Multiple sequence alignment - TraesCS4D01G349500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G349500 chr4D 100.000 3377 0 0 1 3377 502487723 502491099 0.000000e+00 6237.0
1 TraesCS4D01G349500 chr4D 100.000 63 0 0 2823 2885 123467086 123467024 2.130000e-22 117.0
2 TraesCS4D01G349500 chr4D 100.000 63 0 0 2823 2885 123641740 123641802 2.130000e-22 117.0
3 TraesCS4D01G349500 chr4B 93.259 1884 88 16 522 2381 646862456 646864324 0.000000e+00 2739.0
4 TraesCS4D01G349500 chr4B 92.398 171 12 1 2643 2812 646864321 646864491 3.370000e-60 243.0
5 TraesCS4D01G349500 chr4B 95.652 46 2 0 267 312 479212465 479212420 1.300000e-09 75.0
6 TraesCS4D01G349500 chr5A 93.863 1271 67 4 1111 2381 685793306 685794565 0.000000e+00 1905.0
7 TraesCS4D01G349500 chr5A 96.195 473 13 3 634 1105 685756296 685756764 0.000000e+00 769.0
8 TraesCS4D01G349500 chr5A 92.978 356 25 0 3022 3377 78241089 78241444 1.390000e-143 520.0
9 TraesCS4D01G349500 chr5A 82.752 516 74 7 1130 1635 685873940 685874450 2.390000e-121 446.0
10 TraesCS4D01G349500 chr5A 88.732 355 36 4 2261 2614 685756764 685757115 6.690000e-117 431.0
11 TraesCS4D01G349500 chr5A 92.780 277 13 3 1 271 685748375 685748650 8.780000e-106 394.0
12 TraesCS4D01G349500 chr5A 91.039 279 12 4 269 534 685748861 685749139 6.890000e-97 364.0
13 TraesCS4D01G349500 chr5A 88.293 205 17 2 2619 2823 685757363 685757560 4.350000e-59 239.0
14 TraesCS4D01G349500 chr5A 93.204 103 6 1 2658 2760 685794620 685794721 2.100000e-32 150.0
15 TraesCS4D01G349500 chr5A 88.660 97 7 4 10 105 4623241 4623148 7.660000e-22 115.0
16 TraesCS4D01G349500 chr5A 100.000 62 0 0 582 643 685749320 685749381 7.660000e-22 115.0
17 TraesCS4D01G349500 chr5A 94.118 51 3 0 2953 3003 536910178 536910128 1.000000e-10 78.7
18 TraesCS4D01G349500 chr5A 85.507 69 8 2 2936 3003 494858877 494858810 1.680000e-08 71.3
19 TraesCS4D01G349500 chr7D 94.915 354 15 1 3022 3375 23556802 23557152 4.920000e-153 551.0
20 TraesCS4D01G349500 chr7D 93.258 356 22 1 3022 3375 160432719 160433074 1.070000e-144 523.0
21 TraesCS4D01G349500 chr7D 85.556 90 11 2 1302 1391 620475735 620475822 3.590000e-15 93.5
22 TraesCS4D01G349500 chr3D 94.444 360 16 1 3022 3377 506000127 506000486 4.920000e-153 551.0
23 TraesCS4D01G349500 chr3D 93.889 360 17 2 3022 3377 588018963 588018605 3.830000e-149 538.0
24 TraesCS4D01G349500 chr3D 100.000 63 0 0 2823 2885 308525098 308525036 2.130000e-22 117.0
25 TraesCS4D01G349500 chr3D 88.172 93 8 3 1309 1399 469805077 469804986 1.280000e-19 108.0
26 TraesCS4D01G349500 chr3D 84.946 93 11 3 1309 1399 493036625 493036534 1.290000e-14 91.6
27 TraesCS4D01G349500 chr3D 90.909 66 5 1 2938 3003 59297280 59297344 1.670000e-13 87.9
28 TraesCS4D01G349500 chr3D 92.308 52 3 1 2948 2998 599365280 599365229 4.670000e-09 73.1
29 TraesCS4D01G349500 chr3D 90.385 52 4 1 176 226 569514274 569514325 2.170000e-07 67.6
30 TraesCS4D01G349500 chr3D 91.489 47 3 1 2938 2984 365055718 365055763 2.810000e-06 63.9
31 TraesCS4D01G349500 chr5D 94.398 357 17 1 3021 3377 30944256 30943903 2.290000e-151 545.0
32 TraesCS4D01G349500 chr2A 94.398 357 16 2 3025 3377 770978910 770979266 2.290000e-151 545.0
33 TraesCS4D01G349500 chr2A 91.837 49 4 0 2957 3005 202209174 202209126 6.050000e-08 69.4
34 TraesCS4D01G349500 chr1D 94.085 355 19 2 3023 3377 408413137 408412785 3.830000e-149 538.0
35 TraesCS4D01G349500 chr1D 88.889 63 5 2 2936 2998 111952699 111952759 3.610000e-10 76.8
36 TraesCS4D01G349500 chr1D 100.000 41 0 0 574 614 464848447 464848407 3.610000e-10 76.8
37 TraesCS4D01G349500 chr1D 90.385 52 4 1 176 226 434784761 434784812 2.170000e-07 67.6
38 TraesCS4D01G349500 chr2D 93.611 360 16 2 3025 3377 645447120 645447479 6.420000e-147 531.0
39 TraesCS4D01G349500 chr2D 90.385 52 4 1 176 226 651712158 651712209 2.170000e-07 67.6
40 TraesCS4D01G349500 chr6A 87.143 280 32 3 1138 1415 8192314 8192037 7.030000e-82 315.0
41 TraesCS4D01G349500 chr6A 100.000 63 0 0 2823 2885 9653096 9653034 2.130000e-22 117.0
42 TraesCS4D01G349500 chr7A 79.787 282 44 4 2378 2647 726742137 726742417 3.440000e-45 193.0
43 TraesCS4D01G349500 chr7B 80.695 259 39 9 2384 2639 620590181 620589931 1.240000e-44 191.0
44 TraesCS4D01G349500 chr7B 87.611 113 13 1 1 112 704954652 704954764 2.730000e-26 130.0
45 TraesCS4D01G349500 chr7B 87.611 113 13 1 1 112 704968945 704969057 2.730000e-26 130.0
46 TraesCS4D01G349500 chr7B 87.611 113 13 1 1 112 705095895 705096007 2.730000e-26 130.0
47 TraesCS4D01G349500 chr7B 89.000 100 10 1 1 99 704929596 704929695 4.580000e-24 122.0
48 TraesCS4D01G349500 chr7B 85.841 113 15 1 1 112 705011738 705011850 5.920000e-23 119.0
49 TraesCS4D01G349500 chr7B 85.294 102 13 2 1291 1391 716132984 716133084 1.660000e-18 104.0
50 TraesCS4D01G349500 chr6B 77.978 277 44 7 2375 2639 145047038 145047309 1.250000e-34 158.0
51 TraesCS4D01G349500 chrUn 100.000 63 0 0 2823 2885 182446296 182446234 2.130000e-22 117.0
52 TraesCS4D01G349500 chrUn 100.000 63 0 0 2823 2885 189425510 189425572 2.130000e-22 117.0
53 TraesCS4D01G349500 chrUn 100.000 63 0 0 2823 2885 222875951 222875889 2.130000e-22 117.0
54 TraesCS4D01G349500 chrUn 100.000 63 0 0 2823 2885 437475754 437475692 2.130000e-22 117.0
55 TraesCS4D01G349500 chr3B 77.293 229 33 7 2384 2607 47121112 47120898 2.130000e-22 117.0
56 TraesCS4D01G349500 chr3B 86.567 67 9 0 2937 3003 819226707 819226773 1.300000e-09 75.0
57 TraesCS4D01G349500 chr1A 100.000 63 0 0 2823 2885 94762719 94762657 2.130000e-22 117.0
