Multiple sequence alignment - TraesCS4D01G346400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G346400 chr4D 100.000 6369 0 0 1 6369 500344020 500337652 0.000000e+00 11762.0
1 TraesCS4D01G346400 chr4D 95.111 450 21 1 5921 6369 12614825 12615274 0.000000e+00 708.0
2 TraesCS4D01G346400 chr4D 95.000 60 3 0 5932 5991 12613958 12614017 1.890000e-15 95.3
3 TraesCS4D01G346400 chr4D 95.652 46 2 0 5921 5966 12614114 12614159 2.460000e-09 75.0
4 TraesCS4D01G346400 chr4B 91.568 2799 173 29 1 2766 643658606 643655838 0.000000e+00 3803.0
5 TraesCS4D01G346400 chr4B 89.538 1472 121 19 3928 5388 643654905 643653456 0.000000e+00 1834.0
6 TraesCS4D01G346400 chr4B 86.835 395 46 5 3515 3908 643655423 643655034 2.730000e-118 436.0
7 TraesCS4D01G346400 chr4B 90.421 261 22 3 3200 3459 643655824 643655566 2.200000e-89 340.0
8 TraesCS4D01G346400 chr4B 89.372 207 21 1 19 224 664370012 664369806 6.330000e-65 259.0
9 TraesCS4D01G346400 chr4B 85.375 253 30 4 5412 5658 643653304 643653053 8.190000e-64 255.0
10 TraesCS4D01G346400 chr4B 83.108 148 25 0 221 368 643757418 643757271 1.110000e-27 135.0
11 TraesCS4D01G346400 chr4B 90.123 81 6 2 5762 5842 611292903 611292981 3.140000e-18 104.0
12 TraesCS4D01G346400 chr5A 90.478 2468 144 44 616 3029 681010859 681008429 0.000000e+00 3171.0
13 TraesCS4D01G346400 chr5A 91.348 994 55 12 2957 3923 681008314 681007325 0.000000e+00 1330.0
14 TraesCS4D01G346400 chr5A 89.347 873 67 15 4519 5388 681006415 681005566 0.000000e+00 1074.0
15 TraesCS4D01G346400 chr5A 94.141 512 30 0 3927 4438 681007286 681006775 0.000000e+00 780.0
16 TraesCS4D01G346400 chr5A 93.902 246 14 1 342 587 681011450 681011206 2.800000e-98 370.0
17 TraesCS4D01G346400 chr5A 89.474 228 23 1 1 227 543684857 543685084 2.910000e-73 287.0
18 TraesCS4D01G346400 chr3D 97.315 447 12 0 5923 6369 569196359 569196805 0.000000e+00 760.0
19 TraesCS4D01G346400 chr3D 97.111 450 12 1 5921 6369 403691842 403691393 0.000000e+00 758.0
20 TraesCS4D01G346400 chr3D 90.453 419 35 5 5953 6369 131360645 131361060 1.210000e-151 547.0
21 TraesCS4D01G346400 chr3D 89.310 290 25 6 6082 6369 389178198 389178483 6.070000e-95 359.0
22 TraesCS4D01G346400 chr3D 96.703 91 3 0 5759 5849 403692580 403692490 1.110000e-32 152.0
23 TraesCS4D01G346400 chr3D 95.000 80 3 1 5770 5849 569185601 569185679 2.410000e-24 124.0
24 TraesCS4D01G346400 chr3D 100.000 34 0 0 5847 5880 403692443 403692410 5.330000e-06 63.9
25 TraesCS4D01G346400 chr3D 100.000 31 0 0 5959 5989 569196245 569196275 2.480000e-04 58.4
26 TraesCS4D01G346400 chr7D 97.375 381 9 1 5990 6369 486225704 486226084 0.000000e+00 647.0
27 TraesCS4D01G346400 chr7D 92.222 450 23 5 5921 6369 8294513 8294951 1.510000e-175 627.0
28 TraesCS4D01G346400 chr7D 90.351 228 20 2 1 227 100342285 100342511 1.340000e-76 298.0
29 TraesCS4D01G346400 chr7D 85.222 203 30 0 4757 4959 500994758 500994556 6.470000e-50 209.0
30 TraesCS4D01G346400 chr7D 90.441 136 13 0 1079 1214 500998791 500998656 5.070000e-41 180.0
31 TraesCS4D01G346400 chr7D 98.750 80 1 0 5770 5849 486224554 486224633 6.660000e-30 143.0
32 TraesCS4D01G346400 chr7D 93.976 83 2 3 5760 5842 534708919 534708998 8.670000e-24 122.0
33 TraesCS4D01G346400 chr7D 92.500 80 5 1 5764 5842 423612224 423612303 5.220000e-21 113.0
34 TraesCS4D01G346400 chr7D 90.123 81 8 0 5769 5849 8294186 8294266 8.730000e-19 106.0
35 TraesCS4D01G346400 chr5D 92.255 439 18 1 5931 6369 486888067 486888489 5.460000e-170 608.0
36 TraesCS4D01G346400 chr5D 90.789 228 20 1 1 227 459610491 459610718 2.890000e-78 303.0
37 TraesCS4D01G346400 chr5D 89.035 228 23 2 1 227 459684509 459684735 1.350000e-71 281.0
38 TraesCS4D01G346400 chr5D 98.765 81 1 0 5769 5849 486887655 486887735 1.850000e-30 145.0
39 TraesCS4D01G346400 chr5D 92.958 71 5 0 5921 5991 486887910 486887980 3.140000e-18 104.0
40 TraesCS4D01G346400 chr5D 89.091 55 6 0 5678 5732 483573357 483573411 1.150000e-07 69.4
41 TraesCS4D01G346400 chrUn 91.800 439 22 4 5932 6369 46104458 46104883 3.290000e-167 599.0
42 TraesCS4D01G346400 chrUn 89.474 228 22 2 1 227 41675476 41675702 2.910000e-73 287.0
43 TraesCS4D01G346400 chr7A 88.318 214 21 3 15 227 519554767 519554557 2.950000e-63 254.0
44 TraesCS4D01G346400 chr7A 76.552 435 77 16 4528 4959 567502640 567502228 1.390000e-51 215.0
45 TraesCS4D01G346400 chr7A 91.176 136 12 0 1079 1214 567506473 567506338 1.090000e-42 185.0
46 TraesCS4D01G346400 chr1D 86.404 228 30 1 1 227 90520902 90520675 1.370000e-61 248.0
47 TraesCS4D01G346400 chr4A 90.741 162 14 1 5497 5658 615205194 615205034 1.390000e-51 215.0
48 TraesCS4D01G346400 chr7B 84.729 203 31 0 4757 4959 529991135 529990933 3.010000e-48 204.0
49 TraesCS4D01G346400 chr7B 93.103 58 4 0 5675 5732 405652720 405652663 1.140000e-12 86.1
50 TraesCS4D01G346400 chr1B 94.521 73 1 3 5770 5842 458205314 458205383 6.750000e-20 110.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G346400 chr4D 500337652 500344020 6368 True 11762.000000 11762 100.000000 1 6369 1 chr4D.!!$R1 6368
1 TraesCS4D01G346400 chr4D 12613958 12615274 1316 False 292.766667 708 95.254333 5921 6369 3 chr4D.!!$F1 448
2 TraesCS4D01G346400 chr4B 643653053 643658606 5553 True 1333.600000 3803 88.747400 1 5658 5 chr4B.!!$R3 5657
3 TraesCS4D01G346400 chr5A 681005566 681011450 5884 True 1345.000000 3171 91.843200 342 5388 5 chr5A.!!$R1 5046
4 TraesCS4D01G346400 chr3D 569196245 569196805 560 False 409.200000 760 98.657500 5923 6369 2 chr3D.!!$F4 446
5 TraesCS4D01G346400 chr3D 403691393 403692580 1187 True 324.633333 758 97.938000 5759 6369 3 chr3D.!!$R1 610
6 TraesCS4D01G346400 chr7D 486224554 486226084 1530 False 395.000000 647 98.062500 5770 6369 2 chr7D.!!$F5 599
7 TraesCS4D01G346400 chr7D 8294186 8294951 765 False 366.500000 627 91.172500 5769 6369 2 chr7D.!!$F4 600
8 TraesCS4D01G346400 chr5D 486887655 486888489 834 False 285.666667 608 94.659333 5769 6369 3 chr5D.!!$F4 600

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
194 196 0.039618 GAGTGCCCCTGATTTCCCAA 59.960 55.0 0.00 0.00 0.00 4.12 F
1403 1752 0.237235 TTCGACAAAATGCACCGAGC 59.763 50.0 0.00 0.00 45.96 5.03 F
2152 2525 0.371645 CTGCGATGAGAGAAAACGGC 59.628 55.0 0.00 0.00 0.00 5.68 F
2542 2915 0.463295 AAGACATCAGGGCATCAGCG 60.463 55.0 0.00 0.00 43.41 5.18 F
3368 3938 0.600782 TCACTTGCGGTTAACGGGAC 60.601 55.0 14.24 0.39 44.51 4.46 F
4870 5932 0.119155 TGATCACCCTGGTTCCTCCT 59.881 55.0 0.00 0.00 37.07 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1940 2313 0.907704 TACTGCACTCCCCCGATGTT 60.908 55.000 0.00 0.0 0.00 2.71 R
2534 2907 0.106708 TTCACCCTATCCGCTGATGC 59.893 55.000 0.20 0.0 32.18 3.91 R
3673 4333 0.036010 ACCTGCCACAGTGACATAGC 60.036 55.000 0.62 0.0 0.00 2.97 R
4173 4946 1.128611 CGAGAAACTCACGCTTGCG 59.871 57.895 13.70 13.7 0.00 4.85 R
5319 6381 0.036765 TCGCAATCCGCTACCAAACT 60.037 50.000 0.00 0.0 39.08 2.66 R
6091 8724 1.480312 CGAGAGAGGGGTGAGATGGAT 60.480 57.143 0.00 0.0 0.00 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 1.473434 GGAAACTCCGAGTGGCCTATG 60.473 57.143 3.32 0.00 34.14 2.23
