Multiple sequence alignment - TraesCS4D01G346300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G346300 chr4D 100.000 4336 0 0 1 4336 500310430 500314765 0.000000e+00 8008.0
1 TraesCS4D01G346300 chr5A 86.044 2121 176 60 1485 3540 681002349 681004414 0.000000e+00 2167.0
2 TraesCS4D01G346300 chr5A 86.962 813 64 18 3539 4336 230540335 230539550 0.000000e+00 876.0
3 TraesCS4D01G346300 chr5A 86.935 597 35 18 826 1414 681001785 681002346 7.910000e-177 630.0
4 TraesCS4D01G346300 chr5A 87.901 405 28 8 117 507 681001030 681001427 1.420000e-124 457.0
5 TraesCS4D01G346300 chr5A 93.519 108 3 2 4 108 681000677 681000783 1.610000e-34 158.0
6 TraesCS4D01G346300 chr5A 87.387 111 14 0 3556 3666 534831650 534831760 1.270000e-25 128.0
7 TraesCS4D01G346300 chr5A 89.231 65 3 3 497 559 681001454 681001516 1.290000e-10 78.7
8 TraesCS4D01G346300 chr5A 97.222 36 1 0 1424 1459 672837885 672837850 1.300000e-05 62.1
9 TraesCS4D01G346300 chr4B 86.833 1162 86 31 2212 3359 643650175 643651283 0.000000e+00 1236.0
10 TraesCS4D01G346300 chr4B 87.994 633 46 15 798 1422 643648247 643648857 0.000000e+00 721.0
11 TraesCS4D01G346300 chr4B 94.048 420 19 2 1791 2204 643649637 643650056 2.200000e-177 632.0
12 TraesCS4D01G346300 chr4B 97.753 178 4 0 1618 1795 643649301 643649478 1.510000e-79 307.0
13 TraesCS4D01G346300 chr4B 94.118 102 5 1 3365 3466 643651464 643651564 2.090000e-33 154.0
14 TraesCS4D01G346300 chr5D 93.992 799 21 5 3539 4336 486893857 486893085 0.000000e+00 1184.0
15 TraesCS4D01G346300 chr5D 91.439 806 32 21 3539 4336 479195899 479196675 0.000000e+00 1072.0
16 TraesCS4D01G346300 chr5D 98.325 418 6 1 3919 4336 526477822 526478238 0.000000e+00 732.0
17 TraesCS4D01G346300 chr7A 87.057 819 60 17 3537 4336 629782316 629783107 0.000000e+00 883.0
18 TraesCS4D01G346300 chr1A 87.247 792 63 17 3556 4336 583170124 583169360 0.000000e+00 869.0
19 TraesCS4D01G346300 chr1A 86.480 821 64 21 3535 4336 91588835 91588043 0.000000e+00 857.0
20 TraesCS4D01G346300 chr2A 87.199 789 63 18 3558 4336 737452976 737453736 0.000000e+00 863.0
21 TraesCS4D01G346300 chr2A 93.830 470 28 1 3867 4336 579838071 579838539 0.000000e+00 706.0
22 TraesCS4D01G346300 chr2A 95.122 41 2 0 1419 1459 203256254 203256214 1.010000e-06 65.8
23 TraesCS4D01G346300 chr3D 85.222 812 102 16 1989 2794 541600111 541599312 0.000000e+00 819.0
24 TraesCS4D01G346300 chr3D 94.915 236 12 0 3726 3961 389189877 389189642 1.900000e-98 370.0
25 TraesCS4D01G346300 chr3D 93.137 204 7 3 3528 3726 403675351 403675552 4.240000e-75 292.0
26 TraesCS4D01G346300 chr3D 81.522 368 52 10 1582 1949 541600455 541600104 5.490000e-74 289.0
27 TraesCS4D01G346300 chr3D 92.857 196 14 0 1118 1313 541632629 541632434 7.100000e-73 285.0
28 TraesCS4D01G346300 chr3D 94.475 181 10 0 1127 1307 538867195 538867375 3.300000e-71 279.0
29 TraesCS4D01G346300 chr3D 92.347 196 15 0 1118 1313 541197794 541197599 3.300000e-71 279.0
30 TraesCS4D01G346300 chr3D 94.872 39 2 0 1421 1459 454504206 454504168 1.300000e-05 62.1
31 TraesCS4D01G346300 chr3B 85.158 822 97 22 1982 2794 717280268 717279463 0.000000e+00 819.0
32 TraesCS4D01G346300 chr3B 91.705 217 15 3 1097 1313 717310168 717309955 9.120000e-77 298.0
33 TraesCS4D01G346300 chr3B 80.739 379 58 9 2987 3363 717279224 717278859 9.180000e-72 281.0
34 TraesCS4D01G346300 chr3B 82.667 75 11 2 1421 1494 684462979 684462906 1.010000e-06 65.8
35 TraesCS4D01G346300 chr3B 92.857 42 3 0 1421 1462 800582080 800582039 1.300000e-05 62.1
36 TraesCS4D01G346300 chr3A 84.436 816 105 16 1988 2794 677143064 677142262 0.000000e+00 784.0
37 TraesCS4D01G346300 chr3A 87.385 650 45 16 3688 4336 681529245 681529858 0.000000e+00 712.0
38 TraesCS4D01G346300 chr3A 91.121 214 17 2 1100 1313 677172189 677171978 5.490000e-74 289.0
39 TraesCS4D01G346300 chr3A 89.035 228 20 4 1081 1307 676850416 676850639 1.190000e-70 278.0
40 TraesCS4D01G346300 chr3A 88.034 234 23 4 1081 1313 676243859 676243630 5.530000e-69 272.0
41 TraesCS4D01G346300 chr3A 80.533 375 56 11 2987 3356 677142012 677141650 5.530000e-69 272.0
42 TraesCS4D01G346300 chr3A 83.755 277 37 6 2521 2793 676852048 676852320 5.560000e-64 255.0
43 TraesCS4D01G346300 chr3A 95.238 42 2 0 1489 1530 647760212 647760171 2.800000e-07 67.6
44 TraesCS4D01G346300 chr7D 96.753 462 15 0 3875 4336 69391090 69390629 0.000000e+00 771.0
45 TraesCS4D01G346300 chr7D 94.872 39 2 0 1421 1459 632404596 632404634 1.300000e-05 62.1
46 TraesCS4D01G346300 chrUn 93.617 470 29 1 3867 4336 422669815 422670283 0.000000e+00 701.0
47 TraesCS4D01G346300 chrUn 93.404 470 30 1 3867 4336 461622545 461623013 0.000000e+00 695.0
48 TraesCS4D01G346300 chrUn 87.755 49 6 0 1480 1528 48473129 48473081 1.680000e-04 58.4
49 TraesCS4D01G346300 chrUn 87.755 49 6 0 1480 1528 235115230 235115182 1.680000e-04 58.4
50 TraesCS4D01G346300 chrUn 87.755 49 6 0 1480 1528 237209172 237209220 1.680000e-04 58.4
51 TraesCS4D01G346300 chrUn 87.755 49 6 0 1480 1528 346822308 346822356 1.680000e-04 58.4
52 TraesCS4D01G346300 chrUn 87.755 49 6 0 1480 1528 433966374 433966422 1.680000e-04 58.4
53 TraesCS4D01G346300 chr7B 93.617 470 29 1 3867 4336 126085057 126085525 0.000000e+00 701.0
54 TraesCS4D01G346300 chr7B 78.313 249 41 10 3536 3775 629568285 629568529 9.720000e-32 148.0
55 TraesCS4D01G346300 chr7B 72.743 587 105 43 3538 4082 547703747 547703174 3.490000e-31 147.0
56 TraesCS4D01G346300 chr7B 100.000 35 0 0 1434 1468 479201482 479201516 1.010000e-06 65.8
57 TraesCS4D01G346300 chr5B 93.617 470 29 1 3867 4336 278452449 278452917 0.000000e+00 701.0
58 TraesCS4D01G346300 chr2D 94.769 325 13 3 3539 3861 454959159 454958837 1.800000e-138 503.0
59 TraesCS4D01G346300 chr2D 95.349 43 2 0 1484 1526 638137160 638137202 7.780000e-08 69.4
60 TraesCS4D01G346300 chr6B 89.764 254 10 8 3622 3870 683205584 683205342 1.170000e-80 311.0
61 TraesCS4D01G346300 chr6B 95.122 41 1 1 1485 1525 637872425 637872464 3.620000e-06 63.9