58 TraesCS4D01G349500 chr1A 89.474 95 7 3 19 112 494738190 494738282 2.130000e-22 117.0
59 TraesCS4D01G349500 chr5B 86.538 104 11 2 1784 1884 658547577 658547680 9.910000e-21 111.0
60 TraesCS4D01G349500 chr5B 84.158 101 15 1 1 100 509825336 509825436 2.770000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G349500 chr4D 502487723 502491099 3376 False 6237.000000 6237 100.000000 1 3377 1 chr4D.!!$F2 3376
1 TraesCS4D01G349500 chr4B 646862456 646864491 2035 False 1491.000000 2739 92.828500 522 2812 2 chr4B.!!$F1 2290
2 TraesCS4D01G349500 chr5A 685793306 685794721 1415 False 1027.500000 1905 93.533500 1111 2760 2 chr5A.!!$F5 1649
3 TraesCS4D01G349500 chr5A 685756296 685757560 1264 False 479.666667 769 91.073333 634 2823 3 chr5A.!!$F4 2189
4 TraesCS4D01G349500 chr5A 685873940 685874450 510 False 446.000000 446 82.752000 1130 1635 1 chr5A.!!$F2 505
5 TraesCS4D01G349500 chr5A 685748375 685749381 1006 False 291.000000 394 94.606333 1 643 3 chr5A.!!$F3 642

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
716 1117 0.316442 CGCACGAAAGCAGCCATATG 60.316 55.0 0.0 0.0 32.54 1.78 F
1017 1427 0.171455 GCATGGAGACGAAGACGACT 59.829 55.0 0.0 0.0 45.46 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1725 2164 0.329596 AAAGATGAGGACTGTGGGGC 59.670 55.0 0.0 0.0 0.0 5.80 R
2902 3590 0.113580 GGGGCAAGTTTTAGGGGTCA 59.886 55.0 0.0 0.0 0.0 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 5.496556 TGTGAAACTGATATTTCGATGGGT 58.503 37.500 0.00 0.00 40.79 4.51
49 50 1.686355 TTCGATGGGTTGTTGCAAGT 58.314 45.000 0.00 0.00 0.00 3.16
115 117 9.725019 CTGAAATATATGTAACTGCTATTGGGA 57.275 33.333 0.00 0.00 0.00 4.37
201 203 6.705863 AATCAGTTTCACTCTTTTCTGCTT 57.294 33.333 0.00 0.00 0.00 3.91
214 216 9.726438 ACTCTTTTCTGCTTATTACACATACTT 57.274 29.630 0.00 0.00 0.00 2.24
312 532 6.858993 TGAAAAAGTGAAATACGTGGTTATGC 59.141 34.615 0.00 0.00 0.00 3.14
318 538 0.531974 ATACGTGGTTATGCTGCCGG 60.532 55.000 0.00 0.00 0.00 6.13
333 560 2.463620 CCGGGACATGCACGTGATG 61.464 63.158 22.23 20.61 43.44 3.07
352 579 1.134128 TGTGGCGTCTTGGATATGCAT 60.134 47.619 3.79 3.79 0.00 3.96
411 638 4.262678 GGGAATACAGAGTAGGAATCCTGC 60.263 50.000 12.96 11.16 36.48 4.85
413 640 1.115467 ACAGAGTAGGAATCCTGCCG 58.885 55.000 12.96 4.85 36.92 5.69
456 689 7.158697 TCCCGTATATAAATGACTTGATGTGG 58.841 38.462 0.00 0.00 0.00 4.17
472 705 4.696877 TGATGTGGTGTCTTGCTCTTATTG 59.303 41.667 0.00 0.00 0.00 1.90
565 959 2.839975 GGCAAGTAGCTGATCCTTACC 58.160 52.381 0.00 0.00 44.79 2.85
572 966 5.530243 AGTAGCTGATCCTTACCTTACCTT 58.470 41.667 0.00 0.00 0.00 3.50
654 1049 3.948851 TCGCTGTACATATGAGTTCGTC 58.051 45.455 10.38 0.00 0.00 4.20
715 1116 0.744414 ACGCACGAAAGCAGCCATAT 60.744 50.000 0.00 0.00 32.54 1.78
716 1117 0.316442 CGCACGAAAGCAGCCATATG 60.316 55.000 0.00 0.00 32.54 1.78
717 1118 0.593263 GCACGAAAGCAGCCATATGC 60.593 55.000 0.00 0.00 46.88 3.14
950 1360 2.475852 CGCCACTACTCTTACTGACGTC 60.476 54.545 9.11 9.11 0.00 4.34
1017 1427 0.171455 GCATGGAGACGAAGACGACT 59.829 55.000 0.00 0.00 45.46 4.18
1035 1445 1.440938 CTACTCCGCTCCTGACTCCG 61.441 65.000 0.00 0.00 0.00 4.63
1065 1475 1.802636 CGATTTCAACCTGGCGCAT 59.197 52.632 10.83 0.00 0.00 4.73
1092 1502 7.175990 AGGTCAGTTGATTACTATAGCTAGCTC 59.824 40.741 23.26 4.83 34.56 4.09
1116 1544 1.017701 CCCGTTTCCTTAGTGACGCC 61.018 60.000 0.00 0.00 34.41 5.68
1184 1612 2.201708 TGCAGGTCGTACGGGAACA 61.202 57.895 16.52 5.17 0.00 3.18
1332 1760 4.767255 GCAGGTGGAGGCGTGGAG 62.767 72.222 0.00 0.00 0.00 3.86
1416 1844 4.487412 CGTCTCGCCCACCGGTAC 62.487 72.222 6.87 0.00 37.59 3.34
1516 1953 4.092529 CGAAGTGTCAAGTCTCAATCATGG 59.907 45.833 0.00 0.00 0.00 3.66
1725 2164 7.383029 GGTAATTAATGATCAACCATGCATGTG 59.617 37.037 24.58 17.13 0.00 3.21
1729 2168 1.332144 ATCAACCATGCATGTGCCCC 61.332 55.000 24.58 0.00 41.18 5.80
2058 2501 2.264794 GTCATGAACGGGCTCGGT 59.735 61.111 12.42 1.58 41.39 4.69
2104 2547 1.733041 CGGATGTGCGTCAACGAGT 60.733 57.895 6.75 0.00 43.02 4.18
2118 2561 2.029666 GAGTGGATGATCCCGCGG 59.970 66.667 21.04 21.04 41.42 6.46
2147 2590 0.882927 CCGTTCAGGAAGGCGTTCAA 60.883 55.000 19.90 4.10 45.00 2.69
2340 2783 2.751259 CACATCTGATCCTGTTGTTGGG 59.249 50.000 0.00 0.00 0.00 4.12
2364 2807 4.721132 ACACCGATTACCCTTTTCTTGAA 58.279 39.130 0.00 0.00 0.00 2.69
2365 2808 5.134661 ACACCGATTACCCTTTTCTTGAAA 58.865 37.500 0.00 0.00 0.00 2.69
2395 2838 1.630369 AGCTAAGGGCATGAACAGTGA 59.370 47.619 0.00 0.00 44.79 3.41
2402 2845 4.858850 AGGGCATGAACAGTGATTGATAA 58.141 39.130 0.00 0.00 0.00 1.75
2461 2904 7.492669 AGAGATGACAATAAAACCATGTCTACG 59.507 37.037 0.00 0.00 42.99 3.51
2464 2907 9.256477 GATGACAATAAAACCATGTCTACGATA 57.744 33.333 6.68 0.00 42.99 2.92
2465 2908 8.642908 TGACAATAAAACCATGTCTACGATAG 57.357 34.615 6.68 0.00 42.99 2.08
2466 2909 8.471609 TGACAATAAAACCATGTCTACGATAGA 58.528 33.333 6.68 0.00 42.99 1.98
2467 2910 8.873215 ACAATAAAACCATGTCTACGATAGAG 57.127 34.615 0.00 0.00 35.04 2.43
2473 2916 6.804770 ACCATGTCTACGATAGAGTATGTC 57.195 41.667 0.00 0.00 35.04 3.06
2478 2921 9.210329 CATGTCTACGATAGAGTATGTCTTAGT 57.790 37.037 0.00 0.00 36.64 2.24
2550 2994 9.147732 TGTGCTAGGAGATCATCTCTTAAATAA 57.852 33.333 14.54 0.00 42.95 1.40
2552 2996 9.593565 TGCTAGGAGATCATCTCTTAAATAAGA 57.406 33.333 14.54 3.08 42.95 2.10
2584 3028 8.125448 CGAGTCTTTTCTTGTGATTTCTTTCTT 58.875 33.333 0.00 0.00 0.00 2.52
2593 3037 5.308825 TGTGATTTCTTTCTTCTCCACCTC 58.691 41.667 0.00 0.00 0.00 3.85
2602 3046 7.461749 TCTTTCTTCTCCACCTCAACATTTAT 58.538 34.615 0.00 0.00 0.00 1.40