62 64 5.410067 CCTATGTTTTGCGGAATGTTGATT 58.590 37.500 0.00 0.00 0.00 2.57
68 70 6.073873 TGTTTTGCGGAATGTTGATTCATTTC 60.074 34.615 0.00 0.00 39.98 2.17
69 71 4.108699 TGCGGAATGTTGATTCATTTCC 57.891 40.909 11.02 11.02 39.98 3.13
77 79 6.782374 AATGTTGATTCATTTCCGTTCCGGT 61.782 40.000 0.00 0.00 38.10 5.28
96 98 2.286418 GGTAAATTTCAGGCGCTCGATG 60.286 50.000 7.64 1.41 0.00 3.84
108 110 1.531149 CGCTCGATGTGTCCTGTTTTT 59.469 47.619 0.00 0.00 0.00 1.94
119 121 3.314080 TGTCCTGTTTTTAGCAAAGGTCG 59.686 43.478 0.00 0.00 0.00 4.79
124 126 1.681538 TTTTAGCAAAGGTCGTGCCA 58.318 45.000 0.00 0.00 43.27 4.92
134 136 1.000717 AGGTCGTGCCAAAATTTTCCG 60.001 47.619 0.00 1.92 40.61 4.30
169 171 5.135508 TGACTTGTGCTAGAAAGTAGGAC 57.864 43.478 0.00 0.00 36.77 3.85
172 174 6.436218 TGACTTGTGCTAGAAAGTAGGACATA 59.564 38.462 7.15 0.00 43.56 2.29
183 185 1.272769 GTAGGACATATCGAGTGCCCC 59.727 57.143 2.90 4.16 0.00 5.80
190 192 2.910688 TATCGAGTGCCCCTGATTTC 57.089 50.000 0.00 0.00 0.00 2.17
193 195 1.691219 GAGTGCCCCTGATTTCCCA 59.309 57.895 0.00 0.00 0.00 4.37
194 196 0.039618 GAGTGCCCCTGATTTCCCAA 59.960 55.000 0.00 0.00 0.00 4.12
198 200 0.613260 GCCCCTGATTTCCCAAAACC 59.387 55.000 0.00 0.00 0.00 3.27
208 211 6.224584 TGATTTCCCAAAACCGGAATTAAAC 58.775 36.000 9.46 0.00 39.14 2.01
213 216 4.321378 CCCAAAACCGGAATTAAACGACAT 60.321 41.667 9.46 0.00 0.00 3.06
217 220 3.677190 ACCGGAATTAAACGACATTCCA 58.323 40.909 9.46 0.00 46.27 3.53
231 234 4.148696 CGACATTCCAGCAAAACATCAAAC 59.851 41.667 0.00 0.00 0.00 2.93
236 239 4.873817 TCCAGCAAAACATCAAACTCATG 58.126 39.130 0.00 0.00 0.00 3.07
238 241 5.534278 TCCAGCAAAACATCAAACTCATGTA 59.466 36.000 0.00 0.00 33.12 2.29
243 246 8.362639 AGCAAAACATCAAACTCATGTATCTTT 58.637 29.630 0.00 0.00 33.12 2.52
368 371 1.482593 GGAGCGAGATGGAAAAGAGGA 59.517 52.381 0.00 0.00 0.00 3.71
373 376 2.284190 GAGATGGAAAAGAGGAAGGCG 58.716 52.381 0.00 0.00 0.00 5.52
410 413 1.745087 CACACACATGGCATAGTTCCC 59.255 52.381 0.00 0.00 0.00 3.97
415 418 2.126882 ACATGGCATAGTTCCCTAGCA 58.873 47.619 0.00 0.00 0.00 3.49
561 564 3.437049 GGTCTTACACATCCTTCACAAGC 59.563 47.826 0.00 0.00 0.00 4.01
584 587 4.818005 CGTGGTGGGACTAAACTTTTTACT 59.182 41.667 0.00 0.00 0.00 2.24
726 1049 9.554395 TTGAAGACAGAAACACTCATGTATTTA 57.446 29.630 0.00 0.00 38.45 1.40
956 1294 1.004560 TCCGAGCAGAGCACCAAAG 60.005 57.895 0.00 0.00 0.00 2.77
1064 1402 3.706373 GGAGGAGGAAGCGTGGCA 61.706 66.667 0.00 0.00 0.00 4.92
1065 1403 2.125350 GAGGAGGAAGCGTGGCAG 60.125 66.667 0.00 0.00 0.00 4.85
1240 1587 3.438087 CACTAACCCACTTGCTTCATGAG 59.562 47.826 0.00 0.00 0.00 2.90
1243 1590 1.081892 CCCACTTGCTTCATGAGACG 58.918 55.000 0.00 0.00 0.00 4.18
1244 1591 1.338105 CCCACTTGCTTCATGAGACGA 60.338 52.381 0.00 0.00 0.00 4.20
1245 1592 2.416747 CCACTTGCTTCATGAGACGAA 58.583 47.619 0.00 0.00 0.00 3.85
1246 1593 2.807967 CCACTTGCTTCATGAGACGAAA 59.192 45.455 0.00 0.00 0.00 3.46
1247 1594 3.364366 CCACTTGCTTCATGAGACGAAAC 60.364 47.826 0.00 0.00 0.00 2.78
1248 1595 3.496130 CACTTGCTTCATGAGACGAAACT 59.504 43.478 0.00 0.00 0.00 2.66
1249 1596 3.496130 ACTTGCTTCATGAGACGAAACTG 59.504 43.478 0.00 0.00 0.00 3.16
1250 1597 3.111853 TGCTTCATGAGACGAAACTGT 57.888 42.857 0.00 0.00 0.00 3.55
1251 1598 3.466836 TGCTTCATGAGACGAAACTGTT 58.533 40.909 0.00 0.00 0.00 3.16
1252 1599 4.627058 TGCTTCATGAGACGAAACTGTTA 58.373 39.130 0.00 0.00 0.00 2.41
1253 1600 5.237815 TGCTTCATGAGACGAAACTGTTAT 58.762 37.500 0.00 0.00 0.00 1.89
1254 1601 5.700832 TGCTTCATGAGACGAAACTGTTATT 59.299 36.000 0.00 0.00 0.00 1.40
1255 1602 6.017933 GCTTCATGAGACGAAACTGTTATTG 58.982 40.000 0.00 0.00 0.00 1.90
1256 1603 6.347725 GCTTCATGAGACGAAACTGTTATTGT 60.348 38.462 0.00 0.00 0.00 2.71
1257 1604 6.466308 TCATGAGACGAAACTGTTATTGTG 57.534 37.500 0.00 0.00 0.00 3.33
1268 1615 6.851222 AACTGTTATTGTGTGAGTTCAGAG 57.149 37.500 0.00 0.00 0.00 3.35
1285 1632 3.055819 TCAGAGTTGTAGATCAAGGGTGC 60.056 47.826 0.00 0.00 36.66 5.01
1299 1646 2.745968 AGGGTGCCTTGTTTTCTGAAA 58.254 42.857 0.00 0.00 0.00 2.69
1301 1648 3.517500 AGGGTGCCTTGTTTTCTGAAAAA 59.482 39.130 16.47 2.48 31.13 1.94
1357 1706 7.280356 AGATTTACCTTTGGTATATTGCTCGT 58.720 34.615 0.00 0.00 38.05 4.18
1403 1752 0.237235 TTCGACAAAATGCACCGAGC 59.763 50.000 0.00 0.00 45.96 5.03
1443 1799 1.771783 AACCCCCTCGCCTTAACGTT 61.772 55.000 5.88 5.88 0.00 3.99
1449 1805 1.868498 CCTCGCCTTAACGTTGTGAAA 59.132 47.619 11.99 0.00 0.00 2.69
1510 1866 3.266772 AGGGGACAGAAATGATGTGCTAA 59.733 43.478 0.00 0.00 38.85 3.09
1512 1868 4.142381 GGGGACAGAAATGATGTGCTAAAC 60.142 45.833 0.00 0.00 38.85 2.01
1520 1876 8.939929 CAGAAATGATGTGCTAAACTCTTTCTA 58.060 33.333 0.00 0.00 0.00 2.10
1535 1891 5.188327 TCTTTCTACTGCCAGATGATACG 57.812 43.478 0.00 0.00 0.00 3.06
1565 1921 1.671742 CGTGCCAGGGAACTACACT 59.328 57.895 0.00 0.00 41.92 3.55
1628 1984 1.301401 CGACCAAGGAAGGTTCGCA 60.301 57.895 0.00 0.00 43.38 5.10
1752 2117 5.118990 CAGTACCCCAATACATCTGAACTG 58.881 45.833 0.00 0.00 0.00 3.16
1793 2166 8.671384 TGCTAATGATACATACTTGGGTTTAC 57.329 34.615 0.00 0.00 0.00 2.01
1810 2183 7.172342 TGGGTTTACACTGCTTTATTGATACT 58.828 34.615 0.00 0.00 0.00 2.12
1878 2251 0.460987 GAGTTCAGCACCTCGGATGG 60.461 60.000 0.00 0.00 0.00 3.51
1940 2313 1.202348 CGACTGCTCTGGTCACATACA 59.798 52.381 0.00 0.00 33.73 2.29
1941 2314 2.352715 CGACTGCTCTGGTCACATACAA 60.353 50.000 0.00 0.00 33.73 2.41
2152 2525 0.371645 CTGCGATGAGAGAAAACGGC 59.628 55.000 0.00 0.00 0.00 5.68
2290 2663 2.030274 GGTTGTTTTCATAGTTGCCGCT 60.030 45.455 0.00 0.00 0.00 5.52
2302 2675 1.303561 TGCCGCTGCATCCTCTTTT 60.304 52.632 0.00 0.00 44.23 2.27
2365 2738 4.203226 CCACATCTCTAGCTCTCAGTACA 58.797 47.826 0.00 0.00 0.00 2.90
2513 2886 4.158025 TGACTCGGAAAGATAGACCAGAAC 59.842 45.833 0.00 0.00 0.00 3.01
2519 2892 5.701290 CGGAAAGATAGACCAGAACAAGTTT 59.299 40.000 0.00 0.00 0.00 2.66
2542 2915 0.463295 AAGACATCAGGGCATCAGCG 60.463 55.000 0.00 0.00 43.41 5.18
2554 2927 1.475034 GCATCAGCGGATAGGGTGAAA 60.475 52.381 0.00 0.00 46.27 2.69
2565 2938 6.036844 GCGGATAGGGTGAAAAGTTTTAGTAG 59.963 42.308 0.00 0.00 0.00 2.57
2711 3084 3.259374 TGAGTGGGAGTAAGAGCTTTCTG 59.741 47.826 0.00 0.00 0.00 3.02
2712 3085 3.243724 AGTGGGAGTAAGAGCTTTCTGT 58.756 45.455 0.00 0.00 0.00 3.41
2713 3086 3.007398 AGTGGGAGTAAGAGCTTTCTGTG 59.993 47.826 0.00 0.00 0.00 3.66
2715 3088 2.351455 GGAGTAAGAGCTTTCTGTGCC 58.649 52.381 0.00 0.00 0.00 5.01
2716 3089 2.027653 GGAGTAAGAGCTTTCTGTGCCT 60.028 50.000 0.00 0.00 0.00 4.75
2717 3090 3.558109 GGAGTAAGAGCTTTCTGTGCCTT 60.558 47.826 0.00 0.00 0.00 4.35
2729 3107 9.243105 AGCTTTCTGTGCCTTATTATTTTTCTA 57.757 29.630 0.00 0.00 0.00 2.10
2738 3116 8.976353 TGCCTTATTATTTTTCTATTGCCTCAA 58.024 29.630 0.00 0.00 0.00 3.02
2796 3174 7.435068 TTTTCAGTTGGTTCTATGCTAAGTC 57.565 36.000 0.00 0.00 0.00 3.01
2806 3184 8.540388 TGGTTCTATGCTAAGTCAGAAGTATTT 58.460 33.333 0.00 0.00 0.00 1.40
2826 3204 8.491134 AGTATTTAATGTAGTCATTGCAGGGTA 58.509 33.333 4.06 0.00 43.17 3.69
2828 3206 4.568072 AATGTAGTCATTGCAGGGTACA 57.432 40.909 0.00 0.00 41.95 2.90
2831 3209 5.685520 TGTAGTCATTGCAGGGTACATAA 57.314 39.130 0.00 0.00 0.00 1.90
