AutoCloner

Multiple sequence alignment - TraesCS4D01G348400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS4D01G348400	chr4D	100.000	2738	0	0	1	2738	502067544	502064807	0.000000e+00	5057.0
1	TraesCS4D01G348400	chr4D	91.575	724	55	5	228	946	502063220	502063942	0.000000e+00	994.0
2	TraesCS4D01G348400	chr4D	86.093	942	72	31	1015	1900	502055526	502054588	0.000000e+00	959.0
3	TraesCS4D01G348400	chr4D	90.937	651	50	6	1904	2546	12610199	12609550	0.000000e+00	867.0
4	TraesCS4D01G348400	chr5A	91.319	1198	51	19	721	1878	684938654	684939838	0.000000e+00	1587.0
5	TraesCS4D01G348400	chr5A	89.184	980	71	21	4	950	661215219	661214242	0.000000e+00	1190.0
6	TraesCS4D01G348400	chr5A	93.194	764	44	6	190	950	684942033	684941275	0.000000e+00	1116.0
7	TraesCS4D01G348400	chr5A	88.565	927	66	27	1015	1902	684704700	684703775	0.000000e+00	1088.0
8	TraesCS4D01G348400	chr5A	87.921	356	43	0	373	728	684759984	684760339	1.170000e-113	420.0
9	TraesCS4D01G348400	chr5A	79.361	407	58	21	1	385	684757922	684758324	2.090000e-66	263.0
10	TraesCS4D01G348400	chr5A	96.364	55	2	0	4	58	684942361	684942307	1.040000e-14	91.6
11	TraesCS4D01G348400	chr4B	89.643	1120	55	23	794	1878	646182389	646183482	0.000000e+00	1369.0
12	TraesCS4D01G348400	chr4B	89.969	977	67	10	4	950	646188249	646187274	0.000000e+00	1232.0
13	TraesCS4D01G348400	chr4B	88.690	893	74	14	1015	1884	646146644	646145756	0.000000e+00	1064.0
14	TraesCS4D01G348400	chr4B	93.310	568	38	0	1015	1582	646175235	646174668	0.000000e+00	839.0
15	TraesCS4D01G348400	chr4B	90.040	251	22	2	549	797	646178588	646178837	3.400000e-84	322.0
16	TraesCS4D01G348400	chr4B	78.834	326	27	10	1598	1881	646162631	646162306	6.020000e-42	182.0
17	TraesCS4D01G348400	chr4B	100.000	30	0	0	2674	2703	653966781	653966752	3.810000e-04	56.5
18	TraesCS4D01G348400	chr7A	88.228	790	82	9	1906	2686	104724942	104725729	0.000000e+00	933.0
19	TraesCS4D01G348400	chr2D	92.403	645	42	6	1907	2546	30355182	30355824	0.000000e+00	913.0
20	TraesCS4D01G348400	chr3D	91.846	650	45	7	1904	2548	11422411	11421765	0.000000e+00	900.0
21	TraesCS4D01G348400	chr3D	91.667	648	46	6	1906	2548	581791739	581792383	0.000000e+00	891.0
22	TraesCS4D01G348400	chr3D	86.029	136	13	4	2538	2669	346127506	346127639	1.020000e-29	141.0
23	TraesCS4D01G348400	chr6D	91.499	647	49	6	1907	2548	445039460	445040105	0.000000e+00	885.0
24	TraesCS4D01G348400	chr5D	91.371	649	51	4	1905	2548	60468968	60469616	0.000000e+00	883.0
25	TraesCS4D01G348400	chr5D	91.331	646	51	4	1908	2548	41696389	41695744	0.000000e+00	878.0
