 2135 6.016610 CACATTCTAGCTACTTAGACCTCCTC 60.017 46.154 0.00 0.00 29.67 3.71
2064 2136 5.830991 CACATTCTAGCTACTTAGACCTCCT 59.169 44.000 0.00 0.00 29.67 3.69
2065 2137 5.595133 ACACATTCTAGCTACTTAGACCTCC 59.405 44.000 0.00 0.00 29.67 4.30
2066 2138 6.702716 ACACATTCTAGCTACTTAGACCTC 57.297 41.667 0.00 0.00 29.67 3.85
2067 2139 7.283580 CACTACACATTCTAGCTACTTAGACCT 59.716 40.741 0.00 0.00 29.67 3.85
2068 2140 7.419204 CACTACACATTCTAGCTACTTAGACC 58.581 42.308 0.00 0.00 29.67 3.85
2069 2141 6.913673 GCACTACACATTCTAGCTACTTAGAC 59.086 42.308 0.00 0.00 29.67 2.59
2070 2142 6.829298 AGCACTACACATTCTAGCTACTTAGA 59.171 38.462 0.00 0.00 0.00 2.10
2071 2143 7.033530 AGCACTACACATTCTAGCTACTTAG 57.966 40.000 0.00 0.00 0.00 2.18
2072 2144 7.928103 GTAGCACTACACATTCTAGCTACTTA 58.072 38.462 12.80 0.00 45.60 2.24
2073 2145 5.923733 AGCACTACACATTCTAGCTACTT 57.076 39.130 0.00 0.00 0.00 2.24
2074 2146 6.380095 GTAGCACTACACATTCTAGCTACT 57.620 41.667 12.80 0.00 45.60 2.57
2093 2165 8.620416 TGAACCACAATAATAATGTCATGTAGC 58.380 33.333 0.00 0.00 0.00 3.58
2194 2269 4.746089 GCTGGATTCATAGATGCTCCTGTT 60.746 45.833 13.94 0.00 34.21 3.16
2212 2287 1.017177 GTCCAATTGTACGCGCTGGA 61.017 55.000 5.73 7.06 33.77 3.86
2233 2308 1.578215 ATCTCCCTGTGGCAATGGCT 61.578 55.000 8.59 0.00 40.87 4.75
2245 2320 4.510167 CCAAATCTTGGTGTATCTCCCT 57.490 45.455 0.00 0.00 45.93 4.20
2363 2438 9.620660 CTTTTTACACTCTACAACTGTGTTTTT 57.379 29.630 3.35 0.00 43.53 1.94
2366 2441 7.107542 TCCTTTTTACACTCTACAACTGTGTT 58.892 34.615 3.35 0.00 43.53 3.32
2367 2442 6.646267 TCCTTTTTACACTCTACAACTGTGT 58.354 36.000 0.00 0.00 45.39 3.72
2368 2443 7.548196 TTCCTTTTTACACTCTACAACTGTG 57.452 36.000 0.00 0.00 37.67 3.66
2369 2444 8.570068 TTTTCCTTTTTACACTCTACAACTGT 57.430 30.769 0.00 0.00 0.00 3.55
2397 2472 4.497507 GCAATACGCACCTAATCCCTTTTC 60.498 45.833 0.00 0.00 41.79 2.29
2400 2475 2.172717 AGCAATACGCACCTAATCCCTT 59.827 45.455 0.00 0.00 46.13 3.95
2401 2476 1.768870 AGCAATACGCACCTAATCCCT 59.231 47.619 0.00 0.00 46.13 4.20
2402 2477 1.873591 CAGCAATACGCACCTAATCCC 59.126 52.381 0.00 0.00 46.13 3.85
2403 2478 2.833794 TCAGCAATACGCACCTAATCC 58.166 47.619 0.00 0.00 46.13 3.01
2404 2479 3.871594 ACTTCAGCAATACGCACCTAATC 59.128 43.478 0.00 0.00 46.13 1.75