62 TraesCS4D01G346300 chr6D 94.521 146 6 1 3545 3688 43144870 43145015 1.570000e-54 224.0
63 TraesCS4D01G346300 chr2B 80.233 172 26 6 3539 3704 785797102 785797271 5.890000e-24 122.0
64 TraesCS4D01G346300 chr2B 84.783 92 9 5 662 751 699102945 699103033 2.150000e-13 87.9
65 TraesCS4D01G346300 chr2B 94.872 39 1 1 1421 1459 729527925 729527962 4.680000e-05 60.2
66 TraesCS4D01G346300 chr1D 100.000 31 0 0 1438 1468 360363547 360363577 1.680000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G346300 chr4D 500310430 500314765 4335 False 8008.00 8008 100.0000 1 4336 1 chr4D.!!$F1 4335
1 TraesCS4D01G346300 chr5A 230539550 230540335 785 True 876.00 876 86.9620 3539 4336 1 chr5A.!!$R1 797
2 TraesCS4D01G346300 chr5A 681000677 681004414 3737 False 698.14 2167 88.7260 4 3540 5 chr5A.!!$F2 3536
3 TraesCS4D01G346300 chr4B 643648247 643651564 3317 False 610.00 1236 92.1492 798 3466 5 chr4B.!!$F1 2668
4 TraesCS4D01G346300 chr5D 486893085 486893857 772 True 1184.00 1184 93.9920 3539 4336 1 chr5D.!!$R1 797
5 TraesCS4D01G346300 chr5D 479195899 479196675 776 False 1072.00 1072 91.4390 3539 4336 1 chr5D.!!$F1 797
6 TraesCS4D01G346300 chr7A 629782316 629783107 791 False 883.00 883 87.0570 3537 4336 1 chr7A.!!$F1 799
7 TraesCS4D01G346300 chr1A 583169360 583170124 764 True 869.00 869 87.2470 3556 4336 1 chr1A.!!$R2 780
8 TraesCS4D01G346300 chr1A 91588043 91588835 792 True 857.00 857 86.4800 3535 4336 1 chr1A.!!$R1 801
9 TraesCS4D01G346300 chr2A 737452976 737453736 760 False 863.00 863 87.1990 3558 4336 1 chr2A.!!$F2 778
10 TraesCS4D01G346300 chr3D 541599312 541600455 1143 True 554.00 819 83.3720 1582 2794 2 chr3D.!!$R5 1212
11 TraesCS4D01G346300 chr3B 717278859 717280268 1409 True 550.00 819 82.9485 1982 3363 2 chr3B.!!$R4 1381
12 TraesCS4D01G346300 chr3A 681529245 681529858 613 False 712.00 712 87.3850 3688 4336 1 chr3A.!!$F1 648
13 TraesCS4D01G346300 chr3A 677141650 677143064 1414 True 528.00 784 82.4845 1988 3356 2 chr3A.!!$R4 1368
14 TraesCS4D01G346300 chr3A 676850416 676852320 1904 False 266.50 278 86.3950 1081 2793 2 chr3A.!!$F2 1712

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
490 746 0.035176 AAATGCATGGGTGTGGTTGC 59.965 50.0 0.00 0.0 35.67 4.17 F
766 1060 0.119155 AGGAGGGTGAGAACATGGGA 59.881 55.0 0.00 0.0 0.00 4.37 F
1585 2302 0.036765 TCAGTCAAGCCCGCGTAAAT 60.037 50.0 4.92 0.0 0.00 1.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1566 1963 0.036765 ATTTACGCGGGCTTGACTGA 60.037 50.0 12.47 0.0 0.0 3.41 R
2750 4508 1.593196 TGCACTGTGAAGTAGCCAAC 58.407 50.0 12.86 0.0 0.0 3.77 R
3507 5544 0.040781 TTAAGTTTCCGCAGCAACGC 60.041 50.0 0.00 0.0 0.0 4.84 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 46 4.876125 ACATGATAGAAGCATACACGGAG 58.124 43.478 0.00 0.00 0.00 4.63
46 50 5.592054 TGATAGAAGCATACACGGAGAAAG 58.408 41.667 0.00 0.00 0.00 2.62
101 105 0.389817 TGGTCTCATGAACGAAGCCG 60.390 55.000 0.00 0.00 42.50 5.52
108 112 0.246635 ATGAACGAAGCCGCACTAGT 59.753 50.000 0.00 0.00 39.95 2.57
110 114 0.109226 GAACGAAGCCGCACTAGTCT 60.109 55.000 0.00 0.00 39.95 3.24
112 116 1.241990 ACGAAGCCGCACTAGTCTGA 61.242 55.000 0.00 0.00 39.95 3.27
113 117 0.101399 CGAAGCCGCACTAGTCTGAT 59.899 55.000 0.00 0.00 0.00 2.90
114 118 1.565305 GAAGCCGCACTAGTCTGATG 58.435 55.000 0.00 0.00 0.00 3.07
115 119 0.898320 AAGCCGCACTAGTCTGATGT 59.102 50.000 0.00 0.00 0.00 3.06
172 415 4.202346 TGCCCTTTTCTTTTTCCAGGAATG 60.202 41.667 1.58 0.00 0.00 2.67
179 422 2.505650 TTTTCCAGGAATGCGATGGA 57.494 45.000 1.58 0.00 41.33 3.41
180 423 2.042686 TTTCCAGGAATGCGATGGAG 57.957 50.000 1.58 0.00 43.71 3.86
181 424 0.464373 TTCCAGGAATGCGATGGAGC 60.464 55.000 0.00 0.00 43.71 4.70
270 514 6.322201 AGCCCATAGAGAAACATAATTTGTGG 59.678 38.462 0.00 0.00 38.99 4.17
282 526 2.352503 ATTTGTGGTTTGCGAGATGC 57.647 45.000 0.00 0.00 46.70 3.91
283 527 8.450558 ACATAATTTGTGGTTTGCGAGATGCA 62.451 38.462 0.00 0.00 45.03 3.96
362 606 4.635765 TCTTTTTCGATCGATGGAAGCAAT 59.364 37.500 20.18 0.00 0.00 3.56
387 631 3.766691 CCGGGTCGTCGGTTGGAT 61.767 66.667 0.00 0.00 44.60 3.41
389 633 2.098233 CGGGTCGTCGGTTGGATTG 61.098 63.158 0.00 0.00 0.00 2.67
455 711 5.676811 ACATTATAATTTGGGGAGGGAGAGT 59.323 40.000 0.00 0.00 0.00 3.24
457 713 1.002857 AATTTGGGGAGGGAGAGTGG 58.997 55.000 0.00 0.00 0.00 4.00
487 743 1.714541 TGAAAATGCATGGGTGTGGT 58.285 45.000 0.00 0.00 0.00 4.16
490 746 0.035176 AAATGCATGGGTGTGGTTGC 59.965 50.000 0.00 0.00 35.67 4.17
507 763 3.179048 GTTGCTGTTGTCCTTTGTGTTC 58.821 45.455 0.00 0.00 0.00 3.18
509 765 1.400494 GCTGTTGTCCTTTGTGTTCGT 59.600 47.619 0.00 0.00 0.00 3.85
510 766 2.791158 GCTGTTGTCCTTTGTGTTCGTG 60.791 50.000 0.00 0.00 0.00 4.35
511 767 2.418628 CTGTTGTCCTTTGTGTTCGTGT 59.581 45.455 0.00 0.00 0.00 4.49
512 768 2.160615 TGTTGTCCTTTGTGTTCGTGTG 59.839 45.455 0.00 0.00 0.00 3.82
513 769 2.388310 TGTCCTTTGTGTTCGTGTGA 57.612 45.000 0.00 0.00 0.00 3.58
515 771 4.061357 TGTCCTTTGTGTTCGTGTGATA 57.939 40.909 0.00 0.00 0.00 2.15
516 772 4.055360 TGTCCTTTGTGTTCGTGTGATAG 58.945 43.478 0.00 0.00 0.00 2.08
527 820 5.238868 TGTTCGTGTGATAGATAGTAGAGCC 59.761 44.000 0.00 0.00 0.00 4.70
528 821 4.969484 TCGTGTGATAGATAGTAGAGCCA 58.031 43.478 0.00 0.00 0.00 4.75
571 864 2.696076 GTGCAACGCGTACTCTAATG 57.304 50.000 14.46 6.28 0.00 1.90
572 865 1.323534 GTGCAACGCGTACTCTAATGG 59.676 52.381 14.46 0.00 0.00 3.16
573 866 1.067425 TGCAACGCGTACTCTAATGGT 60.067 47.619 14.46 0.00 0.00 3.55
574 867 1.997606 GCAACGCGTACTCTAATGGTT 59.002 47.619 14.46 0.00 0.00 3.67
575 868 2.028883 GCAACGCGTACTCTAATGGTTC 59.971 50.000 14.46 0.00 0.00 3.62
576 869 3.247442 CAACGCGTACTCTAATGGTTCA 58.753 45.455 14.46 0.00 0.00 3.18
580 873 3.060363 CGCGTACTCTAATGGTTCAACAC 59.940 47.826 0.00 0.00 0.00 3.32
595 888 3.125520 ACACCAATGTTGTCCACCC 57.874 52.632 0.00 0.00 34.46 4.61
596 889 0.821711 ACACCAATGTTGTCCACCCG 60.822 55.000 0.00 0.00 34.46 5.28
597 890 1.901464 ACCAATGTTGTCCACCCGC 60.901 57.895 0.00 0.00 0.00 6.13