2614 3058 9.173021 CACCTCAACATTTATCCTATGTAACAA 57.827 33.333 0.00 0.00 35.26 2.83
2633 3320 9.416794 TGTAACAATTTTAACATAGCACCATTG 57.583 29.630 0.00 0.00 0.00 2.82
2676 3363 0.687354 ACTCTTGTCGTGCTTGGGAT 59.313 50.000 0.00 0.00 0.00 3.85
2689 3376 2.097825 CTTGGGATTTGGGAGCTTCTG 58.902 52.381 0.00 0.00 0.00 3.02
2760 3448 3.423539 AGCACACAAAATCAGGCTAGA 57.576 42.857 0.00 0.00 0.00 2.43
2787 3475 6.892658 ATGTTTTTATGTGGTGTTAGCTCA 57.107 33.333 0.00 0.00 0.00 4.26
2788 3476 6.312399 TGTTTTTATGTGGTGTTAGCTCAG 57.688 37.500 0.00 0.00 0.00 3.35
2823 3511 0.762461 GGGCATCTCTAGCAGTCCCT 60.762 60.000 0.00 0.00 0.00 4.20
2824 3512 1.481428 GGGCATCTCTAGCAGTCCCTA 60.481 57.143 0.00 0.00 0.00 3.53
2825 3513 1.892474 GGCATCTCTAGCAGTCCCTAG 59.108 57.143 0.00 0.00 36.88 3.02
2826 3514 2.489985 GGCATCTCTAGCAGTCCCTAGA 60.490 54.545 0.00 0.00 41.01 2.43
2830 3518 2.738587 TCTAGCAGTCCCTAGAGTGG 57.261 55.000 0.00 0.00 42.77 4.00
2836 3524 4.643930 TCCCTAGAGTGGGGAGGA 57.356 61.111 0.00 0.00 46.99 3.71
2837 3525 2.829267 TCCCTAGAGTGGGGAGGAA 58.171 57.895 0.00 0.00 46.99 3.36
2838 3526 0.637195 TCCCTAGAGTGGGGAGGAAG 59.363 60.000 0.00 0.00 46.99 3.46
2839 3527 0.637195 CCCTAGAGTGGGGAGGAAGA 59.363 60.000 0.00 0.00 46.50 2.87
2840 3528 1.008449 CCCTAGAGTGGGGAGGAAGAA 59.992 57.143 0.00 0.00 46.50 2.52
2841 3529 2.112190 CCTAGAGTGGGGAGGAAGAAC 58.888 57.143 0.00 0.00 31.45 3.01
2842 3530 2.559931 CCTAGAGTGGGGAGGAAGAACA 60.560 54.545 0.00 0.00 31.45 3.18
2843 3531 1.353091 AGAGTGGGGAGGAAGAACAC 58.647 55.000 0.00 0.00 0.00 3.32
2844 3532 0.325272 GAGTGGGGAGGAAGAACACC 59.675 60.000 0.00 0.00 32.71 4.16
2845 3533 1.134438 AGTGGGGAGGAAGAACACCC 61.134 60.000 0.00 0.00 41.84 4.61
2846 3534 1.134438 GTGGGGAGGAAGAACACCCT 61.134 60.000 0.00 0.00 42.00 4.34
2847 3535 0.840722 TGGGGAGGAAGAACACCCTC 60.841 60.000 0.00 0.00 46.29 4.30
2848 3536 0.547954 GGGGAGGAAGAACACCCTCT 60.548 60.000 0.00 0.00 46.26 3.69
2849 3537 1.273666 GGGGAGGAAGAACACCCTCTA 60.274 57.143 0.00 0.00 46.26 2.43
2850 3538 2.112190 GGGAGGAAGAACACCCTCTAG 58.888 57.143 0.00 0.00 46.26 2.43
2851 3539 2.292323 GGGAGGAAGAACACCCTCTAGA 60.292 54.545 0.00 0.00 46.26 2.43
2852 3540 2.761767 GGAGGAAGAACACCCTCTAGAC 59.238 54.545 0.00 0.00 46.26 2.59
2853 3541 2.761767 GAGGAAGAACACCCTCTAGACC 59.238 54.545 0.00 0.00 44.23 3.85
2854 3542 2.111972 AGGAAGAACACCCTCTAGACCA 59.888 50.000 0.00 0.00 0.00 4.02
2855 3543 2.498078 GGAAGAACACCCTCTAGACCAG 59.502 54.545 0.00 0.00 0.00 4.00
2856 3544 2.239681 AGAACACCCTCTAGACCAGG 57.760 55.000 0.00 0.00 0.00 4.45
2857 3545 1.717077 AGAACACCCTCTAGACCAGGA 59.283 52.381 0.00 0.00 31.91 3.86
2858 3546 2.316372 AGAACACCCTCTAGACCAGGAT 59.684 50.000 0.00 0.00 31.91 3.24
2859 3547 3.532232 AGAACACCCTCTAGACCAGGATA 59.468 47.826 0.00 0.00 31.91 2.59
2860 3548 4.016479 AGAACACCCTCTAGACCAGGATAA 60.016 45.833 0.00 0.00 31.91 1.75
2861 3549 3.644335 ACACCCTCTAGACCAGGATAAC 58.356 50.000 0.00 0.00 31.91 1.89
2862 3550 3.272551 ACACCCTCTAGACCAGGATAACT 59.727 47.826 0.00 0.00 31.91 2.24
2863 3551 4.264895 ACACCCTCTAGACCAGGATAACTT 60.265 45.833 0.00 0.00 31.91 2.66
2864 3552 5.043582 ACACCCTCTAGACCAGGATAACTTA 60.044 44.000 0.00 0.00 31.91 2.24
2865 3553 5.302313 CACCCTCTAGACCAGGATAACTTAC 59.698 48.000 0.00 0.00 31.91 2.34
2866 3554 5.196165 ACCCTCTAGACCAGGATAACTTACT 59.804 44.000 0.00 0.00 31.91 2.24
2867 3555 6.392245 ACCCTCTAGACCAGGATAACTTACTA 59.608 42.308 0.00 0.00 31.91 1.82
2868 3556 7.091628 ACCCTCTAGACCAGGATAACTTACTAA 60.092 40.741 0.00 0.00 31.91 2.24
2869 3557 7.951245 CCCTCTAGACCAGGATAACTTACTAAT 59.049 40.741 0.00 0.00 31.91 1.73
2870 3558 9.369672 CCTCTAGACCAGGATAACTTACTAATT 57.630 37.037 0.00 0.00 31.91 1.40
2872 3560 9.931698 TCTAGACCAGGATAACTTACTAATTCA 57.068 33.333 0.00 0.00 0.00 2.57
2884 3572 8.728088 AACTTACTAATTCAATTGACAAAGCG 57.272 30.769 7.89 0.00 0.00 4.68
2885 3573 8.094798 ACTTACTAATTCAATTGACAAAGCGA 57.905 30.769 7.89 0.00 0.00 4.93
2886 3574 8.564574 ACTTACTAATTCAATTGACAAAGCGAA 58.435 29.630 7.89 3.51 0.00 4.70
2887 3575 8.722342 TTACTAATTCAATTGACAAAGCGAAC 57.278 30.769 7.89 0.00 0.00 3.95
2888 3576 6.970484 ACTAATTCAATTGACAAAGCGAACT 58.030 32.000 7.89 0.00 0.00 3.01
2889 3577 8.094798 ACTAATTCAATTGACAAAGCGAACTA 57.905 30.769 7.89 0.00 0.00 2.24
2890 3578 8.564574 ACTAATTCAATTGACAAAGCGAACTAA 58.435 29.630 7.89 0.00 0.00 2.24
2891 3579 9.393249 CTAATTCAATTGACAAAGCGAACTAAA 57.607 29.630 7.89 0.00 0.00 1.85
2892 3580 8.816640 AATTCAATTGACAAAGCGAACTAAAT 57.183 26.923 7.89 0.00 0.00 1.40
2893 3581 8.816640 ATTCAATTGACAAAGCGAACTAAATT 57.183 26.923 7.89 0.00 0.00 1.82
2894 3582 7.621832 TCAATTGACAAAGCGAACTAAATTG 57.378 32.000 3.38 0.00 35.89 2.32
2895 3583 6.640499 TCAATTGACAAAGCGAACTAAATTGG 59.360 34.615 3.38 0.00 35.50 3.16
2896 3584 4.497473 TGACAAAGCGAACTAAATTGGG 57.503 40.909 0.00 0.00 0.00 4.12
2897 3585 3.254657 TGACAAAGCGAACTAAATTGGGG 59.745 43.478 0.00 0.00 0.00 4.96
2898 3586 3.227614 ACAAAGCGAACTAAATTGGGGT 58.772 40.909 0.00 0.00 0.00 4.95
2899 3587 3.639561 ACAAAGCGAACTAAATTGGGGTT 59.360 39.130 0.00 0.00 0.00 4.11
2900 3588 4.100344 ACAAAGCGAACTAAATTGGGGTTT 59.900 37.500 0.00 0.00 0.00 3.27
2901 3589 4.948341 AAGCGAACTAAATTGGGGTTTT 57.052 36.364 0.00 0.00 0.00 2.43
2902 3590 4.948341 AGCGAACTAAATTGGGGTTTTT 57.052 36.364 0.00 0.00 0.00 1.94
2903 3591 4.627058 AGCGAACTAAATTGGGGTTTTTG 58.373 39.130 0.00 0.00 0.00 2.44
2904 3592 4.342665 AGCGAACTAAATTGGGGTTTTTGA 59.657 37.500 0.00 0.00 0.00 2.69
2905 3593 4.446385 GCGAACTAAATTGGGGTTTTTGAC 59.554 41.667 0.00 0.00 0.00 3.18
