Multiple sequence alignment - TraesCS4D01G346800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G346800 chr4D 100.000 4531 0 0 1 4531 500525956 500530486 0.000000e+00 8368.0
1 TraesCS4D01G346800 chrUn 98.144 1239 13 5 1579 2813 10147369 10148601 0.000000e+00 2152.0
2 TraesCS4D01G346800 chrUn 98.703 925 11 1 2811 3735 10148630 10149553 0.000000e+00 1640.0
3 TraesCS4D01G346800 chrUn 98.218 449 7 1 3731 4179 10149518 10149965 0.000000e+00 784.0
4 TraesCS4D01G346800 chrUn 96.953 361 9 2 4172 4531 10159550 10159909 5.010000e-169 604.0
5 TraesCS4D01G346800 chrUn 78.663 778 166 0 1012 1789 37705220 37704443 6.720000e-143 518.0
6 TraesCS4D01G346800 chrUn 80.402 398 70 7 3152 3545 37704327 37703934 3.430000e-76 296.0
7 TraesCS4D01G346800 chr4B 93.402 1364 57 10 558 1895 644475820 644477176 0.000000e+00 1989.0
8 TraesCS4D01G346800 chr4B 91.154 1334 63 19 584 1895 644369259 644367959 0.000000e+00 1759.0
9 TraesCS4D01G346800 chr4B 91.765 850 58 3 2891 3739 644477442 644478280 0.000000e+00 1171.0
10 TraesCS4D01G346800 chr4B 91.923 780 51 4 2891 3669 644367004 644366236 0.000000e+00 1081.0
11 TraesCS4D01G346800 chr4B 90.036 562 48 5 3718 4276 644366236 644365680 0.000000e+00 721.0
12 TraesCS4D01G346800 chr4B 83.387 626 63 18 3914 4531 644481601 644482193 3.990000e-150 542.0
13 TraesCS4D01G346800 chr4B 78.590 780 164 1 1013 1792 577016181 577015405 3.130000e-141 512.0
14 TraesCS4D01G346800 chr4B 96.124 258 7 3 1 257 644370099 644369844 7.010000e-113 418.0
15 TraesCS4D01G346800 chr4B 95.385 260 7 3 1 257 644475526 644475783 4.220000e-110 409.0
16 TraesCS4D01G346800 chr4B 93.609 266 16 1 261 526 557852637 557852901 3.280000e-106 396.0
17 TraesCS4D01G346800 chr4B 87.879 330 23 12 1932 2255 644367513 644367195 5.540000e-99 372.0
18 TraesCS4D01G346800 chr4B 83.180 327 51 4 3216 3540 577015227 577014903 3.430000e-76 296.0
19 TraesCS4D01G346800 chr4B 90.541 74 6 1 2696 2769 644477372 644477444 3.730000e-16 97.1
20 TraesCS4D01G346800 chr4B 91.304 69 5 1 2701 2769 644367069 644367002 4.830000e-15 93.5
21 TraesCS4D01G346800 chr7B 86.856 1651 140 22 2891 4531 477975604 477977187 0.000000e+00 1775.0
22 TraesCS4D01G346800 chr7B 86.345 747 68 17 804 1546 477971804 477972520 0.000000e+00 784.0
23 TraesCS4D01G346800 chr7B 89.835 364 30 6 1532 1894 477974311 477974668 1.150000e-125 460.0
24 TraesCS4D01G346800 chr7B 85.862 290 20 9 1932 2215 477975122 477975396 5.740000e-74 289.0
25 TraesCS4D01G346800 chr7B 84.293 191 18 6 619 809 477965276 477965454 4.660000e-40 176.0
26 TraesCS4D01G346800 chr5A 91.674 1069 61 13 896 1944 681486531 681487591 0.000000e+00 1456.0
27 TraesCS4D01G346800 chr5A 89.955 896 54 10 3062 3947 681487588 681488457 0.000000e+00 1123.0
28 TraesCS4D01G346800 chr5A 86.094 489 48 12 3947 4433 681490676 681491146 4.040000e-140 508.0
29 TraesCS4D01G346800 chr5A 91.815 281 20 3 262 541 614360151 614360429 5.500000e-104 388.0
30 TraesCS4D01G346800 chr5A 87.943 282 22 4 1 274 681485867 681486144 5.650000e-84 322.0
31 TraesCS4D01G346800 chr5A 85.648 216 12 10 558 771 681486271 681486469 4.590000e-50 209.0
32 TraesCS4D01G346800 chr5A 93.506 77 4 1 4435 4510 681496259 681496335 3.700000e-21 113.0
33 TraesCS4D01G346800 chr5A 89.011 91 7 3 2811 2900 414775740 414775828 4.790000e-20 110.0
34 TraesCS4D01G346800 chr5A 93.443 61 4 0 818 878 681486474 681486534 1.740000e-14 91.6
35 TraesCS4D01G346800 chr5A 100.000 29 0 0 1971 1999 595396634 595396606 2.000000e-03 54.7
36 TraesCS4D01G346800 chr2D 80.639 1033 140 28 783 1789 639460011 639461009 0.000000e+00 745.0
37 TraesCS4D01G346800 chr2D 92.937 269 17 2 262 529 6206072 6206339 1.530000e-104 390.0
38 TraesCS4D01G346800 chr3D 78.947 779 162 2 1013 1790 17747902 17747125 3.100000e-146 529.0
39 TraesCS4D01G346800 chr3D 76.650 788 146 20 1021 1789 507535380 507534612 7.060000e-108 401.0
