Multiple sequence alignment - TraesCS4D01G346700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G346700 chr4D 100.000 5616 0 0 1 5616 500496923 500502538 0.000000e+00 10371.0
1 TraesCS4D01G346700 chr4D 88.298 94 10 1 5493 5585 43672553 43672646 1.650000e-20 111.0
2 TraesCS4D01G346700 chr4B 93.712 4978 188 63 690 5616 644376028 644371125 0.000000e+00 7343.0
3 TraesCS4D01G346700 chr4B 85.116 215 15 10 265 478 644376669 644376471 2.650000e-48 204.0
4 TraesCS4D01G346700 chr4B 83.408 223 31 5 480 697 644376278 644376057 9.540000e-48 202.0
5 TraesCS4D01G346700 chr4B 98.305 59 1 0 5558 5616 644475224 644475282 2.770000e-18 104.0
6 TraesCS4D01G346700 chr5A 92.055 4745 211 74 786 5464 681462826 681467470 0.000000e+00 6521.0
7 TraesCS4D01G346700 chr5A 91.228 171 14 1 5446 5616 681485450 681485619 1.220000e-56 231.0
8 TraesCS4D01G346700 chr5A 81.659 229 21 6 447 655 681461687 681461914 2.690000e-38 171.0
9 TraesCS4D01G346700 chr5A 84.615 104 16 0 527 630 104143955 104143852 2.770000e-18 104.0
10 TraesCS4D01G346700 chr7B 81.065 338 37 11 5279 5616 477964315 477964625 1.560000e-60 244.0
11 TraesCS4D01G346700 chr4A 89.677 155 16 0 4058 4212 625534043 625534197 1.230000e-46 198.0
12 TraesCS4D01G346700 chr4A 74.615 260 48 12 4320 4570 625534230 625534480 1.290000e-16 99.0
13 TraesCS4D01G346700 chr5B 89.032 155 17 0 4058 4212 685436232 685436386 5.740000e-45 193.0
14 TraesCS4D01G346700 chr5B 73.432 271 54 13 4315 4570 685436510 685436777 1.000000e-12 86.1
15 TraesCS4D01G346700 chr5B 77.143 140 31 1 5408 5547 364111351 364111213 4.660000e-11 80.5
16 TraesCS4D01G346700 chr6D 81.452 248 33 7 400 637 304115810 304115566 2.070000e-44 191.0
17 TraesCS4D01G346700 chr6D 81.818 143 26 0 4069 4211 34985569 34985427 2.750000e-23 121.0
18 TraesCS4D01G346700 chr5D 86.726 113 13 2 525 636 547374753 547374642 2.120000e-24 124.0
19 TraesCS4D01G346700 chr5D 84.694 98 13 2 5494 5590 399939462 399939558 4.630000e-16 97.1
20 TraesCS4D01G346700 chr5D 80.556 108 16 5 4315 4418 543596915 543596809 1.680000e-10 78.7
21 TraesCS4D01G346700 chr6A 81.633 147 26 1 4066 4211 39172093 39171947 2.750000e-23 121.0
22 TraesCS4D01G346700 chr2A 85.217 115 16 1 525 638 513092456 513092570 3.550000e-22 117.0
23 TraesCS4D01G346700 chr7A 82.114 123 19 3 508 628 525178155 525178034 9.950000e-18 102.0
24 TraesCS4D01G346700 chr3B 81.600 125 15 8 5494 5615 645813694 645813813 4.630000e-16 97.1
25 TraesCS4D01G346700 chr3B 81.609 87 14 2 529 613 400325257 400325343 2.810000e-08 71.3
26 TraesCS4D01G346700 chr3A 82.979 94 14 2 5493 5585 724019459 724019551 3.610000e-12 84.2
27 TraesCS4D01G346700 chr2D 79.832 119 21 2 5493 5610 412283928 412283812 3.610000e-12 84.2
28 TraesCS4D01G346700 chr3D 82.759 87 13 2 529 613 319839460 319839374 6.030000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G346700 chr4D 500496923 500502538 5615 False 10371 10371 100.000 1 5616 1 chr4D.!!$F2 5615
1 TraesCS4D01G346700 chr4B 644371125 644376669 5544 True 2583 7343 87.412 265 5616 3 chr4B.!!$R1 5351
2 TraesCS4D01G346700 chr5A 681461687 681467470 5783 False 3346 6521 86.857 447 5464 2 chr5A.!!$F2 5017

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
260 261 0.034477 GGGTGGACCATGGTTGTAGG 60.034 60.000 20.85 0.00 39.85 3.18 F
261 262 0.679960 GGTGGACCATGGTTGTAGGC 60.680 60.000 20.85 4.46 35.64 3.93 F
262 263 1.024579 GTGGACCATGGTTGTAGGCG 61.025 60.000 20.85 0.00 0.00 5.52 F
1617 2643 1.614241 GGGTGACGCTGTACCAGGAT 61.614 60.000 0.00 0.00 38.74 3.24 F
2282 3318 1.001268 GCAATGAGCTGATGATGGCAG 60.001 52.381 0.00 0.00 41.15 4.85 F
3436 4494 0.035056 AGCCCCGGACTCTGAAATTG 60.035 55.000 0.73 0.00 0.00 2.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1566 2592 1.188863 GGAGCGGGAAGTAGGTGTTA 58.811 55.000 0.00 0.00 0.00 2.41 R
1995 3027 1.401539 GCCAACGATGAAACTTGGAGC 60.402 52.381 3.11 0.00 37.25 4.70 R
1996 3028 2.154462 AGCCAACGATGAAACTTGGAG 58.846 47.619 3.11 0.00 37.25 3.86 R
2898 3934 0.801251 GCACTCCAACATGAGACTGC 59.199 55.000 0.00 0.81 36.22 4.40 R
4251 5346 1.114627 GGTGAGGGAATGGATTTGGC 58.885 55.000 0.00 0.00 0.00 4.52 R
4636 5732 0.023732 CGTGCGTCTACGAATGCTTG 59.976 55.000 6.71 0.00 46.46 4.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 7.484993 TCTCCGTTCTATCTAGCTATCTAGT 57.515 40.000 0.00 0.00 42.28 2.57
26 27 7.909518 TCTCCGTTCTATCTAGCTATCTAGTT 58.090 38.462 0.00 0.00 42.28 2.24
27 28 8.377034 TCTCCGTTCTATCTAGCTATCTAGTTT 58.623 37.037 0.00 0.00 42.28 2.66
28 29 8.921353 TCCGTTCTATCTAGCTATCTAGTTTT 57.079 34.615 0.00 0.00 42.28 2.43
58 59 7.962964 ATGTATCTAATTTATGTGTCGGGTG 57.037 36.000 0.00 0.00 0.00 4.61
59 60 7.114866 TGTATCTAATTTATGTGTCGGGTGA 57.885 36.000 0.00 0.00 0.00 4.02
60 61 7.732025 TGTATCTAATTTATGTGTCGGGTGAT 58.268 34.615 0.00 0.00 0.00 3.06
61 62 7.655732 TGTATCTAATTTATGTGTCGGGTGATG 59.344 37.037 0.00 0.00 0.00 3.07
62 63 6.228616 TCTAATTTATGTGTCGGGTGATGA 57.771 37.500 0.00 0.00 0.00 2.92
63 64 6.645306 TCTAATTTATGTGTCGGGTGATGAA 58.355 36.000 0.00 0.00 0.00 2.57
64 65 5.560966 AATTTATGTGTCGGGTGATGAAC 57.439 39.130 0.00 0.00 0.00 3.18
65 66 3.973206 TTATGTGTCGGGTGATGAACT 57.027 42.857 0.00 0.00 0.00 3.01
66 67 2.859165 ATGTGTCGGGTGATGAACTT 57.141 45.000 0.00 0.00 0.00 2.66
67 68 1.877637 TGTGTCGGGTGATGAACTTG 58.122 50.000 0.00 0.00 0.00 3.16
68 69 0.517316 GTGTCGGGTGATGAACTTGC 59.483 55.000 0.00 0.00 0.00 4.01
69 70 0.396435 TGTCGGGTGATGAACTTGCT 59.604 50.000 0.00 0.00 0.00 3.91
70 71 1.079503 GTCGGGTGATGAACTTGCTC 58.920 55.000 0.00 0.00 0.00 4.26
71 72 0.976641 TCGGGTGATGAACTTGCTCT 59.023 50.000 0.00 0.00 0.00 4.09
72 73 1.347707 TCGGGTGATGAACTTGCTCTT 59.652 47.619 0.00 0.00 0.00 2.85
73 74 2.154462 CGGGTGATGAACTTGCTCTTT 58.846 47.619 0.00 0.00 0.00 2.52
74 75 2.554032 CGGGTGATGAACTTGCTCTTTT 59.446 45.455 0.00 0.00 0.00 2.27
75 76 3.610114 CGGGTGATGAACTTGCTCTTTTG 60.610 47.826 0.00 0.00 0.00 2.44