26	TraesCS4D01G348400	chr5B	90.965	653	54	4	1901	2548	595134541	595135193	0.000000e+00	874.0
27	TraesCS4D01G348400	chrUn	90.040	251	22	2	549	797	391312806	391312557	3.400000e-84	322.0
28	TraesCS4D01G348400	chr6B	84.158	202	28	3	2538	2736	205119006	205119206	2.780000e-45	193.0
29	TraesCS4D01G348400	chr6B	85.507	138	17	3	2551	2686	221086532	221086668	1.020000e-29	141.0
30	TraesCS4D01G348400	chr6B	95.745	47	2	0	2654	2700	719306454	719306500	2.920000e-10	76.8
31	TraesCS4D01G348400	chr1A	90.351	114	9	2	2551	2662	418919725	418919612	6.110000e-32	148.0
32	TraesCS4D01G348400	chr1A	89.381	113	10	2	2551	2661	427036394	427036282	1.020000e-29	141.0
33	TraesCS4D01G348400	chr3B	84.828	145	18	4	2551	2693	810902782	810902640	2.840000e-30	143.0
34	TraesCS4D01G348400	chr7B	85.507	138	17	3	2551	2686	666582159	666582023	1.020000e-29	141.0
35	TraesCS4D01G348400	chr1B	85.950	121	14	3	2551	2669	616604493	616604612	2.860000e-25	126.0
36	TraesCS4D01G348400	chr1D	95.833	48	2	0	2654	2701	208753082	208753035	8.130000e-11	78.7
37	TraesCS4D01G348400	chr7D	100.000	28	0	0	2674	2701	34071477	34071450	5.000000e-03	52.8
38	TraesCS4D01G348400	chr7D	83.607	61	4	6	1250	1310	538603023	538603077	5.000000e-03	52.8

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS4D01G348400	chr4D	502064807	502067544	2737	True	5057.0	5057	100.0000	1	2738	1	chr4D.!!$R3	2737
1	TraesCS4D01G348400	chr4D	502063220	502063942	722	False	994.0	994	91.5750	228	946	1	chr4D.!!$F1	718
2	TraesCS4D01G348400	chr4D	502054588	502055526	938	True	959.0	959	86.0930	1015	1900	1	chr4D.!!$R2	885
3	TraesCS4D01G348400	chr4D	12609550	12610199	649	True	867.0	867	90.9370	1904	2546	1	chr4D.!!$R1	642
4	TraesCS4D01G348400	chr5A	684938654	684939838	1184	False	1587.0	1587	91.3190	721	1878	1	chr5A.!!$F1	1157
5	TraesCS4D01G348400	chr5A	661214242	661215219	977	True	1190.0	1190	89.1840	4	950	1	chr5A.!!$R1	946
6	TraesCS4D01G348400	chr5A	684703775	684704700	925	True	1088.0	1088	88.5650	1015	1902	1	chr5A.!!$R2	887
7	TraesCS4D01G348400	chr5A	684941275	684942361	1086	True	603.8	1116	94.7790	4	950	2	chr5A.!!$R3	946
8	TraesCS4D01G348400	chr5A	684757922	684760339	2417	False	341.5	420	83.6410	1	728	2	chr5A.!!$F2	727
9	TraesCS4D01G348400	chr4B	646187274	646188249	975	True	1232.0	1232	89.9690	4	950	1	chr4B.!!$R4	946
10	TraesCS4D01G348400	chr4B	646145756	646146644	888	True	1064.0	1064	88.6900	1015	1884	1	chr4B.!!$R1	869
11	TraesCS4D01G348400	chr4B	646178588	646183482	4894	False	845.5	1369	89.8415	549	1878	2	chr4B.!!$F1	1329
12	TraesCS4D01G348400	chr4B	646174668	646175235	567	True	839.0	839	93.3100	1015	1582	1	chr4B.!!$R3	567