40 TraesCS4D01G346800 chr3D 84.146 328 48 4 3221 3545 17746920 17746594 9.460000e-82 315.0
41 TraesCS4D01G346800 chr3D 81.026 390 68 5 3151 3539 17777587 17777203 5.690000e-79 305.0
42 TraesCS4D01G346800 chr3D 90.000 90 6 3 2811 2898 545176633 545176721 3.700000e-21 113.0
43 TraesCS4D01G346800 chr4A 95.057 263 12 1 264 526 723602270 723602531 3.260000e-111 412.0
44 TraesCS4D01G346800 chr4A 83.537 164 27 0 1028 1191 661050647 661050484 2.180000e-33 154.0
45 TraesCS4D01G346800 chr7D 94.403 268 13 2 261 527 610813705 610813439 1.170000e-110 411.0
46 TraesCS4D01G346800 chr7D 92.857 280 18 2 262 541 148155422 148155699 5.460000e-109 405.0
47 TraesCS4D01G346800 chr7D 87.234 94 10 1 2811 2904 111478801 111478710 6.200000e-19 106.0
48 TraesCS4D01G346800 chr7D 84.946 93 9 5 1969 2058 406323367 406323457 6.240000e-14 89.8
49 TraesCS4D01G346800 chr5D 93.962 265 15 1 262 526 35992300 35992563 2.540000e-107 399.0
50 TraesCS4D01G346800 chr6D 93.585 265 16 1 262 526 151317476 151317213 1.180000e-105 394.0
51 TraesCS4D01G346800 chr6D 91.566 83 7 0 2811 2893 431160746 431160828 1.030000e-21 115.0
52 TraesCS4D01G346800 chr6D 87.912 91 7 2 2811 2898 374102536 374102625 2.230000e-18 104.0
53 TraesCS4D01G346800 chr6D 92.500 40 2 1 1970 2008 5905605 5905644 6.330000e-04 56.5
54 TraesCS4D01G346800 chr5B 92.308 273 20 1 262 534 538272877 538273148 1.980000e-103 387.0
55 TraesCS4D01G346800 chr3A 83.439 314 49 3 3227 3539 18836295 18835984 5.740000e-74 289.0
56 TraesCS4D01G346800 chr3A 86.869 99 12 1 2811 2908 28338121 28338219 4.790000e-20 110.0
57 TraesCS4D01G346800 chr1A 88.636 88 9 1 2811 2897 487486383 487486296 6.200000e-19 106.0
58 TraesCS4D01G346800 chr1B 88.506 87 9 1 2811 2896 160321100 160321014 2.230000e-18 104.0
59 TraesCS4D01G346800 chr7A 84.946 93 9 5 1969 2058 463647980 463648070 6.240000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G346800 chr4D 500525956 500530486 4530 False 8368.000000 8368 100.000000 1 4531 1 chr4D.!!$F1 4530
1 TraesCS4D01G346800 chrUn 10147369 10149965 2596 False 1525.333333 2152 98.355000 1579 4179 3 chrUn.!!$F2 2600
2 TraesCS4D01G346800 chrUn 37703934 37705220 1286 True 407.000000 518 79.532500 1012 3545 2 chrUn.!!$R1 2533
3 TraesCS4D01G346800 chr4B 644475526 644482193 6667 False 841.620000 1989 90.896000 1 4531 5 chr4B.!!$F2 4530
4 TraesCS4D01G346800 chr4B 644365680 644370099 4419 True 740.750000 1759 91.403333 1 4276 6 chr4B.!!$R2 4275
5 TraesCS4D01G346800 chr4B 577014903 577016181 1278 True 404.000000 512 80.885000 1013 3540 2 chr4B.!!$R1 2527
6 TraesCS4D01G346800 chr7B 477971804 477977187 5383 False 827.000000 1775 87.224500 804 4531 4 chr7B.!!$F2 3727
7 TraesCS4D01G346800 chr5A 681485867 681491146 5279 False 618.266667 1456 89.126167 1 4433 6 chr5A.!!$F4 4432
8 TraesCS4D01G346800 chr2D 639460011 639461009 998 False 745.000000 745 80.639000 783 1789 1 chr2D.!!$F2 1006
9 TraesCS4D01G346800 chr3D 17746594 17747902 1308 True 422.000000 529 81.546500 1013 3545 2 chr3D.!!$R3 2532
10 TraesCS4D01G346800 chr3D 507534612 507535380 768 True 401.000000 401 76.650000 1021 1789 1 chr3D.!!$R2 768

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
781 1427 3.130160 GCAAGAAGCAGCTCCCGG 61.130 66.667 0.0 0.0 44.79 5.73 F
1252 1929 2.325082 GCCAAATCCGACGCACTGT 61.325 57.895 0.0 0.0 0.00 3.55 F
2950 5992 4.457603 ACAACGAACAGCTTGCCATAATTA 59.542 37.500 0.0 0.0 0.00 1.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2653 5644 6.823689 AGCACAAGGATACCACTACTATTTTG 59.176 38.462 0.0 0.0 37.17 2.44 R
3099 6142 9.364989 CAATACCGAAACATGAAATAATTGGTT 57.635 29.630 0.0 0.0 0.00 3.67 R
4321 12752 0.394899 GCAAAGGTAGATGCCCTGCT 60.395 55.000 4.9 0.0 35.90 4.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
84 85 7.615582 CAGATTTTTCTGTGAGGCATAGTTA 57.384 36.000 0.00 0.00 33.32 2.24
168 173 4.562789 TGATGAATTCGTTTGAGCTACTCG 59.437 41.667 0.77 0.00 32.35 4.18