76 77 3.305608 GGGTGATGAACTTGCTCTTTTGG 60.306 47.826 0.00 0.00 0.00 3.28
77 78 3.305608 GGTGATGAACTTGCTCTTTTGGG 60.306 47.826 0.00 0.00 0.00 4.12
84 85 4.018409 GCTCTTTTGGGCCCGATT 57.982 55.556 19.37 0.00 40.88 3.34
85 86 1.512694 GCTCTTTTGGGCCCGATTG 59.487 57.895 19.37 11.34 40.88 2.67
86 87 1.250840 GCTCTTTTGGGCCCGATTGT 61.251 55.000 19.37 0.00 40.88 2.71
87 88 1.953311 GCTCTTTTGGGCCCGATTGTA 60.953 52.381 19.37 0.00 40.88 2.41
88 89 1.743394 CTCTTTTGGGCCCGATTGTAC 59.257 52.381 19.37 0.00 0.00 2.90
89 90 0.450184 CTTTTGGGCCCGATTGTACG 59.550 55.000 19.37 0.00 0.00 3.67
90 91 0.036448 TTTTGGGCCCGATTGTACGA 59.964 50.000 19.37 0.00 35.09 3.43
91 92 0.036448 TTTGGGCCCGATTGTACGAA 59.964 50.000 19.37 0.00 35.09 3.85
92 93 0.036448 TTGGGCCCGATTGTACGAAA 59.964 50.000 19.37 0.00 35.09 3.46
93 94 0.036448 TGGGCCCGATTGTACGAAAA 59.964 50.000 19.37 0.00 35.09 2.29
94 95 0.448990 GGGCCCGATTGTACGAAAAC 59.551 55.000 5.69 0.00 35.09 2.43
95 96 1.445871 GGCCCGATTGTACGAAAACT 58.554 50.000 0.00 0.00 35.09 2.66
96 97 1.808343 GGCCCGATTGTACGAAAACTT 59.192 47.619 0.00 0.00 35.09 2.66
97 98 2.413634 GGCCCGATTGTACGAAAACTTG 60.414 50.000 0.00 0.00 35.09 3.16
98 99 2.846693 CCCGATTGTACGAAAACTTGC 58.153 47.619 0.00 0.00 35.09 4.01
99 100 2.482721 CCCGATTGTACGAAAACTTGCT 59.517 45.455 0.00 0.00 35.09 3.91
100 101 3.424433 CCCGATTGTACGAAAACTTGCTC 60.424 47.826 0.00 0.00 35.09 4.26
101 102 3.432252 CCGATTGTACGAAAACTTGCTCT 59.568 43.478 0.00 0.00 35.09 4.09
102 103 4.084013 CCGATTGTACGAAAACTTGCTCTT 60.084 41.667 0.00 0.00 35.09 2.85
103 104 5.440685 CGATTGTACGAAAACTTGCTCTTT 58.559 37.500 0.00 0.00 35.09 2.52
104 105 5.907391 CGATTGTACGAAAACTTGCTCTTTT 59.093 36.000 0.00 0.00 35.09 2.27
105 106 6.129717 CGATTGTACGAAAACTTGCTCTTTTG 60.130 38.462 0.00 0.00 35.09 2.44
106 107 4.915704 TGTACGAAAACTTGCTCTTTTGG 58.084 39.130 0.00 0.00 0.00 3.28
107 108 3.436700 ACGAAAACTTGCTCTTTTGGG 57.563 42.857 0.00 0.00 0.00 4.12
108 109 2.758423 ACGAAAACTTGCTCTTTTGGGT 59.242 40.909 0.00 0.00 0.00 4.51
109 110 3.181490 ACGAAAACTTGCTCTTTTGGGTC 60.181 43.478 0.00 0.00 0.00 4.46
110 111 3.717707 GAAAACTTGCTCTTTTGGGTCC 58.282 45.455 0.00 0.00 0.00 4.46
111 112 1.318576 AACTTGCTCTTTTGGGTCCG 58.681 50.000 0.00 0.00 0.00 4.79
112 113 0.537371 ACTTGCTCTTTTGGGTCCGG 60.537 55.000 0.00 0.00 0.00 5.14
113 114 0.537371 CTTGCTCTTTTGGGTCCGGT 60.537 55.000 0.00 0.00 0.00 5.28
114 115 0.106419 TTGCTCTTTTGGGTCCGGTT 60.106 50.000 0.00 0.00 0.00 4.44
115 116 0.106419 TGCTCTTTTGGGTCCGGTTT 60.106 50.000 0.00 0.00 0.00 3.27
116 117 1.143277 TGCTCTTTTGGGTCCGGTTTA 59.857 47.619 0.00 0.00 0.00 2.01
117 118 2.224917 TGCTCTTTTGGGTCCGGTTTAT 60.225 45.455 0.00 0.00 0.00 1.40
118 119 2.163613 GCTCTTTTGGGTCCGGTTTATG 59.836 50.000 0.00 0.00 0.00 1.90
119 120 2.163613 CTCTTTTGGGTCCGGTTTATGC 59.836 50.000 0.00 0.00 0.00 3.14
120 121 2.167662 CTTTTGGGTCCGGTTTATGCT 58.832 47.619 0.00 0.00 0.00 3.79
121 122 3.009253 TCTTTTGGGTCCGGTTTATGCTA 59.991 43.478 0.00 0.00 0.00 3.49
122 123 3.655615 TTTGGGTCCGGTTTATGCTAT 57.344 42.857 0.00 0.00 0.00 2.97
123 124 4.774660 TTTGGGTCCGGTTTATGCTATA 57.225 40.909 0.00 0.00 0.00 1.31
124 125 4.986054 TTGGGTCCGGTTTATGCTATAT 57.014 40.909 0.00 0.00 0.00 0.86
125 126 6.436738 TTTGGGTCCGGTTTATGCTATATA 57.563 37.500 0.00 0.00 0.00 0.86
126 127 6.630203 TTGGGTCCGGTTTATGCTATATAT 57.370 37.500 0.00 0.00 0.00 0.86
127 128 5.984725 TGGGTCCGGTTTATGCTATATATG 58.015 41.667 0.00 0.00 0.00 1.78
128 129 5.486063 TGGGTCCGGTTTATGCTATATATGT 59.514 40.000 0.00 0.00 0.00 2.29
129 130 6.668718 TGGGTCCGGTTTATGCTATATATGTA 59.331 38.462 0.00 0.00 0.00 2.29
130 131 7.346175 TGGGTCCGGTTTATGCTATATATGTAT 59.654 37.037 0.00 0.00 0.00 2.29
131 132 7.656137 GGGTCCGGTTTATGCTATATATGTATG 59.344 40.741 0.00 0.00 0.00 2.39
132 133 8.202137 GGTCCGGTTTATGCTATATATGTATGT 58.798 37.037 0.00 0.00 0.00 2.29
133 134 9.595823 GTCCGGTTTATGCTATATATGTATGTT 57.404 33.333 0.00 0.00 0.00 2.71
134 135 9.594478 TCCGGTTTATGCTATATATGTATGTTG 57.406 33.333 0.00 0.00 0.00 3.33
135 136 9.594478 CCGGTTTATGCTATATATGTATGTTGA 57.406 33.333 0.00 0.00 0.00 3.18
142 143 8.570068 TGCTATATATGTATGTTGACCTACGA 57.430 34.615 0.00 0.00 0.00 3.43
143 144 8.674607 TGCTATATATGTATGTTGACCTACGAG 58.325 37.037 0.00 0.00 0.00 4.18
144 145 8.675504 GCTATATATGTATGTTGACCTACGAGT 58.324 37.037 0.00 0.00 0.00 4.18
147 148 3.581755 TGTATGTTGACCTACGAGTTGC 58.418 45.455 0.00 0.00 0.00 4.17
148 149 2.831685 ATGTTGACCTACGAGTTGCA 57.168 45.000 0.00 0.00 0.00 4.08
149 150 2.831685 TGTTGACCTACGAGTTGCAT 57.168 45.000 0.00 0.00 0.00 3.96
150 151 2.412870 TGTTGACCTACGAGTTGCATG 58.587 47.619 0.00 0.00 0.00 4.06
151 152 1.732259 GTTGACCTACGAGTTGCATGG 59.268 52.381 0.00 0.00 0.00 3.66
152 153 1.262417 TGACCTACGAGTTGCATGGA 58.738 50.000 0.00 0.00 0.00 3.41
153 154 1.831106 TGACCTACGAGTTGCATGGAT 59.169 47.619 0.00 0.00 0.00 3.41
154 155 2.159099 TGACCTACGAGTTGCATGGATC 60.159 50.000 0.00 0.00 0.00 3.36
155 156 1.202417 ACCTACGAGTTGCATGGATCG 60.202 52.381 8.46 8.46 40.86 3.69
157 158 2.034179 CCTACGAGTTGCATGGATCGTA 59.966 50.000 18.21 18.21 45.76 3.43
158 159 2.890808 ACGAGTTGCATGGATCGTAT 57.109 45.000 13.31 0.00 45.76 3.06
159 160 2.473816 ACGAGTTGCATGGATCGTATG 58.526 47.619 13.31 4.66 45.76 2.39
160 161 1.794701 CGAGTTGCATGGATCGTATGG 59.205 52.381 2.41 0.00 0.00 2.74
161 162 2.545742 CGAGTTGCATGGATCGTATGGA 60.546 50.000 2.41 5.07 0.00 3.41
162 163 3.668447 GAGTTGCATGGATCGTATGGAT 58.332 45.455 9.72 0.00 38.35 3.41
163 164 4.067896 GAGTTGCATGGATCGTATGGATT 58.932 43.478 9.72 1.03 34.82 3.01
164 165 3.817084 AGTTGCATGGATCGTATGGATTG 59.183 43.478 9.72 0.00 34.82 2.67
165 166 2.781923 TGCATGGATCGTATGGATTGG 58.218 47.619 9.72 0.00 34.82 3.16
166 167 2.086869 GCATGGATCGTATGGATTGGG 58.913 52.381 9.72 0.00 34.82 4.12
167 168 2.715046 CATGGATCGTATGGATTGGGG 58.285 52.381 1.68 0.00 34.82 4.96