13	TraesCS4D01G348400	chr7A	104724942	104725729	787	False	933.0	933	88.2280	1906	2686	1	chr7A.!!$F1	780
14	TraesCS4D01G348400	chr2D	30355182	30355824	642	False	913.0	913	92.4030	1907	2546	1	chr2D.!!$F1	639
15	TraesCS4D01G348400	chr3D	11421765	11422411	646	True	900.0	900	91.8460	1904	2548	1	chr3D.!!$R1	644
16	TraesCS4D01G348400	chr3D	581791739	581792383	644	False	891.0	891	91.6670	1906	2548	1	chr3D.!!$F2	642
17	TraesCS4D01G348400	chr6D	445039460	445040105	645	False	885.0	885	91.4990	1907	2548	1	chr6D.!!$F1	641
18	TraesCS4D01G348400	chr5D	60468968	60469616	648	False	883.0	883	91.3710	1905	2548	1	chr5D.!!$F1	643
19	TraesCS4D01G348400	chr5D	41695744	41696389	645	True	878.0	878	91.3310	1908	2548	1	chr5D.!!$R1	640
20	TraesCS4D01G348400	chr5B	595134541	595135193	652	False	874.0	874	90.9650	1901	2548	1	chr5B.!!$F1	647

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
494	2334	0.689623	AGTGCAGGGAGAAGGTTCTG	59.31	55.0	0.0	0.0	37.73	3.02	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2149	7683	1.342574	TGGTGAGTGACCCATATCCGA	60.343	52.381	0.0	0.0	45.45	4.55	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
49	50	9.765795	AATATCCAACTACAAGTATCTTGCTAC	57.234	33.333	9.06	0.00	0.00	3.58
63	64	3.066900	TCTTGCTACGATTCTAGACTGGC	59.933	47.826	0.00	0.00	0.00	4.85
72	75	5.303078	ACGATTCTAGACTGGCAATATCAGT	59.697	40.000	0.00	0.00	46.82	3.41
84	87	6.851609	TGGCAATATCAGTACACACATTTTC	58.148	36.000	0.00	0.00	0.00	2.29
154	285	6.475076	TGCACAATATGTTCAAACTTTGTGTC	59.525	34.615	22.61	18.42	41.46	3.67
168	326	4.881273	ACTTTGTGTCACACTCATTGCTTA	59.119	37.500	9.90	0.00	35.11	3.09
169	327	5.008019	ACTTTGTGTCACACTCATTGCTTAG	59.992	40.000	9.90	0.00	35.11	2.18
170	328	4.071961	TGTGTCACACTCATTGCTTAGT	57.928	40.909	9.90	0.00	35.11	2.24
220	386	2.406596	ACCATTGCATGCCATTTTCC	57.593	45.000	16.68	0.00	0.00	3.13
236	402	6.455647	CCATTTTCCTTAGTCCTTTTTGTCC	58.544	40.000	0.00	0.00	0.00	4.02
493	2333	2.327325	TAGTGCAGGGAGAAGGTTCT	57.673	50.000	0.00	0.00	41.00	3.01
494	2334	0.689623	AGTGCAGGGAGAAGGTTCTG	59.310	55.000	0.00	0.00	37.73	3.02
538	2378	1.135139	GAGGAGTCTGCATCTAACGCA	59.865	52.381	0.00	0.00	37.88	5.24
562	2402	2.432300	CCTGGCCGATAGTCCCGTT	61.432	63.158	0.00	0.00	0.00	4.44
862	6263	2.352127	GGTGAATGGAACTTTGCTGCTC	60.352	50.000	0.00	0.00	0.00	4.26
899	6300	6.788598	AGCATCTTATCTTCTCTGTCTGAA	57.211	37.500	0.00	0.00	0.00	3.02
915	6322	2.376518	TCTGAAGATTTGTGGCCTCCTT	59.623	45.455	3.32	0.00	0.00	3.36
995	6421	2.647356	GCTCCTGCGCTCTCCTATA	58.353	57.895	9.73	0.00	0.00	1.31
