Multiple sequence alignment - TraesCS4D01G347000

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G347000 chr4D 100.000 4425 0 0 1 4425 500824097 500819673 0.000000e+00 8172.0
1 TraesCS4D01G347000 chr4D 88.163 245 25 4 598 840 51076098 51076340 5.600000e-74 289.0
2 TraesCS4D01G347000 chr4D 86.486 259 32 3 592 849 394302098 394301842 9.370000e-72 281.0
3 TraesCS4D01G347000 chr4D 90.968 155 12 2 1645 1797 74079351 74079505 1.610000e-49 207.0
4 TraesCS4D01G347000 chr4D 97.015 67 2 0 2865 2931 500821182 500821116 3.620000e-21 113.0
5 TraesCS4D01G347000 chr4D 97.015 67 2 0 2916 2982 500821233 500821167 3.620000e-21 113.0
6 TraesCS4D01G347000 chr5A 93.685 2011 79 10 1885 3889 683349867 683351835 0.000000e+00 2966.0
7 TraesCS4D01G347000 chr5A 95.364 755 22 7 897 1641 683349052 683349803 0.000000e+00 1188.0
8 TraesCS4D01G347000 chr5A 89.980 499 35 8 1 490 683343863 683344355 8.080000e-177 630.0
9 TraesCS4D01G347000 chr5A 97.808 365 7 1 3891 4255 683351895 683352258 2.900000e-176 628.0
10 TraesCS4D01G347000 chr5A 98.256 172 3 0 4254 4425 683352216 683352387 7.190000e-78 302.0
11 TraesCS4D01G347000 chr5A 88.703 239 25 2 600 838 493864343 493864107 1.560000e-74 291.0
12 TraesCS4D01G347000 chr5A 97.015 67 2 0 2865 2931 683350875 683350941 3.620000e-21 113.0
13 TraesCS4D01G347000 chr4B 93.376 2008 88 15 1888 3887 644788300 644786330 0.000000e+00 2929.0
14 TraesCS4D01G347000 chr4B 91.562 1114 54 19 562 1646 644789464 644788362 0.000000e+00 1500.0
15 TraesCS4D01G347000 chr4B 90.067 594 30 16 1 575 644790145 644789562 0.000000e+00 743.0
16 TraesCS4D01G347000 chr4B 96.175 366 10 4 3891 4255 644786268 644785906 2.950000e-166 595.0
17 TraesCS4D01G347000 chr4B 95.930 172 7 0 4254 4425 644785948 644785777 3.370000e-71 279.0
18 TraesCS4D01G347000 chr4B 87.190 242 29 2 599 840 447455224 447455463 1.570000e-69 274.0
19 TraesCS4D01G347000 chr4B 90.789 76 7 0 554 629 644789539 644789464 7.830000e-18 102.0
20 TraesCS4D01G347000 chr4B 95.238 63 3 0 1793 1855 644788362 644788300 2.820000e-17 100.0
21 TraesCS4D01G347000 chr4B 95.918 49 2 0 2934 2982 644787326 644787278 3.670000e-11 80.5
22 TraesCS4D01G347000 chr2B 88.583 254 25 3 591 844 636775370 636775619 5.560000e-79 305.0
23 TraesCS4D01G347000 chr3A 89.256 242 24 2 600 840 63180775 63180535 7.190000e-78 302.0
24 TraesCS4D01G347000 chr3A 90.446 157 14 1 1642 1797 582283212 582283368 5.800000e-49 206.0
25 TraesCS4D01G347000 chr1B 87.008 254 29 4 593 845 589055911 589055661 2.610000e-72 283.0
26 TraesCS4D01G347000 chr1B 86.770 257 29 5 593 848 553450028 553450280 9.370000e-72 281.0
27 TraesCS4D01G347000 chr4A 87.190 242 29 2 599 840 674523633 674523394 1.570000e-69 274.0
28 TraesCS4D01G347000 chr6A 90.506 158 14 1 1640 1796 411770248 411770405 1.610000e-49 207.0
29 TraesCS4D01G347000 chr6A 100.000 37 0 0 3137 3173 617624893 617624857 7.940000e-08 69.4
30 TraesCS4D01G347000 chr3D 90.506 158 11 4 1642 1795 315480421 315480578 5.800000e-49 206.0
31 TraesCS4D01G347000 chr3D 90.446 157 14 1 1642 1797 441388664 441388820 5.800000e-49 206.0
32 TraesCS4D01G347000 chr7A 89.571 163 14 3 1642 1801 511930688 511930526 2.090000e-48 204.0
33 TraesCS4D01G347000 chr7A 88.957 163 16 2 1643 1803 113028227 113028389 2.700000e-47 200.0
34 TraesCS4D01G347000 chr6D 90.000 160 13 3 1640 1796 303059848 303060007 2.090000e-48 204.0
35 TraesCS4D01G347000 chr6D 93.478 46 3 0 510 555 292400987 292401032 7.940000e-08 69.4
36 TraesCS4D01G347000 chr2A 90.385 156 14 1 1642 1796 79316002 79316157 2.090000e-48 204.0
37 TraesCS4D01G347000 chr6B 97.297 37 1 0 3137 3173 720746621 720746657 3.690000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G347000 chr4D 500819673 500824097 4424 True 2799.333333 8172 98.010000 1 4425 3 chr4D.!!$R2 4424
1 TraesCS4D01G347000 chr5A 683349052 683352387 3335 False 1039.400000 2966 96.425600 897 4425 5 chr5A.!!$F2 3528
2 TraesCS4D01G347000 chr4B 644785777 644790145 4368 True 791.062500 2929 93.631875 1 4425 8 chr4B.!!$R1 4424

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
229 233 0.036164 AGTGCTGCCATTGTCCGTAA 59.964 50.000 0.0 0.0 0.00 3.18 F
690 819 0.179004 TTGACGTGGGATGGCAACTT 60.179 50.000 0.0 0.0 37.61 2.66 F
809 938 0.885196 GTTCGGGTTGCCATGCTTAA 59.115 50.000 0.0 0.0 0.00 1.85 F
1740 1901 1.202639 TGTTCACTCATTGCAGTCCGT 60.203 47.619 0.0 0.0 0.00 4.69 F
2876 3051 0.036010 ACCCTCTTCATCGTTGCAGG 60.036 55.000 0.0 0.0 0.00 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1577 1738 0.463295 CTAGCAGCAGACATGGGTGG 60.463 60.000 0.0 0.0 34.47 4.61 R
1720 1881 1.202639 ACGGACTGCAATGAGTGAACA 60.203 47.619 0.0 0.0 0.00 3.18 R
1790 1951 1.348036 AGCAACCCACACTTCTACTCC 59.652 52.381 0.0 0.0 0.00 3.85 R
2887 3062 0.036388 GTGCTTCAGTCCCCGATGAA 60.036 55.000 0.0 0.0 34.41 2.57 R
3755 3930 0.314935 CAGCCCACATTTCAAAGCGT 59.685 50.000 0.0 0.0 0.00 5.07 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
80 81 1.822990 CATTGACTGATTGCCCTTGCT 59.177 47.619 0.00 0.00 38.71 3.91
127 131 4.627467 CGCAGGCGCTCTTAGATTATTTAT 59.373 41.667 7.64 0.00 35.30 1.40
139 143 8.378565 TCTTAGATTATTTATCTGGCAGGGAAG 58.621 37.037 15.73 2.78 43.52 3.46
140 144 5.885465 AGATTATTTATCTGGCAGGGAAGG 58.115 41.667 15.73 0.00 42.11 3.46
142 146 0.926293 TTTATCTGGCAGGGAAGGGG 59.074 55.000 15.73 0.00 0.00 4.79
158 162 2.677848 GGAAGGGAAGGGTGGAGC 59.322 66.667 0.00 0.00 0.00 4.70
177 181 4.064388 GAGCTTGCCCAGATTAATCTCTC 58.936 47.826 15.24 12.44 34.22 3.20
178 182 3.715834 AGCTTGCCCAGATTAATCTCTCT 59.284 43.478 15.24 2.71 34.22 3.10