200 205 9.025041 TCCATACATCTAGATACATTCGATTGT 57.975 33.333 16.40 16.40 0.00 2.71
216 221 5.344884 TCGATTGTGCGACAAGTAATATGA 58.655 37.500 7.58 0.00 41.94 2.15
230 235 8.938883 ACAAGTAATATGAGTTGGATGGAGTAT 58.061 33.333 11.66 0.00 34.58 2.12
257 262 6.594744 AGTAATGAATCCACATATGTGCTGA 58.405 36.000 27.27 20.51 44.34 4.26
258 263 7.056006 AGTAATGAATCCACATATGTGCTGAA 58.944 34.615 27.27 13.87 44.34 3.02
259 264 6.387041 AATGAATCCACATATGTGCTGAAG 57.613 37.500 27.27 14.95 44.34 3.02
260 265 3.628942 TGAATCCACATATGTGCTGAAGC 59.371 43.478 27.27 16.35 44.34 3.86
261 266 3.572632 ATCCACATATGTGCTGAAGCT 57.427 42.857 27.27 5.13 44.34 3.74
264 269 5.039920 TCCACATATGTGCTGAAGCTAAT 57.960 39.130 27.27 0.26 44.34 1.73
265 270 6.173427 TCCACATATGTGCTGAAGCTAATA 57.827 37.500 27.27 2.45 44.34 0.98
266 271 5.991606 TCCACATATGTGCTGAAGCTAATAC 59.008 40.000 27.27 0.00 44.34 1.89
267 272 5.994054 CCACATATGTGCTGAAGCTAATACT 59.006 40.000 27.27 0.00 44.34 2.12
268 273 6.146837 CCACATATGTGCTGAAGCTAATACTC 59.853 42.308 27.27 0.00 44.34 2.59
269 274 6.146837 CACATATGTGCTGAAGCTAATACTCC 59.853 42.308 22.27 0.00 42.66 3.85
270 275 6.042552 ACATATGTGCTGAAGCTAATACTCCT 59.957 38.462 7.78 0.00 42.66 3.69
271 276 4.826274 TGTGCTGAAGCTAATACTCCTT 57.174 40.909 3.61 0.00 42.66 3.36
272 277 4.759782 TGTGCTGAAGCTAATACTCCTTC 58.240 43.478 3.61 0.00 42.66 3.46
273 278 4.123506 GTGCTGAAGCTAATACTCCTTCC 58.876 47.826 3.61 0.00 42.66 3.46
274 279 3.774766 TGCTGAAGCTAATACTCCTTCCA 59.225 43.478 3.61 0.00 42.66 3.53
275 280 4.410228 TGCTGAAGCTAATACTCCTTCCAT 59.590 41.667 3.61 0.00 42.66 3.41
276 281 5.104360 TGCTGAAGCTAATACTCCTTCCATT 60.104 40.000 3.61 0.00 42.66 3.16
277 282 5.468409 GCTGAAGCTAATACTCCTTCCATTC 59.532 44.000 0.00 0.00 35.32 2.67
278 283 5.930135 TGAAGCTAATACTCCTTCCATTCC 58.070 41.667 0.00 0.00 35.32 3.01
279 284 5.428457 TGAAGCTAATACTCCTTCCATTCCA 59.572 40.000 0.00 0.00 35.32 3.53
280 285 5.297569 AGCTAATACTCCTTCCATTCCAC 57.702 43.478 0.00 0.00 0.00 4.02
281 286 4.721776 AGCTAATACTCCTTCCATTCCACA 59.278 41.667 0.00 0.00 0.00 4.17
282 287 5.191722 AGCTAATACTCCTTCCATTCCACAA 59.808 40.000 0.00 0.00 0.00 3.33
283 288 6.064717 GCTAATACTCCTTCCATTCCACAAT 58.935 40.000 0.00 0.00 0.00 2.71
284 289 6.016777 GCTAATACTCCTTCCATTCCACAATG 60.017 42.308 0.00 0.00 39.45 2.82
285 290 3.814504 ACTCCTTCCATTCCACAATGT 57.185 42.857 0.00 0.00 38.22 2.71
286 291 4.927267 ACTCCTTCCATTCCACAATGTA 57.073 40.909 0.00 0.00 38.22 2.29
287 292 5.255397 ACTCCTTCCATTCCACAATGTAA 57.745 39.130 0.00 0.00 38.22 2.41
288 293 5.831103 ACTCCTTCCATTCCACAATGTAAT 58.169 37.500 0.00 0.00 38.22 1.89
289 294 5.653769 ACTCCTTCCATTCCACAATGTAATG 59.346 40.000 2.70 2.70 38.22 1.90
290 295 4.402155 TCCTTCCATTCCACAATGTAATGC 59.598 41.667 3.91 0.00 38.22 3.56
291 296 4.441913 CCTTCCATTCCACAATGTAATGCC 60.442 45.833 3.91 0.00 38.22 4.40
292 297 3.979911 TCCATTCCACAATGTAATGCCT 58.020 40.909 3.91 0.00 38.22 4.75
293 298 5.122707 TCCATTCCACAATGTAATGCCTA 57.877 39.130 3.91 0.00 38.22 3.93
294 299 5.704354 TCCATTCCACAATGTAATGCCTAT 58.296 37.500 3.91 0.00 38.22 2.57
295 300 6.846988 TCCATTCCACAATGTAATGCCTATA 58.153 36.000 3.91 0.00 38.22 1.31
296 301 7.293828 TCCATTCCACAATGTAATGCCTATAA 58.706 34.615 3.91 0.00 38.22 0.98
297 302 7.782168 TCCATTCCACAATGTAATGCCTATAAA 59.218 33.333 3.91 0.00 38.22 1.40
298 303 8.587608 CCATTCCACAATGTAATGCCTATAAAT 58.412 33.333 3.91 0.00 38.22 1.40
299 304 9.985730 CATTCCACAATGTAATGCCTATAAATT 57.014 29.630 0.00 0.00 35.53 1.82
321 326 9.911138 AAATTTTTGTGAAAATCAAACTTTGCT 57.089 22.222 0.00 0.00 42.97 3.91
324 329 9.818796 TTTTTGTGAAAATCAAACTTTGCTAAC 57.181 25.926 0.00 0.00 35.05 2.34
325 330 8.770438 TTTGTGAAAATCAAACTTTGCTAACT 57.230 26.923 0.00 0.00 31.17 2.24
326 331 8.770438 TTGTGAAAATCAAACTTTGCTAACTT 57.230 26.923 0.00 0.00 0.00 2.66
327 332 8.770438 TGTGAAAATCAAACTTTGCTAACTTT 57.230 26.923 0.00 0.00 0.00 2.66