997	6423	0.885196	CTCCTGCGCTCTCCTATACC	59.115	60.000	9.73	0.00	0.00	2.73
1348	6789	3.154584	AACTTGTTCGTCGCCGGGA	62.155	57.895	2.18	0.00	33.95	5.14
1383	6824	0.996762	TGGTCCACCAACTCCCCTTT	60.997	55.000	0.00	0.00	44.35	3.11
1387	6828	0.184933	CCACCAACTCCCCTTTGACA	59.815	55.000	0.00	0.00	0.00	3.58
1559	7000	3.425713	CGACGTCGACGAGGGGAA	61.426	66.667	41.52	0.00	43.02	3.97
1632	7073	2.668550	GTCAGGGTGCCCGTTGTC	60.669	66.667	0.98	0.00	41.95	3.18
1652	7102	3.055580	GCTATCAGCGGGAGAGGG	58.944	66.667	5.44	0.00	35.35	4.30
1662	7112	0.105778	CGGGAGAGGGAGAAGAATGC	59.894	60.000	0.00	0.00	0.00	3.56
1716	7201	2.232298	CTGCGGAGGAGGAGGTTGAC	62.232	65.000	0.00	0.00	44.33	3.18
1732	7217	0.249953	TGACGCCGAAGCTGGTAAAA	60.250	50.000	0.00	0.00	36.60	1.52
1791	7281	4.336433	CACCAGCCATGTGGAATTAACTAG	59.664	45.833	9.25	0.00	40.44	2.57
1792	7282	3.316308	CCAGCCATGTGGAATTAACTAGC	59.684	47.826	2.55	0.00	40.44	3.42
1793	7283	4.202441	CAGCCATGTGGAATTAACTAGCT	58.798	43.478	2.55	0.00	37.39	3.32
1794	7284	5.368145	CAGCCATGTGGAATTAACTAGCTA	58.632	41.667	2.55	0.00	37.39	3.32
1795	7285	6.000219	CAGCCATGTGGAATTAACTAGCTAT	59.000	40.000	2.55	0.00	37.39	2.97
1797	7287	6.043706	AGCCATGTGGAATTAACTAGCTATCT	59.956	38.462	2.55	0.00	37.39	1.98
1798	7288	6.712547	GCCATGTGGAATTAACTAGCTATCTT	59.287	38.462	2.55	0.00	37.39	2.40
1799	7289	7.308229	GCCATGTGGAATTAACTAGCTATCTTG	60.308	40.741	2.55	0.00	37.39	3.02
1800	7290	7.308229	CCATGTGGAATTAACTAGCTATCTTGC	60.308	40.741	0.00	0.00	37.39	4.01
1856	7379	4.401022	TGCTGTGAAGGAGAAACAATGAT	58.599	39.130	0.00	0.00	0.00	2.45
1871	7394	9.507329	AGAAACAATGATAATACACACAGTTCT	57.493	29.630	0.00	0.00	0.00	3.01
1974	7503	6.462552	TGCATGCAGCCACTTTATTAATTA	57.537	33.333	18.46	0.00	44.83	1.40
2019	7550	9.953565	AAATAATACAACAGTAAGACTAGCCAA	57.046	29.630	0.00	0.00	0.00	4.52
2026	7557	4.948621	ACAGTAAGACTAGCCAACGTCTAT	59.051	41.667	0.00	0.00	39.44	1.98
2069	7600	2.669781	TCCAATTGATGAAGGGATGCC	58.330	47.619	7.12	0.00	0.00	4.40
2111	7645	0.395586	ACAGACCTTGCAGCCAAACA	60.396	50.000	0.00	0.00	0.00	2.83
2423	7958	3.283684	CGCACCGCTCCACCAAAA	61.284	61.111	0.00	0.00	0.00	2.44
2442	7977	1.272554	AAATCCGTCCTCTGGTCCCC	61.273	60.000	0.00	0.00	0.00	4.81
2443	7978	2.182858	AATCCGTCCTCTGGTCCCCT	62.183	60.000	0.00	0.00	0.00	4.79
2531	8069	3.006967	CCGATCATCCGATCTAGGGTTTT	59.993	47.826	0.00	0.00	45.11	2.43
2532	8070	4.503296	CCGATCATCCGATCTAGGGTTTTT	60.503	45.833	0.00	0.00	45.11	1.94
2555	8093	3.023946	CGAAGGTAGCAGATCAGGATG	57.976	52.381	0.00	0.00	37.54	3.51
2570	8108	2.832931	GATGGAATCCGCAGATCCG	58.167	57.895	0.00	0.00	37.38	4.18