225 229 2.338577 AGATAGTGCTGCCATTGTCC 57.661 50.000 0.00 0.00 0.00 4.02
226 230 0.940126 GATAGTGCTGCCATTGTCCG 59.060 55.000 0.00 0.00 0.00 4.79
227 231 0.253044 ATAGTGCTGCCATTGTCCGT 59.747 50.000 0.00 0.00 0.00 4.69
229 233 0.036164 AGTGCTGCCATTGTCCGTAA 59.964 50.000 0.00 0.00 0.00 3.18
230 234 1.094785 GTGCTGCCATTGTCCGTAAT 58.905 50.000 0.00 0.00 0.00 1.89
231 235 1.093972 TGCTGCCATTGTCCGTAATG 58.906 50.000 0.00 0.00 37.70 1.90
233 237 0.381801 CTGCCATTGTCCGTAATGCC 59.618 55.000 0.00 0.00 36.86 4.40
239 243 2.552599 TTGTCCGTAATGCCTTGTCA 57.447 45.000 0.00 0.00 0.00 3.58
267 271 3.685139 TTCTTGGCTCTGTAGTGGAAG 57.315 47.619 0.00 0.00 0.00 3.46
268 272 2.609747 TCTTGGCTCTGTAGTGGAAGT 58.390 47.619 0.00 0.00 0.00 3.01
269 273 2.300152 TCTTGGCTCTGTAGTGGAAGTG 59.700 50.000 0.00 0.00 0.00 3.16
270 274 0.976641 TGGCTCTGTAGTGGAAGTGG 59.023 55.000 0.00 0.00 0.00 4.00
271 275 1.267121 GGCTCTGTAGTGGAAGTGGA 58.733 55.000 0.00 0.00 0.00 4.02
272 276 1.623811 GGCTCTGTAGTGGAAGTGGAA 59.376 52.381 0.00 0.00 0.00 3.53
273 277 2.613223 GGCTCTGTAGTGGAAGTGGAAC 60.613 54.545 0.00 0.00 0.00 3.62
274 278 2.927014 GCTCTGTAGTGGAAGTGGAACG 60.927 54.545 0.00 0.00 45.86 3.95
321 325 8.934023 AACTTGTAAGGTTTCTGAATAATCCA 57.066 30.769 0.00 0.00 0.00 3.41
348 352 3.164026 CCGGCAGGTTTAAGGTACC 57.836 57.895 2.73 2.73 35.85 3.34
372 380 3.755378 GAGTTGTGACAAGAGGCATGATT 59.245 43.478 0.00 0.00 0.00 2.57
374 382 3.421919 TGTGACAAGAGGCATGATTGA 57.578 42.857 0.00 0.00 0.00 2.57
395 403 1.656441 GCTTCTGTGTGCCAGGTTG 59.344 57.895 0.00 0.00 41.83 3.77
408 416 4.022068 GTGCCAGGTTGAGATGAAAATGAA 60.022 41.667 0.00 0.00 0.00 2.57
409 417 4.773674 TGCCAGGTTGAGATGAAAATGAAT 59.226 37.500 0.00 0.00 0.00 2.57
410 418 5.107133 GCCAGGTTGAGATGAAAATGAATG 58.893 41.667 0.00 0.00 0.00 2.67
411 419 5.337009 GCCAGGTTGAGATGAAAATGAATGT 60.337 40.000 0.00 0.00 0.00 2.71
412 420 6.097356 CCAGGTTGAGATGAAAATGAATGTG 58.903 40.000 0.00 0.00 0.00 3.21
413 421 6.294899 CCAGGTTGAGATGAAAATGAATGTGT 60.295 38.462 0.00 0.00 0.00 3.72
415 423 8.298854 CAGGTTGAGATGAAAATGAATGTGTTA 58.701 33.333 0.00 0.00 0.00 2.41
416 424 8.859090 AGGTTGAGATGAAAATGAATGTGTTAA 58.141 29.630 0.00 0.00 0.00 2.01
442 456 3.884091 AGAGAGATGAAAATGCAGGCATC 59.116 43.478 7.29 10.94 37.88 3.91
531 549 5.408909 GGTTAGTTTCTGCTCTGTCCTTTAC 59.591 44.000 0.00 0.00 0.00 2.01
537 555 1.003118 TGCTCTGTCCTTTACCGCATT 59.997 47.619 0.00 0.00 0.00 3.56
561 579 5.953548 TGATGGATTCAATTTCAGTGGTCAT 59.046 36.000 0.00 0.00 0.00 3.06
587 649 8.870075 ATGCAGATTCTTTAACCCCTATTATC 57.130 34.615 0.00 0.00 0.00 1.75
605 667 8.001292 CCTATTATCTGAAAAATGAAGGACCCT 58.999 37.037 0.00 0.00 0.00 4.34
612 674 7.895429 TCTGAAAAATGAAGGACCCTGATAAAT 59.105 33.333 0.00 0.00 0.00 1.40
614 676 7.895429 TGAAAAATGAAGGACCCTGATAAATCT 59.105 33.333 0.00 0.00 0.00 2.40
615 677 8.670521 AAAAATGAAGGACCCTGATAAATCTT 57.329 30.769 0.00 0.00 0.00 2.40
650 779 0.249120 AAGCATGTCATCCCGAACGA 59.751 50.000 0.00 0.00 0.00 3.85
655 784 3.788797 GCATGTCATCCCGAACGATTTTC 60.789 47.826 0.00 0.00 0.00 2.29
657 786 3.670625 TGTCATCCCGAACGATTTTCTT 58.329 40.909 0.00 0.00 0.00 2.52
661 790 4.272504 TCATCCCGAACGATTTTCTTATGC 59.727 41.667 0.00 0.00 0.00 3.14
686 815 0.687920 TTAGTTGACGTGGGATGGCA 59.312 50.000 0.00 0.00 0.00 4.92
689 818 0.889186 GTTGACGTGGGATGGCAACT 60.889 55.000 7.18 0.00 36.73 3.16
690 819 0.179004 TTGACGTGGGATGGCAACTT 60.179 50.000 0.00 0.00 37.61 2.66
691 820 0.179004 TGACGTGGGATGGCAACTTT 60.179 50.000 0.00 0.00 37.61 2.66
692 821 1.072489 TGACGTGGGATGGCAACTTTA 59.928 47.619 0.00 0.00 37.61 1.85
693 822 1.737793 GACGTGGGATGGCAACTTTAG 59.262 52.381 0.00 0.00 37.61 1.85
694 823 1.073284 ACGTGGGATGGCAACTTTAGT 59.927 47.619 0.00 0.00 37.61 2.24
695 824 2.159382 CGTGGGATGGCAACTTTAGTT 58.841 47.619 0.00 0.00 39.12 2.24
730 859 4.102649 CAACTTTGTCCCAGTTCGTTTTC 58.897 43.478 0.00 0.00 31.83 2.29
736 865 3.064931 GTCCCAGTTCGTTTTCTTCGAT 58.935 45.455 0.00 0.00 37.18 3.59
759 888 3.565063 AGAAAATTGCCATGTTTGCCAAC 59.435 39.130 0.00 0.00 0.00 3.77
775 904 2.727916 GCCAACCTCGCGTGAAATAAAG 60.728 50.000 10.21 0.00 0.00 1.85
780 909 2.095969 CCTCGCGTGAAATAAAGTTGCA 60.096 45.455 10.21 0.00 0.00 4.08
788 917 7.122550 GCGTGAAATAAAGTTGCAATGAAAAA 58.877 30.769 0.59 0.00 0.00 1.94
807 936 2.625823 CGTTCGGGTTGCCATGCTT 61.626 57.895 0.00 0.00 0.00 3.91
808 937 1.302383 CGTTCGGGTTGCCATGCTTA 61.302 55.000 0.00 0.00 0.00 3.09
809 938 0.885196 GTTCGGGTTGCCATGCTTAA 59.115 50.000 0.00 0.00 0.00 1.85
810 939 1.271102 GTTCGGGTTGCCATGCTTAAA 59.729 47.619 0.00 0.00 0.00 1.52
812 941 2.175202 TCGGGTTGCCATGCTTAAAAT 58.825 42.857 0.00 0.00 0.00 1.82
813 942 2.165437 TCGGGTTGCCATGCTTAAAATC 59.835 45.455 0.00 0.00 0.00 2.17
814 943 2.738321 CGGGTTGCCATGCTTAAAATCC 60.738 50.000 0.00 0.00 0.00 3.01
815 944 2.539476 GGTTGCCATGCTTAAAATCCG 58.461 47.619 0.00 0.00 0.00 4.18
816 945 2.165437 GGTTGCCATGCTTAAAATCCGA 59.835 45.455 0.00 0.00 0.00 4.55
817 946 3.367910 GGTTGCCATGCTTAAAATCCGAA 60.368 43.478 0.00 0.00 0.00 4.30
818 947 3.502191 TGCCATGCTTAAAATCCGAAC 57.498 42.857 0.00 0.00 0.00 3.95
819 948 2.159448 TGCCATGCTTAAAATCCGAACG 60.159 45.455 0.00 0.00 0.00 3.95
894 1038 2.165167 GGGTGTTGGGTTAAAGTAGCC 58.835 52.381 0.00 0.00 36.22 3.93
939 1085 4.451150 TGCTACCTTCCAGCGCCG 62.451 66.667 2.29 0.00 42.13 6.46
1119 1270 2.574399 GACACGCTCCACCTCCTC 59.426 66.667 0.00 0.00 0.00 3.71
1176 1327 1.381327 CCTCCTCCGCAACCTCCTA 60.381 63.158 0.00 0.00 0.00 2.94
1491 1642 3.016971 TGCCATGAGGACCTGGGG 61.017 66.667 0.00 0.00 36.89 4.96