2918 3606 4.124238 GGTTTTTGACCCCTAAAACTTGC 58.876 43.478 12.28 0.00 43.00 4.01
2919 3607 4.124238 GTTTTTGACCCCTAAAACTTGCC 58.876 43.478 0.00 0.00 41.46 4.52
2920 3608 2.003937 TTGACCCCTAAAACTTGCCC 57.996 50.000 0.00 0.00 0.00 5.36
2921 3609 0.113580 TGACCCCTAAAACTTGCCCC 59.886 55.000 0.00 0.00 0.00 5.80
2922 3610 0.963856 GACCCCTAAAACTTGCCCCG 60.964 60.000 0.00 0.00 0.00 5.73
2923 3611 1.076014 CCCCTAAAACTTGCCCCGT 59.924 57.895 0.00 0.00 0.00 5.28
2924 3612 0.328926 CCCCTAAAACTTGCCCCGTA 59.671 55.000 0.00 0.00 0.00 4.02
2925 3613 1.064240 CCCCTAAAACTTGCCCCGTAT 60.064 52.381 0.00 0.00 0.00 3.06
2926 3614 2.294979 CCCTAAAACTTGCCCCGTATC 58.705 52.381 0.00 0.00 0.00 2.24
2927 3615 2.092592 CCCTAAAACTTGCCCCGTATCT 60.093 50.000 0.00 0.00 0.00 1.98
2928 3616 3.617284 CCTAAAACTTGCCCCGTATCTT 58.383 45.455 0.00 0.00 0.00 2.40
2929 3617 4.014406 CCTAAAACTTGCCCCGTATCTTT 58.986 43.478 0.00 0.00 0.00 2.52
2930 3618 4.095932 CCTAAAACTTGCCCCGTATCTTTC 59.904 45.833 0.00 0.00 0.00 2.62
2931 3619 3.434940 AAACTTGCCCCGTATCTTTCT 57.565 42.857 0.00 0.00 0.00 2.52
2932 3620 3.434940 AACTTGCCCCGTATCTTTCTT 57.565 42.857 0.00 0.00 0.00 2.52
2933 3621 4.563140 AACTTGCCCCGTATCTTTCTTA 57.437 40.909 0.00 0.00 0.00 2.10
2934 3622 4.772886 ACTTGCCCCGTATCTTTCTTAT 57.227 40.909 0.00 0.00 0.00 1.73
2935 3623 5.881923 ACTTGCCCCGTATCTTTCTTATA 57.118 39.130 0.00 0.00 0.00 0.98
2936 3624 6.435292 ACTTGCCCCGTATCTTTCTTATAT 57.565 37.500 0.00 0.00 0.00 0.86
2937 3625 6.838382 ACTTGCCCCGTATCTTTCTTATATT 58.162 36.000 0.00 0.00 0.00 1.28
2938 3626 7.287810 ACTTGCCCCGTATCTTTCTTATATTT 58.712 34.615 0.00 0.00 0.00 1.40
2939 3627 7.778382 ACTTGCCCCGTATCTTTCTTATATTTT 59.222 33.333 0.00 0.00 0.00 1.82
2940 3628 8.528044 TTGCCCCGTATCTTTCTTATATTTTT 57.472 30.769 0.00 0.00 0.00 1.94
2957 3645 3.907894 TTTTTCCGATAAAGTGCGCTT 57.092 38.095 9.73 6.71 36.30 4.68
2958 3646 3.907894 TTTTCCGATAAAGTGCGCTTT 57.092 38.095 26.94 26.94 45.85 3.51
2972 3660 6.812879 AGTGCGCTTTATTACTTAAAAGGT 57.187 33.333 9.73 0.00 34.07 3.50
2973 3661 7.210718 AGTGCGCTTTATTACTTAAAAGGTT 57.789 32.000 9.73 0.00 34.07 3.50
2974 3662 7.654568 AGTGCGCTTTATTACTTAAAAGGTTT 58.345 30.769 9.73 0.00 34.07 3.27
2975 3663 8.785946 AGTGCGCTTTATTACTTAAAAGGTTTA 58.214 29.630 9.73 0.00 34.07 2.01
2976 3664 9.396938 GTGCGCTTTATTACTTAAAAGGTTTAA 57.603 29.630 9.73 0.00 34.07 1.52
2977 3665 9.962783 TGCGCTTTATTACTTAAAAGGTTTAAA 57.037 25.926 9.73 0.00 34.07 1.52
2991 3679 8.481974 AAAAGGTTTAAACATTACACACAACC 57.518 30.769 17.71 0.00 31.98 3.77
2992 3680 7.412853 AAGGTTTAAACATTACACACAACCT 57.587 32.000 16.07 0.00 43.72 3.50
2993 3681 7.034685 AGGTTTAAACATTACACACAACCTC 57.965 36.000 19.57 0.00 38.74 3.85
2994 3682 6.831868 AGGTTTAAACATTACACACAACCTCT 59.168 34.615 19.57 0.00 38.74 3.69
2995 3683 6.915843 GGTTTAAACATTACACACAACCTCTG 59.084 38.462 19.57 0.00 31.48 3.35
2996 3684 4.568152 AAACATTACACACAACCTCTGC 57.432 40.909 0.00 0.00 0.00 4.26
2997 3685 3.207265 ACATTACACACAACCTCTGCA 57.793 42.857 0.00 0.00 0.00 4.41
2998 3686 3.754965 ACATTACACACAACCTCTGCAT 58.245 40.909 0.00 0.00 0.00 3.96
2999 3687 4.905429 ACATTACACACAACCTCTGCATA 58.095 39.130 0.00 0.00 0.00 3.14
3000 3688 5.312895 ACATTACACACAACCTCTGCATAA 58.687 37.500 0.00 0.00 0.00 1.90
3001 3689 5.181245 ACATTACACACAACCTCTGCATAAC 59.819 40.000 0.00 0.00 0.00 1.89
3002 3690 3.492102 ACACACAACCTCTGCATAACT 57.508 42.857 0.00 0.00 0.00 2.24
3003 3691 3.141398 ACACACAACCTCTGCATAACTG 58.859 45.455 0.00 0.00 0.00 3.16
3004 3692 2.485426 CACACAACCTCTGCATAACTGG 59.515 50.000 0.00 0.00 0.00 4.00
3005 3693 2.371841 ACACAACCTCTGCATAACTGGA 59.628 45.455 0.00 0.00 0.00 3.86
3006 3694 3.181445 ACACAACCTCTGCATAACTGGAA 60.181 43.478 0.00 0.00 0.00 3.53
3007 3695 3.820467 CACAACCTCTGCATAACTGGAAA 59.180 43.478 0.00 0.00 0.00 3.13
3008 3696 4.278170 CACAACCTCTGCATAACTGGAAAA 59.722 41.667 0.00 0.00 0.00 2.29
3009 3697 4.278419 ACAACCTCTGCATAACTGGAAAAC 59.722 41.667 0.00 0.00 0.00 2.43
3010 3698 4.373156 ACCTCTGCATAACTGGAAAACT 57.627 40.909 0.00 0.00 0.00 2.66
3011 3699 4.074970 ACCTCTGCATAACTGGAAAACTG 58.925 43.478 0.00 0.00 0.00 3.16
3012 3700 3.441572 CCTCTGCATAACTGGAAAACTGG 59.558 47.826 0.00 0.00 0.00 4.00
3013 3701 4.326826 CTCTGCATAACTGGAAAACTGGA 58.673 43.478 0.00 0.00 0.00 3.86
3014 3702 4.326826 TCTGCATAACTGGAAAACTGGAG 58.673 43.478 0.00 0.00 0.00 3.86
3015 3703 2.819608 TGCATAACTGGAAAACTGGAGC 59.180 45.455 0.00 0.00 0.00 4.70
3016 3704 2.819608 GCATAACTGGAAAACTGGAGCA 59.180 45.455 0.00 0.00 0.00 4.26
3017 3705 3.255642 GCATAACTGGAAAACTGGAGCAA 59.744 43.478 0.00 0.00 0.00 3.91
3018 3706 4.082026 GCATAACTGGAAAACTGGAGCAAT 60.082 41.667 0.00 0.00 0.00 3.56
3019 3707 5.567423 GCATAACTGGAAAACTGGAGCAATT 60.567 40.000 0.00 0.00 0.00 2.32
3020 3708 4.590850 AACTGGAAAACTGGAGCAATTC 57.409 40.909 0.00 0.00 0.00 2.17
3021 3709 2.893489 ACTGGAAAACTGGAGCAATTCC 59.107 45.455 0.00 0.00 46.98 3.01
3022 3710 2.232208 CTGGAAAACTGGAGCAATTCCC 59.768 50.000 0.00 0.00 46.19 3.97
3023 3711 2.158325 TGGAAAACTGGAGCAATTCCCT 60.158 45.455 0.00 0.00 46.19 4.20
3024 3712 2.493675 GGAAAACTGGAGCAATTCCCTC 59.506 50.000 0.00 0.00 46.19 4.30
3025 3713 2.222227 AAACTGGAGCAATTCCCTCC 57.778 50.000 12.71 12.71 46.19 4.30
3026 3714 0.332972 AACTGGAGCAATTCCCTCCC 59.667 55.000 15.66 3.14 46.69 4.30
3027 3715 0.846427 ACTGGAGCAATTCCCTCCCA 60.846 55.000 15.66 6.49 46.69 4.37
3028 3716 0.332632 CTGGAGCAATTCCCTCCCAA 59.667 55.000 15.66 1.97 46.69 4.12
3029 3717 0.039618 TGGAGCAATTCCCTCCCAAC 59.960 55.000 15.66 0.00 46.69 3.77