2876 3254 9.362539 AGTATTGTATTGTTGGAAGTACTTACG 57.637 33.333 13.21 0.00 0.00 3.18
2922 3458 9.790344 ATTTTCATGAATCCTCTATTCCTGTAG 57.210 33.333 9.40 0.00 42.97 2.74
2923 3459 7.921041 TTCATGAATCCTCTATTCCTGTAGT 57.079 36.000 3.38 0.00 42.97 2.73
2924 3460 9.434275 TTTCATGAATCCTCTATTCCTGTAGTA 57.566 33.333 9.40 0.00 42.97 1.82
2925 3461 8.410673 TCATGAATCCTCTATTCCTGTAGTAC 57.589 38.462 0.00 0.00 42.97 2.73
2926 3462 8.004801 TCATGAATCCTCTATTCCTGTAGTACA 58.995 37.037 2.36 2.36 42.97 2.90
2927 3463 7.584122 TGAATCCTCTATTCCTGTAGTACAC 57.416 40.000 0.00 0.00 42.97 2.90
2928 3464 7.123383 TGAATCCTCTATTCCTGTAGTACACA 58.877 38.462 0.00 0.00 42.97 3.72
2929 3465 7.618117 TGAATCCTCTATTCCTGTAGTACACAA 59.382 37.037 0.00 0.00 42.97 3.33
2930 3466 7.973048 ATCCTCTATTCCTGTAGTACACAAA 57.027 36.000 0.00 0.00 36.48 2.83
2937 3473 5.640189 TCCTGTAGTACACAAACTCTAGC 57.360 43.478 0.00 0.00 36.48 3.42
2950 3486 9.947669 ACACAAACTCTAGCTATAATTAGTACG 57.052 33.333 0.00 0.00 0.00 3.67
2952 3488 8.081025 ACAAACTCTAGCTATAATTAGTACGGC 58.919 37.037 0.00 0.00 0.00 5.68
2973 3509 8.768501 ACGGCTTGATCTCTATATATGGATTA 57.231 34.615 0.00 0.00 0.00 1.75
2974 3510 9.201989 ACGGCTTGATCTCTATATATGGATTAA 57.798 33.333 0.00 2.06 0.00 1.40
3006 3574 2.841442 ACAGGCTGGTTACTGACTTC 57.159 50.000 20.34 0.00 38.09 3.01
3011 3579 1.807142 GCTGGTTACTGACTTCCAAGC 59.193 52.381 0.00 0.00 0.00 4.01
3035 3603 9.909644 AGCGGTACTGTAGTATTTATAATTCTG 57.090 33.333 3.10 0.00 32.54 3.02
3079 3647 6.709018 TTTTATTGATTTAGCTAGCACCCC 57.291 37.500 18.83 2.41 0.00 4.95
3103 3671 7.147620 CCCCCTCATATAAGTTACTGTGTGTAA 60.148 40.741 0.00 0.00 38.67 2.41
3174 3744 5.578005 AGATCAATTGCAATTCTGGACTG 57.422 39.130 21.70 9.97 0.00 3.51
3175 3745 5.258841 AGATCAATTGCAATTCTGGACTGA 58.741 37.500 21.70 14.94 0.00 3.41
3185 3755 5.048504 GCAATTCTGGACTGATCAAGTTCAA 60.049 40.000 0.00 0.00 44.20 2.69
3203 3773 7.654022 AGTTCAACTTTAATTTCAAGGGTCA 57.346 32.000 0.00 0.00 0.00 4.02
3205 3775 7.979537 AGTTCAACTTTAATTTCAAGGGTCAAC 59.020 33.333 0.00 0.00 0.00 3.18
3212 3782 9.757227 CTTTAATTTCAAGGGTCAACATTAACA 57.243 29.630 0.00 0.00 0.00 2.41
3315 3885 2.106511 AGCACTTCCTTGCAACCTTAGA 59.893 45.455 0.00 0.00 45.62 2.10
3345 3915 6.536224 GCCAAGAACCATTATTTGATTTCCTG 59.464 38.462 0.00 0.00 0.00 3.86
3368 3938 0.600782 TCACTTGCGGTTAACGGGAC 60.601 55.000 14.24 0.39 44.51 4.46
3370 3940 0.601841 ACTTGCGGTTAACGGGACTG 60.602 55.000 14.24 9.48 44.51 3.51
3575 4233 4.253685 TGCTGCAGTAAAATCTGGTACTC 58.746 43.478 16.64 0.00 36.12 2.59
3666 4325 5.067413 GCCTATTTCCTTTGGCTTACTTACC 59.933 44.000 0.00 0.00 41.92 2.85
3673 4333 0.899720 TGGCTTACTTACCGTGGGAG 59.100 55.000 0.00 0.00 0.00 4.30
3680 4340 1.755380 ACTTACCGTGGGAGCTATGTC 59.245 52.381 0.00 0.00 0.00 3.06
3750 4410 4.000325 TGTCGGATATATGGGCAAAATCG 59.000 43.478 0.00 0.00 0.00 3.34
3795 4455 1.574526 ATGCTGTGTGGCCTATGGGT 61.575 55.000 3.32 0.00 34.45 4.51
3911 4645 4.955811 ACTCTCCAGTGATGTTGTTGTA 57.044 40.909 0.00 0.00 0.00 2.41
3923 4657 4.457834 TGTTGTTGTACCCCAAACTTTG 57.542 40.909 0.00 0.00 34.07 2.77
4090 4863 1.338020 CCAACTTTCTGGTTGACTGGC 59.662 52.381 8.64 0.00 46.55 4.85
4173 4946 1.070914 GTAGCTCCTGATGGTAAGCCC 59.929 57.143 0.00 0.00 34.71 5.19
4187 4960 3.660111 GCCCGCAAGCGTGAGTTT 61.660 61.111 13.80 0.00 37.81 2.66
4197 4970 0.158928 GCGTGAGTTTCTCGACAACG 59.841 55.000 4.90 0.00 35.64 4.10
4241 5014 2.306847 GGTTTTCCTTGCAGTCCTTGA 58.693 47.619 0.00 0.00 36.94 3.02
4266 5039 1.859080 GCGGAGGTAATTAAGCGACAG 59.141 52.381 0.00 0.00 0.00 3.51
4290 5063 9.477484 CAGTCACTTGTAGTAACTAATTTGAGT 57.523 33.333 0.00 0.00 22.37 3.41
4298 5071 9.038072 TGTAGTAACTAATTTGAGTACCATGGA 57.962 33.333 21.47 0.00 0.00 3.41
4304 5077 9.975218 AACTAATTTGAGTACCATGGAGTAATT 57.025 29.630 21.47 15.50 0.00 1.40
4343 5116 2.423577 ACCGGTCAATTGTGTAGCTTC 58.576 47.619 0.00 0.00 0.00 3.86
4345 5118 2.673368 CCGGTCAATTGTGTAGCTTCTC 59.327 50.000 5.13 0.00 0.00 2.87
4352 5125 5.705441 TCAATTGTGTAGCTTCTCGGAAAAT 59.295 36.000 5.13 0.00 0.00 1.82
4432 5205 1.990799 TTGCAAGAGATCGTACCGTG 58.009 50.000 0.00 0.00 0.00 4.94
4438 5211 2.651455 AGAGATCGTACCGTGATGGAA 58.349 47.619 0.00 0.00 42.00 3.53
4453 5226 1.595311 TGGAATGGGTAGGTGCTCAT 58.405 50.000 0.00 0.00 0.00 2.90
4463 5239 2.611225 AGGTGCTCATACTAAGCTGC 57.389 50.000 0.00 0.00 40.50 5.25
4464 5240 1.139853 AGGTGCTCATACTAAGCTGCC 59.860 52.381 0.00 0.00 40.50 4.85
4499 5277 6.019961 CCGTTTTTACGTACTCTGTGTTGTAA 60.020 38.462 0.00 0.00 31.21 2.41
4508 5286 8.067784 ACGTACTCTGTGTTGTAAAATGATTTG 58.932 33.333 0.00 0.00 0.00 2.32
4657 5709 3.635591 AGCTGTTGCCAATAGCCTTTAT 58.364 40.909 20.72 1.06 45.57 1.40
4674 5726 7.051000 AGCCTTTATAAAAGAGGTTAGCTCAG 58.949 38.462 14.09 0.00 33.03 3.35
4679 5731 4.566426 AAAAGAGGTTAGCTCAGCTCAT 57.434 40.909 24.75 13.40 42.74 2.90
4683 5735 4.285863 AGAGGTTAGCTCAGCTCATAAGT 58.714 43.478 24.75 5.17 42.74 2.24
4686 5738 4.467795 AGGTTAGCTCAGCTCATAAGTTGA 59.532 41.667 0.00 0.00 40.05 3.18
4693 5745 5.447010 GCTCAGCTCATAAGTTGAACACATC 60.447 44.000 0.00 0.00 41.50 3.06
4694 5746 5.798132 TCAGCTCATAAGTTGAACACATCT 58.202 37.500 0.00 0.00 39.48 2.90
4706 5758 8.764524 AGTTGAACACATCTGACTACTATTTC 57.235 34.615 0.00 0.00 0.00 2.17
4707 5759 8.589338 AGTTGAACACATCTGACTACTATTTCT 58.411 33.333 0.00 0.00 0.00 2.52
4725 5787 9.956640 ACTATTTCTCAATTTCTCTCATCAAGT 57.043 29.630 0.00 0.00 0.00 3.16
4730 5792 9.862371 TTCTCAATTTCTCTCATCAAGTAGTAC 57.138 33.333 0.00 0.00 0.00 2.73
4741 5803 9.393512 TCTCATCAAGTAGTACTAAGTTAGTCC 57.606 37.037 18.77 8.17 40.14 3.85
4742 5804 8.517062 TCATCAAGTAGTACTAAGTTAGTCCC 57.483 38.462 18.77 10.96 40.14 4.46
4743 5805 7.559170 TCATCAAGTAGTACTAAGTTAGTCCCC 59.441 40.741 18.77 8.64 40.14 4.81
4744 5806 6.190587 TCAAGTAGTACTAAGTTAGTCCCCC 58.809 44.000 18.77 6.69 40.14 5.40
4745 5807 4.786425 AGTAGTACTAAGTTAGTCCCCCG 58.214 47.826 18.77 0.00 40.14 5.73
4746 5808 3.746792 AGTACTAAGTTAGTCCCCCGT 57.253 47.619 18.77 0.00 40.14 5.28
4747 5809 3.625853 AGTACTAAGTTAGTCCCCCGTC 58.374 50.000 18.77 3.42 40.14 4.79
4748 5810 2.915657 ACTAAGTTAGTCCCCCGTCT 57.084 50.000 9.85 0.00 32.47 4.18
4749 5811 4.475016 AGTACTAAGTTAGTCCCCCGTCTA 59.525 45.833 18.77 0.00 40.14 2.59
4798 5860 3.119137 GGTCAACTACATGGAAAATGGCC 60.119 47.826 0.00 0.00 0.00 5.36
4837 5899 5.181811 TCTGAACAGTGAAAATGCATACAGG 59.818 40.000 0.00 0.00 33.50 4.00
4844 5906 5.126061 AGTGAAAATGCATACAGGATGGTTC 59.874 40.000 0.00 0.00 43.62 3.62
4859 5921 3.350219 TGGTTCTAAAGCTGATCACCC 57.650 47.619 0.00 0.00 0.00 4.61
4870 5932 0.119155 TGATCACCCTGGTTCCTCCT 59.881 55.000 0.00 0.00 37.07 3.69
4900 5962 3.142174 GGTTGAGTTTGAAGGAGGACTG 58.858 50.000 0.00 0.00 0.00 3.51
4958 6020 1.777199 GACGCAAACTTCGGGTACG 59.223 57.895 0.00 0.00 42.74 3.67
4961 6023 0.940519 CGCAAACTTCGGGTACGTCA 60.941 55.000 0.00 0.00 41.85 4.35
4972 6034 0.668401 GGTACGTCAACCTCCCAACG 60.668 60.000 0.00 0.00 40.77 4.10
4976 6038 1.228154 GTCAACCTCCCAACGCCTT 60.228 57.895 0.00 0.00 0.00 4.35
4977 6039 1.228124 TCAACCTCCCAACGCCTTG 60.228 57.895 0.00 0.00 0.00 3.61