1643 1804 6.767423 TCATAGCTGCATTTGCTTTACAGATA 59.233 34.615 4.08 0.00 41.46 1.98
1645 1806 8.724229 CATAGCTGCATTTGCTTTACAGATATA 58.276 33.333 4.08 0.00 37.74 0.86
1646 1807 6.963796 AGCTGCATTTGCTTTACAGATATAC 58.036 36.000 1.02 0.00 42.66 1.47
1647 1808 6.769822 AGCTGCATTTGCTTTACAGATATACT 59.230 34.615 1.02 0.00 42.66 2.12
1648 1809 7.284034 AGCTGCATTTGCTTTACAGATATACTT 59.716 33.333 1.02 0.00 42.66 2.24
1649 1810 7.589221 GCTGCATTTGCTTTACAGATATACTTC 59.411 37.037 3.94 0.00 42.66 3.01
1650 1811 8.504812 TGCATTTGCTTTACAGATATACTTCA 57.495 30.769 3.94 0.00 42.66 3.02
1651 1812 9.123902 TGCATTTGCTTTACAGATATACTTCAT 57.876 29.630 3.94 0.00 42.66 2.57
1652 1813 9.604626 GCATTTGCTTTACAGATATACTTCATC 57.395 33.333 0.00 0.00 38.21 2.92
1654 1815 7.946655 TTGCTTTACAGATATACTTCATCCG 57.053 36.000 0.00 0.00 0.00 4.18
1655 1816 7.050970 TGCTTTACAGATATACTTCATCCGT 57.949 36.000 0.00 0.00 0.00 4.69
1656 1817 7.497595 TGCTTTACAGATATACTTCATCCGTT 58.502 34.615 0.00 0.00 0.00 4.44
1657 1818 7.652105 TGCTTTACAGATATACTTCATCCGTTC 59.348 37.037 0.00 0.00 0.00 3.95
1658 1819 7.652105 GCTTTACAGATATACTTCATCCGTTCA 59.348 37.037 0.00 0.00 0.00 3.18
1659 1820 9.529325 CTTTACAGATATACTTCATCCGTTCAA 57.471 33.333 0.00 0.00 0.00 2.69
1660 1821 9.878667 TTTACAGATATACTTCATCCGTTCAAA 57.121 29.630 0.00 0.00 0.00 2.69
1661 1822 9.878667 TTACAGATATACTTCATCCGTTCAAAA 57.121 29.630 0.00 0.00 0.00 2.44
1662 1823 8.964476 ACAGATATACTTCATCCGTTCAAAAT 57.036 30.769 0.00 0.00 0.00 1.82
1671 1832 9.396022 ACTTCATCCGTTCAAAATATAAGATGT 57.604 29.630 0.00 0.00 33.33 3.06
1692 1853 9.410556 AGATGTTTTAATTGTTTTCTGAATCGG 57.589 29.630 0.00 0.00 0.00 4.18
1693 1854 7.938563 TGTTTTAATTGTTTTCTGAATCGGG 57.061 32.000 0.00 0.00 0.00 5.14
1694 1855 7.493367 TGTTTTAATTGTTTTCTGAATCGGGT 58.507 30.769 0.00 0.00 0.00 5.28
1695 1856 7.436673 TGTTTTAATTGTTTTCTGAATCGGGTG 59.563 33.333 0.00 0.00 0.00 4.61
1696 1857 6.642707 TTAATTGTTTTCTGAATCGGGTGT 57.357 33.333 0.00 0.00 0.00 4.16
1697 1858 7.747155 TTAATTGTTTTCTGAATCGGGTGTA 57.253 32.000 0.00 0.00 0.00 2.90
1698 1859 6.834168 AATTGTTTTCTGAATCGGGTGTAT 57.166 33.333 0.00 0.00 0.00 2.29
1699 1860 7.931578 AATTGTTTTCTGAATCGGGTGTATA 57.068 32.000 0.00 0.00 0.00 1.47
1700 1861 8.519799 AATTGTTTTCTGAATCGGGTGTATAT 57.480 30.769 0.00 0.00 0.00 0.86
1701 1862 9.621629 AATTGTTTTCTGAATCGGGTGTATATA 57.378 29.630 0.00 0.00 0.00 0.86
1702 1863 8.657074 TTGTTTTCTGAATCGGGTGTATATAG 57.343 34.615 0.00 0.00 0.00 1.31
1703 1864 8.014070 TGTTTTCTGAATCGGGTGTATATAGA 57.986 34.615 0.00 0.00 0.00 1.98
1704 1865 7.924412 TGTTTTCTGAATCGGGTGTATATAGAC 59.076 37.037 1.36 1.36 0.00 2.59
1705 1866 7.591421 TTTCTGAATCGGGTGTATATAGACA 57.409 36.000 11.75 0.00 0.00 3.41
1711 1872 5.069516 AATCGGGTGTATATAGACACGGTTT 59.930 40.000 28.20 20.47 45.70 3.27
1712 1873 6.265196 AATCGGGTGTATATAGACACGGTTTA 59.735 38.462 28.20 13.85 45.70 2.01
1713 1874 7.522725 AATCGGGTGTATATAGACACGGTTTAG 60.523 40.741 28.20 5.72 45.70 1.85
1725 1886 4.343811 CACGGTTTAGTGTGTTTGTTCA 57.656 40.909 0.00 0.00 37.35 3.18
1726 1887 4.092816 CACGGTTTAGTGTGTTTGTTCAC 58.907 43.478 0.00 0.00 37.35 3.18
1727 1888 4.004982 ACGGTTTAGTGTGTTTGTTCACT 58.995 39.130 0.00 0.00 45.21 3.41
1728 1889 4.093850 ACGGTTTAGTGTGTTTGTTCACTC 59.906 41.667 1.08 0.00 42.77 3.51
1729 1890 4.093703 CGGTTTAGTGTGTTTGTTCACTCA 59.906 41.667 1.08 0.00 42.77 3.41
1730 1891 5.220777 CGGTTTAGTGTGTTTGTTCACTCAT 60.221 40.000 1.08 0.00 42.77 2.90
1731 1892 6.560711 GGTTTAGTGTGTTTGTTCACTCATT 58.439 36.000 1.08 0.00 42.77 2.57
1732 1893 6.472163 GGTTTAGTGTGTTTGTTCACTCATTG 59.528 38.462 1.08 0.00 42.77 2.82
1733 1894 4.032703 AGTGTGTTTGTTCACTCATTGC 57.967 40.909 0.00 0.00 40.28 3.56
1734 1895 3.443329 AGTGTGTTTGTTCACTCATTGCA 59.557 39.130 0.00 0.00 40.28 4.08
1735 1896 3.792956 GTGTGTTTGTTCACTCATTGCAG 59.207 43.478 0.00 0.00 38.90 4.41
1736 1897 3.443329 TGTGTTTGTTCACTCATTGCAGT 59.557 39.130 0.00 0.00 38.90 4.40
1737 1898 4.037690 GTGTTTGTTCACTCATTGCAGTC 58.962 43.478 0.00 0.00 35.68 3.51
1738 1899 3.066621 TGTTTGTTCACTCATTGCAGTCC 59.933 43.478 0.00 0.00 0.00 3.85
1739 1900 1.511850 TGTTCACTCATTGCAGTCCG 58.488 50.000 0.00 0.00 0.00 4.79
1740 1901 1.202639 TGTTCACTCATTGCAGTCCGT 60.203 47.619 0.00 0.00 0.00 4.69
1741 1902 2.036604 TGTTCACTCATTGCAGTCCGTA 59.963 45.455 0.00 0.00 0.00 4.02
1742 1903 3.262420 GTTCACTCATTGCAGTCCGTAT 58.738 45.455 0.00 0.00 0.00 3.06
1743 1904 3.610040 TCACTCATTGCAGTCCGTATT 57.390 42.857 0.00 0.00 0.00 1.89
1744 1905 3.937814 TCACTCATTGCAGTCCGTATTT 58.062 40.909 0.00 0.00 0.00 1.40
1745 1906 5.079689 TCACTCATTGCAGTCCGTATTTA 57.920 39.130 0.00 0.00 0.00 1.40
1746 1907 5.109210 TCACTCATTGCAGTCCGTATTTAG 58.891 41.667 0.00 0.00 0.00 1.85
1747 1908 4.870426 CACTCATTGCAGTCCGTATTTAGT 59.130 41.667 0.00 0.00 0.00 2.24
1748 1909 5.005779 CACTCATTGCAGTCCGTATTTAGTC 59.994 44.000 0.00 0.00 0.00 2.59
1749 1910 4.439057 TCATTGCAGTCCGTATTTAGTCC 58.561 43.478 0.00 0.00 0.00 3.85
1750 1911 3.965379 TTGCAGTCCGTATTTAGTCCA 57.035 42.857 0.00 0.00 0.00 4.02
1751 1912 4.481368 TTGCAGTCCGTATTTAGTCCAT 57.519 40.909 0.00 0.00 0.00 3.41
1752 1913 5.601583 TTGCAGTCCGTATTTAGTCCATA 57.398 39.130 0.00 0.00 0.00 2.74
1753 1914 5.801531 TGCAGTCCGTATTTAGTCCATAT 57.198 39.130 0.00 0.00 0.00 1.78
1754 1915 6.169557 TGCAGTCCGTATTTAGTCCATATT 57.830 37.500 0.00 0.00 0.00 1.28
1755 1916 5.989168 TGCAGTCCGTATTTAGTCCATATTG 59.011 40.000 0.00 0.00 0.00 1.90
1756 1917 6.183360 TGCAGTCCGTATTTAGTCCATATTGA 60.183 38.462 0.00 0.00 0.00 2.57
1757 1918 6.704493 GCAGTCCGTATTTAGTCCATATTGAA 59.296 38.462 0.00 0.00 0.00 2.69