168 169 1.064003 TGGATCGTATGGATTGGGGG 58.936 55.000 0.00 0.00 34.82 5.40
169 170 0.322546 GGATCGTATGGATTGGGGGC 60.323 60.000 0.00 0.00 34.82 5.80
170 171 0.322546 GATCGTATGGATTGGGGGCC 60.323 60.000 0.00 0.00 34.82 5.80
171 172 0.772124 ATCGTATGGATTGGGGGCCT 60.772 55.000 0.84 0.00 28.32 5.19
172 173 1.228245 CGTATGGATTGGGGGCCTG 60.228 63.158 0.84 0.00 0.00 4.85
173 174 1.705002 CGTATGGATTGGGGGCCTGA 61.705 60.000 0.84 0.00 0.00 3.86
174 175 0.779997 GTATGGATTGGGGGCCTGAT 59.220 55.000 0.84 0.00 0.00 2.90
175 176 1.992557 GTATGGATTGGGGGCCTGATA 59.007 52.381 0.84 0.00 0.00 2.15
176 177 1.777517 ATGGATTGGGGGCCTGATAT 58.222 50.000 0.84 0.00 0.00 1.63
177 178 1.544764 TGGATTGGGGGCCTGATATT 58.455 50.000 0.84 0.00 0.00 1.28
178 179 1.865595 TGGATTGGGGGCCTGATATTT 59.134 47.619 0.84 0.00 0.00 1.40
179 180 2.250924 GGATTGGGGGCCTGATATTTG 58.749 52.381 0.84 0.00 0.00 2.32
180 181 2.158325 GGATTGGGGGCCTGATATTTGA 60.158 50.000 0.84 0.00 0.00 2.69
181 182 2.754012 TTGGGGGCCTGATATTTGAG 57.246 50.000 0.84 0.00 0.00 3.02
182 183 0.852842 TGGGGGCCTGATATTTGAGG 59.147 55.000 0.84 0.00 0.00 3.86
183 184 1.149101 GGGGGCCTGATATTTGAGGA 58.851 55.000 0.84 0.00 0.00 3.71
184 185 1.202940 GGGGGCCTGATATTTGAGGAC 60.203 57.143 0.84 0.00 36.52 3.85
187 188 3.515602 GGCCTGATATTTGAGGACCAT 57.484 47.619 0.00 0.00 29.99 3.55
188 189 3.152341 GGCCTGATATTTGAGGACCATG 58.848 50.000 0.00 0.00 29.99 3.66
189 190 3.181440 GGCCTGATATTTGAGGACCATGA 60.181 47.826 0.00 0.00 29.99 3.07
190 191 4.508047 GGCCTGATATTTGAGGACCATGAT 60.508 45.833 0.00 0.00 29.99 2.45
191 192 5.075493 GCCTGATATTTGAGGACCATGATT 58.925 41.667 0.00 0.00 0.00 2.57
192 193 5.048224 GCCTGATATTTGAGGACCATGATTG 60.048 44.000 0.00 0.00 0.00 2.67
193 194 5.048224 CCTGATATTTGAGGACCATGATTGC 60.048 44.000 0.00 0.00 0.00 3.56
194 195 4.516321 TGATATTTGAGGACCATGATTGCG 59.484 41.667 0.00 0.00 0.00 4.85
195 196 1.462616 TTTGAGGACCATGATTGCGG 58.537 50.000 0.00 0.00 0.00 5.69
196 197 0.617935 TTGAGGACCATGATTGCGGA 59.382 50.000 0.00 0.00 0.00 5.54
197 198 0.107703 TGAGGACCATGATTGCGGAC 60.108 55.000 0.00 0.00 0.00 4.79
198 199 0.107703 GAGGACCATGATTGCGGACA 60.108 55.000 0.00 0.00 0.00 4.02
199 200 0.327924 AGGACCATGATTGCGGACAA 59.672 50.000 0.00 0.00 40.87 3.18
200 201 0.734889 GGACCATGATTGCGGACAAG 59.265 55.000 0.00 0.00 39.69 3.16
201 202 1.678728 GGACCATGATTGCGGACAAGA 60.679 52.381 0.00 0.00 39.69 3.02
202 203 2.083774 GACCATGATTGCGGACAAGAA 58.916 47.619 0.00 0.00 39.69 2.52
203 204 1.812571 ACCATGATTGCGGACAAGAAC 59.187 47.619 0.00 0.00 39.69 3.01
204 205 1.811965 CCATGATTGCGGACAAGAACA 59.188 47.619 0.00 0.00 39.69 3.18
205 206 2.228582 CCATGATTGCGGACAAGAACAA 59.771 45.455 0.00 0.00 39.69 2.83
206 207 3.305267 CCATGATTGCGGACAAGAACAAA 60.305 43.478 0.00 0.00 39.69 2.83
207 208 4.487948 CATGATTGCGGACAAGAACAAAT 58.512 39.130 0.00 0.00 39.69 2.32
208 209 5.392919 CCATGATTGCGGACAAGAACAAATA 60.393 40.000 0.00 0.00 39.69 1.40
209 210 5.295431 TGATTGCGGACAAGAACAAATAG 57.705 39.130 0.00 0.00 39.69 1.73
210 211 4.155826 TGATTGCGGACAAGAACAAATAGG 59.844 41.667 0.00 0.00 39.69 2.57
211 212 2.432444 TGCGGACAAGAACAAATAGGG 58.568 47.619 0.00 0.00 0.00 3.53
212 213 1.743394 GCGGACAAGAACAAATAGGGG 59.257 52.381 0.00 0.00 0.00 4.79
213 214 2.365582 CGGACAAGAACAAATAGGGGG 58.634 52.381 0.00 0.00 0.00 5.40
214 215 2.290705 CGGACAAGAACAAATAGGGGGT 60.291 50.000 0.00 0.00 0.00 4.95
215 216 3.089284 GGACAAGAACAAATAGGGGGTG 58.911 50.000 0.00 0.00 0.00 4.61
216 217 3.245122 GGACAAGAACAAATAGGGGGTGA 60.245 47.826 0.00 0.00 0.00 4.02
217 218 4.569865 GGACAAGAACAAATAGGGGGTGAT 60.570 45.833 0.00 0.00 0.00 3.06
218 219 4.600062 ACAAGAACAAATAGGGGGTGATC 58.400 43.478 0.00 0.00 0.00 2.92
219 220 4.044065 ACAAGAACAAATAGGGGGTGATCA 59.956 41.667 0.00 0.00 0.00 2.92
220 221 4.510167 AGAACAAATAGGGGGTGATCAG 57.490 45.455 0.00 0.00 0.00 2.90
221 222 3.852578 AGAACAAATAGGGGGTGATCAGT 59.147 43.478 0.00 0.00 0.00 3.41
222 223 3.933861 ACAAATAGGGGGTGATCAGTC 57.066 47.619 0.00 0.00 0.00 3.51
223 224 3.189606 ACAAATAGGGGGTGATCAGTCA 58.810 45.455 0.00 0.00 0.00 3.41
234 235 2.597455 TGATCAGTCACTGTCCACAGA 58.403 47.619 13.75 0.00 46.59 3.41
235 236 3.168292 TGATCAGTCACTGTCCACAGAT 58.832 45.455 13.75 0.00 46.59 2.90
236 237 4.344104 TGATCAGTCACTGTCCACAGATA 58.656 43.478 13.75 0.00 46.59 1.98
237 238 4.958581 TGATCAGTCACTGTCCACAGATAT 59.041 41.667 13.75 0.00 46.59 1.63
238 239 6.129179 TGATCAGTCACTGTCCACAGATATA 58.871 40.000 13.75 0.00 46.59 0.86
239 240 6.779539 TGATCAGTCACTGTCCACAGATATAT 59.220 38.462 13.75 0.00 46.59 0.86
240 241 7.944554 TGATCAGTCACTGTCCACAGATATATA 59.055 37.037 13.75 0.00 46.59 0.86
241 242 7.751768 TCAGTCACTGTCCACAGATATATAG 57.248 40.000 13.75 0.00 46.59 1.31
242 243 6.717084 TCAGTCACTGTCCACAGATATATAGG 59.283 42.308 13.75 0.00 46.59 2.57
243 244 6.013379 AGTCACTGTCCACAGATATATAGGG 58.987 44.000 13.75 0.00 46.59 3.53
244 245 5.775701 GTCACTGTCCACAGATATATAGGGT 59.224 44.000 13.75 0.00 46.59 4.34
245 246 5.775195 TCACTGTCCACAGATATATAGGGTG 59.225 44.000 13.75 0.00 46.59 4.61
252 253 5.982356 CACAGATATATAGGGTGGACCATG 58.018 45.833 0.00 0.00 43.89 3.66
253 254 5.032846 ACAGATATATAGGGTGGACCATGG 58.967 45.833 11.19 11.19 43.89 3.66
254 255 5.032846 CAGATATATAGGGTGGACCATGGT 58.967 45.833 19.89 19.89 43.89 3.55
255 256 5.488919 CAGATATATAGGGTGGACCATGGTT 59.511 44.000 20.85 4.01 43.89 3.67
256 257 5.488919 AGATATATAGGGTGGACCATGGTTG 59.511 44.000 20.85 0.00 43.89 3.77
257 258 1.681229 ATAGGGTGGACCATGGTTGT 58.319 50.000 20.85 0.00 43.89 3.32
258 259 2.345782 TAGGGTGGACCATGGTTGTA 57.654 50.000 20.85 5.67 43.89 2.41
259 260 0.991920 AGGGTGGACCATGGTTGTAG 59.008 55.000 20.85 0.00 43.89 2.74
260 261 0.034477 GGGTGGACCATGGTTGTAGG 60.034 60.000 20.85 0.00 39.85 3.18
261 262 0.679960 GGTGGACCATGGTTGTAGGC 60.680 60.000 20.85 4.46 35.64 3.93