4996 6058 1.977056 GCCATGGCATCTGATTCTGA 58.023 50.000 32.08 0.00 41.49 3.27
4997 6059 2.515854 GCCATGGCATCTGATTCTGAT 58.484 47.619 32.08 0.54 41.49 2.90
4998 6060 2.488545 GCCATGGCATCTGATTCTGATC 59.511 50.000 32.08 0.00 41.49 2.92
4999 6061 3.082548 CCATGGCATCTGATTCTGATCC 58.917 50.000 0.00 8.39 0.00 3.36
5000 6062 2.538512 TGGCATCTGATTCTGATCCG 57.461 50.000 3.29 0.00 0.00 4.18
5001 6063 2.041701 TGGCATCTGATTCTGATCCGA 58.958 47.619 3.29 0.00 31.36 4.55
5002 6064 2.036862 TGGCATCTGATTCTGATCCGAG 59.963 50.000 3.29 0.00 30.49 4.63
5003 6065 2.036992 GGCATCTGATTCTGATCCGAGT 59.963 50.000 3.29 0.00 30.49 4.18
5004 6066 3.316283 GCATCTGATTCTGATCCGAGTC 58.684 50.000 3.29 3.14 30.49 3.36
5005 6067 3.005684 GCATCTGATTCTGATCCGAGTCT 59.994 47.826 10.27 0.00 30.49 3.24
5006 6068 4.501229 GCATCTGATTCTGATCCGAGTCTT 60.501 45.833 10.27 0.00 30.49 3.01
5007 6069 5.599732 CATCTGATTCTGATCCGAGTCTTT 58.400 41.667 10.27 0.00 30.49 2.52
5008 6070 5.255710 TCTGATTCTGATCCGAGTCTTTC 57.744 43.478 10.27 0.00 0.00 2.62
5009 6071 4.952957 TCTGATTCTGATCCGAGTCTTTCT 59.047 41.667 10.27 0.00 0.00 2.52
5018 6080 4.785511 TCCGAGTCTTTCTAGAAACTGG 57.214 45.455 13.99 12.05 30.65 4.00
5034 6096 5.415077 AGAAACTGGAGAAGCATTTCTGATG 59.585 40.000 0.00 0.00 43.63 3.07
5215 6277 1.911471 CTGGAAGGAAGGGGAGCTC 59.089 63.158 4.71 4.71 0.00 4.09
5225 6287 1.452833 GGGGAGCTCCATGAAGCAC 60.453 63.158 33.29 13.59 45.00 4.40
5243 6305 3.118775 AGCACTGCTATGGTCGTCAAATA 60.119 43.478 0.21 0.00 36.99 1.40
5247 6309 5.523552 CACTGCTATGGTCGTCAAATAATCA 59.476 40.000 0.00 0.00 0.00 2.57
5252 6314 8.465999 TGCTATGGTCGTCAAATAATCAAAATT 58.534 29.630 0.00 0.00 0.00 1.82
5253 6315 9.301153 GCTATGGTCGTCAAATAATCAAAATTT 57.699 29.630 0.00 0.00 0.00 1.82
5311 6373 0.529773 TGACGCTTCGCCATGGTATC 60.530 55.000 14.67 0.00 0.00 2.24
5319 6381 3.248495 TCGCCATGGTATCGTTTACAA 57.752 42.857 14.67 0.00 0.00 2.41
5347 6409 1.089481 GCGGATTGCGATGTCTGGAA 61.089 55.000 0.29 0.00 0.00 3.53
5361 6423 1.003580 TCTGGAAACATGGCCACTCTC 59.996 52.381 8.16 1.98 41.51 3.20
5364 6426 1.457346 GAAACATGGCCACTCTCCAG 58.543 55.000 8.16 0.00 36.98 3.86
5369 6431 1.211212 CATGGCCACTCTCCAGATGAA 59.789 52.381 8.16 0.00 36.98 2.57
5378 6440 1.757118 TCTCCAGATGAATGTCCCGTC 59.243 52.381 0.00 0.00 0.00 4.79
5380 6442 0.530650 CCAGATGAATGTCCCGTCCG 60.531 60.000 0.00 0.00 0.00 4.79
5381 6443 0.175760 CAGATGAATGTCCCGTCCGT 59.824 55.000 0.00 0.00 0.00 4.69
5382 6444 0.175760 AGATGAATGTCCCGTCCGTG 59.824 55.000 0.00 0.00 0.00 4.94
5383 6445 1.429148 GATGAATGTCCCGTCCGTGC 61.429 60.000 0.00 0.00 0.00 5.34
5384 6446 2.047655 GAATGTCCCGTCCGTGCA 60.048 61.111 0.00 0.00 0.00 4.57
5385 6447 1.449601 GAATGTCCCGTCCGTGCAT 60.450 57.895 0.00 0.00 0.00 3.96
5386 6448 1.002624 AATGTCCCGTCCGTGCATT 60.003 52.632 0.00 0.00 0.00 3.56
5389 6451 0.035036 TGTCCCGTCCGTGCATTTTA 59.965 50.000 0.00 0.00 0.00 1.52
5390 6452 1.339247 TGTCCCGTCCGTGCATTTTAT 60.339 47.619 0.00 0.00 0.00 1.40
5391 6453 1.741145 GTCCCGTCCGTGCATTTTATT 59.259 47.619 0.00 0.00 0.00 1.40
5392 6454 2.162809 GTCCCGTCCGTGCATTTTATTT 59.837 45.455 0.00 0.00 0.00 1.40
5393 6455 2.162608 TCCCGTCCGTGCATTTTATTTG 59.837 45.455 0.00 0.00 0.00 2.32
5394 6456 2.094957 CCCGTCCGTGCATTTTATTTGT 60.095 45.455 0.00 0.00 0.00 2.83
5395 6457 3.127203 CCCGTCCGTGCATTTTATTTGTA 59.873 43.478 0.00 0.00 0.00 2.41
5396 6458 4.201970 CCCGTCCGTGCATTTTATTTGTAT 60.202 41.667 0.00 0.00 0.00 2.29
5397 6459 5.336744 CCGTCCGTGCATTTTATTTGTATT 58.663 37.500 0.00 0.00 0.00 1.89
5398 6460 5.229052 CCGTCCGTGCATTTTATTTGTATTG 59.771 40.000 0.00 0.00 0.00 1.90
5399 6461 5.229052 CGTCCGTGCATTTTATTTGTATTGG 59.771 40.000 0.00 0.00 0.00 3.16
5400 6462 6.326375 GTCCGTGCATTTTATTTGTATTGGA 58.674 36.000 0.00 0.00 0.00 3.53
5401 6463 6.978080 GTCCGTGCATTTTATTTGTATTGGAT 59.022 34.615 0.00 0.00 0.00 3.41
5404 6466 9.128107 CCGTGCATTTTATTTGTATTGGATATC 57.872 33.333 0.00 0.00 0.00 1.63
5405 6467 9.897744 CGTGCATTTTATTTGTATTGGATATCT 57.102 29.630 2.05 0.00 0.00 1.98
5407 6469 9.695526 TGCATTTTATTTGTATTGGATATCTGC 57.304 29.630 2.05 0.00 0.00 4.26
5408 6470 9.918630 GCATTTTATTTGTATTGGATATCTGCT 57.081 29.630 2.05 0.00 0.00 4.24
5415 6606 5.787380 TGTATTGGATATCTGCTACTGCTG 58.213 41.667 2.05 0.00 40.48 4.41
5441 6632 7.416101 GCTGCTCCTTCTTCAGCTTTTATTTAT 60.416 37.037 6.24 0.00 46.93 1.40
5443 6634 8.893727 TGCTCCTTCTTCAGCTTTTATTTATAC 58.106 33.333 0.00 0.00 36.53 1.47
5453 6644 9.747898 TCAGCTTTTATTTATACTTTTCCAGGA 57.252 29.630 0.00 0.00 0.00 3.86
5461 6652 2.755952 ACTTTTCCAGGAAGCAAGGT 57.244 45.000 15.39 0.85 0.00 3.50
5491 6682 9.739276 AATTAGTTGAAGATTGTTAGGATGTGA 57.261 29.630 0.00 0.00 0.00 3.58
5523 6714 6.772716 ACACCACAAAGAGTTGTAATGAGAAT 59.227 34.615 8.46 0.00 46.47 2.40
5526 6717 8.950210 ACCACAAAGAGTTGTAATGAGAATATG 58.050 33.333 0.00 0.00 46.47 1.78
5539 6730 9.136323 GTAATGAGAATATGAAATGGGGAGTTT 57.864 33.333 0.00 0.00 0.00 2.66
5544 6735 9.408648 GAGAATATGAAATGGGGAGTTTCTTAA 57.591 33.333 0.00 0.00 36.71 1.85
5549 6740 7.227049 TGAAATGGGGAGTTTCTTAAATGAC 57.773 36.000 0.00 0.00 36.71 3.06
5550 6741 7.010160 TGAAATGGGGAGTTTCTTAAATGACT 58.990 34.615 0.00 0.00 36.71 3.41
5551 6742 8.167392 TGAAATGGGGAGTTTCTTAAATGACTA 58.833 33.333 0.00 0.00 36.71 2.59
5552 6743 8.950007 AAATGGGGAGTTTCTTAAATGACTAA 57.050 30.769 0.00 0.00 0.00 2.24
5553 6744 9.547279 AAATGGGGAGTTTCTTAAATGACTAAT 57.453 29.630 0.00 0.00 0.00 1.73
5554 6745 9.547279 AATGGGGAGTTTCTTAAATGACTAATT 57.453 29.630 0.00 0.00 0.00 1.40
5555 6746 8.950007 TGGGGAGTTTCTTAAATGACTAATTT 57.050 30.769 0.00 0.00 41.47 1.82
5632 6829 4.451900 TGAGAGTCAAGTTTTCCCAACTC 58.548 43.478 0.00 0.00 34.69 3.01
5647 6844 1.200020 CAACTCGAAGCACCCAAATCC 59.800 52.381 0.00 0.00 0.00 3.01
5648 6845 0.400213 ACTCGAAGCACCCAAATCCA 59.600 50.000 0.00 0.00 0.00 3.41
5658 6855 1.203174 ACCCAAATCCAAGTCAAGGGG 60.203 52.381 0.00 0.00 39.15 4.79
5659 6856 1.077005 CCCAAATCCAAGTCAAGGGGA 59.923 52.381 0.00 0.00 36.40 4.81
5660 6857 2.492567 CCCAAATCCAAGTCAAGGGGAA 60.493 50.000 0.00 0.00 36.40 3.97
5661 6858 2.827921 CCAAATCCAAGTCAAGGGGAAG 59.172 50.000 0.00 0.00 33.73 3.46
5662 6859 2.827921 CAAATCCAAGTCAAGGGGAAGG 59.172 50.000 0.00 0.00 33.73 3.46
5663 6860 0.332972 ATCCAAGTCAAGGGGAAGGC 59.667 55.000 0.00 0.00 33.73 4.35
5664 6861 0.772124 TCCAAGTCAAGGGGAAGGCT 60.772 55.000 0.00 0.00 0.00 4.58
5665 6862 0.991920 CCAAGTCAAGGGGAAGGCTA 59.008 55.000 0.00 0.00 0.00 3.93
5666 6863 1.354368 CCAAGTCAAGGGGAAGGCTAA 59.646 52.381 0.00 0.00 0.00 3.09
5667 6864 2.437413 CAAGTCAAGGGGAAGGCTAAC 58.563 52.381 0.00 0.00 0.00 2.34
5668 6865 1.742308 AGTCAAGGGGAAGGCTAACA 58.258 50.000 0.00 0.00 0.00 2.41
5669 6866 2.062636 AGTCAAGGGGAAGGCTAACAA 58.937 47.619 0.00 0.00 0.00 2.83
5670 6867 2.160205 GTCAAGGGGAAGGCTAACAAC 58.840 52.381 0.00 0.00 0.00 3.32
5671 6868 1.777878 TCAAGGGGAAGGCTAACAACA 59.222 47.619 0.00 0.00 0.00 3.33
5672 6869 2.378547 TCAAGGGGAAGGCTAACAACAT 59.621 45.455 0.00 0.00 0.00 2.71
5673 6870 2.755103 CAAGGGGAAGGCTAACAACATC 59.245 50.000 0.00 0.00 0.00 3.06
5674 6871 2.279173 AGGGGAAGGCTAACAACATCT 58.721 47.619 0.00 0.00 0.00 2.90