328 333 8.655092 TGTGAAAATCAAACTTTGCTAACTTTG 58.345 29.630 6.65 6.65 0.00 2.77
329 334 8.868916 GTGAAAATCAAACTTTGCTAACTTTGA 58.131 29.630 14.34 14.34 37.12 2.69
330 335 8.868916 TGAAAATCAAACTTTGCTAACTTTGAC 58.131 29.630 14.30 6.30 35.89 3.18
331 336 7.770801 AAATCAAACTTTGCTAACTTTGACC 57.229 32.000 14.30 0.00 35.89 4.02
332 337 5.906113 TCAAACTTTGCTAACTTTGACCA 57.094 34.783 10.10 0.00 29.66 4.02
333 338 6.274157 TCAAACTTTGCTAACTTTGACCAA 57.726 33.333 10.10 0.00 29.66 3.67
334 339 6.329496 TCAAACTTTGCTAACTTTGACCAAG 58.671 36.000 10.10 0.00 38.64 3.61
336 341 5.248870 ACTTTGCTAACTTTGACCAAGTG 57.751 39.130 0.00 0.00 45.77 3.16
337 342 4.705023 ACTTTGCTAACTTTGACCAAGTGT 59.295 37.500 0.00 0.00 45.77 3.55
338 343 5.883673 ACTTTGCTAACTTTGACCAAGTGTA 59.116 36.000 0.00 0.00 45.77 2.90
339 344 6.546034 ACTTTGCTAACTTTGACCAAGTGTAT 59.454 34.615 0.00 0.00 45.77 2.29
340 345 7.717875 ACTTTGCTAACTTTGACCAAGTGTATA 59.282 33.333 0.00 0.00 45.77 1.47
341 346 7.667043 TTGCTAACTTTGACCAAGTGTATAG 57.333 36.000 0.00 0.00 45.77 1.31
342 347 6.999950 TGCTAACTTTGACCAAGTGTATAGA 58.000 36.000 0.00 0.00 45.77 1.98
343 348 7.097192 TGCTAACTTTGACCAAGTGTATAGAG 58.903 38.462 0.00 0.00 45.77 2.43
344 349 7.039293 TGCTAACTTTGACCAAGTGTATAGAGA 60.039 37.037 0.00 0.00 45.77 3.10
345 350 7.817962 GCTAACTTTGACCAAGTGTATAGAGAA 59.182 37.037 0.00 0.00 45.77 2.87
346 351 9.706691 CTAACTTTGACCAAGTGTATAGAGAAA 57.293 33.333 0.00 0.00 45.77 2.52
347 352 8.974060 AACTTTGACCAAGTGTATAGAGAAAA 57.026 30.769 0.00 0.00 45.77 2.29
348 353 8.379457 ACTTTGACCAAGTGTATAGAGAAAAC 57.621 34.615 0.00 0.00 44.70 2.43
349 354 7.444487 ACTTTGACCAAGTGTATAGAGAAAACC 59.556 37.037 0.00 0.00 44.70 3.27
350 355 5.475719 TGACCAAGTGTATAGAGAAAACCG 58.524 41.667 0.00 0.00 0.00 4.44
351 356 5.011329 TGACCAAGTGTATAGAGAAAACCGT 59.989 40.000 0.00 0.00 0.00 4.83
352 357 5.476614 ACCAAGTGTATAGAGAAAACCGTC 58.523 41.667 0.00 0.00 0.00 4.79
353 358 5.245526 ACCAAGTGTATAGAGAAAACCGTCT 59.754 40.000 0.00 0.00 0.00 4.18
354 359 6.435277 ACCAAGTGTATAGAGAAAACCGTCTA 59.565 38.462 0.00 0.00 0.00 2.59
355 360 6.750963 CCAAGTGTATAGAGAAAACCGTCTAC 59.249 42.308 0.00 0.00 0.00 2.59
356 361 7.310664 CAAGTGTATAGAGAAAACCGTCTACA 58.689 38.462 0.00 0.00 0.00 2.74
357 362 7.642082 AGTGTATAGAGAAAACCGTCTACAT 57.358 36.000 0.00 0.00 0.00 2.29
358 363 7.705214 AGTGTATAGAGAAAACCGTCTACATC 58.295 38.462 0.00 0.00 0.00 3.06
359 364 7.556996 AGTGTATAGAGAAAACCGTCTACATCT 59.443 37.037 0.00 0.00 0.00 2.90
360 365 8.834465 GTGTATAGAGAAAACCGTCTACATCTA 58.166 37.037 0.00 0.00 0.00 1.98
361 366 8.834465 TGTATAGAGAAAACCGTCTACATCTAC 58.166 37.037 0.00 0.00 0.00 2.59
362 367 7.876936 ATAGAGAAAACCGTCTACATCTACA 57.123 36.000 0.00 0.00 0.00 2.74
363 368 6.585695 AGAGAAAACCGTCTACATCTACAA 57.414 37.500 0.00 0.00 0.00 2.41
364 369 7.171630 AGAGAAAACCGTCTACATCTACAAT 57.828 36.000 0.00 0.00 0.00 2.71
365 370 8.289939 AGAGAAAACCGTCTACATCTACAATA 57.710 34.615 0.00 0.00 0.00 1.90
366 371 8.189460 AGAGAAAACCGTCTACATCTACAATAC 58.811 37.037 0.00 0.00 0.00 1.89
367 372 7.263496 AGAAAACCGTCTACATCTACAATACC 58.737 38.462 0.00 0.00 0.00 2.73
368 373 6.534475 AAACCGTCTACATCTACAATACCA 57.466 37.500 0.00 0.00 0.00 3.25
369 374 6.534475 AACCGTCTACATCTACAATACCAA 57.466 37.500 0.00 0.00 0.00 3.67
370 375 6.534475 ACCGTCTACATCTACAATACCAAA 57.466 37.500 0.00 0.00 0.00 3.28
371 376 6.335777 ACCGTCTACATCTACAATACCAAAC 58.664 40.000 0.00 0.00 0.00 2.93
372 377 6.071221 ACCGTCTACATCTACAATACCAAACA 60.071 38.462 0.00 0.00 0.00 2.83
373 378 6.984474 CCGTCTACATCTACAATACCAAACAT 59.016 38.462 0.00 0.00 0.00 2.71
374 379 7.042725 CCGTCTACATCTACAATACCAAACATG 60.043 40.741 0.00 0.00 0.00 3.21
375 380 7.491372 CGTCTACATCTACAATACCAAACATGT 59.509 37.037 0.00 0.00 0.00 3.21
376 381 9.811995 GTCTACATCTACAATACCAAACATGTA 57.188 33.333 0.00 0.00 0.00 2.29
377 382 9.811995 TCTACATCTACAATACCAAACATGTAC 57.188 33.333 0.00 0.00 0.00 2.90