598 891 2.635443 CCAATGTTGTCCACCCGCC 61.635 63.158 0.00 0.00 0.00 6.13
599 892 1.900981 CAATGTTGTCCACCCGCCA 60.901 57.895 0.00 0.00 0.00 5.69
600 893 1.152652 AATGTTGTCCACCCGCCAA 60.153 52.632 0.00 0.00 0.00 4.52
601 894 0.757188 AATGTTGTCCACCCGCCAAA 60.757 50.000 0.00 0.00 0.00 3.28
602 895 0.757188 ATGTTGTCCACCCGCCAAAA 60.757 50.000 0.00 0.00 0.00 2.44
603 896 0.970937 TGTTGTCCACCCGCCAAAAA 60.971 50.000 0.00 0.00 0.00 1.94
675 968 8.902540 ATTTATTTTGATGGAGTATGCGTAGA 57.097 30.769 0.00 0.00 0.00 2.59
686 980 3.890147 AGTATGCGTAGAGGAAGGTAAGG 59.110 47.826 0.00 0.00 0.00 2.69
697 991 6.669631 AGAGGAAGGTAAGGAAAGTTTTGAA 58.330 36.000 0.00 0.00 0.00 2.69
704 998 7.886338 AGGTAAGGAAAGTTTTGAATTAGCTG 58.114 34.615 0.00 0.00 30.72 4.24
708 1002 8.414629 AAGGAAAGTTTTGAATTAGCTGAGAT 57.585 30.769 0.00 0.00 0.00 2.75
751 1045 9.674824 GATTTGATTGAGTTATTAATGCAGGAG 57.325 33.333 0.00 0.00 0.00 3.69
753 1047 6.064060 TGATTGAGTTATTAATGCAGGAGGG 58.936 40.000 0.00 0.00 0.00 4.30
754 1048 5.450818 TTGAGTTATTAATGCAGGAGGGT 57.549 39.130 0.00 0.00 0.00 4.34
756 1050 4.473196 TGAGTTATTAATGCAGGAGGGTGA 59.527 41.667 0.00 0.00 0.00 4.02
757 1051 5.041191 AGTTATTAATGCAGGAGGGTGAG 57.959 43.478 0.00 0.00 0.00 3.51
758 1052 4.721776 AGTTATTAATGCAGGAGGGTGAGA 59.278 41.667 0.00 0.00 0.00 3.27
759 1053 5.191722 AGTTATTAATGCAGGAGGGTGAGAA 59.808 40.000 0.00 0.00 0.00 2.87
760 1054 3.350219 TTAATGCAGGAGGGTGAGAAC 57.650 47.619 0.00 0.00 0.00 3.01
761 1055 1.067295 AATGCAGGAGGGTGAGAACA 58.933 50.000 0.00 0.00 0.00 3.18
762 1056 1.293062 ATGCAGGAGGGTGAGAACAT 58.707 50.000 0.00 0.00 0.00 2.71
763 1057 0.325933 TGCAGGAGGGTGAGAACATG 59.674 55.000 0.00 0.00 0.00 3.21
764 1058 0.393537 GCAGGAGGGTGAGAACATGG 60.394 60.000 0.00 0.00 0.00 3.66
765 1059 0.254178 CAGGAGGGTGAGAACATGGG 59.746 60.000 0.00 0.00 0.00 4.00
766 1060 0.119155 AGGAGGGTGAGAACATGGGA 59.881 55.000 0.00 0.00 0.00 4.37
767 1061 0.543749 GGAGGGTGAGAACATGGGAG 59.456 60.000 0.00 0.00 0.00 4.30
769 1063 1.909302 GAGGGTGAGAACATGGGAGAA 59.091 52.381 0.00 0.00 0.00 2.87
770 1064 2.305927 GAGGGTGAGAACATGGGAGAAA 59.694 50.000 0.00 0.00 0.00 2.52
771 1065 2.716424 AGGGTGAGAACATGGGAGAAAA 59.284 45.455 0.00 0.00 0.00 2.29
772 1066 3.334881 AGGGTGAGAACATGGGAGAAAAT 59.665 43.478 0.00 0.00 0.00 1.82
773 1067 4.540099 AGGGTGAGAACATGGGAGAAAATA 59.460 41.667 0.00 0.00 0.00 1.40
774 1068 4.640647 GGGTGAGAACATGGGAGAAAATAC 59.359 45.833 0.00 0.00 0.00 1.89
775 1069 4.640647 GGTGAGAACATGGGAGAAAATACC 59.359 45.833 0.00 0.00 0.00 2.73
777 1071 5.355350 GTGAGAACATGGGAGAAAATACCAG 59.645 44.000 0.00 0.00 37.75 4.00
780 1074 3.968265 ACATGGGAGAAAATACCAGGTG 58.032 45.455 0.76 0.00 46.26 4.00
781 1075 3.591527 ACATGGGAGAAAATACCAGGTGA 59.408 43.478 0.76 0.00 46.26 4.02
782 1076 4.044065 ACATGGGAGAAAATACCAGGTGAA 59.956 41.667 0.76 0.00 46.26 3.18
783 1077 4.733077 TGGGAGAAAATACCAGGTGAAA 57.267 40.909 0.76 0.00 0.00 2.69
784 1078 4.662278 TGGGAGAAAATACCAGGTGAAAG 58.338 43.478 0.76 0.00 0.00 2.62
785 1079 4.352595 TGGGAGAAAATACCAGGTGAAAGA 59.647 41.667 0.76 0.00 0.00 2.52
787 1081 5.358160 GGGAGAAAATACCAGGTGAAAGATG 59.642 44.000 0.76 0.00 0.00 2.90
788 1082 5.358160 GGAGAAAATACCAGGTGAAAGATGG 59.642 44.000 0.76 0.00 40.10 3.51
789 1083 6.139679 AGAAAATACCAGGTGAAAGATGGA 57.860 37.500 0.76 0.00 37.54 3.41
790 1084 6.183347 AGAAAATACCAGGTGAAAGATGGAG 58.817 40.000 0.76 0.00 37.54 3.86
791 1085 4.510167 AATACCAGGTGAAAGATGGAGG 57.490 45.455 0.76 0.00 37.54 4.30
792 1086 0.329596 ACCAGGTGAAAGATGGAGGC 59.670 55.000 0.00 0.00 37.54 4.70
793 1087 0.745845 CCAGGTGAAAGATGGAGGCG 60.746 60.000 0.00 0.00 36.09 5.52
795 1089 0.250513 AGGTGAAAGATGGAGGCGAC 59.749 55.000 0.00 0.00 0.00 5.19
796 1090 1.084370 GGTGAAAGATGGAGGCGACG 61.084 60.000 0.00 0.00 0.00 5.12
804 1163 1.594862 GATGGAGGCGACGAGATTTTG 59.405 52.381 0.00 0.00 0.00 2.44
805 1164 0.320374 TGGAGGCGACGAGATTTTGT 59.680 50.000 0.00 0.00 0.00 2.83
827 1186 1.915614 GCTTGGCACGTGACCATGAG 61.916 60.000 30.67 24.81 36.96 2.90
833 1199 0.723414 CACGTGACCATGAGATGCAC 59.277 55.000 10.90 0.00 0.00 4.57
843 1209 0.547471 TGAGATGCACCAAGGAGGGA 60.547 55.000 0.00 0.00 43.89 4.20
943 1316 3.934068 TCCTGACGGAATTTAACCACTC 58.066 45.455 0.00 0.00 36.03 3.51
949 1322 2.014857 GGAATTTAACCACTCTCGGCC 58.985 52.381 0.00 0.00 0.00 6.13
952 1325 0.988832 TTTAACCACTCTCGGCCCAT 59.011 50.000 0.00 0.00 0.00 4.00
957 1330 1.153289 CACTCTCGGCCCATTGGAG 60.153 63.158 3.62 0.00 0.00 3.86
976 1349 0.947244 GGGGCTCACGCAGATATTTG 59.053 55.000 0.00 0.00 38.10 2.32
977 1350 0.308993 GGGCTCACGCAGATATTTGC 59.691 55.000 8.16 8.16 40.67 3.68
978 1351 1.303309 GGCTCACGCAGATATTTGCT 58.697 50.000 15.51 1.23 41.90 3.91
997 1387 1.278637 GCTTGGTGGTTCGTCAACG 59.721 57.895 0.00 0.00 41.45 4.10
1032 1422 2.427245 CCCGTCCCTCTCGCTCATT 61.427 63.158 0.00 0.00 0.00 2.57
1122 1517 2.597805 GAGGCGAGGCGAGGGATA 60.598 66.667 0.00 0.00 0.00 2.59
1365 1760 5.361285 ACCTATGTATATCTCCGCTCCAATC 59.639 44.000 0.00 0.00 0.00 2.67
1377 1772 7.097192 TCTCCGCTCCAATCATTGTTATATAC 58.903 38.462 0.00 0.00 0.00 1.47
1379 1774 6.873605 TCCGCTCCAATCATTGTTATATACAG 59.126 38.462 0.00 0.00 38.19 2.74
1380 1775 6.650807 CCGCTCCAATCATTGTTATATACAGT 59.349 38.462 0.00 0.00 38.19 3.55
1381 1776 7.817478 CCGCTCCAATCATTGTTATATACAGTA 59.183 37.037 0.00 0.00 38.19 2.74
1393 1788 8.887036 TGTTATATACAGTAGACAATTGCCTG 57.113 34.615 5.05 9.10 31.68 4.85
1395 1790 8.765219 GTTATATACAGTAGACAATTGCCTGTG 58.235 37.037 21.41 14.09 37.02 3.66
1402 1797 4.510038 AGACAATTGCCTGTGACAAATC 57.490 40.909 5.05 0.00 0.00 2.17
1416 1811 7.699391 CCTGTGACAAATCTGTTGCTATATTTG 59.301 37.037 0.00 0.00 42.37 2.32
1417 1812 7.028962 TGTGACAAATCTGTTGCTATATTTGC 58.971 34.615 0.00 0.00 41.06 3.68
1418 1813 7.028962 GTGACAAATCTGTTGCTATATTTGCA 58.971 34.615 0.00 0.00 41.06 4.08
1419 1814 7.008628 GTGACAAATCTGTTGCTATATTTGCAC 59.991 37.037 0.00 0.00 41.06 4.57