3030 3718 0.684479 GGAGCAATTCCCTCCCAACC 60.684 60.000 9.59 0.00 42.46 3.77
3031 3719 0.684479 GAGCAATTCCCTCCCAACCC 60.684 60.000 0.00 0.00 0.00 4.11
3032 3720 1.149133 AGCAATTCCCTCCCAACCCT 61.149 55.000 0.00 0.00 0.00 4.34
3033 3721 0.629058 GCAATTCCCTCCCAACCCTA 59.371 55.000 0.00 0.00 0.00 3.53
3034 3722 1.410224 GCAATTCCCTCCCAACCCTAG 60.410 57.143 0.00 0.00 0.00 3.02
3035 3723 0.927029 AATTCCCTCCCAACCCTAGC 59.073 55.000 0.00 0.00 0.00 3.42
3036 3724 0.994050 ATTCCCTCCCAACCCTAGCC 60.994 60.000 0.00 0.00 0.00 3.93
3037 3725 3.480133 CCCTCCCAACCCTAGCCG 61.480 72.222 0.00 0.00 0.00 5.52
3038 3726 4.176752 CCTCCCAACCCTAGCCGC 62.177 72.222 0.00 0.00 0.00 6.53
3039 3727 4.176752 CTCCCAACCCTAGCCGCC 62.177 72.222 0.00 0.00 0.00 6.13
3043 3731 4.176752 CAACCCTAGCCGCCCCTC 62.177 72.222 0.00 0.00 0.00 4.30
3048 3736 4.548513 CTAGCCGCCCCTCCTCCT 62.549 72.222 0.00 0.00 0.00 3.69
3049 3737 4.541648 TAGCCGCCCCTCCTCCTC 62.542 72.222 0.00 0.00 0.00 3.71
3055 3743 4.825679 CCCCTCCTCCTCACCCCC 62.826 77.778 0.00 0.00 0.00 5.40
3070 3758 4.610228 CCCCCTTCTTCCCTTCCT 57.390 61.111 0.00 0.00 0.00 3.36
3071 3759 2.312323 CCCCCTTCTTCCCTTCCTC 58.688 63.158 0.00 0.00 0.00 3.71
3072 3760 1.627297 CCCCCTTCTTCCCTTCCTCG 61.627 65.000 0.00 0.00 0.00 4.63
3073 3761 1.222113 CCCTTCTTCCCTTCCTCGC 59.778 63.158 0.00 0.00 0.00 5.03
3074 3762 1.222113 CCTTCTTCCCTTCCTCGCC 59.778 63.158 0.00 0.00 0.00 5.54
3075 3763 1.153549 CTTCTTCCCTTCCTCGCCG 60.154 63.158 0.00 0.00 0.00 6.46
3076 3764 3.310860 TTCTTCCCTTCCTCGCCGC 62.311 63.158 0.00 0.00 0.00 6.53
3077 3765 4.840005 CTTCCCTTCCTCGCCGCC 62.840 72.222 0.00 0.00 0.00 6.13
3148 3836 4.785453 CCTCGGTTGCCCTGCCTC 62.785 72.222 0.00 0.00 0.00 4.70
3149 3837 3.710722 CTCGGTTGCCCTGCCTCT 61.711 66.667 0.00 0.00 0.00 3.69
3150 3838 3.965539 CTCGGTTGCCCTGCCTCTG 62.966 68.421 0.00 0.00 0.00 3.35
3159 3847 4.020617 CTGCCTCTGCGTGGGGAA 62.021 66.667 0.00 0.00 41.78 3.97
3160 3848 4.329545 TGCCTCTGCGTGGGGAAC 62.330 66.667 0.00 0.00 41.78 3.62
3173 3861 3.231298 GGAACCCCGGATCTGGAG 58.769 66.667 23.02 11.90 0.00 3.86
3174 3862 2.506472 GAACCCCGGATCTGGAGC 59.494 66.667 23.02 4.29 0.00 4.70
3175 3863 3.447025 GAACCCCGGATCTGGAGCG 62.447 68.421 23.02 11.04 0.00 5.03
3192 3880 3.830192 GGCGGCTCCATTGGCAAG 61.830 66.667 5.96 0.00 34.01 4.01
3193 3881 3.830192 GCGGCTCCATTGGCAAGG 61.830 66.667 5.96 5.28 0.00 3.61
3194 3882 3.830192 CGGCTCCATTGGCAAGGC 61.830 66.667 6.33 3.22 0.00 4.35
3195 3883 2.681064 GGCTCCATTGGCAAGGCA 60.681 61.111 6.33 0.00 35.78 4.75
3196 3884 2.575461 GCTCCATTGGCAAGGCAC 59.425 61.111 6.33 0.00 0.00 5.01
3197 3885 2.879907 CTCCATTGGCAAGGCACG 59.120 61.111 6.33 0.00 0.00 5.34
3198 3886 2.676121 TCCATTGGCAAGGCACGG 60.676 61.111 6.33 0.28 0.00 4.94
3199 3887 4.440127 CCATTGGCAAGGCACGGC 62.440 66.667 6.33 0.00 0.00 5.68
3236 3924 4.530857 CGGTGGATCTGGCGTCCC 62.531 72.222 0.00 0.00 34.76 4.46
3237 3925 4.530857 GGTGGATCTGGCGTCCCG 62.531 72.222 0.00 0.00 34.76 5.14
3238 3926 3.458163 GTGGATCTGGCGTCCCGA 61.458 66.667 0.00 0.00 34.76 5.14
3239 3927 3.458163 TGGATCTGGCGTCCCGAC 61.458 66.667 0.00 0.00 34.76 4.79
3240 3928 4.222847 GGATCTGGCGTCCCGACC 62.223 72.222 0.00 0.00 31.60 4.79
3241 3929 4.570663 GATCTGGCGTCCCGACCG 62.571 72.222 0.00 0.00 31.60 4.79
3268 3956 3.766691 CGGGATCCGGTGGTCGTT 61.767 66.667 11.10 0.00 44.15 3.85
3269 3957 2.125269 GGGATCCGGTGGTCGTTG 60.125 66.667 5.45 0.00 37.11 4.10
3270 3958 2.125269 GGATCCGGTGGTCGTTGG 60.125 66.667 0.00 0.00 37.11 3.77
3271 3959 2.818274 GATCCGGTGGTCGTTGGC 60.818 66.667 0.00 0.00 37.11 4.52
3272 3960 4.752879 ATCCGGTGGTCGTTGGCG 62.753 66.667 0.00 0.00 37.11 5.69
3301 3989 3.257561 CTTCTGCGGCGGTCGATG 61.258 66.667 6.02 0.00 42.43 3.84
3312 4000 4.039601 GTCGATGCGCGCGATCTG 62.040 66.667 37.18 24.23 40.19 2.90
3324 4012 3.934962 GATCTGGCGCCTCCCCTC 61.935 72.222 29.70 13.15 0.00 4.30
3333 4021 3.700350 CCTCCCCTCCTCCCCTGT 61.700 72.222 0.00 0.00 0.00 4.00
3334 4022 2.456840 CTCCCCTCCTCCCCTGTT 59.543 66.667 0.00 0.00 0.00 3.16
3335 4023 1.690985 CTCCCCTCCTCCCCTGTTC 60.691 68.421 0.00 0.00 0.00 3.18
3336 4024 3.083997 CCCCTCCTCCCCTGTTCG 61.084 72.222 0.00 0.00 0.00 3.95
3337 4025 3.083997 CCCTCCTCCCCTGTTCGG 61.084 72.222 0.00 0.00 0.00 4.30
3338 4026 3.787001 CCTCCTCCCCTGTTCGGC 61.787 72.222 0.00 0.00 0.00 5.54
3339 4027 3.003173 CTCCTCCCCTGTTCGGCA 61.003 66.667 0.00 0.00 0.00 5.69
3340 4028 2.285368 TCCTCCCCTGTTCGGCAT 60.285 61.111 0.00 0.00 0.00 4.40
3341 4029 2.124570 CCTCCCCTGTTCGGCATG 60.125 66.667 0.00 0.00 0.00 4.06
3342 4030 2.825836 CTCCCCTGTTCGGCATGC 60.826 66.667 9.90 9.90 0.00 4.06
3343 4031 4.776322 TCCCCTGTTCGGCATGCG 62.776 66.667 12.44 7.41 0.00 4.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 1.066908 ACAACTTGCAACAACCCATCG 59.933 47.619 0.00 0.00 0.00 3.84
33 34 2.100584 TCACAACTTGCAACAACCCATC 59.899 45.455 0.00 0.00 0.00 3.51
39 40 7.816995 AGAAATTAGTTTCACAACTTGCAACAA 59.183 29.630 12.61 0.00 44.92 2.83
143 145 9.210426 GTAGTCACATAACGCATTTCAAATAAG 57.790 33.333 0.00 0.00 0.00 1.73
283 503 7.514573 ACCACGTATTTCACTTTTTCAAAAC 57.485 32.000 0.00 0.00 0.00 2.43
302 522 3.202001 CCCGGCAGCATAACCACG 61.202 66.667 0.00 0.00 0.00 4.94
318 538 1.796151 CCACATCACGTGCATGTCC 59.204 57.895 22.47 0.00 44.91 4.02
333 560 1.265095 CATGCATATCCAAGACGCCAC 59.735 52.381 0.00 0.00 0.00 5.01
352 579 2.000701 CCTAGGATGCCCCACCACA 61.001 63.158 1.05 0.00 37.41 4.17
400 627 0.837272 CCCTTTCGGCAGGATTCCTA 59.163 55.000 4.51 0.00 35.71 2.94