378 383 9.594478 CTACATCTACAATACCAAACATGTACA 57.406 33.333 0.00 0.00 0.00 2.90
380 385 9.461312 ACATCTACAATACCAAACATGTACATT 57.539 29.630 5.37 0.00 0.00 2.71
381 386 9.935682 CATCTACAATACCAAACATGTACATTC 57.064 33.333 5.37 0.00 0.00 2.67
382 387 9.905713 ATCTACAATACCAAACATGTACATTCT 57.094 29.630 5.37 0.00 0.00 2.40
383 388 9.161629 TCTACAATACCAAACATGTACATTCTG 57.838 33.333 5.37 0.00 0.00 3.02
384 389 7.994425 ACAATACCAAACATGTACATTCTGA 57.006 32.000 5.37 0.00 0.00 3.27
385 390 8.402798 ACAATACCAAACATGTACATTCTGAA 57.597 30.769 5.37 0.00 0.00 3.02
386 391 8.855110 ACAATACCAAACATGTACATTCTGAAA 58.145 29.630 5.37 0.00 0.00 2.69
387 392 9.689976 CAATACCAAACATGTACATTCTGAAAA 57.310 29.630 5.37 0.00 0.00 2.29
415 420 7.741027 AACTCATGATGTATCCAATGATGTC 57.259 36.000 0.00 0.00 32.18 3.06
416 421 7.075851 ACTCATGATGTATCCAATGATGTCT 57.924 36.000 0.00 0.00 32.18 3.41
417 422 8.198807 ACTCATGATGTATCCAATGATGTCTA 57.801 34.615 0.00 0.00 32.18 2.59
418 423 8.823794 ACTCATGATGTATCCAATGATGTCTAT 58.176 33.333 0.00 0.00 32.18 1.98
419 424 9.668497 CTCATGATGTATCCAATGATGTCTATT 57.332 33.333 0.00 0.00 32.18 1.73
422 427 8.625786 TGATGTATCCAATGATGTCTATTTGG 57.374 34.615 0.00 0.00 32.18 3.28
423 428 8.219868 TGATGTATCCAATGATGTCTATTTGGT 58.780 33.333 0.00 0.00 32.18 3.67
424 429 9.725019 GATGTATCCAATGATGTCTATTTGGTA 57.275 33.333 0.00 0.00 32.18 3.25
485 490 8.439286 TCAAAGTTTGTAATGTTTGACTTTTGC 58.561 29.630 15.08 0.00 35.75 3.68
486 491 7.897575 AAGTTTGTAATGTTTGACTTTTGCA 57.102 28.000 0.00 0.00 0.00 4.08
487 492 7.897575 AGTTTGTAATGTTTGACTTTTGCAA 57.102 28.000 0.00 0.00 0.00 4.08
488 493 8.316640 AGTTTGTAATGTTTGACTTTTGCAAA 57.683 26.923 8.05 8.05 33.22 3.68
489 494 8.778358 AGTTTGTAATGTTTGACTTTTGCAAAA 58.222 25.926 22.61 22.61 37.03 2.44
490 495 9.387123 GTTTGTAATGTTTGACTTTTGCAAAAA 57.613 25.926 23.92 8.29 37.03 1.94
517 522 3.906720 AGGCACTACATTATGGAACGT 57.093 42.857 0.00 0.00 36.02 3.99
519 524 4.945246 AGGCACTACATTATGGAACGTAG 58.055 43.478 0.00 0.00 36.02 3.51
520 525 4.056050 GGCACTACATTATGGAACGTAGG 58.944 47.826 0.00 0.00 36.48 3.18
521 526 4.056050 GCACTACATTATGGAACGTAGGG 58.944 47.826 0.00 0.00 38.21 3.53
540 658 4.642429 AGGGAGTACTAGTTTGTTTGCAG 58.358 43.478 0.00 0.00 0.00 4.41
668 1314 9.687210 GTTCCACGAGTAAAAATTTTAAATCCT 57.313 29.630 3.34 0.00 0.00 3.24
771 1417 3.806521 CGTATCATCTTCCCTGCAAGAAG 59.193 47.826 16.53 16.53 41.76 2.85
781 1427 3.130160 GCAAGAAGCAGCTCCCGG 61.130 66.667 0.00 0.00 44.79 5.73
946 1606 6.052360 GCTATATAAATCCTCTTAGCCAGCC 58.948 44.000 0.00 0.00 0.00 4.85
1248 1925 2.745884 CTGGCCAAATCCGACGCA 60.746 61.111 7.01 0.00 0.00 5.24
1252 1929 2.325082 GCCAAATCCGACGCACTGT 61.325 57.895 0.00 0.00 0.00 3.55
2167 5157 9.660180 AAACTAGGTCAAAATTTGCAAAGTTTA 57.340 25.926 30.34 17.43 34.47 2.01
2653 5644 6.451064 AGCCTAACATTTTAAGGTGCATAC 57.549 37.500 0.00 0.00 0.00 2.39
2950 5992 4.457603 ACAACGAACAGCTTGCCATAATTA 59.542 37.500 0.00 0.00 0.00 1.40
3099 6142 3.652869 AGGGAACTGAGAGTTTGGATTGA 59.347 43.478 0.00 0.00 38.80 2.57
3842 6948 6.969993 TTTTGAATAGTTTAGTGGGCAAGT 57.030 33.333 0.00 0.00 0.00 3.16
3928 10128 4.081586 GTCTTGGGAAAGGAGATAAGTCGT 60.082 45.833 0.00 0.00 0.00 4.34
4017 12444 2.135139 CGCTTGTAGTTGCACTCTTCA 58.865 47.619 0.00 0.00 0.00 3.02
4205 12633 3.764237 TTCCGACAAGGCTAGAGTTTT 57.236 42.857 0.00 0.00 40.77 2.43
4227 12655 2.216046 CGTAGCATGCAGATGGTTCAT 58.784 47.619 21.98 0.00 40.77 2.57
4260 12688 2.936032 GGAGTGCCAACCCTCCCT 60.936 66.667 0.00 0.00 41.22 4.20
4280 12708 2.358737 CGGCACTCCTCAACACCC 60.359 66.667 0.00 0.00 0.00 4.61
4283 12711 2.529744 GCACTCCTCAACACCCCCT 61.530 63.158 0.00 0.00 0.00 4.79
4288 12716 2.660064 CCTCAACACCCCCTCCTCG 61.660 68.421 0.00 0.00 0.00 4.63
4289 12717 3.316573 CTCAACACCCCCTCCTCGC 62.317 68.421 0.00 0.00 0.00 5.03
4297 12728 1.760086 CCCCTCCTCGCAGTCATCT 60.760 63.158 0.00 0.00 0.00 2.90