1758 1919 7.225931 GCAGTCCGTATTTAGTCCATATTGAAA 59.774 37.037 0.00 0.00 0.00 2.69
1759 1920 9.273016 CAGTCCGTATTTAGTCCATATTGAAAT 57.727 33.333 0.00 0.00 0.00 2.17
1786 1947 9.829507 ATCCAAAACATCTTTTATTTGTGAACA 57.170 25.926 0.00 0.00 32.29 3.18
1787 1948 9.311916 TCCAAAACATCTTTTATTTGTGAACAG 57.688 29.630 0.00 0.00 32.29 3.16
1788 1949 9.311916 CCAAAACATCTTTTATTTGTGAACAGA 57.688 29.630 0.00 0.00 32.29 3.41
1790 1951 9.533253 AAAACATCTTTTATTTGTGAACAGAGG 57.467 29.630 0.00 0.00 0.00 3.69
1791 1952 7.219484 ACATCTTTTATTTGTGAACAGAGGG 57.781 36.000 0.00 0.00 0.00 4.30
1834 1995 9.196552 GCTTAAGCTGTTTGTTTTTATGAATCT 57.803 29.630 20.38 0.00 38.21 2.40
1855 2016 9.702494 GAATCTGTGTTATGATGATCATACTGA 57.298 33.333 14.33 14.47 38.92 3.41
1877 2038 7.202016 TGAAAATTAGTTCAGCACAAGTAGG 57.798 36.000 0.00 0.00 32.56 3.18
1878 2039 6.995686 TGAAAATTAGTTCAGCACAAGTAGGA 59.004 34.615 0.00 0.00 32.56 2.94
1879 2040 7.665559 TGAAAATTAGTTCAGCACAAGTAGGAT 59.334 33.333 0.00 0.00 32.56 3.24
1880 2041 6.992063 AATTAGTTCAGCACAAGTAGGATG 57.008 37.500 0.00 0.00 0.00 3.51
1881 2042 5.483685 TTAGTTCAGCACAAGTAGGATGT 57.516 39.130 0.00 0.00 0.00 3.06
1888 2049 2.771089 CACAAGTAGGATGTGCACAGT 58.229 47.619 25.84 14.38 41.42 3.55
1889 2050 2.481568 CACAAGTAGGATGTGCACAGTG 59.518 50.000 25.84 19.43 41.42 3.66
1890 2051 2.104792 ACAAGTAGGATGTGCACAGTGT 59.895 45.455 25.84 15.46 0.00 3.55
1891 2052 3.323691 ACAAGTAGGATGTGCACAGTGTA 59.676 43.478 25.84 12.64 0.00 2.90
1892 2053 3.876274 AGTAGGATGTGCACAGTGTAG 57.124 47.619 25.84 0.00 0.00 2.74
1893 2054 3.431415 AGTAGGATGTGCACAGTGTAGA 58.569 45.455 25.84 5.30 0.00 2.59
2058 2227 3.814842 TGCTCAGTGGTTGTAATGAGTTG 59.185 43.478 0.00 0.00 42.87 3.16
2107 2276 7.754851 ATTTAGTGAAATACGGTTTTGGACT 57.245 32.000 0.00 0.00 33.33 3.85
2241 2410 8.397906 TGTTTGATATGTTGCTGAAGTATTAGC 58.602 33.333 0.00 0.00 40.29 3.09
2265 2434 3.503748 AGTTGCTTGATAGTTGGAACTGC 59.496 43.478 2.14 0.00 40.03 4.40
2275 2444 4.891992 AGTTGGAACTGCTACTATGTGT 57.108 40.909 0.00 0.00 37.98 3.72
2324 2494 7.101652 TGTGAGATACTATCAGAGAACCAAC 57.898 40.000 0.00 0.00 0.00 3.77
2383 2553 6.367695 TGACTTGTCGAATGTTATGGTTAGTG 59.632 38.462 0.00 0.00 0.00 2.74
2430 2605 5.641209 GCAGTCAGTCACATATTGTTCTCTT 59.359 40.000 0.00 0.00 0.00 2.85
2569 2744 4.855340 TCTGTGTTGAGGAGGAAAAGTTT 58.145 39.130 0.00 0.00 0.00 2.66
2628 2803 3.831911 GGTGAATCTGGAAATGGGTTCAA 59.168 43.478 0.00 0.00 38.06 2.69
2635 2810 4.462483 TCTGGAAATGGGTTCAATGCTAAC 59.538 41.667 0.00 0.00 38.06 2.34
2656 2831 3.882888 ACCATGCATTTCTTATGGGTACG 59.117 43.478 0.00 0.00 44.41 3.67
2696 2871 4.617959 TGAACGACCTGAAGAAGTTAGTG 58.382 43.478 0.00 0.00 0.00 2.74
2701 2876 4.477780 GACCTGAAGAAGTTAGTGTCTCG 58.522 47.826 0.00 0.00 0.00 4.04
2710 2885 5.978322 AGAAGTTAGTGTCTCGAACAGTTTC 59.022 40.000 11.54 9.93 41.81 2.78
2722 2897 4.474226 GAACAGTTTCGCTCTTCATGTT 57.526 40.909 0.00 0.00 32.46 2.71
2723 2898 4.458708 GAACAGTTTCGCTCTTCATGTTC 58.541 43.478 0.00 0.00 38.54 3.18
2733 2908 6.805713 TCGCTCTTCATGTTCTCAATATACA 58.194 36.000 0.00 0.00 0.00 2.29
2873 3048 1.087501 GGAACCCTCTTCATCGTTGC 58.912 55.000 0.00 0.00 0.00 4.17
2874 3049 1.610624 GGAACCCTCTTCATCGTTGCA 60.611 52.381 0.00 0.00 0.00 4.08
2875 3050 1.734465 GAACCCTCTTCATCGTTGCAG 59.266 52.381 0.00 0.00 0.00 4.41
2876 3051 0.036010 ACCCTCTTCATCGTTGCAGG 60.036 55.000 0.00 0.00 0.00 4.85
2877 3052 1.372087 CCCTCTTCATCGTTGCAGGC 61.372 60.000 0.00 0.00 0.00 4.85
2878 3053 0.392193 CCTCTTCATCGTTGCAGGCT 60.392 55.000 0.00 0.00 0.00 4.58
2879 3054 0.725686 CTCTTCATCGTTGCAGGCTG 59.274 55.000 10.94 10.94 0.00 4.85
2880 3055 0.321346 TCTTCATCGTTGCAGGCTGA 59.679 50.000 20.86 0.00 0.00 4.26
2881 3056 0.725686 CTTCATCGTTGCAGGCTGAG 59.274 55.000 20.86 6.03 0.00 3.35
2882 3057 1.300971 TTCATCGTTGCAGGCTGAGC 61.301 55.000 20.86 3.87 0.00 4.26
2892 3067 4.874528 GGCTGAGCCCTCTTCATC 57.125 61.111 13.77 0.00 44.06 2.92
2893 3068 1.227497 GGCTGAGCCCTCTTCATCG 60.227 63.158 13.77 0.00 44.06 3.84
2894 3069 1.227497 GCTGAGCCCTCTTCATCGG 60.227 63.158 0.00 0.00 0.00 4.18
2895 3070 1.445095 CTGAGCCCTCTTCATCGGG 59.555 63.158 0.00 0.00 43.60 5.14
2987 3162 0.764890 ACTGTTGCAGGCTGGTCTTA 59.235 50.000 17.64 0.00 35.51 2.10
3205 3380 4.141181 AGGCAGCTGAATGGGATTATGTTA 60.141 41.667 20.43 0.00 0.00 2.41
3235 3410 2.163010 GCAGTGTGTCATTGATGAAGGG 59.837 50.000 0.00 0.00 38.75 3.95
3406 3581 3.317993 ACAAGAAAACGGGTCATCCAAAG 59.682 43.478 0.00 0.00 34.36 2.77
3492 3667 2.416107 CTGTGCCCCACATCCTGTGT 62.416 60.000 6.53 0.00 46.45 3.72
3553 3728 3.287222 ACTGTTTCCAAAGTGCTTAGCA 58.713 40.909 1.39 1.39 35.60 3.49
3557 3732 6.209391 ACTGTTTCCAAAGTGCTTAGCATATT 59.791 34.615 11.03 5.98 41.91 1.28
3580 3755 8.897872 ATTGCATTTCTGACTCTTTTGAAATT 57.102 26.923 0.00 0.00 37.12 1.82
3665 3840 2.289565 GGCAATGCCTGGACTTACTAC 58.710 52.381 18.47 0.00 46.69 2.73
3754 3929 3.764885 GCAATCTTGAATGCTTACGGT 57.235 42.857 3.66 0.00 39.46 4.83
3755 3930 4.875544 GCAATCTTGAATGCTTACGGTA 57.124 40.909 3.66 0.00 39.46 4.02
3756 3931 4.588278 GCAATCTTGAATGCTTACGGTAC 58.412 43.478 3.66 0.00 39.46 3.34
3771 3946 2.629639 GGTACGCTTTGAAATGTGGG 57.370 50.000 0.00 0.00 0.00 4.61
3777 3952 1.606224 GCTTTGAAATGTGGGCTGGTG 60.606 52.381 0.00 0.00 0.00 4.17
3889 4064 2.432510 CTGGTCATGGTTCCTCTAGACC 59.567 54.545 0.00 0.00 44.37 3.85
3918 4151 9.251440 TCATTAAGTACTTCTAGTTCTGGCTAA 57.749 33.333 12.39 0.00 0.00 3.09
3973 4206 2.158827 TCTTGCGCTGGGCTATGATTAA 60.159 45.455 17.81 1.09 44.05 1.40
4045 4278 1.270274 ACCGTTATGTACTGTCGCACA 59.730 47.619 0.00 0.00 0.00 4.57