2573	8111	2.108976	GAATCCGCAGATCCGCCA	59.891	61.111	0.00	0.00	0.00	5.69
2589	8127	2.661537	CAAGCTGCCGACGTGTCA	60.662	61.111	0.00	0.00	0.00	3.58
2600	8138	2.306255	GACGTGTCACACCCACCACT	62.306	60.000	1.24	0.00	0.00	4.00
2624	8164	4.796231	CGCGACCCGGAGACCAAG	62.796	72.222	0.73	0.00	0.00	3.61
2629	8169	3.411517	CCCGGAGACCAAGCCCAT	61.412	66.667	0.73	0.00	0.00	4.00
2715	8255	4.166011	GCCGTCATTGGCGACTGC	62.166	66.667	13.09	3.26	46.75	4.40
2716	8256	3.853330	CCGTCATTGGCGACTGCG	61.853	66.667	13.09	0.00	44.10	5.18
2717	8257	2.809174	CGTCATTGGCGACTGCGA	60.809	61.111	4.25	0.00	44.10	5.10
2733	8273	3.234730	GACGCCCCCGATGGAGAT	61.235	66.667	1.26	0.00	38.29	2.75
2734	8274	3.227792	GACGCCCCCGATGGAGATC	62.228	68.421	1.26	0.00	38.29	2.75
2735	8275	4.008933	CGCCCCCGATGGAGATCC	62.009	72.222	0.00	0.00	35.39	3.36
2736	8276	4.008933	GCCCCCGATGGAGATCCG	62.009	72.222	0.00	0.00	39.43	4.18
2737	8277	3.314331	CCCCCGATGGAGATCCGG	61.314	72.222	0.00	0.00	42.64	5.14

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
2	3	1.780503	ACCTCAAAGTTGCAAAGGCT	58.219	45.000	13.02	0.00	41.91	4.58
49	50	5.777802	ACTGATATTGCCAGTCTAGAATCG	58.222	41.667	0.00	0.00	40.55	3.34
63	64	5.965334	GGCGAAAATGTGTGTACTGATATTG	59.035	40.000	0.00	0.00	0.00	1.90
72	75	3.472652	AGAACTGGCGAAAATGTGTGTA	58.527	40.909	0.00	0.00	0.00	2.90
84	87	8.095169	ACCTATTCCTATATTTAAGAACTGGCG	58.905	37.037	0.00	0.00	0.00	5.69
154	285	6.017109	ACCAAAGTAACTAAGCAATGAGTGTG	60.017	38.462	0.00	0.00	0.00	3.82
204	370	4.141869	GGACTAAGGAAAATGGCATGCAAT	60.142	41.667	21.36	11.73	0.00	3.56
220	386	6.649557	ACTGTATTCGGACAAAAAGGACTAAG	59.350	38.462	0.00	0.00	0.00	2.18
236	402	1.386748	CAGCGTCACACACTGTATTCG	59.613	52.381	0.00	0.00	0.00	3.34
431	2271	1.432270	GCGCCAGCCTCTTGTGATAC	61.432	60.000	0.00	0.00	37.42	2.24
493	2333	3.930229	CGAGAAACGGGATGTGTAATTCA	59.070	43.478	0.00	0.00	38.46	2.57
494	2334	4.032558	GTCGAGAAACGGGATGTGTAATTC	59.967	45.833	0.00	0.00	42.82	2.17
538	2378	2.249139	GGACTATCGGCCAGGACTATT	58.751	52.381	2.24	0.00	0.00	1.73
562	2402	3.151710	CCCGATGGCTCCACGGTA	61.152	66.667	20.30	0.00	44.34	4.02
862	6263	7.551585	AGATAAGATGCTACAAATATCCCTCG	58.448	38.462	0.00	0.00	0.00	4.63
899	6300	2.962859	ACAAAAGGAGGCCACAAATCT	58.037	42.857	5.01	0.00	0.00	2.40
915	6322	2.672098	ACATGGCTGGGTGTTTACAAA	58.328	42.857	0.00	0.00	0.00	2.83
992	6418	1.152504	TCCGACGCCATGGGGTATA	60.153	57.895	32.26	18.32	41.41	1.47
1383	6824	2.522436	AACCCGTCGGAGGTGTCA	60.522	61.111	14.39	0.00	37.78	3.58
1387	6828	3.308705	GTGGAACCCGTCGGAGGT	61.309	66.667	14.39	0.51	40.14	3.85