262 263 1.024579 GTGGACCATGGTTGTAGGCG 61.025 60.000 20.85 0.00 0.00 5.52
263 264 2.112815 GGACCATGGTTGTAGGCGC 61.113 63.158 20.85 0.00 0.00 6.53
277 278 5.013568 TGTAGGCGCTTTTAGCTAATGTA 57.986 39.130 7.64 0.00 39.60 2.29
279 280 5.465390 TGTAGGCGCTTTTAGCTAATGTATG 59.535 40.000 7.64 0.00 39.60 2.39
331 332 8.592998 CGCTAAAACTCGAGATATTTACTTTGT 58.407 33.333 21.68 0.00 0.00 2.83
356 357 3.242712 GTGACAATTGTTTTGAGCCAACG 59.757 43.478 13.36 0.00 0.00 4.10
405 406 7.487484 TCAAACAATAAGACTGTGAAAATGCA 58.513 30.769 0.00 0.00 0.00 3.96
406 407 7.978414 TCAAACAATAAGACTGTGAAAATGCAA 59.022 29.630 0.00 0.00 0.00 4.08
407 408 8.602328 CAAACAATAAGACTGTGAAAATGCAAA 58.398 29.630 0.00 0.00 0.00 3.68
408 409 8.715191 AACAATAAGACTGTGAAAATGCAAAA 57.285 26.923 0.00 0.00 0.00 2.44
409 410 8.715191 ACAATAAGACTGTGAAAATGCAAAAA 57.285 26.923 0.00 0.00 0.00 1.94
543 745 2.742348 TGGATTTGCCATGCTCTTCAT 58.258 42.857 0.00 0.00 43.33 2.57
554 756 4.639310 CCATGCTCTTCATCTAAACTTGCT 59.361 41.667 0.00 0.00 31.79 3.91
613 816 3.891422 TTGCCATGCCTAAAAATCTGG 57.109 42.857 0.00 0.00 0.00 3.86
884 1906 3.445149 CGACGATCATCGCGCGAG 61.445 66.667 36.99 26.95 45.12 5.03
975 2001 3.675563 GCTCGGGCGATCGATCCT 61.676 66.667 21.57 0.00 38.55 3.24
1444 2470 2.203728 TGTACCCGGTGCTGGAGT 60.204 61.111 7.22 0.00 0.00 3.85
1449 2475 3.374402 CCGGTGCTGGAGTCGTCT 61.374 66.667 0.00 0.00 0.00 4.18
1617 2643 1.614241 GGGTGACGCTGTACCAGGAT 61.614 60.000 0.00 0.00 38.74 3.24
1914 2940 3.980022 TCCTTGGCATCCAGATGGTAATA 59.020 43.478 9.58 0.00 39.16 0.98
1926 2952 7.861629 TCCAGATGGTAATAACTGAATTCAGT 58.138 34.615 31.06 31.06 46.62 3.41
2035 3071 7.293018 GTTGGCTTTGATGAATTTGAATGAAC 58.707 34.615 0.00 0.00 0.00 3.18
2076 3112 9.013229 TCCATATGTAAATTATGACTTCATGCC 57.987 33.333 1.24 0.00 37.15 4.40
2077 3113 8.795513 CCATATGTAAATTATGACTTCATGCCA 58.204 33.333 1.24 0.00 37.15 4.92
2213 3249 1.754226 TGGGTGAAGCAAAAGGTTGTC 59.246 47.619 0.00 0.00 37.06 3.18
2282 3318 1.001268 GCAATGAGCTGATGATGGCAG 60.001 52.381 0.00 0.00 41.15 4.85
2283 3319 1.609072 CAATGAGCTGATGATGGCAGG 59.391 52.381 0.00 0.00 34.00 4.85
2416 3452 5.279708 CCTTGATCTATGTGGTGGGAGATAC 60.280 48.000 0.00 0.00 0.00 2.24
2455 3491 3.186909 TCTGTTTCACACTCTTCACACG 58.813 45.455 0.00 0.00 0.00 4.49
2510 3546 3.004419 CGCGGTGAGAACTCCTGAATATA 59.996 47.826 0.00 0.00 0.00 0.86
2511 3547 4.551388 GCGGTGAGAACTCCTGAATATAG 58.449 47.826 0.00 0.00 0.00 1.31
2520 3556 8.602472 AGAACTCCTGAATATAGTCTGAACTT 57.398 34.615 8.45 0.00 36.92 2.66
2542 3578 9.971922 AACTTTGTTAGAGATTTTCATTCAAGG 57.028 29.630 0.00 0.00 0.00 3.61
2647 3683 4.621068 TGATTTGCATTCCAAGATCGAC 57.379 40.909 0.00 0.00 34.34 4.20
2853 3889 5.119694 GGATGTTCAGGTAAGATCTTCCAC 58.880 45.833 12.24 5.48 37.85 4.02
3028 4064 4.002906 TCACCTGACCATAACTGTGTTC 57.997 45.455 0.00 0.00 0.00 3.18
3029 4065 3.389656 TCACCTGACCATAACTGTGTTCA 59.610 43.478 0.00 0.00 0.00 3.18
3030 4066 3.748048 CACCTGACCATAACTGTGTTCAG 59.252 47.826 0.00 0.00 46.18 3.02
3031 4067 3.646162 ACCTGACCATAACTGTGTTCAGA 59.354 43.478 3.13 0.00 43.76 3.27
3140 4176 3.184541 CATACACACAGCCTACGTTACC 58.815 50.000 0.00 0.00 0.00 2.85
3257 4293 5.989777 GCAAGGACTAGTACAGTTTCTTTCA 59.010 40.000 8.10 0.00 37.72 2.69
3258 4294 6.482308 GCAAGGACTAGTACAGTTTCTTTCAA 59.518 38.462 8.10 0.00 37.72 2.69
3259 4295 7.173390 GCAAGGACTAGTACAGTTTCTTTCAAT 59.827 37.037 8.10 0.00 37.72 2.57
3260 4296 8.713271 CAAGGACTAGTACAGTTTCTTTCAATC 58.287 37.037 8.10 0.00 37.72 2.67
3261 4297 8.196378 AGGACTAGTACAGTTTCTTTCAATCT 57.804 34.615 8.10 0.00 37.72 2.40
3262 4298 8.652290 AGGACTAGTACAGTTTCTTTCAATCTT 58.348 33.333 8.10 0.00 37.72 2.40
3409 4467 5.823209 ACAAATATGCCCGGTACTTAAAC 57.177 39.130 0.00 0.00 0.00 2.01
3436 4494 0.035056 AGCCCCGGACTCTGAAATTG 60.035 55.000 0.73 0.00 0.00 2.32
3465 4523 4.300189 TGCAGGCGCGAATAATTTAATT 57.700 36.364 12.10 0.00 42.97 1.40
3493 4551 2.424956 GAGGTAGCCCTGAAAATTGCTG 59.575 50.000 0.00 0.00 42.86 4.41
3525 4583 1.346365 CGAACGAGAGATTTTCGGCA 58.654 50.000 0.00 0.00 42.12 5.69
3635 4697 6.716284 TCTCTCTCAGTGACTCAGATCTTTA 58.284 40.000 0.00 0.00 0.00 1.85
3644 4706 7.914871 CAGTGACTCAGATCTTTATCACTACAG 59.085 40.741 22.86 13.01 43.69 2.74
3650 4712 8.122472 TCAGATCTTTATCACTACAGTGTCAA 57.878 34.615 0.00 2.56 45.76 3.18
3665 4727 4.512944 CAGTGTCAACTAAAGCACATCAGT 59.487 41.667 0.00 0.00 33.79 3.41
3777 4857 6.650427 TGTACGAGATAATCTACAAGGCAT 57.350 37.500 0.00 0.00 0.00 4.40
3792 4872 1.004745 AGGCATTGAAAGACACGGGAT 59.995 47.619 0.00 0.00 0.00 3.85
3938 5021 1.375908 CAAGGACTGCAAGCGGCTA 60.376 57.895 1.35 0.00 45.15 3.93
3970 5053 2.096069 GCAATGCGAGCACCACTATATG 60.096 50.000 0.00 0.00 0.00 1.78
3982 5065 4.037927 ACCACTATATGTAGGTGCCACTT 58.962 43.478 1.26 0.00 31.90 3.16
3983 5066 4.473559 ACCACTATATGTAGGTGCCACTTT 59.526 41.667 1.26 0.00 31.90 2.66
4015 5098 3.407424 TTATGCAGCAGAACTCACACT 57.593 42.857 0.00 0.00 0.00 3.55
4271 5366 1.780503 CCAAATCCATTCCCTCACCC 58.219 55.000 0.00 0.00 0.00 4.61
4272 5367 1.689258 CCAAATCCATTCCCTCACCCC 60.689 57.143 0.00 0.00 0.00 4.95
4273 5368 1.006998 CAAATCCATTCCCTCACCCCA 59.993 52.381 0.00 0.00 0.00 4.96
4313 5408 0.716108 CGACTGACGAACTGGAATGC 59.284 55.000 0.00 0.00 45.77 3.56
4525 5620 0.953471 TCGAATGGAACGGCAAGGTG 60.953 55.000 0.00 0.00 0.00 4.00
4631 5727 8.664992 TCACCATATGATCTCTTCTCTAGTAGT 58.335 37.037 3.65 0.00 29.99 2.73
4636 5732 4.884744 TGATCTCTTCTCTAGTAGTGCACC 59.115 45.833 14.63 0.00 0.00 5.01
4743 5839 5.063564 CAGTTTTATGCTCTTTCTCCGGTAC 59.936 44.000 0.00 0.00 0.00 3.34
4782 5883 6.164876 TGCATGGGTTTCACAATATTTTCAG 58.835 36.000 0.00 0.00 0.00 3.02
4844 5950 9.085250 GGGAAAAAGAATGTTTTTAACACGTTA 57.915 29.630 0.70 0.00 45.50 3.18
4886 5992 3.980775 CGCGATTTCAAACAAAGTTCCAT 59.019 39.130 0.00 0.00 0.00 3.41
4924 6035 3.243602 GCCGCGTTTTCCCCATAATATTT 60.244 43.478 4.92 0.00 0.00 1.40