4121 4355 3.472652 TGAAGTCGGTGTGCAGTAAAAT 58.527 40.909 0.00 0.00 0.00 1.82
4243 4478 9.631452 AGATTTTAATTCTGCTCAGTAAAAAGC 57.369 29.630 7.51 7.71 39.02 3.51
4244 4479 9.631452 GATTTTAATTCTGCTCAGTAAAAAGCT 57.369 29.630 7.51 0.00 39.31 3.74
4245 4480 9.631452 ATTTTAATTCTGCTCAGTAAAAAGCTC 57.369 29.630 0.00 0.00 39.31 4.09
4246 4481 4.935885 ATTCTGCTCAGTAAAAAGCTCG 57.064 40.909 0.00 0.00 39.31 5.03
4247 4482 3.660501 TCTGCTCAGTAAAAAGCTCGA 57.339 42.857 0.00 0.00 39.31 4.04
4248 4483 3.318017 TCTGCTCAGTAAAAAGCTCGAC 58.682 45.455 0.00 0.00 39.31 4.20
4249 4484 2.413453 CTGCTCAGTAAAAAGCTCGACC 59.587 50.000 0.00 0.00 39.31 4.79
4250 4485 2.037251 TGCTCAGTAAAAAGCTCGACCT 59.963 45.455 0.00 0.00 39.31 3.85
4251 4486 2.413453 GCTCAGTAAAAAGCTCGACCTG 59.587 50.000 0.00 0.00 35.60 4.00
4252 4487 2.413453 CTCAGTAAAAAGCTCGACCTGC 59.587 50.000 0.00 0.00 0.00 4.85
4253 4488 2.037251 TCAGTAAAAAGCTCGACCTGCT 59.963 45.455 0.00 0.00 43.32 4.24
4383 4618 3.311322 TCAACTTTTGCAGGTTACAGTCG 59.689 43.478 0.00 0.00 0.00 4.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 4.382320 GTTACCGGAGTGGCGGCA 62.382 66.667 9.46 7.97 43.94 5.69
38 39 1.078708 ATTGGTTACCGGAGTGGCG 60.079 57.895 9.46 0.00 43.94 5.69
41 42 1.029947 GGCCATTGGTTACCGGAGTG 61.030 60.000 9.46 0.00 0.00 3.51
71 72 2.759641 CTTCAGGCTGAGCAAGGGCA 62.760 60.000 17.91 0.00 44.61 5.36
108 112 5.064071 GCCAGATAAATAATCTAAGAGCGCC 59.936 44.000 2.29 0.00 43.42 6.53
127 131 1.925455 CTTCCCCTTCCCTGCCAGA 60.925 63.158 0.00 0.00 0.00 3.86
139 143 2.204244 TCCACCCTTCCCTTCCCC 60.204 66.667 0.00 0.00 0.00 4.81
140 144 2.985116 GCTCCACCCTTCCCTTCCC 61.985 68.421 0.00 0.00 0.00 3.97
142 146 0.322906 CAAGCTCCACCCTTCCCTTC 60.323 60.000 0.00 0.00 0.00 3.46
158 162 5.033589 ACAGAGAGATTAATCTGGGCAAG 57.966 43.478 22.61 9.54 45.86 4.01
225 229 2.959516 TCTCACTGACAAGGCATTACG 58.040 47.619 0.00 0.00 0.00 3.18
226 230 5.645497 AGAATTCTCACTGACAAGGCATTAC 59.355 40.000 0.88 0.00 0.00 1.89
227 231 5.809001 AGAATTCTCACTGACAAGGCATTA 58.191 37.500 0.88 0.00 0.00 1.90
229 233 4.298103 AGAATTCTCACTGACAAGGCAT 57.702 40.909 0.88 0.00 0.00 4.40
230 234 3.777106 AGAATTCTCACTGACAAGGCA 57.223 42.857 0.88 0.00 0.00 4.75
231 235 3.190118 CCAAGAATTCTCACTGACAAGGC 59.810 47.826 8.78 0.00 0.00 4.35
233 237 4.070716 AGCCAAGAATTCTCACTGACAAG 58.929 43.478 8.78 0.00 0.00 3.16
239 243 4.530161 ACTACAGAGCCAAGAATTCTCACT 59.470 41.667 8.78 6.49 0.00 3.41
267 271 1.853319 CAGAGCACGAACGTTCCAC 59.147 57.895 22.07 11.65 0.00 4.02
268 272 1.954146 GCAGAGCACGAACGTTCCA 60.954 57.895 22.07 0.00 0.00 3.53
269 273 1.664965 AGCAGAGCACGAACGTTCC 60.665 57.895 22.07 8.72 0.00 3.62
270 274 1.488957 CAGCAGAGCACGAACGTTC 59.511 57.895 18.47 18.47 0.00 3.95
271 275 1.956170 CCAGCAGAGCACGAACGTT 60.956 57.895 0.00 0.00 0.00 3.99
272 276 2.356313 CCAGCAGAGCACGAACGT 60.356 61.111 0.00 0.00 0.00 3.99
273 277 3.114616 CCCAGCAGAGCACGAACG 61.115 66.667 0.00 0.00 0.00 3.95
274 278 1.598130 AACCCAGCAGAGCACGAAC 60.598 57.895 0.00 0.00 0.00 3.95
303 307 5.174037 TCGGTGGATTATTCAGAAACCTT 57.826 39.130 0.00 0.00 0.00 3.50
304 308 4.837093 TCGGTGGATTATTCAGAAACCT 57.163 40.909 0.00 0.00 0.00 3.50
305 309 6.451064 AATTCGGTGGATTATTCAGAAACC 57.549 37.500 0.00 0.00 0.00 3.27
306 310 7.415229 GGTAATTCGGTGGATTATTCAGAAAC 58.585 38.462 0.00 0.00 0.00 2.78
307 311 6.259167 CGGTAATTCGGTGGATTATTCAGAAA 59.741 38.462 0.00 0.00 0.00 2.52
338 342 5.617528 TGTCACAACTCAGGTACCTTAAA 57.382 39.130 13.15 0.00 0.00 1.52
346 350 1.202698 GCCTCTTGTCACAACTCAGGT 60.203 52.381 7.11 0.00 0.00 4.00
348 352 2.245159 TGCCTCTTGTCACAACTCAG 57.755 50.000 0.00 0.00 0.00 3.35
416 424 5.011329 TGCCTGCATTTTCATCTCTCTTTTT 59.989 36.000 0.00 0.00 0.00 1.94
421 435 3.630769 TGATGCCTGCATTTTCATCTCTC 59.369 43.478 6.02 0.00 36.70 3.20
422 436 3.628008 TGATGCCTGCATTTTCATCTCT 58.372 40.909 6.02 0.00 36.70 3.10
435 449 4.685169 ACATTACGAAAACTGATGCCTG 57.315 40.909 0.00 0.00 0.00 4.85
442 456 5.912396 TGCAGCTAAAACATTACGAAAACTG 59.088 36.000 0.00 0.00 0.00 3.16
503 520 4.023963 GGACAGAGCAGAAACTAACCAAAC 60.024 45.833 0.00 0.00 0.00 2.93
537 555 5.323581 TGACCACTGAAATTGAATCCATCA 58.676 37.500 0.00 0.00 35.85 3.07
558 576 6.266131 AGGGGTTAAAGAATCTGCATATGA 57.734 37.500 6.97 0.00 0.00 2.15
561 579 9.959721 GATAATAGGGGTTAAAGAATCTGCATA 57.040 33.333 0.00 0.00 0.00 3.14
587 649 7.466746 TTTATCAGGGTCCTTCATTTTTCAG 57.533 36.000 0.00 0.00 0.00 3.02
596 658 5.294552 CGTTCAAGATTTATCAGGGTCCTTC 59.705 44.000 0.00 0.00 0.00 3.46
605 667 6.757897 AATCCAAGCGTTCAAGATTTATCA 57.242 33.333 0.00 0.00 0.00 2.15
612 674 4.794169 GCTTAAAATCCAAGCGTTCAAGA 58.206 39.130 0.00 0.00 39.08 3.02
686 815 8.905103 GTTGTCATGTGTTAACAACTAAAGTT 57.095 30.769 10.51 0.00 45.79 2.66
730 859 6.237648 GCAAACATGGCAATTTTCTATCGAAG 60.238 38.462 0.00 0.00 0.00 3.79
736 865 4.613925 TGGCAAACATGGCAATTTTCTA 57.386 36.364 2.31 0.00 41.49 2.10
754 883 0.800012 TTATTTCACGCGAGGTTGGC 59.200 50.000 15.93 0.00 0.00 4.52
759 888 2.095969 TGCAACTTTATTTCACGCGAGG 60.096 45.455 15.93 4.29 0.00 4.63
775 904 2.217620 CCCGAACGTTTTTCATTGCAAC 59.782 45.455 0.00 0.00 0.00 4.17
780 909 2.465855 GCAACCCGAACGTTTTTCATT 58.534 42.857 0.46 0.00 0.00 2.57
788 917 3.361977 GCATGGCAACCCGAACGT 61.362 61.111 0.00 0.00 0.00 3.99
815 944 5.507974 GGAAATGATAAATCCCGAACGTTC 58.492 41.667 18.47 18.47 0.00 3.95
816 945 4.034742 CGGAAATGATAAATCCCGAACGTT 59.965 41.667 0.00 0.00 39.31 3.99
817 946 3.558418 CGGAAATGATAAATCCCGAACGT 59.442 43.478 0.00 0.00 39.31 3.99