1420 1815 7.094248 TGACAAATCTGTTGCTATATTTGCACT 60.094 33.333 0.00 0.00 41.06 4.40
1421 1816 8.279970 ACAAATCTGTTGCTATATTTGCACTA 57.720 30.769 0.00 0.00 41.06 2.74
1422 1817 8.184192 ACAAATCTGTTGCTATATTTGCACTAC 58.816 33.333 0.00 1.84 41.06 2.73
1423 1818 8.400947 CAAATCTGTTGCTATATTTGCACTACT 58.599 33.333 3.06 0.00 40.40 2.57
1424 1819 8.511604 AATCTGTTGCTATATTTGCACTACTT 57.488 30.769 3.06 0.00 40.40 2.24
1425 1820 7.539712 TCTGTTGCTATATTTGCACTACTTC 57.460 36.000 3.06 0.00 40.40 3.01
1426 1821 6.538742 TCTGTTGCTATATTTGCACTACTTCC 59.461 38.462 3.06 0.00 40.40 3.46
1427 1822 6.414732 TGTTGCTATATTTGCACTACTTCCT 58.585 36.000 3.06 0.00 40.40 3.36
1428 1823 6.538742 TGTTGCTATATTTGCACTACTTCCTC 59.461 38.462 3.06 0.00 40.40 3.71
1429 1824 6.233905 TGCTATATTTGCACTACTTCCTCA 57.766 37.500 0.00 0.00 35.31 3.86
1430 1825 6.283694 TGCTATATTTGCACTACTTCCTCAG 58.716 40.000 0.00 0.00 35.31 3.35
1431 1826 6.127054 TGCTATATTTGCACTACTTCCTCAGT 60.127 38.462 0.00 0.00 36.08 3.41
1432 1827 6.422400 GCTATATTTGCACTACTTCCTCAGTC 59.578 42.308 0.00 0.00 36.88 3.51
1433 1828 4.623932 ATTTGCACTACTTCCTCAGTCA 57.376 40.909 0.00 0.00 36.88 3.41
1434 1829 4.415881 TTTGCACTACTTCCTCAGTCAA 57.584 40.909 0.00 0.00 36.88 3.18
1435 1830 3.667497 TGCACTACTTCCTCAGTCAAG 57.333 47.619 0.00 0.00 36.88 3.02
1436 1831 3.230976 TGCACTACTTCCTCAGTCAAGA 58.769 45.455 0.00 0.00 36.88 3.02
1437 1832 3.641436 TGCACTACTTCCTCAGTCAAGAA 59.359 43.478 0.00 0.00 36.88 2.52
1438 1833 4.100963 TGCACTACTTCCTCAGTCAAGAAA 59.899 41.667 0.00 0.00 36.88 2.52
1439 1834 5.221722 TGCACTACTTCCTCAGTCAAGAAAT 60.222 40.000 0.00 0.00 36.88 2.17
1440 1835 6.014584 TGCACTACTTCCTCAGTCAAGAAATA 60.015 38.462 0.00 0.00 36.88 1.40
1441 1836 7.044798 GCACTACTTCCTCAGTCAAGAAATAT 58.955 38.462 0.00 0.00 36.88 1.28
1442 1837 8.198109 GCACTACTTCCTCAGTCAAGAAATATA 58.802 37.037 0.00 0.00 36.88 0.86
1447 1842 7.984617 ACTTCCTCAGTCAAGAAATATAAGAGC 59.015 37.037 0.00 0.00 0.00 4.09
1448 1843 6.507900 TCCTCAGTCAAGAAATATAAGAGCG 58.492 40.000 0.00 0.00 0.00 5.03
1449 1844 6.096987 TCCTCAGTCAAGAAATATAAGAGCGT 59.903 38.462 0.00 0.00 0.00 5.07
1450 1845 6.758886 CCTCAGTCAAGAAATATAAGAGCGTT 59.241 38.462 0.00 0.00 0.00 4.84
1451 1846 7.278868 CCTCAGTCAAGAAATATAAGAGCGTTT 59.721 37.037 0.00 0.00 0.00 3.60
1452 1847 9.302345 CTCAGTCAAGAAATATAAGAGCGTTTA 57.698 33.333 0.00 0.00 0.00 2.01
1453 1848 9.302345 TCAGTCAAGAAATATAAGAGCGTTTAG 57.698 33.333 0.00 0.00 0.00 1.85
1454 1849 9.302345 CAGTCAAGAAATATAAGAGCGTTTAGA 57.698 33.333 0.00 0.00 0.00 2.10
1459 1854 8.508800 AGAAATATAAGAGCGTTTAGATCACG 57.491 34.615 0.00 0.00 37.82 4.35
1471 1866 7.310361 CGTTTAGATCACGCTCTTATACTTC 57.690 40.000 0.00 0.00 0.00 3.01
1472 1867 7.133513 CGTTTAGATCACGCTCTTATACTTCT 58.866 38.462 0.00 0.00 0.00 2.85
1473 1868 7.321746 CGTTTAGATCACGCTCTTATACTTCTC 59.678 40.741 0.00 0.00 0.00 2.87
1474 1869 5.699097 AGATCACGCTCTTATACTTCTCC 57.301 43.478 0.00 0.00 0.00 3.71
1475 1870 5.133941 AGATCACGCTCTTATACTTCTCCA 58.866 41.667 0.00 0.00 0.00 3.86
1476 1871 4.634184 TCACGCTCTTATACTTCTCCAC 57.366 45.455 0.00 0.00 0.00 4.02
1477 1872 4.014406 TCACGCTCTTATACTTCTCCACA 58.986 43.478 0.00 0.00 0.00 4.17
1478 1873 4.461431 TCACGCTCTTATACTTCTCCACAA 59.539 41.667 0.00 0.00 0.00 3.33
1479 1874 5.047590 TCACGCTCTTATACTTCTCCACAAA 60.048 40.000 0.00 0.00 0.00 2.83
1480 1875 5.289675 CACGCTCTTATACTTCTCCACAAAG 59.710 44.000 0.00 0.00 0.00 2.77
1481 1876 4.806247 CGCTCTTATACTTCTCCACAAAGG 59.194 45.833 0.00 0.00 39.47 3.11
1482 1877 5.119694 GCTCTTATACTTCTCCACAAAGGG 58.880 45.833 0.00 0.00 38.24 3.95
1483 1878 5.104900 GCTCTTATACTTCTCCACAAAGGGA 60.105 44.000 0.00 0.00 38.24 4.20
1525 1922 7.888514 ATTAATATGGATTGGAGGGAGTACA 57.111 36.000 0.00 0.00 0.00 2.90
1526 1923 7.888514 TTAATATGGATTGGAGGGAGTACAT 57.111 36.000 0.00 0.00 0.00 2.29
1540 1937 7.259088 AGGGAGTACATTTTTCTCACTGTAT 57.741 36.000 0.00 0.00 39.98 2.29
1541 1938 7.690256 AGGGAGTACATTTTTCTCACTGTATT 58.310 34.615 0.00 0.00 39.98 1.89
1543 1940 9.444600 GGGAGTACATTTTTCTCACTGTATTTA 57.555 33.333 0.00 0.00 0.00 1.40
1580 2297 1.577328 AATTGTCAGTCAAGCCCGCG 61.577 55.000 0.00 0.00 39.55 6.46
1585 2302 0.036765 TCAGTCAAGCCCGCGTAAAT 60.037 50.000 4.92 0.00 0.00 1.40
1593 2310 2.365582 AGCCCGCGTAAATCTTTGAAT 58.634 42.857 4.92 0.00 0.00 2.57
1598 2315 4.495184 CCCGCGTAAATCTTTGAATGTACC 60.495 45.833 4.92 0.00 0.00 3.34
1599 2316 4.093703 CCGCGTAAATCTTTGAATGTACCA 59.906 41.667 4.92 0.00 0.00 3.25
1732 2449 9.653287 CACCAACAGTGTAAATTTATCTCTCTA 57.347 33.333 0.31 0.00 41.93 2.43
1927 2837 2.053627 GACCAGCAAAACGAATGCAAG 58.946 47.619 12.72 6.96 46.22 4.01
1928 2838 1.269726 ACCAGCAAAACGAATGCAAGG 60.270 47.619 12.72 14.35 46.22 3.61
2090 3236 7.217200 TCAAGCAAGATTGTCTATATACCCAC 58.783 38.462 0.00 0.00 0.00 4.61
2119 3265 4.471025 TCTGACATGATATGTTGGTCCTGT 59.529 41.667 0.00 0.00 45.03 4.00
2187 3333 0.827368 CTTCCTGGTAGCCCTCAGAC 59.173 60.000 0.00 0.00 33.11 3.51
2197 3343 0.108585 GCCCTCAGACACCTTTCACA 59.891 55.000 0.00 0.00 0.00 3.58
2206 3352 8.204160 CCTCAGACACCTTTCACAACATATATA 58.796 37.037 0.00 0.00 0.00 0.86
2298 3721 1.138337 GCTGATGACGCAGATGCTAG 58.862 55.000 2.95 0.00 38.14 3.42
2494 4237 5.796935 CCATTTCAACTAATTCAACAGCTCG 59.203 40.000 0.00 0.00 0.00 5.03
2509 4252 0.583917 GCTCGTGGCTTTAGCATAGC 59.416 55.000 3.88 3.12 44.36 2.97
2510 4253 1.939974 CTCGTGGCTTTAGCATAGCA 58.060 50.000 3.88 0.00 44.36 3.49
2511 4254 2.487934 CTCGTGGCTTTAGCATAGCAT 58.512 47.619 3.88 0.00 44.36 3.79
2523 4276 7.172190 GCTTTAGCATAGCATGATCTTAGTTCA 59.828 37.037 0.00 0.00 41.59 3.18
2542 4295 7.341445 AGTTCACTCTGGATGATCTAACTAC 57.659 40.000 0.00 0.00 0.00 2.73
2552 4305 7.791029 TGGATGATCTAACTACACATAAGCAA 58.209 34.615 0.00 0.00 0.00 3.91
2553 4306 8.432013 TGGATGATCTAACTACACATAAGCAAT 58.568 33.333 0.00 0.00 0.00 3.56
2554 4307 8.930760 GGATGATCTAACTACACATAAGCAATC 58.069 37.037 0.00 0.00 0.00 2.67