2408 2483 2.185004 AACTTCAGCAATACGCACCT 57.815 45.000 0.00 0.00 46.13 4.00
2469 2548 9.657419 GGACCTGTTTTCATCAAAATATGATTT 57.343 29.630 0.00 0.00 46.85 2.17
2470 2549 7.975616 CGGACCTGTTTTCATCAAAATATGATT 59.024 33.333 0.00 0.00 46.85 2.57
2502 2581 0.393820 TTGAAAGTAGAACCGGCCGT 59.606 50.000 26.12 6.07 0.00 5.68
2506 2585 9.983804 GTAAAATTCTATTGAAAGTAGAACCGG 57.016 33.333 0.00 0.00 40.03 5.28
2507 2586 9.983804 GGTAAAATTCTATTGAAAGTAGAACCG 57.016 33.333 0.00 0.00 40.03 4.44
2538 2621 1.215647 CTAGCCACCGGACAGTCAC 59.784 63.158 9.46 0.00 0.00 3.67
2540 2623 1.035932 TAGCTAGCCACCGGACAGTC 61.036 60.000 9.46 0.00 0.00 3.51
2542 2625 0.315568 GATAGCTAGCCACCGGACAG 59.684 60.000 9.46 0.00 0.00 3.51
2560 2644 3.642848 TGCATCTACATGGCTGATAGTGA 59.357 43.478 0.00 0.00 0.00 3.41
2577 2661 4.970662 TTGTCAGATTTAAGCCTGCATC 57.029 40.909 0.00 0.00 0.00 3.91
2578 2662 5.394883 CCAATTGTCAGATTTAAGCCTGCAT 60.395 40.000 4.43 0.00 0.00 3.96
2579 2663 4.082081 CCAATTGTCAGATTTAAGCCTGCA 60.082 41.667 4.43 0.00 0.00 4.41
2580 2664 4.158394 TCCAATTGTCAGATTTAAGCCTGC 59.842 41.667 4.43 0.00 0.00 4.85
2581 2665 5.902613 TCCAATTGTCAGATTTAAGCCTG 57.097 39.130 4.43 0.00 0.00 4.85
2582 2666 6.260936 CGTATCCAATTGTCAGATTTAAGCCT 59.739 38.462 4.43 0.00 0.00 4.58
2599 2683 7.931407 ACAACAGATATGCTATTTCGTATCCAA 59.069 33.333 0.00 0.00 36.22 3.53
2642 2730 9.891828 GTACAAAATGCCATATATCGAAATGAA 57.108 29.630 7.20 0.00 0.00 2.57
2682 2770 5.750067 ACTGATGTGCAAAACTGTTCAATTC 59.250 36.000 0.00 0.00 0.00 2.17
2695 2783 2.874086 CAACTCTGTCACTGATGTGCAA 59.126 45.455 0.00 0.00 43.49 4.08
2703 2791 4.396166 ACTTCCAAAACAACTCTGTCACTG 59.604 41.667 0.00 0.00 33.45 3.66
2767 2855 9.225201 CGAATGTATTCACACCAAGATTTTATG 57.775 33.333 5.55 0.00 37.54 1.90
2768 2856 9.173021 TCGAATGTATTCACACCAAGATTTTAT 57.827 29.630 5.55 0.00 37.54 1.40
2792 2880 8.595533 GCTACATATGTGTAATTATCCATGTCG 58.404 37.037 18.81 4.23 40.16 4.35
2813 2901 9.745880 GCTACTAATTTATGTCTGTTAGCTACA 57.254 33.333 0.00 0.00 34.95 2.74
2824 2912 8.943909 ACCAACACTAGCTACTAATTTATGTC 57.056 34.615 0.00 0.00 0.00 3.06
2826 2914 9.601217 AAGACCAACACTAGCTACTAATTTATG 57.399 33.333 0.00 0.00 0.00 1.90