818 947 3.805422 TCGGAAATGATAAATCCCGAACG 59.195 43.478 0.00 0.00 42.31 3.95
819 948 5.744666 TTCGGAAATGATAAATCCCGAAC 57.255 39.130 13.40 0.00 46.86 3.95
865 997 2.120274 CCAACACCCCAGGGCAAT 59.880 61.111 0.00 0.00 39.32 3.56
874 1006 2.165167 GGCTACTTTAACCCAACACCC 58.835 52.381 0.00 0.00 0.00 4.61
876 1008 3.483421 ACAGGCTACTTTAACCCAACAC 58.517 45.455 0.00 0.00 0.00 3.32
877 1009 3.868619 ACAGGCTACTTTAACCCAACA 57.131 42.857 0.00 0.00 0.00 3.33
878 1010 3.688185 GCTACAGGCTACTTTAACCCAAC 59.312 47.826 0.00 0.00 38.06 3.77
894 1038 1.429463 GTCAAGTCGGTTGGCTACAG 58.571 55.000 0.80 0.00 37.81 2.74
939 1085 3.160748 GCTGGAGAGGGAGGAGGC 61.161 72.222 0.00 0.00 0.00 4.70
1551 1706 5.060816 CACGCAAAAGCATAAACCAATACTG 59.939 40.000 0.00 0.00 0.00 2.74
1552 1707 5.160641 CACGCAAAAGCATAAACCAATACT 58.839 37.500 0.00 0.00 0.00 2.12
1577 1738 0.463295 CTAGCAGCAGACATGGGTGG 60.463 60.000 0.00 0.00 34.47 4.61
1645 1806 9.396022 ACATCTTATATTTTGAACGGATGAAGT 57.604 29.630 0.00 0.00 35.01 3.01
1666 1827 9.410556 CCGATTCAGAAAACAATTAAAACATCT 57.589 29.630 0.00 0.00 0.00 2.90
1667 1828 8.647226 CCCGATTCAGAAAACAATTAAAACATC 58.353 33.333 0.00 0.00 0.00 3.06
1668 1829 8.147704 ACCCGATTCAGAAAACAATTAAAACAT 58.852 29.630 0.00 0.00 0.00 2.71
1669 1830 7.436673 CACCCGATTCAGAAAACAATTAAAACA 59.563 33.333 0.00 0.00 0.00 2.83
1670 1831 7.436970 ACACCCGATTCAGAAAACAATTAAAAC 59.563 33.333 0.00 0.00 0.00 2.43
1671 1832 7.493367 ACACCCGATTCAGAAAACAATTAAAA 58.507 30.769 0.00 0.00 0.00 1.52
1672 1833 7.045126 ACACCCGATTCAGAAAACAATTAAA 57.955 32.000 0.00 0.00 0.00 1.52
1673 1834 6.642707 ACACCCGATTCAGAAAACAATTAA 57.357 33.333 0.00 0.00 0.00 1.40
1674 1835 7.931578 ATACACCCGATTCAGAAAACAATTA 57.068 32.000 0.00 0.00 0.00 1.40
1675 1836 6.834168 ATACACCCGATTCAGAAAACAATT 57.166 33.333 0.00 0.00 0.00 2.32
1676 1837 9.273016 CTATATACACCCGATTCAGAAAACAAT 57.727 33.333 0.00 0.00 0.00 2.71
1677 1838 8.479689 TCTATATACACCCGATTCAGAAAACAA 58.520 33.333 0.00 0.00 0.00 2.83
1678 1839 7.924412 GTCTATATACACCCGATTCAGAAAACA 59.076 37.037 0.00 0.00 0.00 2.83
1679 1840 7.924412 TGTCTATATACACCCGATTCAGAAAAC 59.076 37.037 0.00 0.00 0.00 2.43
1680 1841 7.924412 GTGTCTATATACACCCGATTCAGAAAA 59.076 37.037 9.65 0.00 43.23 2.29
1681 1842 7.431249 GTGTCTATATACACCCGATTCAGAAA 58.569 38.462 9.65 0.00 43.23 2.52
1682 1843 6.293790 CGTGTCTATATACACCCGATTCAGAA 60.294 42.308 13.93 0.00 45.66 3.02
1683 1844 5.180680 CGTGTCTATATACACCCGATTCAGA 59.819 44.000 13.93 0.00 45.66 3.27
1684 1845 5.391449 CGTGTCTATATACACCCGATTCAG 58.609 45.833 13.93 0.00 45.66 3.02
1685 1846 4.216902 CCGTGTCTATATACACCCGATTCA 59.783 45.833 13.93 0.00 45.66 2.57
1686 1847 4.217118 ACCGTGTCTATATACACCCGATTC 59.783 45.833 13.93 0.00 45.66 2.52
1687 1848 4.147321 ACCGTGTCTATATACACCCGATT 58.853 43.478 13.93 0.00 45.66 3.34
1688 1849 3.759581 ACCGTGTCTATATACACCCGAT 58.240 45.455 13.93 0.00 45.66 4.18
1689 1850 3.213206 ACCGTGTCTATATACACCCGA 57.787 47.619 13.93 0.00 45.66 5.14
1690 1851 3.996150 AACCGTGTCTATATACACCCG 57.004 47.619 13.93 8.16 45.66 5.28
1691 1852 6.183360 ACACTAAACCGTGTCTATATACACCC 60.183 42.308 13.93 0.00 44.32 4.61
1692 1853 6.694411 CACACTAAACCGTGTCTATATACACC 59.306 42.308 13.93 0.11 45.74 4.16
1693 1854 7.253422 ACACACTAAACCGTGTCTATATACAC 58.747 38.462 10.55 10.55 45.74 2.90
1694 1855 7.395190 ACACACTAAACCGTGTCTATATACA 57.605 36.000 0.00 0.00 45.74 2.29
1695 1856 8.589629 CAAACACACTAAACCGTGTCTATATAC 58.410 37.037 0.00 0.00 45.74 1.47
1696 1857 8.306038 ACAAACACACTAAACCGTGTCTATATA 58.694 33.333 0.00 0.00 45.74 0.86
1697 1858 7.156673 ACAAACACACTAAACCGTGTCTATAT 58.843 34.615 0.00 0.00 45.74 0.86
1698 1859 6.514947 ACAAACACACTAAACCGTGTCTATA 58.485 36.000 0.00 0.00 45.74 1.31
1699 1860 5.362263 ACAAACACACTAAACCGTGTCTAT 58.638 37.500 0.00 0.00 45.74 1.98
1700 1861 4.757594 ACAAACACACTAAACCGTGTCTA 58.242 39.130 0.00 0.00 45.74 2.59
1701 1862 3.602483 ACAAACACACTAAACCGTGTCT 58.398 40.909 0.00 0.00 45.74 3.41
1702 1863 4.142859 TGAACAAACACACTAAACCGTGTC 60.143 41.667 0.00 0.00 45.74 3.67
1704 1865 4.092816 GTGAACAAACACACTAAACCGTG 58.907 43.478 0.00 0.00 40.11 4.94
1705 1866 4.004982 AGTGAACAAACACACTAAACCGT 58.995 39.130 0.00 0.00 44.06 4.83
1706 1867 4.093703 TGAGTGAACAAACACACTAAACCG 59.906 41.667 0.00 0.00 45.54 4.44
1707 1868 5.554822 TGAGTGAACAAACACACTAAACC 57.445 39.130 0.00 0.00 45.54 3.27
1708 1869 6.020678 GCAATGAGTGAACAAACACACTAAAC 60.021 38.462 0.00 0.00 45.54 2.01
1709 1870 6.033341 GCAATGAGTGAACAAACACACTAAA 58.967 36.000 0.00 0.00 45.54 1.85
1710 1871 5.124617 TGCAATGAGTGAACAAACACACTAA 59.875 36.000 0.00 0.00 45.54 2.24
1711 1872 4.637977 TGCAATGAGTGAACAAACACACTA 59.362 37.500 0.00 0.00 45.54 2.74
1713 1874 3.768406 TGCAATGAGTGAACAAACACAC 58.232 40.909 0.00 0.00 42.45 3.82
1714 1875 3.443329 ACTGCAATGAGTGAACAAACACA 59.557 39.130 0.00 0.00 42.45 3.72
1715 1876 4.032703 ACTGCAATGAGTGAACAAACAC 57.967 40.909 0.00 0.00 40.60 3.32
1716 1877 3.066621 GGACTGCAATGAGTGAACAAACA 59.933 43.478 0.00 0.00 0.00 2.83
1717 1878 3.632189 GGACTGCAATGAGTGAACAAAC 58.368 45.455 0.00 0.00 0.00 2.93
1718 1879 2.290367 CGGACTGCAATGAGTGAACAAA 59.710 45.455 0.00 0.00 0.00 2.83
1719 1880 1.872952 CGGACTGCAATGAGTGAACAA 59.127 47.619 0.00 0.00 0.00 2.83
1720 1881 1.202639 ACGGACTGCAATGAGTGAACA 60.203 47.619 0.00 0.00 0.00 3.18
1721 1882 1.512926 ACGGACTGCAATGAGTGAAC 58.487 50.000 0.00 0.00 0.00 3.18
1722 1883 3.610040 ATACGGACTGCAATGAGTGAA 57.390 42.857 0.00 0.00 0.00 3.18
1723 1884 3.610040 AATACGGACTGCAATGAGTGA 57.390 42.857 0.00 0.00 0.00 3.41
1724 1885 4.870426 ACTAAATACGGACTGCAATGAGTG 59.130 41.667 0.00 0.00 0.00 3.51