2562 4315 6.643388 ACTACACATAAGCAATCATCACTGA 58.357 36.000 0.00 0.00 35.41 3.41
2607 4364 7.067008 TCCTACGTAATGGTGTAAGGTAAGTAC 59.933 40.741 0.00 0.00 0.00 2.73
2630 4387 6.258160 ACTTTTCATTTCGATTGGCTATTCG 58.742 36.000 7.92 7.92 36.72 3.34
2650 4407 5.654317 TCGTAAGCACTAGAGATAGTTCG 57.346 43.478 0.00 0.00 37.18 3.95
2847 4635 2.834549 AGCTAGATGTGCTACTGTGGTT 59.165 45.455 0.00 0.00 39.21 3.67
2879 4674 6.170506 TGATTGTGTGGAACTATACTTGGAC 58.829 40.000 0.00 0.00 38.04 4.02
2900 4695 2.476619 CGAACTGTCCTGTGATGTGAAC 59.523 50.000 0.00 0.00 0.00 3.18
2960 4783 3.731295 CAACAAGTGGGTTGCGTTT 57.269 47.368 0.00 0.00 41.37 3.60
2964 4787 1.135228 ACAAGTGGGTTGCGTTTTCAC 60.135 47.619 0.00 0.00 40.15 3.18
2981 4804 7.518370 GCGTTTTCACTTTCTCTGAGAATTGTA 60.518 37.037 19.93 11.50 33.67 2.41
2985 4822 8.768957 TTCACTTTCTCTGAGAATTGTATCAG 57.231 34.615 19.93 14.37 43.26 2.90
3014 4852 2.331194 CTGTTTGCATTGCAGGCTTAC 58.669 47.619 11.76 7.10 40.61 2.34
3038 4876 5.458041 ACTGAAATGACAGACAAAATGGG 57.542 39.130 0.00 0.00 40.63 4.00
3059 4897 5.163205 TGGGGACATCAGAATAGGTTATGTG 60.163 44.000 0.00 0.00 33.40 3.21
3086 4924 8.135529 AGTTACTTGCAAACAGGAAATTAAGTC 58.864 33.333 0.00 0.00 0.00 3.01
3093 4931 6.420903 GCAAACAGGAAATTAAGTCTTGGAAC 59.579 38.462 0.00 0.00 0.00 3.62
3107 4946 0.895100 TGGAACAGAACCTGGCATGC 60.895 55.000 9.90 9.90 35.51 4.06
3115 4954 0.537143 AACCTGGCATGCGAGTTCAA 60.537 50.000 25.50 0.00 0.00 2.69
3116 4955 0.322816 ACCTGGCATGCGAGTTCAAT 60.323 50.000 25.50 5.58 0.00 2.57
3117 4956 0.379669 CCTGGCATGCGAGTTCAATC 59.620 55.000 25.50 3.55 0.00 2.67
3118 4957 1.089112 CTGGCATGCGAGTTCAATCA 58.911 50.000 20.49 4.56 0.00 2.57
3119 4958 1.469703 CTGGCATGCGAGTTCAATCAA 59.530 47.619 20.49 0.00 0.00 2.57
3120 4959 2.093890 TGGCATGCGAGTTCAATCAAT 58.906 42.857 12.44 0.00 0.00 2.57
3121 4960 2.492881 TGGCATGCGAGTTCAATCAATT 59.507 40.909 12.44 0.00 0.00 2.32
3169 5008 0.746063 TTTGGTGTGCAAAGCAGGAG 59.254 50.000 9.07 0.00 40.08 3.69
3233 5072 3.333029 AACAAGCTTTGGTTTGCTGTT 57.667 38.095 0.00 0.00 39.71 3.16
3273 5112 1.133664 CAACGAAATAGCGGCGCAA 59.866 52.632 35.02 0.00 35.12 4.85
3274 5113 0.857311 CAACGAAATAGCGGCGCAAG 60.857 55.000 35.02 18.92 35.12 4.01
3275 5114 1.017177 AACGAAATAGCGGCGCAAGA 61.017 50.000 35.02 19.09 35.51 3.02
3276 5115 1.017177 ACGAAATAGCGGCGCAAGAA 61.017 50.000 35.02 16.48 35.51 2.52
3277 5116 0.586502 CGAAATAGCGGCGCAAGAAC 60.587 55.000 35.02 19.71 43.02 3.01
3278 5117 0.248094 GAAATAGCGGCGCAAGAACC 60.248 55.000 35.02 14.13 43.02 3.62
3279 5118 0.958382 AAATAGCGGCGCAAGAACCA 60.958 50.000 35.02 9.68 43.02 3.67
3280 5119 1.369091 AATAGCGGCGCAAGAACCAG 61.369 55.000 35.02 0.00 43.02 4.00
3281 5120 2.521958 ATAGCGGCGCAAGAACCAGT 62.522 55.000 35.02 12.42 43.02 4.00
3282 5121 4.389576 GCGGCGCAAGAACCAGTG 62.390 66.667 29.21 0.00 43.02 3.66
3283 5122 4.389576 CGGCGCAAGAACCAGTGC 62.390 66.667 10.83 0.00 43.02 4.40
3307 5161 1.153745 GCGCGAACTCCATCAGTCT 60.154 57.895 12.10 0.00 32.30 3.24
3345 5199 2.224018 GGAAGGAGCTGAGCAGTCTATG 60.224 54.545 7.39 0.00 0.00 2.23
3361 5395 7.500227 AGCAGTCTATGTGTAATGCATGTATTT 59.500 33.333 14.47 0.00 36.15 1.40
3362 5396 7.588854 GCAGTCTATGTGTAATGCATGTATTTG 59.411 37.037 14.47 4.08 33.92 2.32
3363 5397 7.588854 CAGTCTATGTGTAATGCATGTATTTGC 59.411 37.037 14.47 8.69 43.07 3.68
3373 5407 2.223735 GCATGTATTTGCTGCTGATGCT 60.224 45.455 0.00 0.00 39.57 3.79
3467 5501 5.447818 GCAGCTGCGTGAGAAATAAGTTTAT 60.448 40.000 25.23 0.00 0.00 1.40
3468 5502 6.188175 CAGCTGCGTGAGAAATAAGTTTATC 58.812 40.000 0.00 0.00 36.37 1.75
3470 5504 6.595716 AGCTGCGTGAGAAATAAGTTTATCTT 59.404 34.615 0.00 0.00 36.69 2.40
3482 5516 9.846248 AAATAAGTTTATCTTGATGTGCACTTC 57.154 29.630 22.34 22.34 37.56 3.01
3483 5517 5.886960 AGTTTATCTTGATGTGCACTTCC 57.113 39.130 25.08 12.22 0.00 3.46
3500 5537 9.331282 GTGCACTTCCTATAAACTAGATGATTT 57.669 33.333 10.32 0.00 0.00 2.17
3506 5543 6.785963 TCCTATAAACTAGATGATTTCCCCGT 59.214 38.462 0.00 0.00 0.00 5.28
3507 5544 6.874134 CCTATAAACTAGATGATTTCCCCGTG 59.126 42.308 0.00 0.00 0.00 4.94
3522 5559 2.725815 GTGCGTTGCTGCGGAAAC 60.726 61.111 6.29 6.29 37.81 2.78
3529 5566 3.305110 CGTTGCTGCGGAAACTTAAAAT 58.695 40.909 14.63 0.00 0.00 1.82
3533 5570 6.088883 CGTTGCTGCGGAAACTTAAAATATTT 59.911 34.615 14.63 0.00 0.00 1.40
3587 5632 0.541863 ACGTAGAAGGGCAGAATGGG 59.458 55.000 0.00 0.00 35.86 4.00
3872 5966 4.309950 GGACGTGAAGGCCCGTGT 62.310 66.667 9.60 0.00 44.51 4.49
3873 5967 2.652530 GACGTGAAGGCCCGTGTA 59.347 61.111 9.60 0.00 37.44 2.90
3874 5968 1.735559 GACGTGAAGGCCCGTGTAC 60.736 63.158 9.60 0.00 37.44 2.90
3875 5969 2.151049 GACGTGAAGGCCCGTGTACT 62.151 60.000 9.60 0.00 37.44 2.73
3876 5970 1.445582 CGTGAAGGCCCGTGTACTC 60.446 63.158 0.00 0.00 0.00 2.59
3877 5971 1.445582 GTGAAGGCCCGTGTACTCG 60.446 63.158 10.28 10.28 0.00 4.18
3878 5972 2.508663 GAAGGCCCGTGTACTCGC 60.509 66.667 11.71 0.00 0.00 5.03
3879 5973 4.078516 AAGGCCCGTGTACTCGCC 62.079 66.667 11.71 8.53 41.96 5.54
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.679783 TCATGTATACTCCAAGATTACATGGG 58.320 38.462 20.57 0.00 41.84 4.00
28 32 5.351465 TGATTTCTTTCTCCGTGTATGCTTC 59.649 40.000 0.00 0.00 0.00 3.86
42 46 7.951530 TCCTTTTCTTTGCATGATTTCTTTC 57.048 32.000 0.00 0.00 0.00 2.62
46 50 5.697633 TGCTTCCTTTTCTTTGCATGATTTC 59.302 36.000 0.00 0.00 0.00 2.17
101 105 3.176552 AGCATCACATCAGACTAGTGC 57.823 47.619 0.00 0.00 33.44 4.40
108 112 3.131755 ACGATCAGAAGCATCACATCAGA 59.868 43.478 0.00 0.00 0.00 3.27
110 114 3.531934 ACGATCAGAAGCATCACATCA 57.468 42.857 0.00 0.00 0.00 3.07
112 116 5.016051 ACTAACGATCAGAAGCATCACAT 57.984 39.130 0.00 0.00 0.00 3.21
113 117 4.158579 AGACTAACGATCAGAAGCATCACA 59.841 41.667 0.00 0.00 0.00 3.58
114 118 4.502282 CAGACTAACGATCAGAAGCATCAC 59.498 45.833 0.00 0.00 0.00 3.06
115 119 4.399303 TCAGACTAACGATCAGAAGCATCA 59.601 41.667 0.00 0.00 0.00 3.07
172 415 2.742372 ACACGGTTGCTCCATCGC 60.742 61.111 0.00 0.00 35.57 4.58