5069 6188 2.120232 CATGTATCGAAGAGCACGTCC 58.880 52.381 0.00 0.00 43.63 4.79
5099 6218 4.222145 AGAGGATGGCGAAAACAGTTACTA 59.778 41.667 0.00 0.00 0.00 1.82
5110 6229 6.074195 CGAAAACAGTTACTAAATCGGACACA 60.074 38.462 0.00 0.00 0.00 3.72
5117 6236 3.314553 ACTAAATCGGACACACACTTCG 58.685 45.455 0.00 0.00 0.00 3.79
5321 6445 7.978414 CCACAAATTTAACCACATATGTGCATA 59.022 33.333 27.27 18.97 44.34 3.14
5363 6487 4.499183 CTTCCTCGAAAGTGAAGCATAGT 58.501 43.478 0.00 0.00 35.52 2.12
5389 6513 1.195442 TCACCCCGTGGAAGCACATA 61.195 55.000 0.00 0.00 33.87 2.29
5591 6715 2.414559 GGTTCGTGATTTGGATGCACAG 60.415 50.000 0.00 0.00 32.96 3.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.553334 ACTAGATAGCTAGATAGAACGGAGAG 58.447 42.308 21.51 0.00 45.71 3.20
1 2 7.484993 ACTAGATAGCTAGATAGAACGGAGA 57.515 40.000 21.51 0.00 45.71 3.71
2 3 8.556213 AAACTAGATAGCTAGATAGAACGGAG 57.444 38.462 21.51 0.00 45.71 4.63
3 4 8.921353 AAAACTAGATAGCTAGATAGAACGGA 57.079 34.615 21.51 0.00 45.71 4.69
32 33 9.483916 CACCCGACACATAAATTAGATACATTA 57.516 33.333 0.00 0.00 0.00 1.90
33 34 8.208224 TCACCCGACACATAAATTAGATACATT 58.792 33.333 0.00 0.00 0.00 2.71
34 35 7.732025 TCACCCGACACATAAATTAGATACAT 58.268 34.615 0.00 0.00 0.00 2.29
35 36 7.114866 TCACCCGACACATAAATTAGATACA 57.885 36.000 0.00 0.00 0.00 2.29
36 37 7.870954 TCATCACCCGACACATAAATTAGATAC 59.129 37.037 0.00 0.00 0.00 2.24
37 38 7.958088 TCATCACCCGACACATAAATTAGATA 58.042 34.615 0.00 0.00 0.00 1.98
38 39 6.826668 TCATCACCCGACACATAAATTAGAT 58.173 36.000 0.00 0.00 0.00 1.98
39 40 6.228616 TCATCACCCGACACATAAATTAGA 57.771 37.500 0.00 0.00 0.00 2.10
40 41 6.538742 AGTTCATCACCCGACACATAAATTAG 59.461 38.462 0.00 0.00 0.00 1.73
41 42 6.411376 AGTTCATCACCCGACACATAAATTA 58.589 36.000 0.00 0.00 0.00 1.40
42 43 5.253330 AGTTCATCACCCGACACATAAATT 58.747 37.500 0.00 0.00 0.00 1.82
43 44 4.843728 AGTTCATCACCCGACACATAAAT 58.156 39.130 0.00 0.00 0.00 1.40
44 45 4.280436 AGTTCATCACCCGACACATAAA 57.720 40.909 0.00 0.00 0.00 1.40
45 46 3.973206 AGTTCATCACCCGACACATAA 57.027 42.857 0.00 0.00 0.00 1.90
46 47 3.595173 CAAGTTCATCACCCGACACATA 58.405 45.455 0.00 0.00 0.00 2.29
47 48 2.426522 CAAGTTCATCACCCGACACAT 58.573 47.619 0.00 0.00 0.00 3.21
48 49 1.877637 CAAGTTCATCACCCGACACA 58.122 50.000 0.00 0.00 0.00 3.72
49 50 0.517316 GCAAGTTCATCACCCGACAC 59.483 55.000 0.00 0.00 0.00 3.67
50 51 0.396435 AGCAAGTTCATCACCCGACA 59.604 50.000 0.00 0.00 0.00 4.35
51 52 1.079503 GAGCAAGTTCATCACCCGAC 58.920 55.000 0.00 0.00 0.00 4.79
52 53 0.976641 AGAGCAAGTTCATCACCCGA 59.023 50.000 0.00 0.00 0.00 5.14
53 54 1.813513 AAGAGCAAGTTCATCACCCG 58.186 50.000 0.00 0.00 0.00 5.28
54 55 3.305608 CCAAAAGAGCAAGTTCATCACCC 60.306 47.826 0.00 0.00 0.00 4.61
55 56 3.305608 CCCAAAAGAGCAAGTTCATCACC 60.306 47.826 0.00 0.00 0.00 4.02
56 57 3.858503 GCCCAAAAGAGCAAGTTCATCAC 60.859 47.826 0.00 0.00 0.00 3.06
57 58 2.297033 GCCCAAAAGAGCAAGTTCATCA 59.703 45.455 0.00 0.00 0.00 3.07
58 59 2.353109 GGCCCAAAAGAGCAAGTTCATC 60.353 50.000 0.00 0.00 0.00 2.92
59 60 1.620323 GGCCCAAAAGAGCAAGTTCAT 59.380 47.619 0.00 0.00 0.00 2.57
60 61 1.039856 GGCCCAAAAGAGCAAGTTCA 58.960 50.000 0.00 0.00 0.00 3.18
61 62 0.318441 GGGCCCAAAAGAGCAAGTTC 59.682 55.000 19.95 0.00 0.00 3.01
62 63 1.463553 CGGGCCCAAAAGAGCAAGTT 61.464 55.000 24.92 0.00 0.00 2.66
63 64 1.903404 CGGGCCCAAAAGAGCAAGT 60.903 57.895 24.92 0.00 0.00 3.16
64 65 0.967380 ATCGGGCCCAAAAGAGCAAG 60.967 55.000 24.92 0.23 0.00 4.01
65 66 0.541764 AATCGGGCCCAAAAGAGCAA 60.542 50.000 24.92 0.00 0.00 3.91
66 67 1.076549 AATCGGGCCCAAAAGAGCA 59.923 52.632 24.92 0.00 0.00 4.26
67 68 1.250840 ACAATCGGGCCCAAAAGAGC 61.251 55.000 24.92 0.00 0.00 4.09
68 69 1.743394 GTACAATCGGGCCCAAAAGAG 59.257 52.381 24.92 8.55 0.00 2.85
69 70 1.828979 GTACAATCGGGCCCAAAAGA 58.171 50.000 24.92 11.58 0.00 2.52
70 71 0.450184 CGTACAATCGGGCCCAAAAG 59.550 55.000 24.92 11.34 0.00 2.27
71 72 0.036448 TCGTACAATCGGGCCCAAAA 59.964 50.000 24.92 6.80 0.00 2.44
72 73 0.036448 TTCGTACAATCGGGCCCAAA 59.964 50.000 24.92 9.92 0.00 3.28
73 74 0.036448 TTTCGTACAATCGGGCCCAA 59.964 50.000 24.92 2.23 0.00 4.12
74 75 0.036448 TTTTCGTACAATCGGGCCCA 59.964 50.000 24.92 9.77 0.00 5.36
75 76 0.448990 GTTTTCGTACAATCGGGCCC 59.551 55.000 13.57 13.57 0.00 5.80
76 77 1.445871 AGTTTTCGTACAATCGGGCC 58.554 50.000 0.00 0.00 0.00 5.80
77 78 2.846693 CAAGTTTTCGTACAATCGGGC 58.153 47.619 0.00 0.00 0.00 6.13
78 79 2.482721 AGCAAGTTTTCGTACAATCGGG 59.517 45.455 0.00 0.00 0.00 5.14
79 80 3.432252 AGAGCAAGTTTTCGTACAATCGG 59.568 43.478 0.00 0.00 0.00 4.18
80 81 4.647291 AGAGCAAGTTTTCGTACAATCG 57.353 40.909 0.00 0.00 0.00 3.34
81 82 6.142320 CCAAAAGAGCAAGTTTTCGTACAATC 59.858 38.462 0.00 0.00 0.00 2.67
82 83 5.977129 CCAAAAGAGCAAGTTTTCGTACAAT 59.023 36.000 0.00 0.00 0.00 2.71
83 84 5.336744 CCAAAAGAGCAAGTTTTCGTACAA 58.663 37.500 0.00 0.00 0.00 2.41
84 85 4.201970 CCCAAAAGAGCAAGTTTTCGTACA 60.202 41.667 0.00 0.00 0.00 2.90
85 86 4.201980 ACCCAAAAGAGCAAGTTTTCGTAC 60.202 41.667 0.00 0.00 0.00 3.67
86 87 3.949113 ACCCAAAAGAGCAAGTTTTCGTA 59.051 39.130 0.00 0.00 0.00 3.43
87 88 2.758423 ACCCAAAAGAGCAAGTTTTCGT 59.242 40.909 0.00 0.00 0.00 3.85
88 89 3.372060 GACCCAAAAGAGCAAGTTTTCG 58.628 45.455 0.00 0.00 0.00 3.46
89 90 3.717707 GGACCCAAAAGAGCAAGTTTTC 58.282 45.455 0.00 0.00 0.00 2.29
90 91 2.100749 CGGACCCAAAAGAGCAAGTTTT 59.899 45.455 0.00 0.00 0.00 2.43
91 92 1.681264 CGGACCCAAAAGAGCAAGTTT 59.319 47.619 0.00 0.00 0.00 2.66
92 93 1.318576 CGGACCCAAAAGAGCAAGTT 58.681 50.000 0.00 0.00 0.00 2.66
93 94 0.537371 CCGGACCCAAAAGAGCAAGT 60.537 55.000 0.00 0.00 0.00 3.16
94 95 0.537371 ACCGGACCCAAAAGAGCAAG 60.537 55.000 9.46 0.00 0.00 4.01
95 96 0.106419 AACCGGACCCAAAAGAGCAA 60.106 50.000 9.46 0.00 0.00 3.91
96 97 0.106419 AAACCGGACCCAAAAGAGCA 60.106 50.000 9.46 0.00 0.00 4.26