2832 2920 4.322499 GCCAAGACCAACACTAGCTACTAA 60.322 45.833 0.00 0.00 0.00 2.24
2836 2924 1.278127 GGCCAAGACCAACACTAGCTA 59.722 52.381 0.00 0.00 0.00 3.32
2837 2925 0.036875 GGCCAAGACCAACACTAGCT 59.963 55.000 0.00 0.00 0.00 3.32
2838 2926 0.036875 AGGCCAAGACCAACACTAGC 59.963 55.000 5.01 0.00 0.00 3.42
2839 2927 2.224523 TGAAGGCCAAGACCAACACTAG 60.225 50.000 5.01 0.00 0.00 2.57
2846 2934 1.623811 GACTACTGAAGGCCAAGACCA 59.376 52.381 5.01 0.00 0.00 4.02
2855 2943 3.691609 GCATTTTGAGGGACTACTGAAGG 59.308 47.826 0.00 0.00 41.55 3.46
2858 2946 3.327757 ACAGCATTTTGAGGGACTACTGA 59.672 43.478 0.00 0.00 41.55 3.41
2867 2955 5.297776 AGGATCGAATAACAGCATTTTGAGG 59.702 40.000 0.00 0.00 0.00 3.86
2894 2982 2.297597 CTGAGGCAGTAGGGCATACTAC 59.702 54.545 11.97 6.24 43.13 2.73
2897 2985 0.394565 CCTGAGGCAGTAGGGCATAC 59.605 60.000 0.06 0.06 46.44 2.39
2902 2990 4.503714 TTTAATTCCTGAGGCAGTAGGG 57.496 45.455 0.00 0.00 34.76 3.53
2907 2995 9.657419 AATAAACAAATTTAATTCCTGAGGCAG 57.343 29.630 0.00 0.00 33.98 4.85
2960 3048 6.095021 CGGGGTTATCCTCCTTTTCTAAAAAG 59.905 42.308 5.40 5.40 35.33 2.27
2966 3054 1.844497 CCGGGGTTATCCTCCTTTTCT 59.156 52.381 0.00 0.00 35.33 2.52
2968 3056 1.562942 GTCCGGGGTTATCCTCCTTTT 59.437 52.381 0.00 0.00 35.33 2.27
2973 3061 1.746171 GCAAAGTCCGGGGTTATCCTC 60.746 57.143 0.00 0.00 35.33 3.71
3016 3105 9.151471 AGATTACGCGAGCATAACATAATAAAT 57.849 29.630 15.93 0.00 0.00 1.40
3025 3114 2.739292 TGGAGATTACGCGAGCATAAC 58.261 47.619 15.93 0.00 0.00 1.89
3035 3124 1.475213 GGGAAGCCCTTGGAGATTACG 60.475 57.143 0.00 0.00 41.34 3.18
3066 3155 4.494091 CCTTAGGGATGATGTTGTCACT 57.506 45.455 0.00 0.00 40.28 3.41
3081 3170 2.840651 CCTATGCCACTATCCCCTTAGG 59.159 54.545 0.00 0.00 0.00 2.69
3110 3199 0.907486 TGTGAAGGAGAGGAGGCATG 59.093 55.000 0.00 0.00 0.00 4.06
3155 3244 7.038048 TCTTGTTGACAGATACTGCATCTAAG 58.962 38.462 0.00 0.00 42.40 2.18
3168 3257 5.977635 TGAACTCTCTTTCTTGTTGACAGA 58.022 37.500 0.00 0.00 31.43 3.41
3219 3308 5.832595 TGAAACACCTCTTTCATGAATTCCA 59.167 36.000 9.40 0.00 35.63 3.53
3253 3342 4.148696 GCGTTGACATCAGGTTTTCATTTG 59.851 41.667 0.00 0.00 0.00 2.32
3295 3384 7.942341 TGTATATTTTCCTCCTCAAAGTGTGTT 59.058 33.333 0.00 0.00 0.00 3.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.