179 422 3.937814 TGATTTATCTCACACGGTTGCT 58.062 40.909 0.00 0.00 0.00 3.91
180 423 4.882671 ATGATTTATCTCACACGGTTGC 57.117 40.909 0.00 0.00 0.00 4.17
181 424 9.619316 TTTTAAATGATTTATCTCACACGGTTG 57.381 29.630 0.00 0.00 0.00 3.77
213 456 9.277783 CCATAAGAACATAGAGGGAATAGTTTG 57.722 37.037 0.00 0.00 0.00 2.93
222 465 4.341235 TCGACACCATAAGAACATAGAGGG 59.659 45.833 0.00 0.00 0.00 4.30
282 526 6.153756 TGATGTCAAAGAGAATTGCATGTTG 58.846 36.000 0.00 0.00 31.69 3.33
283 527 6.335471 TGATGTCAAAGAGAATTGCATGTT 57.665 33.333 0.00 0.00 31.69 2.71
289 533 6.560711 TGCATCATGATGTCAAAGAGAATTG 58.439 36.000 31.09 8.01 40.80 2.32
294 538 5.500645 ACATGCATCATGATGTCAAAGAG 57.499 39.130 31.09 21.34 43.81 2.85
324 568 5.759273 TCGAAAAAGAAACTCCGTCCATTTA 59.241 36.000 0.00 0.00 0.00 1.40
328 572 3.182341 TCGAAAAAGAAACTCCGTCCA 57.818 42.857 0.00 0.00 0.00 4.02
333 577 4.630069 TCCATCGATCGAAAAAGAAACTCC 59.370 41.667 23.50 0.00 0.00 3.85
334 578 5.779806 TCCATCGATCGAAAAAGAAACTC 57.220 39.130 23.50 0.00 0.00 3.01
345 589 1.138859 ACCATTGCTTCCATCGATCGA 59.861 47.619 21.86 21.86 0.00 3.59
362 606 2.422591 GACGACCCGGTTTCACCA 59.577 61.111 0.00 0.00 38.47 4.17
387 631 3.868077 CCTTTTGTTTCGCAAACCATCAA 59.132 39.130 8.60 0.00 45.70 2.57
389 633 3.712187 TCCTTTTGTTTCGCAAACCATC 58.288 40.909 8.60 0.00 45.70 3.51
425 669 6.267699 CCCTCCCCAAATTATAATGTTTCTCC 59.732 42.308 0.00 0.00 0.00 3.71
431 675 5.676811 ACTCTCCCTCCCCAAATTATAATGT 59.323 40.000 0.00 0.00 0.00 2.71
444 700 1.755008 CGTCTCCACTCTCCCTCCC 60.755 68.421 0.00 0.00 0.00 4.30
455 711 0.331278 ATTTTCATGGGGCGTCTCCA 59.669 50.000 0.80 0.80 38.82 3.86
457 713 0.101219 GCATTTTCATGGGGCGTCTC 59.899 55.000 0.00 0.00 0.00 3.36
487 743 2.159448 CGAACACAAAGGACAACAGCAA 60.159 45.455 0.00 0.00 0.00 3.91
490 746 2.418628 ACACGAACACAAAGGACAACAG 59.581 45.455 0.00 0.00 0.00 3.16
507 763 5.412904 TGATGGCTCTACTATCTATCACACG 59.587 44.000 0.00 0.00 37.18 4.49
509 765 7.507277 AGTTTGATGGCTCTACTATCTATCACA 59.493 37.037 0.00 0.00 37.18 3.58
510 766 7.891561 AGTTTGATGGCTCTACTATCTATCAC 58.108 38.462 0.00 0.00 37.18 3.06
511 767 7.725844 TGAGTTTGATGGCTCTACTATCTATCA 59.274 37.037 0.00 0.00 37.18 2.15
512 768 8.026607 GTGAGTTTGATGGCTCTACTATCTATC 58.973 40.741 0.00 0.00 37.18 2.08
513 769 7.728083 AGTGAGTTTGATGGCTCTACTATCTAT 59.272 37.037 0.00 0.00 37.18 1.98
515 771 5.896678 AGTGAGTTTGATGGCTCTACTATCT 59.103 40.000 0.00 0.00 37.18 1.98
516 772 6.155475 AGTGAGTTTGATGGCTCTACTATC 57.845 41.667 0.00 0.00 36.81 2.08
527 820 5.220931 GGGCAATTAGCTAGTGAGTTTGATG 60.221 44.000 9.97 0.00 44.79 3.07
528 821 4.884164 GGGCAATTAGCTAGTGAGTTTGAT 59.116 41.667 9.97 0.00 44.79 2.57
557 850 3.248266 GTTGAACCATTAGAGTACGCGT 58.752 45.455 19.17 19.17 0.00 6.01
558 851 3.060363 GTGTTGAACCATTAGAGTACGCG 59.940 47.826 3.53 3.53 0.00 6.01
559 852 4.579270 GTGTTGAACCATTAGAGTACGC 57.421 45.455 0.00 0.00 0.00 4.42
580 873 2.635443 GGCGGGTGGACAACATTGG 61.635 63.158 0.00 0.00 0.00 3.16
585 878 1.817209 TTTTTGGCGGGTGGACAAC 59.183 52.632 0.00 0.00 45.44 3.32
620 913 9.679661 ACCAACATTGATGTAAGTTATATGTCA 57.320 29.630 0.00 0.00 40.80 3.58
655 948 4.404394 TCCTCTACGCATACTCCATCAAAA 59.596 41.667 0.00 0.00 0.00 2.44
663 956 4.023021 CCTTACCTTCCTCTACGCATACTC 60.023 50.000 0.00 0.00 0.00 2.59
664 957 3.890147 CCTTACCTTCCTCTACGCATACT 59.110 47.826 0.00 0.00 0.00 2.12
665 958 3.887716 TCCTTACCTTCCTCTACGCATAC 59.112 47.826 0.00 0.00 0.00 2.39
666 959 4.174704 TCCTTACCTTCCTCTACGCATA 57.825 45.455 0.00 0.00 0.00 3.14
667 960 3.028094 TCCTTACCTTCCTCTACGCAT 57.972 47.619 0.00 0.00 0.00 4.73
668 961 2.519771 TCCTTACCTTCCTCTACGCA 57.480 50.000 0.00 0.00 0.00 5.24
669 962 3.195182 ACTTTCCTTACCTTCCTCTACGC 59.805 47.826 0.00 0.00 0.00 4.42
670 963 5.402997 AACTTTCCTTACCTTCCTCTACG 57.597 43.478 0.00 0.00 0.00 3.51
672 965 7.383156 TCAAAACTTTCCTTACCTTCCTCTA 57.617 36.000 0.00 0.00 0.00 2.43
673 966 6.262056 TCAAAACTTTCCTTACCTTCCTCT 57.738 37.500 0.00 0.00 0.00 3.69
674 967 6.954487 TTCAAAACTTTCCTTACCTTCCTC 57.046 37.500 0.00 0.00 0.00 3.71
675 968 7.914427 AATTCAAAACTTTCCTTACCTTCCT 57.086 32.000 0.00 0.00 0.00 3.36
686 980 9.683069 TCAAATCTCAGCTAATTCAAAACTTTC 57.317 29.630 0.00 0.00 0.00 2.62
723 1017 9.806203 CCTGCATTAATAACTCAATCAAATCAA 57.194 29.630 0.00 0.00 0.00 2.57
724 1018 9.187996 TCCTGCATTAATAACTCAATCAAATCA 57.812 29.630 0.00 0.00 0.00 2.57
725 1019 9.674824 CTCCTGCATTAATAACTCAATCAAATC 57.325 33.333 0.00 0.00 0.00 2.17
726 1020 8.636213 CCTCCTGCATTAATAACTCAATCAAAT 58.364 33.333 0.00 0.00 0.00 2.32
727 1021 7.068593 CCCTCCTGCATTAATAACTCAATCAAA 59.931 37.037 0.00 0.00 0.00 2.69
728 1022 6.547141 CCCTCCTGCATTAATAACTCAATCAA 59.453 38.462 0.00 0.00 0.00 2.57
729 1023 6.064060 CCCTCCTGCATTAATAACTCAATCA 58.936 40.000 0.00 0.00 0.00 2.57
730 1024 6.016777 CACCCTCCTGCATTAATAACTCAATC 60.017 42.308 0.00 0.00 0.00 2.67
731 1025 5.829924 CACCCTCCTGCATTAATAACTCAAT 59.170 40.000 0.00 0.00 0.00 2.57
732 1026 5.045213 TCACCCTCCTGCATTAATAACTCAA 60.045 40.000 0.00 0.00 0.00 3.02
733 1027 4.473196 TCACCCTCCTGCATTAATAACTCA 59.527 41.667 0.00 0.00 0.00 3.41
734 1028 5.036117 TCACCCTCCTGCATTAATAACTC 57.964 43.478 0.00 0.00 0.00 3.01
735 1029 4.721776 TCTCACCCTCCTGCATTAATAACT 59.278 41.667 0.00 0.00 0.00 2.24
736 1030 5.036117 TCTCACCCTCCTGCATTAATAAC 57.964 43.478 0.00 0.00 0.00 1.89
737 1031 5.045213 TGTTCTCACCCTCCTGCATTAATAA 60.045 40.000 0.00 0.00 0.00 1.40
738 1032 4.473196 TGTTCTCACCCTCCTGCATTAATA 59.527 41.667 0.00 0.00 0.00 0.98
739 1033 3.266772 TGTTCTCACCCTCCTGCATTAAT 59.733 43.478 0.00 0.00 0.00 1.40
751 1045 2.879103 TTTCTCCCATGTTCTCACCC 57.121 50.000 0.00 0.00 0.00 4.61
753 1047 5.253330 TGGTATTTTCTCCCATGTTCTCAC 58.747 41.667 0.00 0.00 0.00 3.51
754 1048 5.500234 CTGGTATTTTCTCCCATGTTCTCA 58.500 41.667 0.00 0.00 0.00 3.27
756 1050 4.292306 ACCTGGTATTTTCTCCCATGTTCT 59.708 41.667 0.00 0.00 0.00 3.01
757 1051 4.399303 CACCTGGTATTTTCTCCCATGTTC 59.601 45.833 0.00 0.00 0.00 3.18