97 98 1.900245 TAAACCGGACCCAAAAGAGC 58.100 50.000 9.46 0.00 0.00 4.09
98 99 2.163613 GCATAAACCGGACCCAAAAGAG 59.836 50.000 9.46 0.00 0.00 2.85
99 100 2.164338 GCATAAACCGGACCCAAAAGA 58.836 47.619 9.46 0.00 0.00 2.52
100 101 2.167662 AGCATAAACCGGACCCAAAAG 58.832 47.619 9.46 0.00 0.00 2.27
101 102 2.296073 AGCATAAACCGGACCCAAAA 57.704 45.000 9.46 0.00 0.00 2.44
102 103 3.655615 ATAGCATAAACCGGACCCAAA 57.344 42.857 9.46 0.00 0.00 3.28
103 104 4.986054 ATATAGCATAAACCGGACCCAA 57.014 40.909 9.46 0.00 0.00 4.12
104 105 5.486063 ACATATATAGCATAAACCGGACCCA 59.514 40.000 9.46 0.00 0.00 4.51
105 106 5.985911 ACATATATAGCATAAACCGGACCC 58.014 41.667 9.46 0.00 0.00 4.46
106 107 8.202137 ACATACATATATAGCATAAACCGGACC 58.798 37.037 9.46 0.00 0.00 4.46
107 108 9.595823 AACATACATATATAGCATAAACCGGAC 57.404 33.333 9.46 0.00 0.00 4.79
108 109 9.594478 CAACATACATATATAGCATAAACCGGA 57.406 33.333 9.46 0.00 0.00 5.14
109 110 9.594478 TCAACATACATATATAGCATAAACCGG 57.406 33.333 0.00 0.00 0.00 5.28
116 117 9.185680 TCGTAGGTCAACATACATATATAGCAT 57.814 33.333 5.88 0.00 33.15 3.79
117 118 8.570068 TCGTAGGTCAACATACATATATAGCA 57.430 34.615 5.88 0.00 33.15 3.49
118 119 8.675504 ACTCGTAGGTCAACATACATATATAGC 58.324 37.037 5.88 0.00 33.15 2.97
121 122 7.813148 GCAACTCGTAGGTCAACATACATATAT 59.187 37.037 5.88 0.00 33.15 0.86
122 123 7.143340 GCAACTCGTAGGTCAACATACATATA 58.857 38.462 5.88 0.00 33.15 0.86
123 124 5.983720 GCAACTCGTAGGTCAACATACATAT 59.016 40.000 5.88 0.00 33.15 1.78
124 125 5.105675 TGCAACTCGTAGGTCAACATACATA 60.106 40.000 5.88 0.00 33.15 2.29
125 126 4.181578 GCAACTCGTAGGTCAACATACAT 58.818 43.478 5.88 0.00 33.15 2.29
126 127 3.006003 TGCAACTCGTAGGTCAACATACA 59.994 43.478 5.88 0.00 33.15 2.29
127 128 3.581755 TGCAACTCGTAGGTCAACATAC 58.418 45.455 0.00 0.00 0.00 2.39
128 129 3.945981 TGCAACTCGTAGGTCAACATA 57.054 42.857 0.00 0.00 0.00 2.29
129 130 2.831685 TGCAACTCGTAGGTCAACAT 57.168 45.000 0.00 0.00 0.00 2.71
130 131 2.412870 CATGCAACTCGTAGGTCAACA 58.587 47.619 0.00 0.00 0.00 3.33
131 132 1.732259 CCATGCAACTCGTAGGTCAAC 59.268 52.381 0.00 0.00 0.00 3.18
132 133 1.621317 TCCATGCAACTCGTAGGTCAA 59.379 47.619 0.00 0.00 0.00 3.18
133 134 1.262417 TCCATGCAACTCGTAGGTCA 58.738 50.000 0.00 0.00 0.00 4.02
134 135 2.474816 GATCCATGCAACTCGTAGGTC 58.525 52.381 0.00 0.00 0.00 3.85
135 136 1.202417 CGATCCATGCAACTCGTAGGT 60.202 52.381 0.00 0.00 0.00 3.08
136 137 1.202417 ACGATCCATGCAACTCGTAGG 60.202 52.381 12.55 0.00 42.07 3.18
137 138 2.209838 ACGATCCATGCAACTCGTAG 57.790 50.000 12.55 0.00 42.07 3.51
138 139 3.552068 CCATACGATCCATGCAACTCGTA 60.552 47.826 18.97 18.97 46.71 3.43
139 140 2.473816 CATACGATCCATGCAACTCGT 58.526 47.619 16.64 16.64 45.40 4.18
140 141 1.794701 CCATACGATCCATGCAACTCG 59.205 52.381 0.00 0.00 37.17 4.18
141 142 3.111853 TCCATACGATCCATGCAACTC 57.888 47.619 0.00 0.00 0.00 3.01
142 143 3.777106 ATCCATACGATCCATGCAACT 57.223 42.857 0.00 0.00 0.00 3.16
143 144 3.058016 CCAATCCATACGATCCATGCAAC 60.058 47.826 0.00 0.00 0.00 4.17
144 145 3.148412 CCAATCCATACGATCCATGCAA 58.852 45.455 0.00 0.00 0.00 4.08
145 146 2.552809 CCCAATCCATACGATCCATGCA 60.553 50.000 0.00 0.00 0.00 3.96
146 147 2.086869 CCCAATCCATACGATCCATGC 58.913 52.381 0.00 0.00 0.00 4.06
147 148 2.618816 CCCCCAATCCATACGATCCATG 60.619 54.545 0.00 0.00 0.00 3.66
148 149 1.635487 CCCCCAATCCATACGATCCAT 59.365 52.381 0.00 0.00 0.00 3.41
149 150 1.064003 CCCCCAATCCATACGATCCA 58.936 55.000 0.00 0.00 0.00 3.41
150 151 0.322546 GCCCCCAATCCATACGATCC 60.323 60.000 0.00 0.00 0.00 3.36
151 152 0.322546 GGCCCCCAATCCATACGATC 60.323 60.000 0.00 0.00 0.00 3.69
152 153 0.772124 AGGCCCCCAATCCATACGAT 60.772 55.000 0.00 0.00 0.00 3.73
153 154 1.385347 AGGCCCCCAATCCATACGA 60.385 57.895 0.00 0.00 0.00 3.43
154 155 1.228245 CAGGCCCCCAATCCATACG 60.228 63.158 0.00 0.00 0.00 3.06
155 156 0.779997 ATCAGGCCCCCAATCCATAC 59.220 55.000 0.00 0.00 0.00 2.39
156 157 2.449360 TATCAGGCCCCCAATCCATA 57.551 50.000 0.00 0.00 0.00 2.74
157 158 1.777517 ATATCAGGCCCCCAATCCAT 58.222 50.000 0.00 0.00 0.00 3.41
158 159 1.544764 AATATCAGGCCCCCAATCCA 58.455 50.000 0.00 0.00 0.00 3.41
159 160 2.158325 TCAAATATCAGGCCCCCAATCC 60.158 50.000 0.00 0.00 0.00 3.01
160 161 3.160269 CTCAAATATCAGGCCCCCAATC 58.840 50.000 0.00 0.00 0.00 2.67
161 162 2.158264 CCTCAAATATCAGGCCCCCAAT 60.158 50.000 0.00 0.00 0.00 3.16
162 163 1.217689 CCTCAAATATCAGGCCCCCAA 59.782 52.381 0.00 0.00 0.00 4.12
163 164 0.852842 CCTCAAATATCAGGCCCCCA 59.147 55.000 0.00 0.00 0.00 4.96
164 165 1.149101 TCCTCAAATATCAGGCCCCC 58.851 55.000 0.00 0.00 0.00 5.40
165 166 1.202940 GGTCCTCAAATATCAGGCCCC 60.203 57.143 0.00 0.00 0.00 5.80
166 167 1.494721 TGGTCCTCAAATATCAGGCCC 59.505 52.381 0.00 0.00 0.00 5.80
167 168 3.152341 CATGGTCCTCAAATATCAGGCC 58.848 50.000 0.00 0.00 0.00 5.19
168 169 4.090761 TCATGGTCCTCAAATATCAGGC 57.909 45.455 0.00 0.00 0.00 4.85
169 170 5.048224 GCAATCATGGTCCTCAAATATCAGG 60.048 44.000 0.00 0.00 0.00 3.86
170 171 5.334646 CGCAATCATGGTCCTCAAATATCAG 60.335 44.000 0.00 0.00 0.00 2.90
171 172 4.516321 CGCAATCATGGTCCTCAAATATCA 59.484 41.667 0.00 0.00 0.00 2.15
172 173 4.083110 CCGCAATCATGGTCCTCAAATATC 60.083 45.833 0.00 0.00 0.00 1.63
173 174 3.822735 CCGCAATCATGGTCCTCAAATAT 59.177 43.478 0.00 0.00 0.00 1.28
174 175 3.118075 TCCGCAATCATGGTCCTCAAATA 60.118 43.478 0.00 0.00 0.00 1.40
175 176 2.026641 CCGCAATCATGGTCCTCAAAT 58.973 47.619 0.00 0.00 0.00 2.32
176 177 1.004161 TCCGCAATCATGGTCCTCAAA 59.996 47.619 0.00 0.00 0.00 2.69
177 178 0.617935 TCCGCAATCATGGTCCTCAA 59.382 50.000 0.00 0.00 0.00 3.02
178 179 0.107703 GTCCGCAATCATGGTCCTCA 60.108 55.000 0.00 0.00 0.00 3.86
179 180 0.107703 TGTCCGCAATCATGGTCCTC 60.108 55.000 0.00 0.00 0.00 3.71
180 181 0.327924 TTGTCCGCAATCATGGTCCT 59.672 50.000 0.00 0.00 0.00 3.85
181 182 0.734889 CTTGTCCGCAATCATGGTCC 59.265 55.000 0.00 0.00 33.65 4.46
182 183 1.737838 TCTTGTCCGCAATCATGGTC 58.262 50.000 0.00 0.00 33.65 4.02