5675 6872 3.460825 AGGGGAAGGCTAACAACATCTA 58.539 45.455 0.00 0.00 0.00 1.98
5676 6873 3.200165 AGGGGAAGGCTAACAACATCTAC 59.800 47.826 0.00 0.00 0.00 2.59
5677 6874 3.054655 GGGGAAGGCTAACAACATCTACA 60.055 47.826 0.00 0.00 0.00 2.74
5678 6875 4.385310 GGGGAAGGCTAACAACATCTACAT 60.385 45.833 0.00 0.00 0.00 2.29
5679 6876 4.576463 GGGAAGGCTAACAACATCTACATG 59.424 45.833 0.00 0.00 35.92 3.21
5680 6877 4.035675 GGAAGGCTAACAACATCTACATGC 59.964 45.833 0.00 0.00 32.57 4.06
5681 6878 4.220693 AGGCTAACAACATCTACATGCA 57.779 40.909 0.00 0.00 32.57 3.96
5682 6879 4.785301 AGGCTAACAACATCTACATGCAT 58.215 39.130 0.00 0.00 32.57 3.96
5683 6880 5.928976 AGGCTAACAACATCTACATGCATA 58.071 37.500 0.00 0.00 32.57 3.14
5684 6881 5.760253 AGGCTAACAACATCTACATGCATAC 59.240 40.000 0.00 0.00 32.57 2.39
5685 6882 5.760253 GGCTAACAACATCTACATGCATACT 59.240 40.000 0.00 0.00 32.57 2.12
5686 6883 6.073548 GGCTAACAACATCTACATGCATACTC 60.074 42.308 0.00 0.00 32.57 2.59
5687 6884 6.703607 GCTAACAACATCTACATGCATACTCT 59.296 38.462 0.00 0.00 32.57 3.24
5688 6885 7.225538 GCTAACAACATCTACATGCATACTCTT 59.774 37.037 0.00 0.00 32.57 2.85
5689 6886 7.545362 AACAACATCTACATGCATACTCTTC 57.455 36.000 0.00 0.00 32.57 2.87
5690 6887 5.750547 ACAACATCTACATGCATACTCTTCG 59.249 40.000 0.00 0.00 32.57 3.79
5691 6888 5.521906 ACATCTACATGCATACTCTTCGT 57.478 39.130 0.00 0.00 32.57 3.85
5692 6889 5.907207 ACATCTACATGCATACTCTTCGTT 58.093 37.500 0.00 0.00 32.57 3.85
5693 6890 5.980116 ACATCTACATGCATACTCTTCGTTC 59.020 40.000 0.00 0.00 32.57 3.95
5694 6891 5.576447 TCTACATGCATACTCTTCGTTCA 57.424 39.130 0.00 0.00 0.00 3.18
5695 6892 5.340803 TCTACATGCATACTCTTCGTTCAC 58.659 41.667 0.00 0.00 0.00 3.18
5696 6893 3.925379 ACATGCATACTCTTCGTTCACA 58.075 40.909 0.00 0.00 0.00 3.58
5697 6894 3.679980 ACATGCATACTCTTCGTTCACAC 59.320 43.478 0.00 0.00 0.00 3.82
5698 6895 3.378911 TGCATACTCTTCGTTCACACA 57.621 42.857 0.00 0.00 0.00 3.72
5699 6896 3.057019 TGCATACTCTTCGTTCACACAC 58.943 45.455 0.00 0.00 0.00 3.82
5700 6897 3.057019 GCATACTCTTCGTTCACACACA 58.943 45.455 0.00 0.00 0.00 3.72
5701 6898 3.120991 GCATACTCTTCGTTCACACACAC 60.121 47.826 0.00 0.00 0.00 3.82
5702 6899 2.961526 ACTCTTCGTTCACACACACT 57.038 45.000 0.00 0.00 0.00 3.55
5703 6900 3.247006 ACTCTTCGTTCACACACACTT 57.753 42.857 0.00 0.00 0.00 3.16
5704 6901 4.380841 ACTCTTCGTTCACACACACTTA 57.619 40.909 0.00 0.00 0.00 2.24
5705 6902 4.110482 ACTCTTCGTTCACACACACTTAC 58.890 43.478 0.00 0.00 0.00 2.34
5706 6903 4.142227 ACTCTTCGTTCACACACACTTACT 60.142 41.667 0.00 0.00 0.00 2.24
5707 6904 4.751060 TCTTCGTTCACACACACTTACTT 58.249 39.130 0.00 0.00 0.00 2.24
5708 6905 5.172934 TCTTCGTTCACACACACTTACTTT 58.827 37.500 0.00 0.00 0.00 2.66
5709 6906 5.640357 TCTTCGTTCACACACACTTACTTTT 59.360 36.000 0.00 0.00 0.00 2.27
5710 6907 5.211266 TCGTTCACACACACTTACTTTTG 57.789 39.130 0.00 0.00 0.00 2.44
5711 6908 4.930405 TCGTTCACACACACTTACTTTTGA 59.070 37.500 0.00 0.00 0.00 2.69
5712 6909 5.408909 TCGTTCACACACACTTACTTTTGAA 59.591 36.000 0.00 0.00 0.00 2.69
5713 6910 6.073167 TCGTTCACACACACTTACTTTTGAAA 60.073 34.615 0.00 0.00 0.00 2.69
5714 6911 6.579292 CGTTCACACACACTTACTTTTGAAAA 59.421 34.615 0.00 0.00 0.00 2.29
5715 6912 7.272515 CGTTCACACACACTTACTTTTGAAAAT 59.727 33.333 0.00 0.00 0.00 1.82
5716 6913 9.562583 GTTCACACACACTTACTTTTGAAAATA 57.437 29.630 0.00 0.00 0.00 1.40
5880 7127 7.364522 GTATACGTATACGAATACAGGTCCA 57.635 40.000 30.77 0.00 43.02 4.02
5881 7128 7.978982 GTATACGTATACGAATACAGGTCCAT 58.021 38.462 30.77 6.83 43.02 3.41
5882 7129 5.779529 ACGTATACGAATACAGGTCCATT 57.220 39.130 30.77 0.74 43.02 3.16
5883 7130 6.152932 ACGTATACGAATACAGGTCCATTT 57.847 37.500 30.77 0.06 43.02 2.32
5884 7131 7.275888 ACGTATACGAATACAGGTCCATTTA 57.724 36.000 30.77 0.00 43.02 1.40
5885 7132 7.141363 ACGTATACGAATACAGGTCCATTTAC 58.859 38.462 30.77 0.00 43.02 2.01
5886 7133 7.013655 ACGTATACGAATACAGGTCCATTTACT 59.986 37.037 30.77 0.00 43.02 2.24
5889 7136 4.141779 ACGAATACAGGTCCATTTACTCCC 60.142 45.833 0.00 0.00 0.00 4.30
5890 7137 4.377897 GAATACAGGTCCATTTACTCCCG 58.622 47.826 0.00 0.00 0.00 5.14
5891 7138 1.652947 ACAGGTCCATTTACTCCCGT 58.347 50.000 0.00 0.00 0.00 5.28
5892 7139 1.553704 ACAGGTCCATTTACTCCCGTC 59.446 52.381 0.00 0.00 0.00 4.79
5894 7141 0.808847 GGTCCATTTACTCCCGTCGC 60.809 60.000 0.00 0.00 0.00 5.19
5895 7142 1.140161 TCCATTTACTCCCGTCGCG 59.860 57.895 0.00 0.00 0.00 5.87
5896 7143 1.153706 CCATTTACTCCCGTCGCGT 60.154 57.895 5.77 0.00 0.00 6.01
5897 7144 1.143969 CCATTTACTCCCGTCGCGTC 61.144 60.000 5.77 0.00 0.00 5.19
5898 7145 0.179145 CATTTACTCCCGTCGCGTCT 60.179 55.000 5.77 0.00 0.00 4.18
5899 7146 0.179145 ATTTACTCCCGTCGCGTCTG 60.179 55.000 5.77 0.00 0.00 3.51
5900 7147 2.203972 TTTACTCCCGTCGCGTCTGG 62.204 60.000 5.77 6.75 0.00 3.86
5902 7149 4.477975 CTCCCGTCGCGTCTGGAC 62.478 72.222 12.02 0.00 0.00 4.02
6152 8787 2.265424 CCGGCCTGCAAAAATGGG 59.735 61.111 0.00 0.00 0.00 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 5.844301 AATGAATCAACATTCCGCAAAAC 57.156 34.783 0.00 0.00 38.14 2.43
77 79 2.351418 CACATCGAGCGCCTGAAATTTA 59.649 45.455 2.29 0.00 0.00 1.40
96 98 4.607955 GACCTTTGCTAAAAACAGGACAC 58.392 43.478 0.00 0.00 0.00 3.67
108 110 1.681538 TTTTGGCACGACCTTTGCTA 58.318 45.000 0.00 0.00 40.07 3.49
119 121 5.416862 AAATTCACGGAAAATTTTGGCAC 57.583 34.783 8.47 0.00 33.62 5.01
124 126 6.261826 TCATGCCAAAATTCACGGAAAATTTT 59.738 30.769 2.28 2.28 43.54 1.82
134 136 3.184986 GCACAAGTCATGCCAAAATTCAC 59.815 43.478 0.00 0.00 37.08 3.18
169 171 2.847327 AATCAGGGGCACTCGATATG 57.153 50.000 0.00 0.00 0.00 1.78
172 174 0.181350 GGAAATCAGGGGCACTCGAT 59.819 55.000 0.00 0.00 0.00 3.59
183 185 4.535526 AATTCCGGTTTTGGGAAATCAG 57.464 40.909 0.00 0.00 46.01 2.90
190 192 3.004524 TGTCGTTTAATTCCGGTTTTGGG 59.995 43.478 0.00 0.00 0.00 4.12
193 195 5.463286 GGAATGTCGTTTAATTCCGGTTTT 58.537 37.500 0.00 0.00 41.74 2.43
194 196 5.050644 GGAATGTCGTTTAATTCCGGTTT 57.949 39.130 0.00 0.00 41.74 3.27
208 211 3.557577 TGATGTTTTGCTGGAATGTCG 57.442 42.857 0.00 0.00 0.00 4.35
213 216 4.998671 TGAGTTTGATGTTTTGCTGGAA 57.001 36.364 0.00 0.00 0.00 3.53
217 220 7.458409 AGATACATGAGTTTGATGTTTTGCT 57.542 32.000 0.00 0.00 35.62 3.91
313 316 3.728718 GGTTTGCGTCATTGTGTTACTTG 59.271 43.478 0.00 0.00 0.00 3.16
368 371 0.597637 CGTCAGTTGTGTCTCGCCTT 60.598 55.000 0.00 0.00 0.00 4.35
373 376 1.949133 TGCGCGTCAGTTGTGTCTC 60.949 57.895 8.43 0.00 0.00 3.36
410 413 0.459585 TTTTAGCCGAGCCGTGCTAG 60.460 55.000 13.14 0.00 39.88 3.42
415 418 1.082117 CGTGATTTTAGCCGAGCCGT 61.082 55.000 0.00 0.00 0.00 5.68
460 463 3.692406 ACGCGTGTTCCTCCTCCC 61.692 66.667 12.93 0.00 0.00 4.30
561 564 4.818005 AGTAAAAAGTTTAGTCCCACCACG 59.182 41.667 0.00 0.00 0.00 4.94
584 587 4.199002 TCTTAGAGTCCCATATGGCTGA 57.801 45.455 16.97 6.42 0.00 4.26
623 946 9.131791 AGCCCGTTTAATATTTCAGAATATTGT 57.868 29.630 12.34 0.00 44.30 2.71
651 974 7.596749 AAGGATATGTCGAAATTATTAGGCG 57.403 36.000 0.00 0.00 0.00 5.52
735 1058 9.859427 CTGAAAATACATGAGCCTAAAATTCAA 57.141 29.630 0.00 0.00 0.00 2.69