426 653 8.014070 TCAAGTCATTTATATACGGGAGTTGA 57.986 34.615 15.94 15.94 43.33 3.18
456 689 3.873952 CCTAGCCAATAAGAGCAAGACAC 59.126 47.826 0.00 0.00 0.00 3.67
472 705 1.683418 CTACCGGTGAACCCCTAGCC 61.683 65.000 19.93 0.00 0.00 3.93
511 744 0.518636 CTCATGTCACCGCAAACCTG 59.481 55.000 0.00 0.00 0.00 4.00
654 1049 0.454957 CGACCAATCAAAGCAAGGCG 60.455 55.000 0.00 0.00 0.00 5.52
715 1116 6.159293 TGTTTTAACTTTGTTGTGTCATGCA 58.841 32.000 0.00 0.00 0.00 3.96
716 1117 6.639671 TGTTTTAACTTTGTTGTGTCATGC 57.360 33.333 0.00 0.00 0.00 4.06
717 1118 7.954786 GGTTTGTTTTAACTTTGTTGTGTCATG 59.045 33.333 0.00 0.00 0.00 3.07
718 1119 7.875554 AGGTTTGTTTTAACTTTGTTGTGTCAT 59.124 29.630 0.00 0.00 0.00 3.06
719 1120 7.210873 AGGTTTGTTTTAACTTTGTTGTGTCA 58.789 30.769 0.00 0.00 0.00 3.58
720 1121 7.646446 AGGTTTGTTTTAACTTTGTTGTGTC 57.354 32.000 0.00 0.00 0.00 3.67
1017 1427 1.451567 CGGAGTCAGGAGCGGAGTA 60.452 63.158 0.00 0.00 0.00 2.59
1035 1445 3.181500 GGTTGAAATCGCCCATCTTGTAC 60.181 47.826 0.00 0.00 0.00 2.90
1065 1475 8.164733 AGCTAGCTATAGTAATCAACTGACCTA 58.835 37.037 17.69 0.00 39.39 3.08
1116 1544 4.147322 GCGTTGTCGACCATGGCG 62.147 66.667 13.04 16.58 39.71 5.69
1494 1931 4.142730 GCCATGATTGAGACTTGACACTTC 60.143 45.833 0.00 0.00 0.00 3.01
1516 1953 1.432270 GGCTGGAACTCTGTATGCGC 61.432 60.000 0.00 0.00 0.00 6.09
1629 2068 2.599677 GGTATCTCCTCCGTCTCCAAT 58.400 52.381 0.00 0.00 0.00 3.16
1725 2164 0.329596 AAAGATGAGGACTGTGGGGC 59.670 55.000 0.00 0.00 0.00 5.80
1729 2168 2.926200 CGTAGCAAAGATGAGGACTGTG 59.074 50.000 0.00 0.00 0.00 3.66
2058 2501 1.937191 TCATGTGGCAGTAGAGGACA 58.063 50.000 0.00 0.00 0.00 4.02
2138 2581 3.570212 AGGTGCCCTTGAACGCCT 61.570 61.111 0.00 0.00 41.95 5.52
2340 2783 5.240121 TCAAGAAAAGGGTAATCGGTGTAC 58.760 41.667 0.00 0.00 0.00 2.90
2364 2807 1.416772 GCCCTTAGCTAATCCTCCGTT 59.583 52.381 6.64 0.00 38.99 4.44
2365 2808 1.049402 GCCCTTAGCTAATCCTCCGT 58.951 55.000 6.64 0.00 38.99 4.69
2420 2863 7.092137 TGTCATCTCTAAATTGCATGAAAGG 57.908 36.000 0.00 0.00 0.00 3.11
2451 2894 7.441890 AAGACATACTCTATCGTAGACATGG 57.558 40.000 0.00 0.00 42.51 3.66
2507 2950 9.975218 TCCTAGCACAATATGTCTCACTATATA 57.025 33.333 0.00 0.00 0.00 0.86
2509 2952 8.164070 TCTCCTAGCACAATATGTCTCACTATA 58.836 37.037 0.00 0.00 0.00 1.31
2525 2969 9.638239 CTTATTTAAGAGATGATCTCCTAGCAC 57.362 37.037 18.29 0.00 44.42 4.40
2556 3000 6.927294 AGAAATCACAAGAAAAGACTCGTT 57.073 33.333 0.00 0.00 0.00 3.85
2559 3003 9.444534 GAAGAAAGAAATCACAAGAAAAGACTC 57.555 33.333 0.00 0.00 0.00 3.36
2584 3028 6.386927 ACATAGGATAAATGTTGAGGTGGAGA 59.613 38.462 0.00 0.00 33.83 3.71
2616 3060 9.062524 GGATATGTACAATGGTGCTATGTTAAA 57.937 33.333 0.00 0.00 0.00 1.52
2621 3308 8.097038 AGTTAGGATATGTACAATGGTGCTATG 58.903 37.037 0.00 0.00 0.00 2.23
2633 3320 6.537660 GTGAACCAACCAGTTAGGATATGTAC 59.462 42.308 6.16 0.00 41.22 2.90
2639 3326 3.910627 AGAGTGAACCAACCAGTTAGGAT 59.089 43.478 6.16 0.00 41.22 3.24
2640 3327 3.314693 AGAGTGAACCAACCAGTTAGGA 58.685 45.455 6.16 0.00 41.22 2.94
2676 3363 0.405198 TGATGGCAGAAGCTCCCAAA 59.595 50.000 0.00 0.00 41.70 3.28
2689 3376 3.624861 ACTTCTCAATCAACGATGATGGC 59.375 43.478 9.11 0.00 45.60 4.40
2760 3448 6.493458 AGCTAACACCACATAAAAACATTCCT 59.507 34.615 0.00 0.00 0.00 3.36
2787 3475 5.792712 AGATGCCCTACCATAATACAATCCT 59.207 40.000 0.00 0.00 0.00 3.24
2788 3476 6.067217 AGATGCCCTACCATAATACAATCC 57.933 41.667 0.00 0.00 0.00 3.01
2823 3511 2.537143 GTGTTCTTCCTCCCCACTCTA 58.463 52.381 0.00 0.00 0.00 2.43
2824 3512 1.353091 GTGTTCTTCCTCCCCACTCT 58.647 55.000 0.00 0.00 0.00 3.24
2825 3513 0.325272 GGTGTTCTTCCTCCCCACTC 59.675 60.000 0.00 0.00 0.00 3.51
2826 3514 1.134438 GGGTGTTCTTCCTCCCCACT 61.134 60.000 0.00 0.00 35.32 4.00
2827 3515 1.134438 AGGGTGTTCTTCCTCCCCAC 61.134 60.000 0.00 0.00 40.70 4.61
2828 3516 0.840722 GAGGGTGTTCTTCCTCCCCA 60.841 60.000 0.00 0.00 42.72 4.96
2829 3517 1.992037 GAGGGTGTTCTTCCTCCCC 59.008 63.158 0.00 0.00 42.72 4.81
2833 3521 2.111972 TGGTCTAGAGGGTGTTCTTCCT 59.888 50.000 0.00 0.00 35.82 3.36
2834 3522 2.498078 CTGGTCTAGAGGGTGTTCTTCC 59.502 54.545 0.00 0.00 0.00 3.46
2835 3523 2.498078 CCTGGTCTAGAGGGTGTTCTTC 59.502 54.545 0.00 0.00 0.00 2.87
2836 3524 2.111972 TCCTGGTCTAGAGGGTGTTCTT 59.888 50.000 0.00 0.00 0.00 2.52
2837 3525 1.717077 TCCTGGTCTAGAGGGTGTTCT 59.283 52.381 0.00 0.00 0.00 3.01
2838 3526 2.233305 TCCTGGTCTAGAGGGTGTTC 57.767 55.000 0.00 0.00 0.00 3.18
2839 3527 2.950990 ATCCTGGTCTAGAGGGTGTT 57.049 50.000 0.00 0.00 0.00 3.32
2840 3528 3.272551 AGTTATCCTGGTCTAGAGGGTGT 59.727 47.826 0.00 0.00 0.00 4.16
2841 3529 3.917300 AGTTATCCTGGTCTAGAGGGTG 58.083 50.000 0.00 0.00 0.00 4.61
2842 3530 4.628661 AAGTTATCCTGGTCTAGAGGGT 57.371 45.455 0.00 0.00 0.00 4.34
2843 3531 5.707495 AGTAAGTTATCCTGGTCTAGAGGG 58.293 45.833 0.00 0.00 0.00 4.30
2844 3532 8.943594 ATTAGTAAGTTATCCTGGTCTAGAGG 57.056 38.462 0.00 0.00 0.00 3.69
2846 3534 9.931698 TGAATTAGTAAGTTATCCTGGTCTAGA 57.068 33.333 0.00 0.00 0.00 2.43
2858 3546 9.820229 CGCTTTGTCAATTGAATTAGTAAGTTA 57.180 29.630 10.35 0.00 0.00 2.24
2859 3547 8.564574 TCGCTTTGTCAATTGAATTAGTAAGTT 58.435 29.630 10.35 0.00 0.00 2.66
2860 3548 8.094798 TCGCTTTGTCAATTGAATTAGTAAGT 57.905 30.769 10.35 0.00 0.00 2.24
2861 3549 8.840867 GTTCGCTTTGTCAATTGAATTAGTAAG 58.159 33.333 10.35 8.47 0.00 2.34
2862 3550 8.564574 AGTTCGCTTTGTCAATTGAATTAGTAA 58.435 29.630 10.35 4.35 0.00 2.24
2863 3551 8.094798 AGTTCGCTTTGTCAATTGAATTAGTA 57.905 30.769 10.35 0.00 0.00 1.82
2864 3552 6.970484 AGTTCGCTTTGTCAATTGAATTAGT 58.030 32.000 10.35 0.00 0.00 2.24