4298 12729 0.468214 CCCCTCCTCGCAGTCATCTA 60.468 60.000 0.00 0.00 0.00 1.98
4300 12731 1.477740 CCCTCCTCGCAGTCATCTAGA 60.478 57.143 0.00 0.00 0.00 2.43
4303 12734 3.490078 CCTCCTCGCAGTCATCTAGAAAC 60.490 52.174 0.00 0.00 0.00 2.78
4368 12807 0.814457 GGTGGTATTTGCGCATGGAA 59.186 50.000 12.75 2.29 0.00 3.53
4369 12808 1.202290 GGTGGTATTTGCGCATGGAAG 60.202 52.381 12.75 0.00 0.00 3.46
4386 12825 0.613777 AAGAGGTTGATCGGGTGTCC 59.386 55.000 0.00 0.00 0.00 4.02
4421 12860 1.153289 GCATGACGTGGATCTGGCT 60.153 57.895 0.00 0.00 0.00 4.75
4488 12927 1.612442 TGGCTCCTCCCAGGTGTAC 60.612 63.158 0.00 0.00 36.53 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
84 85 3.947612 TTGAGGGAGTATCGTAGGAGT 57.052 47.619 0.00 0.00 34.37 3.85
168 173 1.629043 TCTAGATGTATGGACCGGGC 58.371 55.000 6.32 0.21 0.00 6.13
200 205 5.079689 TCCAACTCATATTACTTGTCGCA 57.920 39.130 0.00 0.00 0.00 5.10
216 221 8.783660 TTCATTACTAGATACTCCATCCAACT 57.216 34.615 0.00 0.00 33.75 3.16
230 235 7.874528 CAGCACATATGTGGATTCATTACTAGA 59.125 37.037 31.63 0.00 45.72 2.43
257 262 5.191722 TGTGGAATGGAAGGAGTATTAGCTT 59.808 40.000 0.00 0.00 0.00 3.74
258 263 4.721776 TGTGGAATGGAAGGAGTATTAGCT 59.278 41.667 0.00 0.00 0.00 3.32
259 264 5.036117 TGTGGAATGGAAGGAGTATTAGC 57.964 43.478 0.00 0.00 0.00 3.09
260 265 7.056635 ACATTGTGGAATGGAAGGAGTATTAG 58.943 38.462 0.00 0.00 43.00 1.73
261 266 6.969043 ACATTGTGGAATGGAAGGAGTATTA 58.031 36.000 0.00 0.00 43.00 0.98
264 269 4.927267 ACATTGTGGAATGGAAGGAGTA 57.073 40.909 0.00 0.00 43.00 2.59
265 270 3.814504 ACATTGTGGAATGGAAGGAGT 57.185 42.857 0.00 0.00 43.00 3.85
266 271 5.450965 GCATTACATTGTGGAATGGAAGGAG 60.451 44.000 14.78 0.00 46.30 3.69
267 272 4.402155 GCATTACATTGTGGAATGGAAGGA 59.598 41.667 14.78 0.00 46.30 3.36
268 273 4.441913 GGCATTACATTGTGGAATGGAAGG 60.442 45.833 14.78 0.00 46.30 3.46
269 274 4.403432 AGGCATTACATTGTGGAATGGAAG 59.597 41.667 14.78 0.00 46.30 3.46
270 275 4.352009 AGGCATTACATTGTGGAATGGAA 58.648 39.130 14.78 0.00 46.30 3.53
271 276 3.979911 AGGCATTACATTGTGGAATGGA 58.020 40.909 14.78 0.00 46.30 3.41
272 277 7.523293 TTATAGGCATTACATTGTGGAATGG 57.477 36.000 14.78 0.28 46.30 3.16
295 300 9.911138 AGCAAAGTTTGATTTTCACAAAAATTT 57.089 22.222 19.82 0.00 43.48 1.82
298 303 9.818796 GTTAGCAAAGTTTGATTTTCACAAAAA 57.181 25.926 19.82 0.00 38.63 1.94
299 304 9.213799 AGTTAGCAAAGTTTGATTTTCACAAAA 57.786 25.926 19.82 0.00 38.63 2.44
300 305 8.770438 AGTTAGCAAAGTTTGATTTTCACAAA 57.230 26.923 19.82 0.00 35.34 2.83
301 306 8.770438 AAGTTAGCAAAGTTTGATTTTCACAA 57.230 26.923 19.82 0.08 0.00 3.33
302 307 8.770438 AAAGTTAGCAAAGTTTGATTTTCACA 57.230 26.923 19.82 0.00 36.96 3.58
324 329 7.360101 CGGTTTTCTCTATACACTTGGTCAAAG 60.360 40.741 0.00 0.00 42.07 2.77
325 330 6.425721 CGGTTTTCTCTATACACTTGGTCAAA 59.574 38.462 0.00 0.00 0.00 2.69
326 331 5.929992 CGGTTTTCTCTATACACTTGGTCAA 59.070 40.000 0.00 0.00 0.00 3.18
327 332 5.011329 ACGGTTTTCTCTATACACTTGGTCA 59.989 40.000 0.00 0.00 0.00 4.02
328 333 5.476614 ACGGTTTTCTCTATACACTTGGTC 58.523 41.667 0.00 0.00 0.00 4.02
329 334 5.245526 AGACGGTTTTCTCTATACACTTGGT 59.754 40.000 0.00 0.00 0.00 3.67
330 335 5.721232 AGACGGTTTTCTCTATACACTTGG 58.279 41.667 0.00 0.00 0.00 3.61
331 336 7.310664 TGTAGACGGTTTTCTCTATACACTTG 58.689 38.462 0.00 0.00 0.00 3.16
332 337 7.458409 TGTAGACGGTTTTCTCTATACACTT 57.542 36.000 0.00 0.00 0.00 3.16
333 338 7.556996 AGATGTAGACGGTTTTCTCTATACACT 59.443 37.037 0.00 0.00 0.00 3.55
334 339 7.705214 AGATGTAGACGGTTTTCTCTATACAC 58.295 38.462 0.00 0.00 0.00 2.90
335 340 7.876936 AGATGTAGACGGTTTTCTCTATACA 57.123 36.000 0.00 0.00 0.00 2.29
336 341 8.834465 TGTAGATGTAGACGGTTTTCTCTATAC 58.166 37.037 0.00 0.00 0.00 1.47
337 342 8.969260 TGTAGATGTAGACGGTTTTCTCTATA 57.031 34.615 0.00 0.00 0.00 1.31
338 343 7.876936 TGTAGATGTAGACGGTTTTCTCTAT 57.123 36.000 0.00 0.00 0.00 1.98
339 344 7.692460 TTGTAGATGTAGACGGTTTTCTCTA 57.308 36.000 0.00 0.00 0.00 2.43