758 1052 4.044065 TCACCTGGTATTTTCTCCCATGTT 59.956 41.667 0.00 0.00 0.00 2.71
759 1053 3.591527 TCACCTGGTATTTTCTCCCATGT 59.408 43.478 0.00 0.00 0.00 3.21
760 1054 4.235079 TCACCTGGTATTTTCTCCCATG 57.765 45.455 0.00 0.00 0.00 3.66
761 1055 4.946160 TTCACCTGGTATTTTCTCCCAT 57.054 40.909 0.00 0.00 0.00 4.00
762 1056 4.352595 TCTTTCACCTGGTATTTTCTCCCA 59.647 41.667 0.00 0.00 0.00 4.37
763 1057 4.918588 TCTTTCACCTGGTATTTTCTCCC 58.081 43.478 0.00 0.00 0.00 4.30
764 1058 5.358160 CCATCTTTCACCTGGTATTTTCTCC 59.642 44.000 0.00 0.00 0.00 3.71
765 1059 6.180472 TCCATCTTTCACCTGGTATTTTCTC 58.820 40.000 0.00 0.00 0.00 2.87
766 1060 6.139679 TCCATCTTTCACCTGGTATTTTCT 57.860 37.500 0.00 0.00 0.00 2.52
767 1061 5.358160 CCTCCATCTTTCACCTGGTATTTTC 59.642 44.000 0.00 0.00 0.00 2.29
769 1063 4.860022 CCTCCATCTTTCACCTGGTATTT 58.140 43.478 0.00 0.00 0.00 1.40
770 1064 3.372025 GCCTCCATCTTTCACCTGGTATT 60.372 47.826 0.00 0.00 0.00 1.89
771 1065 2.173569 GCCTCCATCTTTCACCTGGTAT 59.826 50.000 0.00 0.00 0.00 2.73
772 1066 1.559682 GCCTCCATCTTTCACCTGGTA 59.440 52.381 0.00 0.00 0.00 3.25
773 1067 0.329596 GCCTCCATCTTTCACCTGGT 59.670 55.000 0.00 0.00 0.00 4.00
774 1068 0.745845 CGCCTCCATCTTTCACCTGG 60.746 60.000 0.00 0.00 0.00 4.45
775 1069 0.250234 TCGCCTCCATCTTTCACCTG 59.750 55.000 0.00 0.00 0.00 4.00
777 1071 1.084370 CGTCGCCTCCATCTTTCACC 61.084 60.000 0.00 0.00 0.00 4.02
780 1074 0.456221 TCTCGTCGCCTCCATCTTTC 59.544 55.000 0.00 0.00 0.00 2.62
781 1075 1.115467 ATCTCGTCGCCTCCATCTTT 58.885 50.000 0.00 0.00 0.00 2.52
782 1076 1.115467 AATCTCGTCGCCTCCATCTT 58.885 50.000 0.00 0.00 0.00 2.40
783 1077 1.115467 AAATCTCGTCGCCTCCATCT 58.885 50.000 0.00 0.00 0.00 2.90
784 1078 1.594862 CAAAATCTCGTCGCCTCCATC 59.405 52.381 0.00 0.00 0.00 3.51
785 1079 1.066143 ACAAAATCTCGTCGCCTCCAT 60.066 47.619 0.00 0.00 0.00 3.41
787 1081 1.128692 CAACAAAATCTCGTCGCCTCC 59.871 52.381 0.00 0.00 0.00 4.30
788 1082 1.128692 CCAACAAAATCTCGTCGCCTC 59.871 52.381 0.00 0.00 0.00 4.70
789 1083 1.156736 CCAACAAAATCTCGTCGCCT 58.843 50.000 0.00 0.00 0.00 5.52
790 1084 0.454452 GCCAACAAAATCTCGTCGCC 60.454 55.000 0.00 0.00 0.00 5.54
791 1085 0.517316 AGCCAACAAAATCTCGTCGC 59.483 50.000 0.00 0.00 0.00 5.19
792 1086 2.574322 CAAGCCAACAAAATCTCGTCG 58.426 47.619 0.00 0.00 0.00 5.12
793 1087 2.922335 GCCAAGCCAACAAAATCTCGTC 60.922 50.000 0.00 0.00 0.00 4.20
795 1089 1.000385 TGCCAAGCCAACAAAATCTCG 60.000 47.619 0.00 0.00 0.00 4.04
796 1090 2.407090 GTGCCAAGCCAACAAAATCTC 58.593 47.619 0.00 0.00 0.00 2.75
804 1163 2.331451 GTCACGTGCCAAGCCAAC 59.669 61.111 11.67 0.00 0.00 3.77
805 1164 2.904866 GGTCACGTGCCAAGCCAA 60.905 61.111 19.85 0.00 0.00 4.52
827 1186 0.393537 CACTCCCTCCTTGGTGCATC 60.394 60.000 0.00 0.00 0.00 3.91
833 1199 3.732849 GCCCCACTCCCTCCTTGG 61.733 72.222 0.00 0.00 0.00 3.61
843 1209 1.299976 GATCTGAAACGGCCCCACT 59.700 57.895 0.00 0.00 0.00 4.00
885 1251 3.451894 CAATCAGGGGTTGCCGGC 61.452 66.667 22.73 22.73 0.00 6.13
890 1256 1.683365 CAGGGGCAATCAGGGGTTG 60.683 63.158 0.00 0.00 0.00 3.77
891 1257 1.442886 TTCAGGGGCAATCAGGGGTT 61.443 55.000 0.00 0.00 0.00 4.11
892 1258 1.856873 TTCAGGGGCAATCAGGGGT 60.857 57.895 0.00 0.00 0.00 4.95
896 1269 3.909662 CCGTTCAGGGGCAATCAG 58.090 61.111 0.00 0.00 35.97 2.90
943 1316 4.195334 CCCCTCCAATGGGCCGAG 62.195 72.222 0.00 0.00 45.78 4.63
949 1322 2.124570 CGTGAGCCCCTCCAATGG 60.125 66.667 0.00 0.00 0.00 3.16
976 1349 1.444119 TTGACGAACCACCAAGCAGC 61.444 55.000 0.00 0.00 0.00 5.25
977 1350 0.307760 GTTGACGAACCACCAAGCAG 59.692 55.000 0.00 0.00 0.00 4.24
978 1351 1.433053 CGTTGACGAACCACCAAGCA 61.433 55.000 0.00 0.00 43.02 3.91
997 1387 2.732619 GGACGGGTCCCTCCATGAC 61.733 68.421 17.26 0.00 43.94 3.06
1026 1416 2.405191 GAGCGGGCGAAAATGAGC 59.595 61.111 0.00 0.00 0.00 4.26
1049 1439 2.294512 CGTCTCTCGATGATTGGATGGA 59.705 50.000 0.00 0.00 42.86 3.41
1095 1490 2.904866 CTCGCCTCCTCCTCCTCG 60.905 72.222 0.00 0.00 0.00 4.63
1152 1547 1.890979 GCTCGTCCGGTCCTCGATA 60.891 63.158 0.00 0.00 42.43 2.92
1255 1650 2.646175 CGGGGGAGAAGACGAGCAA 61.646 63.158 0.00 0.00 0.00 3.91
1346 1741 5.012046 ACAATGATTGGAGCGGAGATATACA 59.988 40.000 10.27 0.00 34.12 2.29
1347 1742 5.482908 ACAATGATTGGAGCGGAGATATAC 58.517 41.667 10.27 0.00 34.12 1.47
1353 1748 6.873605 TGTATATAACAATGATTGGAGCGGAG 59.126 38.462 10.27 0.00 34.29 4.63
1377 1772 3.402110 TGTCACAGGCAATTGTCTACTG 58.598 45.455 13.20 14.51 35.40 2.74
1379 1774 4.829064 TTTGTCACAGGCAATTGTCTAC 57.171 40.909 13.20 8.37 0.00 2.59
1380 1775 5.181811 CAGATTTGTCACAGGCAATTGTCTA 59.818 40.000 13.20 0.00 0.00 2.59
1381 1776 4.022589 CAGATTTGTCACAGGCAATTGTCT 60.023 41.667 6.77 6.77 0.00 3.41
1393 1788 7.008628 GTGCAAATATAGCAACAGATTTGTCAC 59.991 37.037 15.55 15.55 44.64 3.67
1395 1790 7.253422 AGTGCAAATATAGCAACAGATTTGTC 58.747 34.615 4.51 7.29 44.64 3.18
1402 1797 6.540189 AGGAAGTAGTGCAAATATAGCAACAG 59.460 38.462 4.51 0.00 44.64 3.16
1416 1811 3.944055 TCTTGACTGAGGAAGTAGTGC 57.056 47.619 0.00 0.00 40.07 4.40
1421 1816 7.984617 GCTCTTATATTTCTTGACTGAGGAAGT 59.015 37.037 0.00 0.00 43.85 3.01
1422 1817 7.168972 CGCTCTTATATTTCTTGACTGAGGAAG 59.831 40.741 0.00 0.00 0.00 3.46
1423 1818 6.980978 CGCTCTTATATTTCTTGACTGAGGAA 59.019 38.462 0.00 0.00 0.00 3.36
1424 1819 6.096987 ACGCTCTTATATTTCTTGACTGAGGA 59.903 38.462 0.00 0.00 0.00 3.71
1425 1820 6.276847 ACGCTCTTATATTTCTTGACTGAGG 58.723 40.000 0.00 0.00 0.00 3.86
1426 1821 7.763172 AACGCTCTTATATTTCTTGACTGAG 57.237 36.000 0.00 0.00 0.00 3.35
1427 1822 9.302345 CTAAACGCTCTTATATTTCTTGACTGA 57.698 33.333 0.00 0.00 0.00 3.41
1428 1823 9.302345 TCTAAACGCTCTTATATTTCTTGACTG 57.698 33.333 0.00 0.00 0.00 3.51
1433 1828 8.969267 CGTGATCTAAACGCTCTTATATTTCTT 58.031 33.333 0.00 0.00 33.79 2.52
1434 1829 8.508800 CGTGATCTAAACGCTCTTATATTTCT 57.491 34.615 0.00 0.00 33.79 2.52
1447 1842 7.133513 AGAAGTATAAGAGCGTGATCTAAACG 58.866 38.462 0.00 0.00 43.81 3.60