1725 1886 5.086104 ACTAAATACGGACTGCAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
1726 1887 4.508124 GGACTAAATACGGACTGCAATGAG 59.492 45.833 0.00 0.00 0.00 2.90
1727 1888 4.081365 TGGACTAAATACGGACTGCAATGA 60.081 41.667 0.00 0.00 0.00 2.57
1728 1889 4.188462 TGGACTAAATACGGACTGCAATG 58.812 43.478 0.00 0.00 0.00 2.82
1729 1890 4.481368 TGGACTAAATACGGACTGCAAT 57.519 40.909 0.00 0.00 0.00 3.56
1730 1891 3.965379 TGGACTAAATACGGACTGCAA 57.035 42.857 0.00 0.00 0.00 4.08
1731 1892 5.801531 ATATGGACTAAATACGGACTGCA 57.198 39.130 0.00 0.00 0.00 4.41
1732 1893 6.220930 TCAATATGGACTAAATACGGACTGC 58.779 40.000 0.00 0.00 0.00 4.40
1733 1894 8.657074 TTTCAATATGGACTAAATACGGACTG 57.343 34.615 0.00 0.00 0.00 3.51
1760 1921 9.829507 TGTTCACAAATAAAAGATGTTTTGGAT 57.170 25.926 10.65 0.00 36.51 3.41
1761 1922 9.311916 CTGTTCACAAATAAAAGATGTTTTGGA 57.688 29.630 10.65 0.00 36.51 3.53
1762 1923 9.311916 TCTGTTCACAAATAAAAGATGTTTTGG 57.688 29.630 10.65 1.17 36.51 3.28
1764 1925 9.533253 CCTCTGTTCACAAATAAAAGATGTTTT 57.467 29.630 5.82 5.82 39.31 2.43
1765 1926 8.143835 CCCTCTGTTCACAAATAAAAGATGTTT 58.856 33.333 0.00 0.00 0.00 2.83
1766 1927 7.505585 TCCCTCTGTTCACAAATAAAAGATGTT 59.494 33.333 0.00 0.00 0.00 2.71
1767 1928 7.004086 TCCCTCTGTTCACAAATAAAAGATGT 58.996 34.615 0.00 0.00 0.00 3.06
1768 1929 7.175641 ACTCCCTCTGTTCACAAATAAAAGATG 59.824 37.037 0.00 0.00 0.00 2.90
1769 1930 7.234355 ACTCCCTCTGTTCACAAATAAAAGAT 58.766 34.615 0.00 0.00 0.00 2.40
1770 1931 6.601332 ACTCCCTCTGTTCACAAATAAAAGA 58.399 36.000 0.00 0.00 0.00 2.52
1771 1932 6.884280 ACTCCCTCTGTTCACAAATAAAAG 57.116 37.500 0.00 0.00 0.00 2.27
1772 1933 7.741785 TCTACTCCCTCTGTTCACAAATAAAA 58.258 34.615 0.00 0.00 0.00 1.52
1773 1934 7.311092 TCTACTCCCTCTGTTCACAAATAAA 57.689 36.000 0.00 0.00 0.00 1.40
1774 1935 6.928348 TCTACTCCCTCTGTTCACAAATAA 57.072 37.500 0.00 0.00 0.00 1.40
1775 1936 6.497259 ACTTCTACTCCCTCTGTTCACAAATA 59.503 38.462 0.00 0.00 0.00 1.40
1776 1937 5.308237 ACTTCTACTCCCTCTGTTCACAAAT 59.692 40.000 0.00 0.00 0.00 2.32
1777 1938 4.654262 ACTTCTACTCCCTCTGTTCACAAA 59.346 41.667 0.00 0.00 0.00 2.83
1778 1939 4.039245 CACTTCTACTCCCTCTGTTCACAA 59.961 45.833 0.00 0.00 0.00 3.33
1779 1940 3.574396 CACTTCTACTCCCTCTGTTCACA 59.426 47.826 0.00 0.00 0.00 3.58
1780 1941 3.574826 ACACTTCTACTCCCTCTGTTCAC 59.425 47.826 0.00 0.00 0.00 3.18
1781 1942 3.574396 CACACTTCTACTCCCTCTGTTCA 59.426 47.826 0.00 0.00 0.00 3.18
1782 1943 3.056465 CCACACTTCTACTCCCTCTGTTC 60.056 52.174 0.00 0.00 0.00 3.18
1783 1944 2.900546 CCACACTTCTACTCCCTCTGTT 59.099 50.000 0.00 0.00 0.00 3.16
1784 1945 2.530701 CCACACTTCTACTCCCTCTGT 58.469 52.381 0.00 0.00 0.00 3.41
1785 1946 1.827969 CCCACACTTCTACTCCCTCTG 59.172 57.143 0.00 0.00 0.00 3.35
1786 1947 1.433592 ACCCACACTTCTACTCCCTCT 59.566 52.381 0.00 0.00 0.00 3.69
1787 1948 1.939980 ACCCACACTTCTACTCCCTC 58.060 55.000 0.00 0.00 0.00 4.30
1788 1949 1.978580 CAACCCACACTTCTACTCCCT 59.021 52.381 0.00 0.00 0.00 4.20
1789 1950 1.610886 GCAACCCACACTTCTACTCCC 60.611 57.143 0.00 0.00 0.00 4.30
1790 1951 1.348036 AGCAACCCACACTTCTACTCC 59.652 52.381 0.00 0.00 0.00 3.85
1791 1952 2.841442 AGCAACCCACACTTCTACTC 57.159 50.000 0.00 0.00 0.00 2.59
1855 2016 7.448469 ACATCCTACTTGTGCTGAACTAATTTT 59.552 33.333 0.00 0.00 0.00 1.82
1856 2017 6.942576 ACATCCTACTTGTGCTGAACTAATTT 59.057 34.615 0.00 0.00 0.00 1.82
1857 2018 6.372659 CACATCCTACTTGTGCTGAACTAATT 59.627 38.462 0.00 0.00 38.18 1.40
1859 2020 5.237815 CACATCCTACTTGTGCTGAACTAA 58.762 41.667 0.00 0.00 38.18 2.24
1860 2021 4.820897 CACATCCTACTTGTGCTGAACTA 58.179 43.478 0.00 0.00 38.18 2.24
1861 2022 3.668447 CACATCCTACTTGTGCTGAACT 58.332 45.455 0.00 0.00 38.18 3.01
1868 2029 2.481568 CACTGTGCACATCCTACTTGTG 59.518 50.000 22.00 17.55 45.74 3.33
1869 2030 2.104792 ACACTGTGCACATCCTACTTGT 59.895 45.455 22.00 9.22 0.00 3.16
1870 2031 2.771089 ACACTGTGCACATCCTACTTG 58.229 47.619 22.00 8.51 0.00 3.16
1871 2032 3.832490 TCTACACTGTGCACATCCTACTT 59.168 43.478 22.00 3.39 0.00 2.24
1872 2033 3.431415 TCTACACTGTGCACATCCTACT 58.569 45.455 22.00 2.57 0.00 2.57
1873 2034 3.868757 TCTACACTGTGCACATCCTAC 57.131 47.619 22.00 0.00 0.00 3.18
1874 2035 6.731292 ATAATCTACACTGTGCACATCCTA 57.269 37.500 22.00 8.50 0.00 2.94
1875 2036 3.988976 AATCTACACTGTGCACATCCT 57.011 42.857 22.00 7.74 0.00 3.24
1876 2037 7.969536 ATAATAATCTACACTGTGCACATCC 57.030 36.000 22.00 0.00 0.00 3.51
1877 2038 9.869844 GAAATAATAATCTACACTGTGCACATC 57.130 33.333 22.00 4.65 0.00 3.06
1878 2039 9.394767 TGAAATAATAATCTACACTGTGCACAT 57.605 29.630 22.00 8.49 0.00 3.21
1879 2040 8.785329 TGAAATAATAATCTACACTGTGCACA 57.215 30.769 20.37 20.37 0.00 4.57
1880 2041 7.852945 GCTGAAATAATAATCTACACTGTGCAC 59.147 37.037 10.75 10.75 0.00 4.57
1881 2042 7.552330 TGCTGAAATAATAATCTACACTGTGCA 59.448 33.333 7.90 0.00 0.00 4.57
1882 2043 7.919690 TGCTGAAATAATAATCTACACTGTGC 58.080 34.615 7.90 0.00 0.00 4.57
2058 2227 7.559590 AGCAAATGACCATAATCTAACTGTC 57.440 36.000 0.00 0.00 0.00 3.51
2107 2276 7.388437 ACGAACAGGTGATATAAACCAAAGTA 58.612 34.615 9.22 0.00 40.40 2.24
2203 2372 7.628153 GCAACATATCAAACATATGACACCACA 60.628 37.037 10.38 0.00 36.23 4.17
2241 2410 4.074970 AGTTCCAACTATCAAGCAACTGG 58.925 43.478 0.00 0.00 37.52 4.00
2265 2434 7.909121 CGGACTCTACACTTAAACACATAGTAG 59.091 40.741 0.00 0.00 0.00 2.57
2275 2444 5.474532 TGTAAGCTCGGACTCTACACTTAAA 59.525 40.000 0.00 0.00 0.00 1.52
2324 2494 8.236084 CAAAAATTGCCTTCAATAAGTCAGAG 57.764 34.615 0.00 0.00 41.77 3.35