340 345 6.585695 TTGTAGATGTAGACGGTTTTCTCT 57.414 37.500 0.00 0.00 0.00 3.10
341 346 7.434602 GGTATTGTAGATGTAGACGGTTTTCTC 59.565 40.741 0.00 0.00 0.00 2.87
342 347 7.093640 TGGTATTGTAGATGTAGACGGTTTTCT 60.094 37.037 0.00 0.00 0.00 2.52
343 348 7.037438 TGGTATTGTAGATGTAGACGGTTTTC 58.963 38.462 0.00 0.00 0.00 2.29
344 349 6.938507 TGGTATTGTAGATGTAGACGGTTTT 58.061 36.000 0.00 0.00 0.00 2.43
345 350 6.534475 TGGTATTGTAGATGTAGACGGTTT 57.466 37.500 0.00 0.00 0.00 3.27
346 351 6.534475 TTGGTATTGTAGATGTAGACGGTT 57.466 37.500 0.00 0.00 0.00 4.44
347 352 6.071221 TGTTTGGTATTGTAGATGTAGACGGT 60.071 38.462 0.00 0.00 0.00 4.83
348 353 6.334989 TGTTTGGTATTGTAGATGTAGACGG 58.665 40.000 0.00 0.00 0.00 4.79
349 354 7.491372 ACATGTTTGGTATTGTAGATGTAGACG 59.509 37.037 0.00 0.00 0.00 4.18
350 355 8.718102 ACATGTTTGGTATTGTAGATGTAGAC 57.282 34.615 0.00 0.00 0.00 2.59
351 356 9.811995 GTACATGTTTGGTATTGTAGATGTAGA 57.188 33.333 2.30 0.00 0.00 2.59
352 357 9.594478 TGTACATGTTTGGTATTGTAGATGTAG 57.406 33.333 2.30 0.00 0.00 2.74
354 359 9.461312 AATGTACATGTTTGGTATTGTAGATGT 57.539 29.630 9.63 0.00 31.34 3.06
355 360 9.935682 GAATGTACATGTTTGGTATTGTAGATG 57.064 33.333 9.63 0.00 31.34 2.90
356 361 9.905713 AGAATGTACATGTTTGGTATTGTAGAT 57.094 29.630 9.63 0.00 31.99 1.98
357 362 9.161629 CAGAATGTACATGTTTGGTATTGTAGA 57.838 33.333 9.63 0.00 0.00 2.59
358 363 9.161629 TCAGAATGTACATGTTTGGTATTGTAG 57.838 33.333 9.63 0.00 37.40 2.74
359 364 9.508642 TTCAGAATGTACATGTTTGGTATTGTA 57.491 29.630 9.63 0.00 37.40 2.41
360 365 7.994425 TCAGAATGTACATGTTTGGTATTGT 57.006 32.000 9.63 0.00 37.40 2.71
361 366 9.689976 TTTTCAGAATGTACATGTTTGGTATTG 57.310 29.630 9.63 0.00 37.40 1.90
453 458 9.691362 GTCAAACATTACAAACTTTGACCATAT 57.309 29.630 8.55 0.00 43.35 1.78
458 463 9.739786 CAAAAGTCAAACATTACAAACTTTGAC 57.260 29.630 8.55 12.19 46.84 3.18
459 464 8.439286 GCAAAAGTCAAACATTACAAACTTTGA 58.561 29.630 8.55 0.00 37.12 2.69
460 465 8.226448 TGCAAAAGTCAAACATTACAAACTTTG 58.774 29.630 0.00 0.00 37.12 2.77
461 466 8.316640 TGCAAAAGTCAAACATTACAAACTTT 57.683 26.923 0.00 0.00 38.27 2.66
462 467 7.897575 TGCAAAAGTCAAACATTACAAACTT 57.102 28.000 0.00 0.00 0.00 2.66
463 468 7.897575 TTGCAAAAGTCAAACATTACAAACT 57.102 28.000 0.00 0.00 0.00 2.66
464 469 8.941127 TTTTGCAAAAGTCAAACATTACAAAC 57.059 26.923 20.46 0.00 33.66 2.93
489 494 9.726438 GTTCCATAATGTAGTGCCTATAGATTT 57.274 33.333 0.00 0.00 0.00 2.17
490 495 8.035394 CGTTCCATAATGTAGTGCCTATAGATT 58.965 37.037 0.00 0.00 0.00 2.40
491 496 7.178628 ACGTTCCATAATGTAGTGCCTATAGAT 59.821 37.037 0.00 0.00 32.96 1.98
492 497 6.492429 ACGTTCCATAATGTAGTGCCTATAGA 59.508 38.462 0.00 0.00 32.96 1.98
493 498 6.688578 ACGTTCCATAATGTAGTGCCTATAG 58.311 40.000 0.00 0.00 32.96 1.31
494 499 6.659745 ACGTTCCATAATGTAGTGCCTATA 57.340 37.500 0.00 0.00 32.96 1.31
495 500 5.546621 ACGTTCCATAATGTAGTGCCTAT 57.453 39.130 0.00 0.00 32.96 2.57
496 501 5.010314 CCTACGTTCCATAATGTAGTGCCTA 59.990 44.000 13.60 0.00 46.89 3.93
497 502 3.906720 ACGTTCCATAATGTAGTGCCT 57.093 42.857 0.00 0.00 32.96 4.75
498 503 4.056050 CCTACGTTCCATAATGTAGTGCC 58.944 47.826 13.60 0.00 46.89 5.01
499 504 4.056050 CCCTACGTTCCATAATGTAGTGC 58.944 47.826 13.60 0.00 46.89 4.40
500 505 5.068723 ACTCCCTACGTTCCATAATGTAGTG 59.931 44.000 13.60 5.57 46.89 2.74
501 506 5.206587 ACTCCCTACGTTCCATAATGTAGT 58.793 41.667 13.60 0.00 46.89 2.73
503 508 6.367983 AGTACTCCCTACGTTCCATAATGTA 58.632 40.000 0.00 0.00 36.28 2.29
504 509 5.206587 AGTACTCCCTACGTTCCATAATGT 58.793 41.667 0.00 0.00 38.41 2.71
505 510 5.786264 AGTACTCCCTACGTTCCATAATG 57.214 43.478 0.00 0.00 0.00 1.90
506 511 6.608922 ACTAGTACTCCCTACGTTCCATAAT 58.391 40.000 0.00 0.00 0.00 1.28
507 512 6.006275 ACTAGTACTCCCTACGTTCCATAA 57.994 41.667 0.00 0.00 0.00 1.90
508 513 5.636903 ACTAGTACTCCCTACGTTCCATA 57.363 43.478 0.00 0.00 0.00 2.74
509 514 4.516652 ACTAGTACTCCCTACGTTCCAT 57.483 45.455 0.00 0.00 0.00 3.41