736 1059 9.241919 TCTGAAAATACATGAGCCTAAAATTCA 57.758 29.630 0.00 0.00 0.00 2.57
786 1109 3.708563 TGTTTTCTTCCGCTCAAAAGG 57.291 42.857 0.00 0.00 0.00 3.11
787 1110 5.556947 GCAATTGTTTTCTTCCGCTCAAAAG 60.557 40.000 7.40 0.00 0.00 2.27
1064 1402 3.461773 CCTCGGACGTCCATGGCT 61.462 66.667 32.80 0.00 35.14 4.75
1065 1403 3.432051 CTCCTCGGACGTCCATGGC 62.432 68.421 32.80 7.05 35.14 4.40
1240 1587 5.652744 ACTCACACAATAACAGTTTCGTC 57.347 39.130 0.00 0.00 0.00 4.20
1243 1590 7.011482 ACTCTGAACTCACACAATAACAGTTTC 59.989 37.037 0.00 0.00 0.00 2.78
1244 1591 6.823689 ACTCTGAACTCACACAATAACAGTTT 59.176 34.615 0.00 0.00 0.00 2.66
1245 1592 6.349300 ACTCTGAACTCACACAATAACAGTT 58.651 36.000 0.00 0.00 0.00 3.16
1246 1593 5.918608 ACTCTGAACTCACACAATAACAGT 58.081 37.500 0.00 0.00 0.00 3.55
1247 1594 6.258727 ACAACTCTGAACTCACACAATAACAG 59.741 38.462 0.00 0.00 0.00 3.16
1248 1595 6.112734 ACAACTCTGAACTCACACAATAACA 58.887 36.000 0.00 0.00 0.00 2.41
1249 1596 6.604735 ACAACTCTGAACTCACACAATAAC 57.395 37.500 0.00 0.00 0.00 1.89
1250 1597 7.722363 TCTACAACTCTGAACTCACACAATAA 58.278 34.615 0.00 0.00 0.00 1.40
1251 1598 7.284919 TCTACAACTCTGAACTCACACAATA 57.715 36.000 0.00 0.00 0.00 1.90
1252 1599 6.161855 TCTACAACTCTGAACTCACACAAT 57.838 37.500 0.00 0.00 0.00 2.71
1253 1600 5.592104 TCTACAACTCTGAACTCACACAA 57.408 39.130 0.00 0.00 0.00 3.33
1254 1601 5.301805 TGATCTACAACTCTGAACTCACACA 59.698 40.000 0.00 0.00 0.00 3.72
1255 1602 5.773575 TGATCTACAACTCTGAACTCACAC 58.226 41.667 0.00 0.00 0.00 3.82
1256 1603 6.405278 TTGATCTACAACTCTGAACTCACA 57.595 37.500 0.00 0.00 33.18 3.58
1257 1604 5.866633 CCTTGATCTACAACTCTGAACTCAC 59.133 44.000 0.00 0.00 34.56 3.51
1268 1615 2.789409 AGGCACCCTTGATCTACAAC 57.211 50.000 0.00 0.00 34.56 3.32
1299 1646 6.256321 GCATTTCACACTCAGTTTGACATTTT 59.744 34.615 0.00 0.00 0.00 1.82
1301 1648 5.163530 TGCATTTCACACTCAGTTTGACATT 60.164 36.000 0.00 0.00 0.00 2.71
1303 1650 3.693578 TGCATTTCACACTCAGTTTGACA 59.306 39.130 0.00 0.00 0.00 3.58
1304 1651 4.291540 TGCATTTCACACTCAGTTTGAC 57.708 40.909 0.00 0.00 0.00 3.18
1305 1652 4.579753 TCATGCATTTCACACTCAGTTTGA 59.420 37.500 0.00 0.00 0.00 2.69
1413 1769 1.996070 GAGGGGGTTATGCAGGGACC 61.996 65.000 7.25 7.25 0.00 4.46
1419 1775 0.983905 TAAGGCGAGGGGGTTATGCA 60.984 55.000 0.00 0.00 0.00 3.96
1443 1799 4.439974 GGCATAGCCGAATTGAATTTCACA 60.440 41.667 0.00 0.00 39.62 3.58
1488 1844 1.637553 AGCACATCATTTCTGTCCCCT 59.362 47.619 0.00 0.00 0.00 4.79
1510 1866 5.690464 ATCATCTGGCAGTAGAAAGAGTT 57.310 39.130 15.27 0.00 0.00 3.01
1512 1868 5.218885 CGTATCATCTGGCAGTAGAAAGAG 58.781 45.833 15.27 4.15 0.00 2.85
1520 1876 2.028658 CCATAGCGTATCATCTGGCAGT 60.029 50.000 15.27 0.00 0.00 4.40
1592 1948 1.361668 CGACCAATTGCCTCACCTCG 61.362 60.000 0.00 0.00 0.00 4.63
1785 2150 7.172342 AGTATCAATAAAGCAGTGTAAACCCA 58.828 34.615 0.00 0.00 0.00 4.51
1810 2183 8.160765 TGGTATACCTTCAGAACAAGAATCAAA 58.839 33.333 22.41 0.00 36.82 2.69
1878 2251 7.201652 GCTCTCTTTTGTAAGAATCATACACCC 60.202 40.741 0.00 0.00 39.80 4.61
1940 2313 0.907704 TACTGCACTCCCCCGATGTT 60.908 55.000 0.00 0.00 0.00 2.71
1941 2314 1.305802 TACTGCACTCCCCCGATGT 60.306 57.895 0.00 0.00 0.00 3.06
2152 2525 1.009675 GCCAGTTGCATTATCGCCG 60.010 57.895 0.00 0.00 40.77 6.46
2175 2548 1.352083 TCCCAGAGCAGCTGTAAACT 58.648 50.000 16.64 3.06 43.33 2.66
2194 2567 1.076485 GCTCCCACCCATCTGCAAT 60.076 57.895 0.00 0.00 0.00 3.56
2290 2663 1.477553 GCCCATCAAAAGAGGATGCA 58.522 50.000 0.00 0.00 40.60 3.96
2299 2672 4.020662 GGATTAACAAGTGGCCCATCAAAA 60.021 41.667 0.00 0.00 0.00 2.44
2302 2675 2.311542 AGGATTAACAAGTGGCCCATCA 59.688 45.455 0.00 0.00 0.00 3.07
2365 2738 4.757149 GTGAAGTTCCTGCTGTTATTCAGT 59.243 41.667 0.00 0.00 45.23 3.41
2534 2907 0.106708 TTCACCCTATCCGCTGATGC 59.893 55.000 0.20 0.00 32.18 3.91
2542 2915 8.098912 TCACTACTAAAACTTTTCACCCTATCC 58.901 37.037 0.00 0.00 0.00 2.59
2554 2927 7.741554 AGGATCCTCATCACTACTAAAACTT 57.258 36.000 9.02 0.00 0.00 2.66
2565 2938 3.037549 ACCAGAGAAGGATCCTCATCAC 58.962 50.000 16.52 8.74 33.25 3.06
2711 3084 8.413229 TGAGGCAATAGAAAAATAATAAGGCAC 58.587 33.333 0.00 0.00 0.00 5.01
2712 3085 8.532186 TGAGGCAATAGAAAAATAATAAGGCA 57.468 30.769 0.00 0.00 0.00 4.75
2713 3086 9.816354 TTTGAGGCAATAGAAAAATAATAAGGC 57.184 29.630 0.00 0.00 0.00 4.35
2729 3107 4.320608 ACAAATGAACGTTTGAGGCAAT 57.679 36.364 21.25 0.86 40.64 3.56
2738 3116 9.233232 GAAAACTAAGATCAACAAATGAACGTT 57.767 29.630 0.00 0.00 42.54 3.99
2771 3149 7.500892 TGACTTAGCATAGAACCAACTGAAAAA 59.499 33.333 0.00 0.00 0.00 1.94
2796 3174 9.926751 CTGCAATGACTACATTAAATACTTCTG 57.073 33.333 0.00 0.00 43.76 3.02
2806 3184 5.685520 TGTACCCTGCAATGACTACATTA 57.314 39.130 0.00 0.00 43.76 1.90
2911 3447 7.916450 GCTAGAGTTTGTGTACTACAGGAATAG 59.084 40.741 0.00 0.40 41.10 1.73
2914 3450 5.773680 AGCTAGAGTTTGTGTACTACAGGAA 59.226 40.000 0.00 0.00 41.10 3.36
2916 3452 5.646577 AGCTAGAGTTTGTGTACTACAGG 57.353 43.478 0.00 0.00 41.10 4.00
2924 3460 9.947669 CGTACTAATTATAGCTAGAGTTTGTGT 57.052 33.333 16.69 9.80 31.96 3.72
2925 3461 9.395707 CCGTACTAATTATAGCTAGAGTTTGTG 57.604 37.037 16.69 5.31 31.96 3.33
2926 3462 8.081025 GCCGTACTAATTATAGCTAGAGTTTGT 58.919 37.037 13.31 13.31 31.96 2.83
2927 3463 8.298140 AGCCGTACTAATTATAGCTAGAGTTTG 58.702 37.037 1.21 2.83 31.96 2.93
2928 3464 8.406730 AGCCGTACTAATTATAGCTAGAGTTT 57.593 34.615 1.21 0.00 31.96 2.66
2929 3465 7.999450 AGCCGTACTAATTATAGCTAGAGTT 57.001 36.000 0.00 0.00 31.96 3.01
2930 3466 7.664731 TCAAGCCGTACTAATTATAGCTAGAGT 59.335 37.037 0.00 0.43 31.96 3.24
2946 3482 7.569639 TCCATATATAGAGATCAAGCCGTAC 57.430 40.000 0.00 0.00 0.00 3.67
2973 3509 6.067217 ACCAGCCTGTTACTTCAGATATTT 57.933 37.500 0.00 0.00 37.61 1.40
2974 3510 5.700402 ACCAGCCTGTTACTTCAGATATT 57.300 39.130 0.00 0.00 37.61 1.28
2975 3511 5.700402 AACCAGCCTGTTACTTCAGATAT 57.300 39.130 0.00 0.00 37.61 1.63
2977 3513 4.833390 GTAACCAGCCTGTTACTTCAGAT 58.167 43.478 15.34 0.00 44.54 2.90
2978 3514 4.267349 GTAACCAGCCTGTTACTTCAGA 57.733 45.455 15.34 0.00 44.54 3.27
2989 3557 1.729586 TGGAAGTCAGTAACCAGCCT 58.270 50.000 0.00 0.00 0.00 4.58
2990 3558 2.427506 CTTGGAAGTCAGTAACCAGCC 58.572 52.381 0.00 0.00 33.85 4.85
2999 3567 1.000955 ACAGTACCGCTTGGAAGTCAG 59.999 52.381 0.00 0.00 36.26 3.51
3006 3574 9.485206 AATTATAAATACTACAGTACCGCTTGG 57.515 33.333 0.00 0.00 39.35 3.61
3033 3601 1.888512 ACAGGCCAAAACAGCATACAG 59.111 47.619 5.01 0.00 0.00 2.74
3035 3603 3.385193 AAACAGGCCAAAACAGCATAC 57.615 42.857 5.01 0.00 0.00 2.39
3059 3627 4.367039 GGGGGTGCTAGCTAAATCAATA 57.633 45.455 17.23 0.00 0.00 1.90
3077 3645 5.130477 ACACACAGTAACTTATATGAGGGGG 59.870 44.000 0.00 0.00 0.00 5.40
3124 3694 9.906660 TCAAATAAAAACAGTGTCCATATGTTC 57.093 29.630 0.00 0.00 36.18 3.18
3161 3731 4.456911 TGAACTTGATCAGTCCAGAATTGC 59.543 41.667 0.00 0.00 32.94 3.56
3167 3737 7.496529 TTAAAGTTGAACTTGATCAGTCCAG 57.503 36.000 11.83 0.00 38.66 3.86
3168 3738 8.463930 AATTAAAGTTGAACTTGATCAGTCCA 57.536 30.769 11.83 0.00 38.66 4.02
3174 3744 9.196552 CCCTTGAAATTAAAGTTGAACTTGATC 57.803 33.333 11.83 6.61 38.66 2.92