183 184 1.812571 GTTCTTGTCCGCAATCATGGT 59.187 47.619 0.00 0.00 33.65 3.55
184 185 1.811965 TGTTCTTGTCCGCAATCATGG 59.188 47.619 0.00 0.00 33.65 3.66
185 186 3.557577 TTGTTCTTGTCCGCAATCATG 57.442 42.857 0.00 0.00 33.65 3.07
186 187 4.789012 ATTTGTTCTTGTCCGCAATCAT 57.211 36.364 0.00 0.00 33.65 2.45
187 188 4.155826 CCTATTTGTTCTTGTCCGCAATCA 59.844 41.667 0.00 0.00 33.65 2.57
188 189 4.438744 CCCTATTTGTTCTTGTCCGCAATC 60.439 45.833 0.00 0.00 33.65 2.67
189 190 3.443681 CCCTATTTGTTCTTGTCCGCAAT 59.556 43.478 0.00 0.00 33.65 3.56
190 191 2.817258 CCCTATTTGTTCTTGTCCGCAA 59.183 45.455 0.00 0.00 0.00 4.85
191 192 2.432444 CCCTATTTGTTCTTGTCCGCA 58.568 47.619 0.00 0.00 0.00 5.69
192 193 1.743394 CCCCTATTTGTTCTTGTCCGC 59.257 52.381 0.00 0.00 0.00 5.54
193 194 2.290705 ACCCCCTATTTGTTCTTGTCCG 60.291 50.000 0.00 0.00 0.00 4.79
194 195 3.089284 CACCCCCTATTTGTTCTTGTCC 58.911 50.000 0.00 0.00 0.00 4.02
195 196 4.028993 TCACCCCCTATTTGTTCTTGTC 57.971 45.455 0.00 0.00 0.00 3.18
196 197 4.044065 TGATCACCCCCTATTTGTTCTTGT 59.956 41.667 0.00 0.00 0.00 3.16
197 198 4.599041 TGATCACCCCCTATTTGTTCTTG 58.401 43.478 0.00 0.00 0.00 3.02
198 199 4.292306 ACTGATCACCCCCTATTTGTTCTT 59.708 41.667 0.00 0.00 0.00 2.52
199 200 3.852578 ACTGATCACCCCCTATTTGTTCT 59.147 43.478 0.00 0.00 0.00 3.01
200 201 4.200092 GACTGATCACCCCCTATTTGTTC 58.800 47.826 0.00 0.00 0.00 3.18
201 202 3.591527 TGACTGATCACCCCCTATTTGTT 59.408 43.478 0.00 0.00 0.00 2.83
202 203 3.189606 TGACTGATCACCCCCTATTTGT 58.810 45.455 0.00 0.00 0.00 2.83
203 204 3.931907 TGACTGATCACCCCCTATTTG 57.068 47.619 0.00 0.00 0.00 2.32
214 215 2.597455 TCTGTGGACAGTGACTGATCA 58.403 47.619 20.97 13.39 44.12 2.92
215 216 3.883830 ATCTGTGGACAGTGACTGATC 57.116 47.619 20.97 12.46 44.12 2.92
216 217 7.395772 CCTATATATCTGTGGACAGTGACTGAT 59.604 40.741 20.97 3.31 44.12 2.90
217 218 6.717084 CCTATATATCTGTGGACAGTGACTGA 59.283 42.308 20.97 0.00 44.12 3.41
218 219 6.071672 CCCTATATATCTGTGGACAGTGACTG 60.072 46.154 11.70 11.70 44.12 3.51
219 220 6.013379 CCCTATATATCTGTGGACAGTGACT 58.987 44.000 6.68 0.00 44.12 3.41
220 221 5.775701 ACCCTATATATCTGTGGACAGTGAC 59.224 44.000 6.68 0.00 44.12 3.67
221 222 5.775195 CACCCTATATATCTGTGGACAGTGA 59.225 44.000 6.68 0.00 44.12 3.41
222 223 6.030548 CACCCTATATATCTGTGGACAGTG 57.969 45.833 6.68 0.00 44.12 3.66
228 229 4.425772 TGGTCCACCCTATATATCTGTGG 58.574 47.826 16.56 16.56 46.19 4.17
229 230 5.104776 CCATGGTCCACCCTATATATCTGTG 60.105 48.000 2.57 0.00 34.29 3.66
230 231 5.032846 CCATGGTCCACCCTATATATCTGT 58.967 45.833 2.57 0.00 34.29 3.41
231 232 5.032846 ACCATGGTCCACCCTATATATCTG 58.967 45.833 13.00 0.00 34.29 2.90
232 233 5.305675 ACCATGGTCCACCCTATATATCT 57.694 43.478 13.00 0.00 34.29 1.98
233 234 5.250774 ACAACCATGGTCCACCCTATATATC 59.749 44.000 20.07 0.00 34.29 1.63
234 235 5.170198 ACAACCATGGTCCACCCTATATAT 58.830 41.667 20.07 0.00 34.29 0.86
235 236 4.572978 ACAACCATGGTCCACCCTATATA 58.427 43.478 20.07 0.00 34.29 0.86
236 237 3.403322 ACAACCATGGTCCACCCTATAT 58.597 45.455 20.07 0.00 34.29 0.86
237 238 2.853430 ACAACCATGGTCCACCCTATA 58.147 47.619 20.07 0.00 34.29 1.31
238 239 1.681229 ACAACCATGGTCCACCCTAT 58.319 50.000 20.07 0.00 34.29 2.57
239 240 2.193127 CTACAACCATGGTCCACCCTA 58.807 52.381 20.07 0.81 34.29 3.53
240 241 0.991920 CTACAACCATGGTCCACCCT 59.008 55.000 20.07 0.00 34.29 4.34
241 242 0.034477 CCTACAACCATGGTCCACCC 60.034 60.000 20.07 0.00 34.29 4.61
242 243 0.679960 GCCTACAACCATGGTCCACC 60.680 60.000 20.07 1.08 0.00 4.61
243 244 1.024579 CGCCTACAACCATGGTCCAC 61.025 60.000 20.07 4.10 0.00 4.02
244 245 1.298340 CGCCTACAACCATGGTCCA 59.702 57.895 20.07 5.32 0.00 4.02
245 246 2.112815 GCGCCTACAACCATGGTCC 61.113 63.158 20.07 1.91 0.00 4.46
246 247 0.676782 AAGCGCCTACAACCATGGTC 60.677 55.000 20.07 3.06 0.00 4.02
247 248 0.251165 AAAGCGCCTACAACCATGGT 60.251 50.000 13.00 13.00 0.00 3.55
248 249 0.887933 AAAAGCGCCTACAACCATGG 59.112 50.000 11.19 11.19 0.00 3.66
249 250 2.477863 GCTAAAAGCGCCTACAACCATG 60.478 50.000 2.29 0.00 0.00 3.66
250 251 1.743394 GCTAAAAGCGCCTACAACCAT 59.257 47.619 2.29 0.00 0.00 3.55
251 252 1.161843 GCTAAAAGCGCCTACAACCA 58.838 50.000 2.29 0.00 0.00 3.67
252 253 3.990546 GCTAAAAGCGCCTACAACC 57.009 52.632 2.29 0.00 0.00 3.77
331 332 5.843673 TGGCTCAAAACAATTGTCACTTA 57.156 34.783 12.39 0.00 0.00 2.24
335 336 3.129462 TCGTTGGCTCAAAACAATTGTCA 59.871 39.130 12.39 0.34 0.00 3.58
439 440 4.864704 AATTGCCATAAAAACGTCAGGT 57.135 36.364 0.00 0.00 0.00 4.00
440 441 9.528018 AATATAAATTGCCATAAAAACGTCAGG 57.472 29.630 0.00 0.00 0.00 3.86
478 480 2.723124 AATTGCTGGGCTTGTAAACG 57.277 45.000 0.00 0.00 0.00 3.60
483 676 2.825861 CAGAAAATTGCTGGGCTTGT 57.174 45.000 0.00 0.00 0.00 3.16
539 741 6.127451 TGTCGAGGATAGCAAGTTTAGATGAA 60.127 38.462 0.00 0.00 0.00 2.57
543 745 5.654603 TTGTCGAGGATAGCAAGTTTAGA 57.345 39.130 0.00 0.00 0.00 2.10
554 756 5.883115 TGGCAAATTATGTTTGTCGAGGATA 59.117 36.000 0.00 0.00 36.86 2.59
613 816 0.798776 CCCGAATATCCAGCGAATGC 59.201 55.000 0.00 0.00 43.24 3.56
615 818 1.002087 GGACCCGAATATCCAGCGAAT 59.998 52.381 0.00 0.00 34.87 3.34
736 990 1.467920 CTGAAATGCAGGGGAGGTTC 58.532 55.000 0.00 0.00 41.07 3.62
881 1903 3.470567 GTGGTCTCGCGTTGCTCG 61.471 66.667 5.77 0.00 43.12 5.03
882 1904 3.112709 GGTGGTCTCGCGTTGCTC 61.113 66.667 5.77 0.00 0.00 4.26
884 1906 2.240612 GATTGGTGGTCTCGCGTTGC 62.241 60.000 5.77 0.00 0.00 4.17
926 1952 1.330829 TCGATCTGTGTCTCGATTCCG 59.669 52.381 0.00 0.00 38.86 4.30
960 1986 3.978491 GCAGGATCGATCGCCCGA 61.978 66.667 18.81 0.00 43.16 5.14
1186 2212 2.741092 GTCGCTGGTGGACTTGGA 59.259 61.111 0.00 0.00 0.00 3.53
1566 2592 1.188863 GGAGCGGGAAGTAGGTGTTA 58.811 55.000 0.00 0.00 0.00 2.41
1926 2952 6.155136 TGCAGCATTTTGATTAAATCGACAA 58.845 32.000 0.00 0.00 34.19 3.18
1983 3015 7.523293 TGAAACTTGGAGCAGAATTAATTCA 57.477 32.000 26.02 6.02 39.23 2.57