2865 3553 8.948853 TTAGTTCGCTTTGTCAATTGAATTAG 57.051 30.769 10.35 8.45 0.00 1.73
2866 3554 9.906660 ATTTAGTTCGCTTTGTCAATTGAATTA 57.093 25.926 10.35 0.00 0.00 1.40
2867 3555 8.816640 ATTTAGTTCGCTTTGTCAATTGAATT 57.183 26.923 10.35 0.00 0.00 2.17
2868 3556 8.702438 CAATTTAGTTCGCTTTGTCAATTGAAT 58.298 29.630 10.35 0.00 33.92 2.57
2869 3557 7.168972 CCAATTTAGTTCGCTTTGTCAATTGAA 59.831 33.333 10.35 0.00 33.92 2.69
2870 3558 6.640499 CCAATTTAGTTCGCTTTGTCAATTGA 59.360 34.615 3.38 3.38 33.92 2.57
2871 3559 6.128849 CCCAATTTAGTTCGCTTTGTCAATTG 60.129 38.462 0.00 0.00 32.52 2.32
2872 3560 5.925969 CCCAATTTAGTTCGCTTTGTCAATT 59.074 36.000 0.00 0.00 0.00 2.32
2873 3561 5.469479 CCCAATTTAGTTCGCTTTGTCAAT 58.531 37.500 0.00 0.00 0.00 2.57
2874 3562 4.261825 CCCCAATTTAGTTCGCTTTGTCAA 60.262 41.667 0.00 0.00 0.00 3.18
2875 3563 3.254657 CCCCAATTTAGTTCGCTTTGTCA 59.745 43.478 0.00 0.00 0.00 3.58
2876 3564 3.254903 ACCCCAATTTAGTTCGCTTTGTC 59.745 43.478 0.00 0.00 0.00 3.18
2877 3565 3.227614 ACCCCAATTTAGTTCGCTTTGT 58.772 40.909 0.00 0.00 0.00 2.83
2878 3566 3.934457 ACCCCAATTTAGTTCGCTTTG 57.066 42.857 0.00 0.00 0.00 2.77
2879 3567 4.948341 AAACCCCAATTTAGTTCGCTTT 57.052 36.364 0.00 0.00 0.00 3.51
2880 3568 4.948341 AAAACCCCAATTTAGTTCGCTT 57.052 36.364 0.00 0.00 0.00 4.68
2881 3569 4.342665 TCAAAAACCCCAATTTAGTTCGCT 59.657 37.500 0.00 0.00 0.00 4.93
2882 3570 4.446385 GTCAAAAACCCCAATTTAGTTCGC 59.554 41.667 0.00 0.00 0.00 4.70
2883 3571 4.986034 GGTCAAAAACCCCAATTTAGTTCG 59.014 41.667 0.00 0.00 42.85 3.95
2897 3585 4.124238 GGCAAGTTTTAGGGGTCAAAAAC 58.876 43.478 3.16 3.16 42.97 2.43
2898 3586 3.134985 GGGCAAGTTTTAGGGGTCAAAAA 59.865 43.478 0.00 0.00 0.00 1.94
2899 3587 2.701423 GGGCAAGTTTTAGGGGTCAAAA 59.299 45.455 0.00 0.00 0.00 2.44
2900 3588 2.321719 GGGCAAGTTTTAGGGGTCAAA 58.678 47.619 0.00 0.00 0.00 2.69
2901 3589 1.481615 GGGGCAAGTTTTAGGGGTCAA 60.482 52.381 0.00 0.00 0.00 3.18
2902 3590 0.113580 GGGGCAAGTTTTAGGGGTCA 59.886 55.000 0.00 0.00 0.00 4.02
2903 3591 0.963856 CGGGGCAAGTTTTAGGGGTC 60.964 60.000 0.00 0.00 0.00 4.46
2904 3592 1.076014 CGGGGCAAGTTTTAGGGGT 59.924 57.895 0.00 0.00 0.00 4.95
2905 3593 0.328926 TACGGGGCAAGTTTTAGGGG 59.671 55.000 0.00 0.00 0.00 4.79
2906 3594 2.092592 AGATACGGGGCAAGTTTTAGGG 60.093 50.000 0.00 0.00 0.00 3.53
2907 3595 3.277142 AGATACGGGGCAAGTTTTAGG 57.723 47.619 0.00 0.00 0.00 2.69
2908 3596 4.941873 AGAAAGATACGGGGCAAGTTTTAG 59.058 41.667 0.00 0.00 0.00 1.85
2909 3597 4.913784 AGAAAGATACGGGGCAAGTTTTA 58.086 39.130 0.00 0.00 0.00 1.52
2910 3598 3.763057 AGAAAGATACGGGGCAAGTTTT 58.237 40.909 0.00 0.00 0.00 2.43
2911 3599 3.434940 AGAAAGATACGGGGCAAGTTT 57.565 42.857 0.00 0.00 0.00 2.66
2912 3600 3.434940 AAGAAAGATACGGGGCAAGTT 57.565 42.857 0.00 0.00 0.00 2.66
2913 3601 4.772886 ATAAGAAAGATACGGGGCAAGT 57.227 40.909 0.00 0.00 0.00 3.16
2914 3602 7.745620 AAATATAAGAAAGATACGGGGCAAG 57.254 36.000 0.00 0.00 0.00 4.01
2915 3603 8.528044 AAAAATATAAGAAAGATACGGGGCAA 57.472 30.769 0.00 0.00 0.00 4.52
2937 3625 3.907894 AAGCGCACTTTATCGGAAAAA 57.092 38.095 11.47 0.00 29.41 1.94
2938 3626 3.907894 AAAGCGCACTTTATCGGAAAA 57.092 38.095 11.47 0.00 44.38 2.29
2948 3636 7.210718 ACCTTTTAAGTAATAAAGCGCACTT 57.789 32.000 11.47 12.07 35.03 3.16
2949 3637 6.812879 ACCTTTTAAGTAATAAAGCGCACT 57.187 33.333 11.47 0.00 35.03 4.40
2950 3638 7.862741 AAACCTTTTAAGTAATAAAGCGCAC 57.137 32.000 11.47 0.00 35.03 5.34
2951 3639 9.962783 TTTAAACCTTTTAAGTAATAAAGCGCA 57.037 25.926 11.47 0.00 35.03 6.09
2965 3653 9.583765 GGTTGTGTGTAATGTTTAAACCTTTTA 57.416 29.630 15.59 8.26 34.36 1.52
2966 3654 8.315482 AGGTTGTGTGTAATGTTTAAACCTTTT 58.685 29.630 15.59 9.15 42.63 2.27
2967 3655 7.842982 AGGTTGTGTGTAATGTTTAAACCTTT 58.157 30.769 15.59 11.38 42.63 3.11
2968 3656 7.340999 AGAGGTTGTGTGTAATGTTTAAACCTT 59.659 33.333 15.59 13.94 44.63 3.50
2969 3657 6.831868 AGAGGTTGTGTGTAATGTTTAAACCT 59.168 34.615 15.59 2.96 46.66 3.50
2970 3658 6.915843 CAGAGGTTGTGTGTAATGTTTAAACC 59.084 38.462 15.59 0.90 36.83 3.27
2971 3659 6.416750 GCAGAGGTTGTGTGTAATGTTTAAAC 59.583 38.462 11.54 11.54 0.00 2.01
2972 3660 6.095580 TGCAGAGGTTGTGTGTAATGTTTAAA 59.904 34.615 0.00 0.00 0.00 1.52
2973 3661 5.590663 TGCAGAGGTTGTGTGTAATGTTTAA 59.409 36.000 0.00 0.00 0.00 1.52
2974 3662 5.126779 TGCAGAGGTTGTGTGTAATGTTTA 58.873 37.500 0.00 0.00 0.00 2.01
2975 3663 3.951037 TGCAGAGGTTGTGTGTAATGTTT 59.049 39.130 0.00 0.00 0.00 2.83
2976 3664 3.550820 TGCAGAGGTTGTGTGTAATGTT 58.449 40.909 0.00 0.00 0.00 2.71
2977 3665 3.207265 TGCAGAGGTTGTGTGTAATGT 57.793 42.857 0.00 0.00 0.00 2.71
2978 3666 5.412594 AGTTATGCAGAGGTTGTGTGTAATG 59.587 40.000 0.00 0.00 0.00 1.90
2979 3667 5.412594 CAGTTATGCAGAGGTTGTGTGTAAT 59.587 40.000 0.00 0.00 0.00 1.89
2980 3668 4.754618 CAGTTATGCAGAGGTTGTGTGTAA 59.245 41.667 0.00 0.00 0.00 2.41
2981 3669 4.314961 CAGTTATGCAGAGGTTGTGTGTA 58.685 43.478 0.00 0.00 0.00 2.90
2982 3670 3.141398 CAGTTATGCAGAGGTTGTGTGT 58.859 45.455 0.00 0.00 0.00 3.72
2983 3671 2.485426 CCAGTTATGCAGAGGTTGTGTG 59.515 50.000 0.00 0.00 0.00 3.82
2984 3672 2.371841 TCCAGTTATGCAGAGGTTGTGT 59.628 45.455 0.00 0.00 0.00 3.72
2985 3673 3.057969 TCCAGTTATGCAGAGGTTGTG 57.942 47.619 0.00 0.00 0.00 3.33
2986 3674 3.788227 TTCCAGTTATGCAGAGGTTGT 57.212 42.857 0.00 0.00 0.00 3.32
2987 3675 4.520492 AGTTTTCCAGTTATGCAGAGGTTG 59.480 41.667 0.00 0.00 0.00 3.77
2988 3676 4.520492 CAGTTTTCCAGTTATGCAGAGGTT 59.480 41.667 0.00 0.00 0.00 3.50
2989 3677 4.074970 CAGTTTTCCAGTTATGCAGAGGT 58.925 43.478 0.00 0.00 0.00 3.85