2407 2582 6.648310 ACAAGAGAACAATATGTGACTGACTG 59.352 38.462 0.00 0.00 0.00 3.51
2569 2744 1.741525 GGCTGCAAACAAGGCTTCA 59.258 52.632 0.00 0.00 0.00 3.02
2635 2810 3.882888 ACGTACCCATAAGAAATGCATGG 59.117 43.478 0.00 0.00 39.19 3.66
2701 2876 4.212214 AGAACATGAAGAGCGAAACTGTTC 59.788 41.667 0.00 10.90 46.39 3.18
2710 2885 6.920210 TCTGTATATTGAGAACATGAAGAGCG 59.080 38.462 0.00 0.00 0.00 5.03
2753 2928 2.433436 ACCTCGGCAAGTAAAATCCAC 58.567 47.619 0.00 0.00 0.00 4.02
2876 3051 1.227497 CCGATGAAGAGGGCTCAGC 60.227 63.158 0.00 0.00 0.00 4.26
2877 3052 1.445095 CCCGATGAAGAGGGCTCAG 59.555 63.158 0.00 0.00 41.34 3.35
2878 3053 2.066393 CCCCGATGAAGAGGGCTCA 61.066 63.158 0.00 0.00 46.24 4.26
2879 3054 1.762460 TCCCCGATGAAGAGGGCTC 60.762 63.158 0.00 0.00 46.24 4.70
2880 3055 2.066999 GTCCCCGATGAAGAGGGCT 61.067 63.158 0.00 0.00 46.24 5.19
2881 3056 2.066999 AGTCCCCGATGAAGAGGGC 61.067 63.158 0.00 0.00 46.24 5.19
2883 3058 1.195115 TTCAGTCCCCGATGAAGAGG 58.805 55.000 0.00 0.00 31.93 3.69
2887 3062 0.036388 GTGCTTCAGTCCCCGATGAA 60.036 55.000 0.00 0.00 34.41 2.57
2888 3063 1.596934 GTGCTTCAGTCCCCGATGA 59.403 57.895 0.00 0.00 0.00 2.92
2889 3064 1.450312 GGTGCTTCAGTCCCCGATG 60.450 63.158 0.00 0.00 0.00 3.84
2890 3065 1.613630 AGGTGCTTCAGTCCCCGAT 60.614 57.895 0.00 0.00 0.00 4.18
2891 3066 2.203788 AGGTGCTTCAGTCCCCGA 60.204 61.111 0.00 0.00 0.00 5.14
2892 3067 2.046892 CAGGTGCTTCAGTCCCCG 60.047 66.667 0.00 0.00 0.00 5.73
2893 3068 0.890996 CAACAGGTGCTTCAGTCCCC 60.891 60.000 0.00 0.00 0.00 4.81
2894 3069 0.108585 TCAACAGGTGCTTCAGTCCC 59.891 55.000 0.00 0.00 0.00 4.46
2895 3070 1.202698 AGTCAACAGGTGCTTCAGTCC 60.203 52.381 0.00 0.00 0.00 3.85
2987 3162 8.270030 ACCTAGGTATTTTAAGAGGCGTTTTAT 58.730 33.333 14.41 0.00 0.00 1.40
3235 3410 3.209410 CCACTCCCTCAAGTATGCATTC 58.791 50.000 3.54 0.00 0.00 2.67
3406 3581 2.295885 CATCAGGAGGAATTGACCAGC 58.704 52.381 0.00 0.00 0.00 4.85
3534 3709 6.389091 CAATATGCTAAGCACTTTGGAAACA 58.611 36.000 0.00 0.00 43.04 2.83
3557 3732 8.721019 AAAATTTCAAAAGAGTCAGAAATGCA 57.279 26.923 11.22 0.00 39.75 3.96
3595 3770 5.376625 AGGACAAGCACAAATTTAGACAGA 58.623 37.500 0.00 0.00 0.00 3.41
3665 3840 4.676196 GCTGAAGTTAAACATGCATCCAGG 60.676 45.833 0.00 0.00 0.00 4.45
3702 3877 7.868415 AGATTTATAGCGTTACTAAAGAGCAGG 59.132 37.037 0.00 0.00 33.57 4.85
3751 3926 1.135803 CCCACATTTCAAAGCGTACCG 60.136 52.381 0.00 0.00 0.00 4.02
3752 3927 1.402325 GCCCACATTTCAAAGCGTACC 60.402 52.381 0.00 0.00 0.00 3.34
3753 3928 1.539827 AGCCCACATTTCAAAGCGTAC 59.460 47.619 0.00 0.00 0.00 3.67
3754 3929 1.539388 CAGCCCACATTTCAAAGCGTA 59.461 47.619 0.00 0.00 0.00 4.42
3755 3930 0.314935 CAGCCCACATTTCAAAGCGT 59.685 50.000 0.00 0.00 0.00 5.07
3756 3931 0.388907 CCAGCCCACATTTCAAAGCG 60.389 55.000 0.00 0.00 0.00 4.68
3770 3945 0.878416 TAACGCAAATGTCACCAGCC 59.122 50.000 0.00 0.00 0.00 4.85
3771 3946 2.420022 AGATAACGCAAATGTCACCAGC 59.580 45.455 0.00 0.00 0.00 4.85
3777 3952 5.005203 CAGTCTCTCAGATAACGCAAATGTC 59.995 44.000 0.00 0.00 0.00 3.06
3889 4064 7.918562 GCCAGAACTAGAAGTACTTAATGAGAG 59.081 40.741 8.42 2.71 0.00 3.20
3918 4151 4.080695 ACAGACATTGCATCTGGTAGTCAT 60.081 41.667 17.75 0.00 46.60 3.06
4045 4278 3.245229 TGCCTATTCCCACATCACTGTTT 60.245 43.478 0.00 0.00 31.62 2.83
4217 4452 9.631452 GCTTTTTACTGAGCAGAATTAAAATCT 57.369 29.630 4.21 0.00 38.73 2.40
4218 4453 9.631452 AGCTTTTTACTGAGCAGAATTAAAATC 57.369 29.630 4.21 2.17 41.31 2.17
4219 4454 9.631452 GAGCTTTTTACTGAGCAGAATTAAAAT 57.369 29.630 4.21 0.00 41.31 1.82
4220 4455 7.803189 CGAGCTTTTTACTGAGCAGAATTAAAA 59.197 33.333 4.21 3.04 41.31 1.52
4221 4456 7.172532 TCGAGCTTTTTACTGAGCAGAATTAAA 59.827 33.333 4.21 0.00 41.31 1.52
4222 4457 6.649141 TCGAGCTTTTTACTGAGCAGAATTAA 59.351 34.615 4.21 0.00 41.31 1.40
4223 4458 6.090898 GTCGAGCTTTTTACTGAGCAGAATTA 59.909 38.462 4.21 0.00 41.31 1.40
4224 4459 4.997395 TCGAGCTTTTTACTGAGCAGAATT 59.003 37.500 4.21 0.00 41.31 2.17
4225 4460 4.390297 GTCGAGCTTTTTACTGAGCAGAAT 59.610 41.667 4.21 0.00 41.31 2.40
4226 4461 3.741344 GTCGAGCTTTTTACTGAGCAGAA 59.259 43.478 4.21 0.00 41.31 3.02
4227 4462 3.318017 GTCGAGCTTTTTACTGAGCAGA 58.682 45.455 4.21 0.00 41.31 4.26
4228 4463 2.413453 GGTCGAGCTTTTTACTGAGCAG 59.587 50.000 7.51 0.00 41.31 4.24
4229 4464 2.037251 AGGTCGAGCTTTTTACTGAGCA 59.963 45.455 12.24 0.00 41.31 4.26
4230 4465 2.413453 CAGGTCGAGCTTTTTACTGAGC 59.587 50.000 15.83 0.00 39.17 4.26
4231 4466 2.413453 GCAGGTCGAGCTTTTTACTGAG 59.587 50.000 15.83 1.19 0.00 3.35
4232 4467 2.037251 AGCAGGTCGAGCTTTTTACTGA 59.963 45.455 15.83 0.00 39.87 3.41
4233 4468 2.417719 AGCAGGTCGAGCTTTTTACTG 58.582 47.619 15.83 3.78 39.87 2.74
4234 4469 2.841442 AGCAGGTCGAGCTTTTTACT 57.159 45.000 15.83 4.81 39.87 2.24
4241 4476 2.421751 TCTAGTAAGCAGGTCGAGCT 57.578 50.000 12.24 12.24 45.97 4.09
4242 4477 3.719173 AATCTAGTAAGCAGGTCGAGC 57.281 47.619 6.48 6.48 0.00 5.03
4243 4478 8.649973 AATTAAAATCTAGTAAGCAGGTCGAG 57.350 34.615 0.00 0.00 0.00 4.04
4244 4479 9.444600 AAAATTAAAATCTAGTAAGCAGGTCGA 57.555 29.630 0.00 0.00 0.00 4.20
4245 4480 9.490663 CAAAATTAAAATCTAGTAAGCAGGTCG 57.509 33.333 0.00 0.00 0.00 4.79
4246 4481 9.290483 GCAAAATTAAAATCTAGTAAGCAGGTC 57.710 33.333 0.00 0.00 0.00 3.85
4247 4482 9.025041 AGCAAAATTAAAATCTAGTAAGCAGGT 57.975 29.630 0.00 0.00 0.00 4.00
4248 4483 9.508567 GAGCAAAATTAAAATCTAGTAAGCAGG 57.491 33.333 0.00 0.00 0.00 4.85
4321 4556 0.676736 CTTCTACCGCCTCCATCCTC 59.323 60.000 0.00 0.00 0.00 3.71
4383 4618 6.127310 ACTCTACTTTGTCCTCCACATCATAC 60.127 42.308 0.00 0.00 33.90 2.39


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.