1989 3021 4.074970 ACGATGAAACTTGGAGCAGAATT 58.925 39.130 0.00 0.00 0.00 2.17
1990 3022 3.679389 ACGATGAAACTTGGAGCAGAAT 58.321 40.909 0.00 0.00 0.00 2.40
1991 3023 3.126001 ACGATGAAACTTGGAGCAGAA 57.874 42.857 0.00 0.00 0.00 3.02
1992 3024 2.807967 CAACGATGAAACTTGGAGCAGA 59.192 45.455 0.00 0.00 0.00 4.26
1993 3025 2.095567 CCAACGATGAAACTTGGAGCAG 60.096 50.000 0.00 0.00 37.25 4.24
1994 3026 1.879380 CCAACGATGAAACTTGGAGCA 59.121 47.619 0.00 0.00 37.25 4.26
1995 3027 1.401539 GCCAACGATGAAACTTGGAGC 60.402 52.381 3.11 0.00 37.25 4.70
1996 3028 2.154462 AGCCAACGATGAAACTTGGAG 58.846 47.619 3.11 0.00 37.25 3.86
1997 3029 2.270352 AGCCAACGATGAAACTTGGA 57.730 45.000 3.11 0.00 37.25 3.53
1998 3030 3.052036 CAAAGCCAACGATGAAACTTGG 58.948 45.455 0.00 0.00 38.00 3.61
2002 3034 4.159377 TCATCAAAGCCAACGATGAAAC 57.841 40.909 0.00 0.00 41.85 2.78
2069 3105 4.283212 TCCTACATATGACGATGGCATGAA 59.717 41.667 10.38 0.00 0.00 2.57
2071 3107 4.192429 TCCTACATATGACGATGGCATG 57.808 45.455 10.38 0.00 0.00 4.06
2073 3109 3.006859 CCTTCCTACATATGACGATGGCA 59.993 47.826 10.38 0.00 0.00 4.92
2074 3110 3.006967 ACCTTCCTACATATGACGATGGC 59.993 47.826 10.38 0.00 0.00 4.40
2075 3111 4.873746 ACCTTCCTACATATGACGATGG 57.126 45.455 10.38 13.73 0.00 3.51
2076 3112 6.745116 TGTAACCTTCCTACATATGACGATG 58.255 40.000 10.38 4.00 0.00 3.84
2077 3113 6.971726 TGTAACCTTCCTACATATGACGAT 57.028 37.500 10.38 0.00 0.00 3.73
2079 3115 5.926542 CCATGTAACCTTCCTACATATGACG 59.073 44.000 10.38 0.00 37.79 4.35
2213 3249 8.462016 AGTTTATTTCCTCGGATGAAATGAAAG 58.538 33.333 23.20 0.00 41.30 2.62
2282 3318 1.177401 GTCTCCTGGTTTCCAATGCC 58.823 55.000 0.00 0.00 30.80 4.40
2283 3319 1.815003 CTGTCTCCTGGTTTCCAATGC 59.185 52.381 0.00 0.00 30.80 3.56
2416 3452 0.798776 GATTGTGCCTTGGAGTGTCG 59.201 55.000 0.00 0.00 0.00 4.35
2455 3491 4.523083 TGTAATAATCCTCCTTGTGCACC 58.477 43.478 15.69 0.00 0.00 5.01
2510 3546 8.964476 TGAAAATCTCTAACAAAGTTCAGACT 57.036 30.769 0.00 0.00 37.87 3.24
2520 3556 9.519191 TGATCCTTGAATGAAAATCTCTAACAA 57.481 29.630 0.00 0.00 0.00 2.83
2525 3561 9.476928 AGAATTGATCCTTGAATGAAAATCTCT 57.523 29.630 0.00 0.00 0.00 3.10
2553 3589 3.549827 CGGCGCATTTTGGCTATCAAATA 60.550 43.478 10.83 0.00 43.95 1.40
2565 3601 1.210155 GAGACAAGCGGCGCATTTT 59.790 52.632 35.02 17.29 0.00 1.82
2566 3602 2.870372 GAGACAAGCGGCGCATTT 59.130 55.556 35.02 16.38 0.00 2.32
2605 3641 2.202932 CATGGTTCTCTCGGCCCG 60.203 66.667 0.00 0.00 0.00 6.13
2898 3934 0.801251 GCACTCCAACATGAGACTGC 59.199 55.000 0.00 0.81 36.22 4.40
3028 4064 4.843220 AAAACAAATGGAGCTCTGTCTG 57.157 40.909 14.64 9.02 0.00 3.51
3029 4065 4.762251 GGTAAAACAAATGGAGCTCTGTCT 59.238 41.667 14.64 4.01 0.00 3.41
3030 4066 4.762251 AGGTAAAACAAATGGAGCTCTGTC 59.238 41.667 14.64 0.00 0.00 3.51
3031 4067 4.520492 CAGGTAAAACAAATGGAGCTCTGT 59.480 41.667 14.64 7.12 0.00 3.41
3257 4293 5.068198 CACAACCTAGCATGCCATTAAGATT 59.932 40.000 15.66 0.00 0.00 2.40
3258 4294 4.581824 CACAACCTAGCATGCCATTAAGAT 59.418 41.667 15.66 0.00 0.00 2.40
3259 4295 3.947196 CACAACCTAGCATGCCATTAAGA 59.053 43.478 15.66 0.00 0.00 2.10
3260 4296 3.696051 ACACAACCTAGCATGCCATTAAG 59.304 43.478 15.66 3.54 0.00 1.85
3261 4297 3.696045 ACACAACCTAGCATGCCATTAA 58.304 40.909 15.66 0.00 0.00 1.40
3262 4298 3.364460 ACACAACCTAGCATGCCATTA 57.636 42.857 15.66 0.00 0.00 1.90
3409 4467 4.785453 GTCCGGGGCTGCCAGAAG 62.785 72.222 22.05 7.92 0.00 2.85
3436 4494 2.400896 TTCGCGCCTGCAAGAAAACC 62.401 55.000 0.00 0.00 42.97 3.27
3465 4523 1.528542 CAGGGCTACCTCGATCGGA 60.529 63.158 16.41 1.00 46.95 4.55
3493 4551 2.102633 CTCGTTCGCGTAGATCTTGTC 58.897 52.381 5.77 0.00 42.11 3.18
3525 4583 6.599244 CAGGCCACATCGGAATTATTATGTAT 59.401 38.462 5.01 0.00 36.56 2.29
3644 4706 5.424121 AACTGATGTGCTTTAGTTGACAC 57.576 39.130 0.00 0.00 32.56 3.67
3650 4712 7.173390 GGTTCTTAGAAACTGATGTGCTTTAGT 59.827 37.037 2.28 0.00 0.00 2.24
3688 4765 3.191078 AGCCTAACAGAAGCAGCTATG 57.809 47.619 0.00 0.00 0.00 2.23
3777 4857 3.505680 CCATTCAATCCCGTGTCTTTCAA 59.494 43.478 0.00 0.00 0.00 2.69
3938 5021 2.927871 GCTCGCATTGCCACAGAATTTT 60.928 45.455 2.41 0.00 0.00 1.82
3982 5065 7.218228 TCTGCTGCATAATCTTTCAGAAAAA 57.782 32.000 1.31 0.00 0.00 1.94
3983 5066 6.822667 TCTGCTGCATAATCTTTCAGAAAA 57.177 33.333 1.31 0.00 0.00 2.29
4039 5122 2.024176 TCCTAGCTTGGTCCTGAACA 57.976 50.000 14.12 0.00 0.00 3.18
4251 5346 1.114627 GGTGAGGGAATGGATTTGGC 58.885 55.000 0.00 0.00 0.00 4.52
4271 5366 8.438513 GTCGTTGTAGATTTATGATGATGATGG 58.561 37.037 0.00 0.00 0.00 3.51
4272 5367 9.201127 AGTCGTTGTAGATTTATGATGATGATG 57.799 33.333 0.00 0.00 0.00 3.07
4273 5368 9.201127 CAGTCGTTGTAGATTTATGATGATGAT 57.799 33.333 0.00 0.00 0.00 2.45
4313 5408 1.032794 TACCCGTAGATCTGCAGCAG 58.967 55.000 17.10 17.10 0.00 4.24
4636 5732 0.023732 CGTGCGTCTACGAATGCTTG 59.976 55.000 6.71 0.00 46.46 4.01
4750 5846 3.055530 TGTGAAACCCATGCAAAAACACT 60.056 39.130 0.00 0.00 34.36 3.55
4758 5856 6.106648 TGAAAATATTGTGAAACCCATGCA 57.893 33.333 0.00 0.00 34.36 3.96
4844 5950 6.259638 TCGCGTATTTCAAAACAGAAAAACT 58.740 32.000 5.77 0.00 40.54 2.66
4886 5992 0.965439 CGGCCAAAGGAAATGAACCA 59.035 50.000 2.24 0.00 0.00 3.67
4924 6035 9.330063 CTCAAGCATTCACAAGAAATATACCTA 57.670 33.333 0.00 0.00 37.29 3.08
5069 6188 0.250234 TTCGCCATCCTCTTGGTCTG 59.750 55.000 0.00 0.00 39.11 3.51
5099 6218 2.519377 TCGAAGTGTGTGTCCGATTT 57.481 45.000 0.00 0.00 0.00 2.17
5168 6289 2.496470 ACAGTCTACCATTTCCGTCTCC 59.504 50.000 0.00 0.00 0.00 3.71
5363 6487 0.693622 TTCCACGGGGTGAAGCATAA 59.306 50.000 2.12 0.00 35.23 1.90
5389 6513 3.207549 CCTTCCCCATCCCCTAGAAAAAT 59.792 47.826 0.00 0.00 0.00 1.82
5546 6670 6.142798 CCATTTTCATTGTTGTCTTTCTCGTG 59.857 38.462 0.00 0.00 0.00 4.35
5547 6671 6.183360 ACCATTTTCATTGTTGTCTTTCTCGT 60.183 34.615 0.00 0.00 0.00 4.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.