3175 3745 8.704668 ACCCTTGAAATTAAAGTTGAACTTGAT 58.295 29.630 11.83 6.38 38.66 2.57
3185 3755 9.758651 GTTAATGTTGACCCTTGAAATTAAAGT 57.241 29.630 0.00 0.00 0.00 2.66
3212 3782 6.490040 AGCAGGTAAAGTGTTCAACATATTGT 59.510 34.615 0.00 0.00 37.11 2.71
3231 3801 2.760092 TGCACTGAAAAGAAAAGCAGGT 59.240 40.909 0.00 0.00 32.82 4.00
3315 3885 6.855763 TCAAATAATGGTTCTTGGCATTCT 57.144 33.333 0.00 0.00 0.00 2.40
3345 3915 0.725117 CGTTAACCGCAAGTGATCCC 59.275 55.000 0.00 0.00 0.00 3.85
3368 3938 5.514279 CCAGACTTACTTTTGCTGTTTCAG 58.486 41.667 0.00 0.00 34.12 3.02
3370 3940 4.036852 AGCCAGACTTACTTTTGCTGTTTC 59.963 41.667 0.00 0.00 0.00 2.78
3575 4233 4.282068 CACTGATTGTTTGAACGGAACAG 58.718 43.478 0.00 0.00 38.17 3.16
3646 4305 4.457949 CACGGTAAGTAAGCCAAAGGAAAT 59.542 41.667 0.00 0.00 0.00 2.17
3666 4325 0.532573 ACAGTGACATAGCTCCCACG 59.467 55.000 0.00 0.00 34.93 4.94
3673 4333 0.036010 ACCTGCCACAGTGACATAGC 60.036 55.000 0.62 0.00 0.00 2.97
3680 4340 1.812571 GGTAATTGACCTGCCACAGTG 59.187 52.381 0.00 0.00 45.89 3.66
3750 4410 1.931841 GGATTCTTAAGGAACGCCGAC 59.068 52.381 1.85 0.00 39.96 4.79
3795 4455 2.598394 GTGCAAAGCCAGGCTCCA 60.598 61.111 16.53 9.89 38.25 3.86
4090 4863 2.706339 CCTCCAGGTCCTTCAATCAG 57.294 55.000 0.00 0.00 0.00 2.90
4173 4946 1.128611 CGAGAAACTCACGCTTGCG 59.871 57.895 13.70 13.70 0.00 4.85
4197 4970 3.332919 CCGGATGATTGAGATGTCCATC 58.667 50.000 0.00 0.00 38.09 3.51
4241 5014 3.131396 CGCTTAATTACCTCCGCAGATT 58.869 45.455 0.00 0.00 0.00 2.40
4290 5063 8.710239 ACATACATGTGTAATTACTCCATGGTA 58.290 33.333 30.60 24.31 40.03 3.25
4304 5077 6.934056 ACCGGTTAAAGTACATACATGTGTA 58.066 36.000 9.11 0.00 41.89 2.90
4320 5093 4.010667 AGCTACACAATTGACCGGTTAA 57.989 40.909 14.84 14.84 0.00 2.01
4343 5116 7.934457 ACCAAATCAATATCAGATTTTCCGAG 58.066 34.615 11.39 3.63 42.17 4.63
4345 5118 8.190122 TCAACCAAATCAATATCAGATTTTCCG 58.810 33.333 11.39 6.82 42.17 4.30
4352 5125 9.334947 GATTCTCTCAACCAAATCAATATCAGA 57.665 33.333 0.00 0.00 0.00 3.27
4432 5205 1.490490 TGAGCACCTACCCATTCCATC 59.510 52.381 0.00 0.00 0.00 3.51
4438 5211 3.325135 GCTTAGTATGAGCACCTACCCAT 59.675 47.826 0.00 0.00 39.89 4.00
4472 5250 4.293415 ACACAGAGTACGTAAAAACGGAG 58.707 43.478 0.00 0.00 37.45 4.63
4475 5253 5.379757 ACAACACAGAGTACGTAAAAACG 57.620 39.130 0.00 0.00 39.31 3.60
4476 5254 9.706846 ATTTTACAACACAGAGTACGTAAAAAC 57.293 29.630 15.85 0.00 43.66 2.43
4481 5259 8.821147 AATCATTTTACAACACAGAGTACGTA 57.179 30.769 0.00 0.00 0.00 3.57
4484 5262 9.169468 CACAAATCATTTTACAACACAGAGTAC 57.831 33.333 0.00 0.00 0.00 2.73
4488 5266 7.766283 TGACACAAATCATTTTACAACACAGA 58.234 30.769 0.00 0.00 0.00 3.41
4508 5286 4.096231 TGCCTGCATTAACATGTATGACAC 59.904 41.667 11.95 0.37 32.28 3.67
4657 5709 5.683876 ATGAGCTGAGCTAACCTCTTTTA 57.316 39.130 7.08 0.00 39.88 1.52
4674 5726 5.641209 AGTCAGATGTGTTCAACTTATGAGC 59.359 40.000 0.00 0.00 39.77 4.26
4683 5735 8.585018 TGAGAAATAGTAGTCAGATGTGTTCAA 58.415 33.333 0.00 0.00 0.00 2.69
4686 5738 9.950496 AATTGAGAAATAGTAGTCAGATGTGTT 57.050 29.630 0.00 0.00 0.00 3.32
4722 5784 5.196695 CGGGGGACTAACTTAGTACTACTT 58.803 45.833 10.48 0.00 39.66 2.24
4723 5785 4.228438 ACGGGGGACTAACTTAGTACTACT 59.772 45.833 10.48 0.00 39.66 2.57
4724 5786 4.527944 ACGGGGGACTAACTTAGTACTAC 58.472 47.826 10.48 4.96 39.66 2.73
4725 5787 4.475016 AGACGGGGGACTAACTTAGTACTA 59.525 45.833 10.48 0.00 39.66 1.82
4726 5788 3.268072 AGACGGGGGACTAACTTAGTACT 59.732 47.826 10.48 0.00 39.66 2.73
4727 5789 3.625853 AGACGGGGGACTAACTTAGTAC 58.374 50.000 2.78 2.78 39.59 2.73
4729 5791 2.915657 AGACGGGGGACTAACTTAGT 57.084 50.000 0.76 0.76 42.86 2.24
4730 5792 3.895998 AGTAGACGGGGGACTAACTTAG 58.104 50.000 0.00 0.00 0.00 2.18
4732 5794 2.830321 CAAGTAGACGGGGGACTAACTT 59.170 50.000 0.00 0.00 0.00 2.66
4733 5795 2.042162 TCAAGTAGACGGGGGACTAACT 59.958 50.000 0.00 0.00 0.00 2.24
4734 5796 2.165234 GTCAAGTAGACGGGGGACTAAC 59.835 54.545 0.00 0.00 37.53 2.34
4735 5797 2.450476 GTCAAGTAGACGGGGGACTAA 58.550 52.381 0.00 0.00 37.53 2.24
4736 5798 2.134789 GTCAAGTAGACGGGGGACTA 57.865 55.000 0.00 0.00 37.53 2.59
4737 5799 2.973148 GTCAAGTAGACGGGGGACT 58.027 57.895 0.00 0.00 37.53 3.85
4746 5808 3.055819 GCCATCTTCACCTGTCAAGTAGA 60.056 47.826 0.00 0.00 0.00 2.59
4747 5809 3.265791 GCCATCTTCACCTGTCAAGTAG 58.734 50.000 0.00 0.00 0.00 2.57
4748 5810 2.027192 GGCCATCTTCACCTGTCAAGTA 60.027 50.000 0.00 0.00 0.00 2.24
4749 5811 1.271597 GGCCATCTTCACCTGTCAAGT 60.272 52.381 0.00 0.00 0.00 3.16
4798 5860 2.357517 AGAAGACGCGCCCACAAG 60.358 61.111 5.73 0.00 0.00 3.16
4837 5899 3.879892 GGGTGATCAGCTTTAGAACCATC 59.120 47.826 23.24 0.00 0.00 3.51
4844 5906 3.274288 GAACCAGGGTGATCAGCTTTAG 58.726 50.000 23.24 12.53 0.00 1.85
4859 5921 1.279271 CTTACCACCAGGAGGAACCAG 59.721 57.143 10.44 0.00 42.04 4.00
4870 5932 3.935818 TCAAACTCAACCTTACCACCA 57.064 42.857 0.00 0.00 0.00 4.17
4900 5962 3.871594 GTGCTGTCCACAGATTGGTATAC 59.128 47.826 11.04 0.00 46.97 1.47
4958 6020 1.228154 AAGGCGTTGGGAGGTTGAC 60.228 57.895 0.00 0.00 0.00 3.18
4961 6023 2.597510 GCAAGGCGTTGGGAGGTT 60.598 61.111 19.88 0.00 33.87 3.50
4976 6038 4.060139 GATCAGAATCAGATGCCATGGCA 61.060 47.826 40.04 40.04 42.46 4.92
4977 6039 1.977056 TCAGAATCAGATGCCATGGC 58.023 50.000 30.54 30.54 42.35 4.40
4991 6053 6.434652 AGTTTCTAGAAAGACTCGGATCAGAA 59.565 38.462 18.22 0.00 0.00 3.02
4995 6057 5.125739 TCCAGTTTCTAGAAAGACTCGGATC 59.874 44.000 18.22 3.62 0.00 3.36
4996 6058 5.017490 TCCAGTTTCTAGAAAGACTCGGAT 58.983 41.667 18.22 0.00 0.00 4.18
4997 6059 4.404640 TCCAGTTTCTAGAAAGACTCGGA 58.595 43.478 18.22 17.09 0.00 4.55
4998 6060 4.459685 TCTCCAGTTTCTAGAAAGACTCGG 59.540 45.833 18.22 15.46 0.00 4.63
4999 6061 5.630661 TCTCCAGTTTCTAGAAAGACTCG 57.369 43.478 18.22 6.85 0.00 4.18
5000 6062 5.867174 GCTTCTCCAGTTTCTAGAAAGACTC 59.133 44.000 18.22 6.79 0.00 3.36
5001 6063 5.305644 TGCTTCTCCAGTTTCTAGAAAGACT 59.694 40.000 18.22 10.82 0.00 3.24
5002 6064 5.542779 TGCTTCTCCAGTTTCTAGAAAGAC 58.457 41.667 18.22 8.59 0.00 3.01
5003 6065 5.808366 TGCTTCTCCAGTTTCTAGAAAGA 57.192 39.130 18.22 11.12 0.00 2.52
5004 6066 7.390162 AGAAATGCTTCTCCAGTTTCTAGAAAG 59.610 37.037 18.22 7.73 37.31 2.62
5005 6067 7.173907 CAGAAATGCTTCTCCAGTTTCTAGAAA 59.826 37.037 13.99 13.99 40.05 2.52
5006 6068 6.652481 CAGAAATGCTTCTCCAGTTTCTAGAA 59.348 38.462 0.00 0.00 40.05 2.10
5007 6069 6.014242 TCAGAAATGCTTCTCCAGTTTCTAGA 60.014 38.462 0.00 0.00 40.05 2.43
5008 6070 6.169094 TCAGAAATGCTTCTCCAGTTTCTAG 58.831 40.000 0.00 0.00 40.05 2.43
5009 6071 6.114187 TCAGAAATGCTTCTCCAGTTTCTA 57.886 37.500 0.00 0.00 40.05 2.10
5034 6096 1.942657 TGTCAGAACAGAAAGTGCAGC 59.057 47.619 0.00 0.00 0.00 5.25
5129 6191 1.746615 CCATGGGCCACTTGTCTCG 60.747 63.158 9.28 0.00 0.00 4.04
5152 6214 4.500265 GCCTTCAGCCCTTTGACA 57.500 55.556 0.00 0.00 34.35 3.58
5215 6277 1.945394 GACCATAGCAGTGCTTCATGG 59.055 52.381 32.14 32.14 45.30 3.66
5225 6287 6.603237 TTGATTATTTGACGACCATAGCAG 57.397 37.500 0.00 0.00 0.00 4.24
5243 6305 5.163513 CAGCCTTGCGACTAAATTTTGATT 58.836 37.500 6.63 0.00 0.00 2.57
5247 6309 2.946564 GCAGCCTTGCGACTAAATTTT 58.053 42.857 0.00 0.00 41.13 1.82