510 515 4.307032 AACTAGTACTCCCTACGTTCCA 57.693 45.455 0.00 0.00 0.00 3.53
511 516 4.460731 ACAAACTAGTACTCCCTACGTTCC 59.539 45.833 0.00 0.00 0.00 3.62
512 517 5.635417 ACAAACTAGTACTCCCTACGTTC 57.365 43.478 0.00 0.00 0.00 3.95
513 518 6.218746 CAAACAAACTAGTACTCCCTACGTT 58.781 40.000 0.00 0.00 0.00 3.99
514 519 5.776744 CAAACAAACTAGTACTCCCTACGT 58.223 41.667 0.00 0.00 0.00 3.57
515 520 4.624452 GCAAACAAACTAGTACTCCCTACG 59.376 45.833 0.00 0.00 0.00 3.51
516 521 5.544650 TGCAAACAAACTAGTACTCCCTAC 58.455 41.667 0.00 0.00 0.00 3.18
517 522 5.541101 TCTGCAAACAAACTAGTACTCCCTA 59.459 40.000 0.00 0.00 0.00 3.53
518 523 4.347000 TCTGCAAACAAACTAGTACTCCCT 59.653 41.667 0.00 0.00 0.00 4.20
519 524 4.451435 GTCTGCAAACAAACTAGTACTCCC 59.549 45.833 0.00 0.00 0.00 4.30
520 525 4.150098 CGTCTGCAAACAAACTAGTACTCC 59.850 45.833 0.00 0.00 0.00 3.85
521 526 4.376109 GCGTCTGCAAACAAACTAGTACTC 60.376 45.833 0.00 0.00 42.15 2.59
668 1314 4.708421 ACCTCCTACGACAGCAACTAATAA 59.292 41.667 0.00 0.00 0.00 1.40
781 1427 3.075005 TAGGAGCACAGCCGGGAC 61.075 66.667 2.18 0.00 0.00 4.46
884 1534 6.991938 ACTGCTAGCTAGTACTACTACGTAT 58.008 40.000 21.62 0.00 0.00 3.06
886 1536 5.275067 ACTGCTAGCTAGTACTACTACGT 57.725 43.478 21.62 7.16 0.00 3.57
894 1544 5.285607 CGTTTGTGTTACTGCTAGCTAGTAC 59.714 44.000 21.62 12.42 30.81 2.73
946 1606 3.124636 GTGTAGTGGGTGTAAATTGCTCG 59.875 47.826 0.00 0.00 0.00 5.03
2653 5644 6.823689 AGCACAAGGATACCACTACTATTTTG 59.176 38.462 0.00 0.00 37.17 2.44
2950 5992 9.582648 AGGGTAAGTTTGTGTATAAAAATGTCT 57.417 29.630 0.00 0.00 0.00 3.41
3099 6142 9.364989 CAATACCGAAACATGAAATAATTGGTT 57.635 29.630 0.00 0.00 0.00 3.67
3747 6853 6.788598 TTGGAACATACAAACATGCCATAT 57.211 33.333 0.00 0.00 39.30 1.78
3748 6854 6.788598 ATTGGAACATACAAACATGCCATA 57.211 33.333 0.00 0.00 39.30 2.74
3749 6855 5.680594 ATTGGAACATACAAACATGCCAT 57.319 34.783 0.00 0.00 39.30 4.40
3750 6856 6.596309 TTATTGGAACATACAAACATGCCA 57.404 33.333 0.00 0.00 39.30 4.92
4017 12444 9.638176 AATCTTCCTATTGCAAATCTATTCACT 57.362 29.630 1.71 0.00 0.00 3.41
4205 12633 0.541392 AACCATCTGCATGCTACGGA 59.459 50.000 20.33 11.85 0.00 4.69
4227 12655 4.141711 GGCACTCCCAAGTCATTGTAGATA 60.142 45.833 0.00 0.00 34.39 1.98
4260 12688 3.555324 TGTTGAGGAGTGCCGGCA 61.555 61.111 29.03 29.03 39.96 5.69
4280 12708 0.958091 CTAGATGACTGCGAGGAGGG 59.042 60.000 0.00 0.00 0.00 4.30
4283 12711 2.097629 CGTTTCTAGATGACTGCGAGGA 59.902 50.000 0.00 0.00 0.00 3.71
4288 12716 1.134670 AGGGCGTTTCTAGATGACTGC 60.135 52.381 0.00 4.55 0.00 4.40
4289 12717 2.932614 CAAGGGCGTTTCTAGATGACTG 59.067 50.000 0.00 0.00 0.00 3.51
4321 12752 0.394899 GCAAAGGTAGATGCCCTGCT 60.395 55.000 4.90 0.00 35.90 4.24
4368 12807 2.287829 GGACACCCGATCAACCTCT 58.712 57.895 0.00 0.00 0.00 3.69
4369 12808 4.934989 GGACACCCGATCAACCTC 57.065 61.111 0.00 0.00 0.00 3.85
4390 12829 2.836360 CATGCTGATGGGCCACCC 60.836 66.667 9.28 4.25 45.71 4.61
4392 12831 2.475466 CGTCATGCTGATGGGCCAC 61.475 63.158 9.28 3.39 29.96 5.01
4393 12832 2.124612 CGTCATGCTGATGGGCCA 60.125 61.111 9.61 9.61 29.96 5.36
4395 12834 2.475466 CCACGTCATGCTGATGGGC 61.475 63.158 9.30 0.00 35.51 5.36
4398 12837 1.865340 CAGATCCACGTCATGCTGATG 59.135 52.381 0.00 4.45 39.24 3.07
4399 12838 1.202615 CCAGATCCACGTCATGCTGAT 60.203 52.381 6.59 0.00 0.00 2.90
4401 12840 1.434622 GCCAGATCCACGTCATGCTG 61.435 60.000 0.00 0.00 0.00 4.41
4402 12841 1.153289 GCCAGATCCACGTCATGCT 60.153 57.895 0.00 0.00 0.00 3.79
4403 12842 1.153289 AGCCAGATCCACGTCATGC 60.153 57.895 0.00 0.00 0.00 4.06
4404 12843 0.812811 CCAGCCAGATCCACGTCATG 60.813 60.000 0.00 0.00 0.00 3.07
4405 12844 1.267574 ACCAGCCAGATCCACGTCAT 61.268 55.000 0.00 0.00 0.00 3.06
4421 12860 3.798511 TCCACGTGTTGGCCACCA 61.799 61.111 15.65 0.00 46.47 4.17
4488 12927 1.470979 CGTGAGATACAGTTTCCCCGG 60.471 57.143 0.00 0.00 0.00 5.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.