1559	7000	3.688159	GGTACGTGCCGGTCCACT	61.688	66.667	7.01	0.00	33.60	4.00
1652	7102	2.553172	GCATCATCCTGGCATTCTTCTC	59.447	50.000	0.00	0.00	0.00	2.87
1662	7112	2.537560	GGCGTTCGCATCATCCTGG	61.538	63.158	18.46	0.00	0.00	4.45
1732	7217	2.483188	GGGACAACGCCGAGATCTAATT	60.483	50.000	0.00	0.00	0.00	1.40
1787	7277	5.174395	CAACACTTGAGCAAGATAGCTAGT	58.826	41.667	16.47	0.00	46.75	2.57
1791	7281	2.485426	TGCAACACTTGAGCAAGATAGC	59.515	45.455	16.47	13.50	40.79	2.97
1792	7282	4.754372	TTGCAACACTTGAGCAAGATAG	57.246	40.909	16.47	8.42	42.71	2.08
1798	7288	5.512753	TCTTTTATTGCAACACTTGAGCA	57.487	34.783	0.00	0.00	36.32	4.26
1799	7289	7.412137	AAATCTTTTATTGCAACACTTGAGC	57.588	32.000	0.00	0.00	0.00	4.26
1995	7524	7.705325	CGTTGGCTAGTCTTACTGTTGTATTAT	59.295	37.037	0.00	0.00	0.00	1.28
2019	7550	2.530177	CGACAGATGTTGCATAGACGT	58.470	47.619	0.00	0.00	0.00	4.34
2149	7683	1.342574	TGGTGAGTGACCCATATCCGA	60.343	52.381	0.00	0.00	45.45	4.55
2153	7687	2.119495	GGACTGGTGAGTGACCCATAT	58.881	52.381	0.00	0.00	45.45	1.78
2312	7847	4.335647	ACTTGCGCAGGAGGGTGG	62.336	66.667	27.58	5.47	0.00	4.61
2423	7958	2.297937	GGGACCAGAGGACGGATTT	58.702	57.895	0.00	0.00	0.00	2.17
2442	7977	1.544246	TGGAGGTACACACGTGATCAG	59.456	52.381	25.01	11.25	0.00	2.90
2443	7978	1.623163	TGGAGGTACACACGTGATCA	58.377	50.000	25.01	2.84	0.00	2.92
2531	8069	1.757118	CTGATCTGCTACCTTCGGGAA	59.243	52.381	0.00	0.00	38.77	3.97
2532	8070	1.403814	CTGATCTGCTACCTTCGGGA	58.596	55.000	0.00	0.00	38.77	5.14
2555	8093	2.666526	GGCGGATCTGCGGATTCC	60.667	66.667	20.09	11.13	35.06	3.01
2573	8111	2.661866	GTGACACGTCGGCAGCTT	60.662	61.111	0.00	0.00	0.00	3.74
2589	8127	4.250305	GTCGGCAGTGGTGGGTGT	62.250	66.667	0.00	0.00	0.00	4.16
2629	8169	4.113815	CCGATCTGGGCCCAAGCA	62.114	66.667	28.29	13.43	42.56	3.91
2655	8195	4.114997	CATCACCGGTTTGGCGGC	62.115	66.667	2.97	0.00	43.94	6.53
2699	8239	3.853330	CGCAGTCGCCAATGACGG	61.853	66.667	0.00	0.00	43.70	4.79
2700	8240	2.809174	TCGCAGTCGCCAATGACG	60.809	61.111	0.00	0.00	43.70	4.35
2701	8241	2.778679	GTCGCAGTCGCCAATGAC	59.221	61.111	0.00	0.00	39.21	3.06
2702	8242	2.809174	CGTCGCAGTCGCCAATGA	60.809	61.111	0.00	0.00	35.26	2.57
2716	8256	3.227792	GATCTCCATCGGGGGCGTC	62.228	68.421	0.00	0.00	33.18	5.19
2717	8257	3.234730	GATCTCCATCGGGGGCGT	61.235	66.667	0.00	0.00	33.18	5.68
2718	8258	4.008933	GGATCTCCATCGGGGGCG	62.009	72.222	0.00	0.00	33.18	6.13
2719	8259	4.008933	CGGATCTCCATCGGGGGC	62.009	72.222	0.00	0.00	33.18	5.80
2720	8260	3.314331	CCGGATCTCCATCGGGGG	61.314	72.222	0.00	0.00	43.06	5.40

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.