5297 6359 3.191669 TGTAAACGATACCATGGCGAAG 58.808 45.455 13.04 3.85 0.00 3.79
5302 6364 5.182380 ACCAAACTTGTAAACGATACCATGG 59.818 40.000 11.19 11.19 0.00 3.66
5304 6366 6.093082 GCTACCAAACTTGTAAACGATACCAT 59.907 38.462 0.00 0.00 0.00 3.55
5311 6373 2.801679 TCCGCTACCAAACTTGTAAACG 59.198 45.455 0.00 0.00 0.00 3.60
5319 6381 0.036765 TCGCAATCCGCTACCAAACT 60.037 50.000 0.00 0.00 39.08 2.66
5347 6409 1.064906 CATCTGGAGAGTGGCCATGTT 60.065 52.381 9.72 0.00 34.33 2.71
5361 6423 0.530650 CGGACGGGACATTCATCTGG 60.531 60.000 0.00 0.00 0.00 3.86
5364 6426 1.429148 GCACGGACGGGACATTCATC 61.429 60.000 0.00 0.00 0.00 2.92
5369 6431 0.608035 AAAATGCACGGACGGGACAT 60.608 50.000 0.00 0.00 0.00 3.06
5378 6440 9.128107 GATATCCAATACAAATAAAATGCACGG 57.872 33.333 0.00 0.00 0.00 4.94
5381 6443 9.695526 GCAGATATCCAATACAAATAAAATGCA 57.304 29.630 0.00 0.00 0.00 3.96
5382 6444 9.918630 AGCAGATATCCAATACAAATAAAATGC 57.081 29.630 0.00 0.00 0.00 3.56
5389 6451 7.389884 CAGCAGTAGCAGATATCCAATACAAAT 59.610 37.037 0.00 0.00 45.49 2.32
5390 6452 6.707608 CAGCAGTAGCAGATATCCAATACAAA 59.292 38.462 0.00 0.00 45.49 2.83
5391 6453 6.226052 CAGCAGTAGCAGATATCCAATACAA 58.774 40.000 0.00 0.00 45.49 2.41
5392 6454 5.787380 CAGCAGTAGCAGATATCCAATACA 58.213 41.667 0.00 0.00 45.49 2.29
5393 6455 4.629200 GCAGCAGTAGCAGATATCCAATAC 59.371 45.833 0.00 0.30 45.49 1.89
5394 6456 4.529769 AGCAGCAGTAGCAGATATCCAATA 59.470 41.667 0.00 0.00 45.49 1.90
5395 6457 3.327172 AGCAGCAGTAGCAGATATCCAAT 59.673 43.478 0.00 0.00 45.49 3.16
5396 6458 2.702478 AGCAGCAGTAGCAGATATCCAA 59.298 45.455 0.00 0.00 45.49 3.53
5397 6459 2.036862 CAGCAGCAGTAGCAGATATCCA 59.963 50.000 0.00 0.00 45.49 3.41
5398 6460 2.686235 CAGCAGCAGTAGCAGATATCC 58.314 52.381 0.00 0.00 45.49 2.59
5399 6461 2.067766 GCAGCAGCAGTAGCAGATATC 58.932 52.381 0.00 0.00 45.49 1.63
5400 6462 1.693062 AGCAGCAGCAGTAGCAGATAT 59.307 47.619 3.17 0.00 45.49 1.63
5401 6463 1.068281 GAGCAGCAGCAGTAGCAGATA 59.932 52.381 3.17 0.00 45.49 1.98
5404 6466 1.814586 GGAGCAGCAGCAGTAGCAG 60.815 63.158 3.17 0.00 45.49 4.24
5405 6467 1.834856 AAGGAGCAGCAGCAGTAGCA 61.835 55.000 3.17 0.00 45.49 3.49
5407 6469 0.536260 AGAAGGAGCAGCAGCAGTAG 59.464 55.000 3.17 0.00 45.49 2.57
5408 6470 0.979665 AAGAAGGAGCAGCAGCAGTA 59.020 50.000 3.17 0.00 45.49 2.74
5410 6472 0.321387 TGAAGAAGGAGCAGCAGCAG 60.321 55.000 3.17 0.00 45.49 4.24
5441 6632 3.876309 ACCTTGCTTCCTGGAAAAGTA 57.124 42.857 10.86 0.00 0.00 2.24
5443 6634 4.398319 TCTAACCTTGCTTCCTGGAAAAG 58.602 43.478 10.86 11.58 0.00 2.27
5445 6636 4.447138 TTCTAACCTTGCTTCCTGGAAA 57.553 40.909 10.86 0.00 0.00 3.13
5448 6639 5.501156 ACTAATTCTAACCTTGCTTCCTGG 58.499 41.667 0.00 0.00 0.00 4.45
5451 6642 7.390718 TCTTCAACTAATTCTAACCTTGCTTCC 59.609 37.037 0.00 0.00 0.00 3.46
5452 6643 8.324163 TCTTCAACTAATTCTAACCTTGCTTC 57.676 34.615 0.00 0.00 0.00 3.86
5453 6644 8.870075 ATCTTCAACTAATTCTAACCTTGCTT 57.130 30.769 0.00 0.00 0.00 3.91
5491 6682 9.905713 ATTACAACTCTTTGTGGTGTGATATAT 57.094 29.630 0.21 0.00 45.91 0.86
5499 6690 6.618287 TTCTCATTACAACTCTTTGTGGTG 57.382 37.500 0.21 0.23 45.91 4.17
5511 6702 8.281531 ACTCCCCATTTCATATTCTCATTACAA 58.718 33.333 0.00 0.00 0.00 2.41
5523 6714 8.966868 GTCATTTAAGAAACTCCCCATTTCATA 58.033 33.333 0.78 0.00 38.32 2.15
5526 6717 7.468141 AGTCATTTAAGAAACTCCCCATTTC 57.532 36.000 0.00 0.00 36.49 2.17
5605 6802 7.725844 AGTTGGGAAAACTTGACTCTCAAATAT 59.274 33.333 0.00 0.00 35.73 1.28
5626 6823 1.200020 GATTTGGGTGCTTCGAGTTGG 59.800 52.381 0.00 0.00 0.00 3.77
5632 6829 1.200020 GACTTGGATTTGGGTGCTTCG 59.800 52.381 0.00 0.00 0.00 3.79
5647 6844 2.224769 TGTTAGCCTTCCCCTTGACTTG 60.225 50.000 0.00 0.00 0.00 3.16
5648 6845 2.062636 TGTTAGCCTTCCCCTTGACTT 58.937 47.619 0.00 0.00 0.00 3.01
5658 6855 4.635765 TGCATGTAGATGTTGTTAGCCTTC 59.364 41.667 1.37 0.00 31.50 3.46
5659 6856 4.588899 TGCATGTAGATGTTGTTAGCCTT 58.411 39.130 1.37 0.00 31.50 4.35
5660 6857 4.220693 TGCATGTAGATGTTGTTAGCCT 57.779 40.909 1.37 0.00 31.50 4.58
5661 6858 5.760253 AGTATGCATGTAGATGTTGTTAGCC 59.240 40.000 10.16 0.00 31.50 3.93
5662 6859 6.703607 AGAGTATGCATGTAGATGTTGTTAGC 59.296 38.462 10.16 0.00 31.50 3.09
5663 6860 8.654230 AAGAGTATGCATGTAGATGTTGTTAG 57.346 34.615 10.16 0.00 31.50 2.34
5664 6861 7.435192 CGAAGAGTATGCATGTAGATGTTGTTA 59.565 37.037 10.16 0.00 31.50 2.41
5665 6862 6.256539 CGAAGAGTATGCATGTAGATGTTGTT 59.743 38.462 10.16 0.00 31.50 2.83
5666 6863 5.750547 CGAAGAGTATGCATGTAGATGTTGT 59.249 40.000 10.16 0.00 31.50 3.32
5667 6864 5.750547 ACGAAGAGTATGCATGTAGATGTTG 59.249 40.000 10.16 0.00 31.50 3.33
5668 6865 5.907207 ACGAAGAGTATGCATGTAGATGTT 58.093 37.500 10.16 0.00 31.50 2.71
5669 6866 5.521906 ACGAAGAGTATGCATGTAGATGT 57.478 39.130 10.16 0.00 31.50 3.06
5670 6867 5.979517 TGAACGAAGAGTATGCATGTAGATG 59.020 40.000 10.16 0.00 0.00 2.90
5671 6868 5.980116 GTGAACGAAGAGTATGCATGTAGAT 59.020 40.000 10.16 0.00 0.00 1.98
5672 6869 5.105917 TGTGAACGAAGAGTATGCATGTAGA 60.106 40.000 10.16 0.00 0.00 2.59
5673 6870 5.004821 GTGTGAACGAAGAGTATGCATGTAG 59.995 44.000 10.16 0.00 0.00 2.74
5674 6871 4.862574 GTGTGAACGAAGAGTATGCATGTA 59.137 41.667 10.16 0.00 0.00 2.29
5675 6872 3.679980 GTGTGAACGAAGAGTATGCATGT 59.320 43.478 10.16 0.00 0.00 3.21
5676 6873 3.679502 TGTGTGAACGAAGAGTATGCATG 59.320 43.478 10.16 0.00 0.00 4.06
5677 6874 3.679980 GTGTGTGAACGAAGAGTATGCAT 59.320 43.478 3.79 3.79 0.00 3.96
5678 6875 3.057019 GTGTGTGAACGAAGAGTATGCA 58.943 45.455 0.00 0.00 0.00 3.96
5679 6876 3.057019 TGTGTGTGAACGAAGAGTATGC 58.943 45.455 0.00 0.00 0.00 3.14
5680 6877 4.299155 AGTGTGTGTGAACGAAGAGTATG 58.701 43.478 0.00 0.00 0.00 2.39
5681 6878 4.585955 AGTGTGTGTGAACGAAGAGTAT 57.414 40.909 0.00 0.00 0.00 2.12
5682 6879 4.380841 AAGTGTGTGTGAACGAAGAGTA 57.619 40.909 0.00 0.00 0.00 2.59
5683 6880 2.961526 AGTGTGTGTGAACGAAGAGT 57.038 45.000 0.00 0.00 0.00 3.24
5684 6881 4.360563 AGTAAGTGTGTGTGAACGAAGAG 58.639 43.478 0.00 0.00 0.00 2.85
5685 6882 4.380841 AGTAAGTGTGTGTGAACGAAGA 57.619 40.909 0.00 0.00 0.00 2.87
5686 6883 5.464965 AAAGTAAGTGTGTGTGAACGAAG 57.535 39.130 0.00 0.00 0.00 3.79
5687 6884 5.408909 TCAAAAGTAAGTGTGTGTGAACGAA 59.591 36.000 0.00 0.00 0.00 3.85
5688 6885 4.930405 TCAAAAGTAAGTGTGTGTGAACGA 59.070 37.500 0.00 0.00 0.00 3.85
5689 6886 5.211266 TCAAAAGTAAGTGTGTGTGAACG 57.789 39.130 0.00 0.00 0.00 3.95
5690 6887 7.861176 TTTTCAAAAGTAAGTGTGTGTGAAC 57.139 32.000 0.00 0.00 0.00 3.18
5845 7042 1.807139 TACGTATACGCTCGGGCATA 58.193 50.000 24.64 0.00 44.43 3.14
5885 7132 4.477975 GTCCAGACGCGACGGGAG 62.478 72.222 27.45 8.28 35.10 4.30
5918 7165 2.503061 CGGGGATCCAGCAGACTG 59.497 66.667 15.23 0.00 44.05 3.51
5919 7166 3.474570 GCGGGGATCCAGCAGACT 61.475 66.667 21.96 0.00 34.38 3.24
5921 7168 4.804420 AGGCGGGGATCCAGCAGA 62.804 66.667 26.11 0.00 35.37 4.26
6091 8724 1.480312 CGAGAGAGGGGTGAGATGGAT 60.480 57.143 0.00 0.00 0.00 3.41
6277 8912 2.721167 CGGAGATCCTTCACGGCCA 61.721 63.158 2.24 0.00 0.00 5.36
6327 8962 2.430921 CTCAGCTCGGCGTTCGTT 60.431 61.111 6.85 0.00 40.32 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.