2990 3678 3.441572 CCAGTTTTCCAGTTATGCAGAGG 59.558 47.826 0.00 0.00 0.00 3.69
2991 3679 4.326826 TCCAGTTTTCCAGTTATGCAGAG 58.673 43.478 0.00 0.00 0.00 3.35
2992 3680 4.326826 CTCCAGTTTTCCAGTTATGCAGA 58.673 43.478 0.00 0.00 0.00 4.26
2993 3681 3.119708 GCTCCAGTTTTCCAGTTATGCAG 60.120 47.826 0.00 0.00 0.00 4.41
2994 3682 2.819608 GCTCCAGTTTTCCAGTTATGCA 59.180 45.455 0.00 0.00 0.00 3.96
2995 3683 2.819608 TGCTCCAGTTTTCCAGTTATGC 59.180 45.455 0.00 0.00 0.00 3.14
2996 3684 5.649782 ATTGCTCCAGTTTTCCAGTTATG 57.350 39.130 0.00 0.00 0.00 1.90
2997 3685 5.185828 GGAATTGCTCCAGTTTTCCAGTTAT 59.814 40.000 0.00 0.00 44.67 1.89
2998 3686 4.522789 GGAATTGCTCCAGTTTTCCAGTTA 59.477 41.667 0.00 0.00 44.67 2.24
2999 3687 3.321968 GGAATTGCTCCAGTTTTCCAGTT 59.678 43.478 0.00 0.00 44.67 3.16
3000 3688 2.893489 GGAATTGCTCCAGTTTTCCAGT 59.107 45.455 0.00 0.00 44.67 4.00
3001 3689 3.582714 GGAATTGCTCCAGTTTTCCAG 57.417 47.619 0.00 0.00 44.67 3.86
3011 3699 0.684479 GGTTGGGAGGGAATTGCTCC 60.684 60.000 0.00 2.16 44.54 4.70
3012 3700 0.684479 GGGTTGGGAGGGAATTGCTC 60.684 60.000 0.00 0.00 0.00 4.26
3013 3701 1.149133 AGGGTTGGGAGGGAATTGCT 61.149 55.000 0.00 0.00 0.00 3.91
3014 3702 0.629058 TAGGGTTGGGAGGGAATTGC 59.371 55.000 0.00 0.00 0.00 3.56
3015 3703 1.410224 GCTAGGGTTGGGAGGGAATTG 60.410 57.143 0.00 0.00 0.00 2.32
3016 3704 0.927029 GCTAGGGTTGGGAGGGAATT 59.073 55.000 0.00 0.00 0.00 2.17
3017 3705 0.994050 GGCTAGGGTTGGGAGGGAAT 60.994 60.000 0.00 0.00 0.00 3.01
3018 3706 1.618447 GGCTAGGGTTGGGAGGGAA 60.618 63.158 0.00 0.00 0.00 3.97
3019 3707 2.042261 GGCTAGGGTTGGGAGGGA 59.958 66.667 0.00 0.00 0.00 4.20
3020 3708 3.480133 CGGCTAGGGTTGGGAGGG 61.480 72.222 0.00 0.00 0.00 4.30
3021 3709 4.176752 GCGGCTAGGGTTGGGAGG 62.177 72.222 0.00 0.00 0.00 4.30
3022 3710 4.176752 GGCGGCTAGGGTTGGGAG 62.177 72.222 0.00 0.00 0.00 4.30
3026 3714 4.176752 GAGGGGCGGCTAGGGTTG 62.177 72.222 9.56 0.00 0.00 3.77
3031 3719 4.548513 AGGAGGAGGGGCGGCTAG 62.549 72.222 9.56 0.00 0.00 3.42
3032 3720 4.541648 GAGGAGGAGGGGCGGCTA 62.542 72.222 9.56 0.00 0.00 3.93
3038 3726 4.825679 GGGGGTGAGGAGGAGGGG 62.826 77.778 0.00 0.00 0.00 4.79
3053 3741 1.627297 CGAGGAAGGGAAGAAGGGGG 61.627 65.000 0.00 0.00 0.00 5.40
3054 3742 1.908483 CGAGGAAGGGAAGAAGGGG 59.092 63.158 0.00 0.00 0.00 4.79
3055 3743 1.222113 GCGAGGAAGGGAAGAAGGG 59.778 63.158 0.00 0.00 0.00 3.95
3056 3744 1.222113 GGCGAGGAAGGGAAGAAGG 59.778 63.158 0.00 0.00 0.00 3.46
3057 3745 1.153549 CGGCGAGGAAGGGAAGAAG 60.154 63.158 0.00 0.00 0.00 2.85
3058 3746 2.978824 CGGCGAGGAAGGGAAGAA 59.021 61.111 0.00 0.00 0.00 2.52
3059 3747 3.771160 GCGGCGAGGAAGGGAAGA 61.771 66.667 12.98 0.00 0.00 2.87
3060 3748 4.840005 GGCGGCGAGGAAGGGAAG 62.840 72.222 12.98 0.00 0.00 3.46
3142 3830 4.020617 TTCCCCACGCAGAGGCAG 62.021 66.667 0.00 0.00 41.24 4.85
3143 3831 4.329545 GTTCCCCACGCAGAGGCA 62.330 66.667 0.00 0.00 41.24 4.75
3145 3833 4.410400 GGGTTCCCCACGCAGAGG 62.410 72.222 0.00 0.00 44.65 3.69
3154 3842 3.489513 CCAGATCCGGGGTTCCCC 61.490 72.222 16.52 16.52 41.57 4.81
3155 3843 2.366435 TCCAGATCCGGGGTTCCC 60.366 66.667 0.00 0.00 41.09 3.97
3156 3844 3.108288 GCTCCAGATCCGGGGTTCC 62.108 68.421 0.00 0.00 0.00 3.62
3157 3845 2.506472 GCTCCAGATCCGGGGTTC 59.494 66.667 0.00 0.00 0.00 3.62
3158 3846 3.470888 CGCTCCAGATCCGGGGTT 61.471 66.667 0.00 0.00 0.00 4.11
3175 3863 3.830192 CTTGCCAATGGAGCCGCC 61.830 66.667 2.05 0.00 37.10 6.13
3176 3864 3.830192 CCTTGCCAATGGAGCCGC 61.830 66.667 2.05 0.00 0.00 6.53
3177 3865 3.830192 GCCTTGCCAATGGAGCCG 61.830 66.667 2.05 0.00 0.00 5.52
3178 3866 2.681064 TGCCTTGCCAATGGAGCC 60.681 61.111 2.05 0.00 0.00 4.70
3179 3867 2.575461 GTGCCTTGCCAATGGAGC 59.425 61.111 2.05 0.00 0.00 4.70
3180 3868 2.703798 CCGTGCCTTGCCAATGGAG 61.704 63.158 2.05 0.00 0.00 3.86
3181 3869 2.676121 CCGTGCCTTGCCAATGGA 60.676 61.111 2.05 0.00 0.00 3.41
3182 3870 4.440127 GCCGTGCCTTGCCAATGG 62.440 66.667 0.00 0.00 0.00 3.16
3183 3871 4.440127 GGCCGTGCCTTGCCAATG 62.440 66.667 7.58 0.00 46.69 2.82
3219 3907 4.530857 GGGACGCCAGATCCACCG 62.531 72.222 0.00 0.00 38.06 4.94
3252 3940 2.125269 CAACGACCACCGGATCCC 60.125 66.667 9.46 0.00 43.93 3.85
3253 3941 2.125269 CCAACGACCACCGGATCC 60.125 66.667 9.46 0.00 43.93 3.36
3254 3942 2.818274 GCCAACGACCACCGGATC 60.818 66.667 9.46 1.08 43.93 3.36
3255 3943 4.752879 CGCCAACGACCACCGGAT 62.753 66.667 9.46 0.00 43.93 4.18
3284 3972 3.257561 CATCGACCGCCGCAGAAG 61.258 66.667 0.00 0.00 38.37 2.85
3295 3983 4.039601 CAGATCGCGCGCATCGAC 62.040 66.667 32.61 16.38 41.67 4.20
3307 3995 3.934962 GAGGGGAGGCGCCAGATC 61.935 72.222 31.54 17.95 39.05 2.75
3316 4004 3.274550 AACAGGGGAGGAGGGGAGG 62.275 68.421 0.00 0.00 0.00 4.30
3317 4005 1.690985 GAACAGGGGAGGAGGGGAG 60.691 68.421 0.00 0.00 0.00 4.30
3318 4006 2.454941 GAACAGGGGAGGAGGGGA 59.545 66.667 0.00 0.00 0.00 4.81
3319 4007 3.083997 CGAACAGGGGAGGAGGGG 61.084 72.222 0.00 0.00 0.00 4.79
3320 4008 3.083997 CCGAACAGGGGAGGAGGG 61.084 72.222 0.00 0.00 35.97 4.30
3321 4009 3.787001 GCCGAACAGGGGAGGAGG 61.787 72.222 0.00 0.00 41.48 4.30
3322 4010 2.370445 ATGCCGAACAGGGGAGGAG 61.370 63.158 0.00 0.00 41.48 3.69
3323 4011 2.285368 ATGCCGAACAGGGGAGGA 60.285 61.111 0.00 0.00 41.48 3.71
3324 4012 2.124570 CATGCCGAACAGGGGAGG 60.125 66.667 0.00 0.00 41.48 4.30
3325 4013 2.825836 GCATGCCGAACAGGGGAG 60.826 66.667 6.36 0.00 41.48 4.30
3326 4014 4.776322 CGCATGCCGAACAGGGGA 62.776 66.667 13.15 0.00 45.00 4.81


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.