1448 1843 7.592164 GGAGAAGTATAAGAGCGTGATCTAAAC 59.408 40.741 0.00 0.00 0.00 2.01
1449 1844 7.284716 TGGAGAAGTATAAGAGCGTGATCTAAA 59.715 37.037 0.00 0.00 0.00 1.85
1450 1845 6.771267 TGGAGAAGTATAAGAGCGTGATCTAA 59.229 38.462 0.00 0.00 0.00 2.10
1451 1846 6.205076 GTGGAGAAGTATAAGAGCGTGATCTA 59.795 42.308 0.00 0.00 0.00 1.98
1452 1847 5.009210 GTGGAGAAGTATAAGAGCGTGATCT 59.991 44.000 0.00 0.00 0.00 2.75
1453 1848 5.216648 GTGGAGAAGTATAAGAGCGTGATC 58.783 45.833 0.00 0.00 0.00 2.92
1454 1849 4.645136 TGTGGAGAAGTATAAGAGCGTGAT 59.355 41.667 0.00 0.00 0.00 3.06
1455 1850 4.014406 TGTGGAGAAGTATAAGAGCGTGA 58.986 43.478 0.00 0.00 0.00 4.35
1456 1851 4.371855 TGTGGAGAAGTATAAGAGCGTG 57.628 45.455 0.00 0.00 0.00 5.34
1457 1852 5.401531 TTTGTGGAGAAGTATAAGAGCGT 57.598 39.130 0.00 0.00 0.00 5.07
1458 1853 4.806247 CCTTTGTGGAGAAGTATAAGAGCG 59.194 45.833 0.00 0.00 38.35 5.03
1459 1854 5.104900 TCCCTTTGTGGAGAAGTATAAGAGC 60.105 44.000 0.00 0.00 38.35 4.09
1460 1855 6.546428 TCCCTTTGTGGAGAAGTATAAGAG 57.454 41.667 0.00 0.00 38.35 2.85
1472 1867 6.013206 TGCTTATTTACTACTCCCTTTGTGGA 60.013 38.462 0.00 0.00 38.35 4.02
1473 1868 6.177610 TGCTTATTTACTACTCCCTTTGTGG 58.822 40.000 0.00 0.00 0.00 4.17
1474 1869 7.174253 TGTTGCTTATTTACTACTCCCTTTGTG 59.826 37.037 0.00 0.00 0.00 3.33
1475 1870 7.228590 TGTTGCTTATTTACTACTCCCTTTGT 58.771 34.615 0.00 0.00 0.00 2.83
1476 1871 7.681939 TGTTGCTTATTTACTACTCCCTTTG 57.318 36.000 0.00 0.00 0.00 2.77
1477 1872 8.879427 ATTGTTGCTTATTTACTACTCCCTTT 57.121 30.769 0.00 0.00 0.00 3.11
1478 1873 8.879427 AATTGTTGCTTATTTACTACTCCCTT 57.121 30.769 0.00 0.00 0.00 3.95
1479 1874 9.969001 TTAATTGTTGCTTATTTACTACTCCCT 57.031 29.630 0.00 0.00 0.00 4.20
1492 1887 8.859090 CCTCCAATCCATATTAATTGTTGCTTA 58.141 33.333 0.00 0.00 32.20 3.09
1493 1888 7.202029 CCCTCCAATCCATATTAATTGTTGCTT 60.202 37.037 0.00 0.00 32.20 3.91
1513 1908 4.597507 AGTGAGAAAAATGTACTCCCTCCA 59.402 41.667 0.00 0.00 0.00 3.86
1543 1940 9.376075 CTGACAATTTCATACACAGTTCTATCT 57.624 33.333 0.00 0.00 32.17 1.98
1557 1954 2.489329 CGGGCTTGACTGACAATTTCAT 59.511 45.455 0.00 0.00 37.88 2.57
1566 1963 0.036765 ATTTACGCGGGCTTGACTGA 60.037 50.000 12.47 0.00 0.00 3.41
1593 2310 4.024218 CCGTTAACGTTTGGAAATGGTACA 60.024 41.667 25.15 0.00 39.89 2.90
1598 2315 5.106634 TGGATACCGTTAACGTTTGGAAATG 60.107 40.000 25.15 9.96 37.74 2.32
1599 2316 5.002516 TGGATACCGTTAACGTTTGGAAAT 58.997 37.500 25.15 2.38 37.74 2.17
2235 3492 4.891168 AGGATTGCACATAATCAGCATTGA 59.109 37.500 0.00 0.00 38.51 2.57
2298 3721 4.792521 TTCTCCAGTTTCTCTAGCTCAC 57.207 45.455 0.00 0.00 0.00 3.51
2494 4237 4.070716 AGATCATGCTATGCTAAAGCCAC 58.929 43.478 0.00 0.00 39.30 5.01
2507 4250 4.713814 TCCAGAGTGAACTAAGATCATGCT 59.286 41.667 0.00 0.00 0.00 3.79
2508 4251 5.016051 TCCAGAGTGAACTAAGATCATGC 57.984 43.478 0.00 0.00 0.00 4.06
2509 4252 6.814043 TCATCCAGAGTGAACTAAGATCATG 58.186 40.000 0.00 0.00 0.00 3.07
2510 4253 7.510001 AGATCATCCAGAGTGAACTAAGATCAT 59.490 37.037 0.00 0.00 32.71 2.45
2511 4254 6.838090 AGATCATCCAGAGTGAACTAAGATCA 59.162 38.462 0.00 0.00 32.71 2.92
2523 4276 8.768501 TTATGTGTAGTTAGATCATCCAGAGT 57.231 34.615 0.00 0.00 0.00 3.24
2542 4295 6.436261 GGAATCAGTGATGATTGCTTATGTG 58.564 40.000 6.34 0.00 41.44 3.21
2587 4344 9.492973 TGAAAAGTACTTACCTTACACCATTAC 57.507 33.333 8.92 0.00 0.00 1.89
2607 4364 6.258160 ACGAATAGCCAATCGAAATGAAAAG 58.742 36.000 9.27 0.00 41.43 2.27
2630 4387 7.192148 TCATCGAACTATCTCTAGTGCTTAC 57.808 40.000 0.00 0.00 38.23 2.34
2650 4407 7.959689 AGAGTCAATATGCAACTACATCATC 57.040 36.000 0.00 0.00 0.00 2.92
2750 4508 1.593196 TGCACTGTGAAGTAGCCAAC 58.407 50.000 12.86 0.00 0.00 3.77
2847 4635 9.005777 GTATAGTTCCACACAATCAAGGTTTAA 57.994 33.333 0.00 0.00 0.00 1.52
2864 4659 5.069501 ACAGTTCGTCCAAGTATAGTTCC 57.930 43.478 0.00 0.00 0.00 3.62
2879 4674 2.438868 TCACATCACAGGACAGTTCG 57.561 50.000 0.00 0.00 0.00 3.95
2900 4695 3.525537 ACATCTGTTGACTTCGGCTATG 58.474 45.455 0.00 0.00 0.00 2.23
2960 4783 8.370940 ACTGATACAATTCTCAGAGAAAGTGAA 58.629 33.333 24.30 11.68 41.13 3.18
2981 4804 4.286297 TGCAAACAGGCTTACTACTGAT 57.714 40.909 0.00 0.00 38.09 2.90
2985 4822 3.057596 TGCAATGCAAACAGGCTTACTAC 60.058 43.478 5.01 0.00 34.76 2.73
3014 4852 6.349611 CCCCATTTTGTCTGTCATTTCAGTAG 60.350 42.308 0.00 0.00 36.85 2.57
3038 4876 6.821388 ACTCACATAACCTATTCTGATGTCC 58.179 40.000 0.00 0.00 0.00 4.02
3052 4890 6.017440 TCCTGTTTGCAAGTAACTCACATAAC 60.017 38.462 0.00 0.00 0.00 1.89
3054 4892 5.616270 TCCTGTTTGCAAGTAACTCACATA 58.384 37.500 0.00 0.00 0.00 2.29
3055 4893 4.460263 TCCTGTTTGCAAGTAACTCACAT 58.540 39.130 0.00 0.00 0.00 3.21
3059 4897 8.135529 ACTTAATTTCCTGTTTGCAAGTAACTC 58.864 33.333 0.00 0.00 0.00 3.01
3086 4924 1.542915 CATGCCAGGTTCTGTTCCAAG 59.457 52.381 0.00 0.00 0.00 3.61
3093 4931 0.957395 AACTCGCATGCCAGGTTCTG 60.957 55.000 16.98 0.00 0.00 3.02
3120 4959 9.653287 CCTTGTGAGTAGTCTTTGTATTGATAA 57.347 33.333 0.00 0.00 0.00 1.75
3121 4960 7.764443 GCCTTGTGAGTAGTCTTTGTATTGATA 59.236 37.037 0.00 0.00 0.00 2.15
3138 4977 2.095059 GCACACCAAATAGCCTTGTGAG 60.095 50.000 4.26 0.00 40.02 3.51
3233 5072 0.607217 CCAACATCTGCACTCCAGCA 60.607 55.000 0.00 0.00 41.50 4.41
3292 5143 2.101582 CCCCTAAGACTGATGGAGTTCG 59.898 54.545 0.00 0.00 33.83 3.95
3307 5161 1.098589 TCCTTCCTCCTGTCCCCTAA 58.901 55.000 0.00 0.00 0.00 2.69
3361 5395 1.022982 GCAGTGTAGCATCAGCAGCA 61.023 55.000 0.00 0.00 45.49 4.41
3362 5396 0.743701 AGCAGTGTAGCATCAGCAGC 60.744 55.000 0.00 0.00 45.49 5.25
3363 5397 1.007580 CAGCAGTGTAGCATCAGCAG 58.992 55.000 0.00 0.00 45.49 4.24
3373 5407 0.890542 CAAGGCAAGGCAGCAGTGTA 60.891 55.000 0.00 0.00 35.83 2.90
3467 5501 6.711277 AGTTTATAGGAAGTGCACATCAAGA 58.289 36.000 22.37 8.13 0.00 3.02
3468 5502 6.992063 AGTTTATAGGAAGTGCACATCAAG 57.008 37.500 22.37 0.00 0.00 3.02
3470 5504 7.418337 TCTAGTTTATAGGAAGTGCACATCA 57.582 36.000 22.37 4.55 0.00 3.07
3482 5516 6.874134 CACGGGGAAATCATCTAGTTTATAGG 59.126 42.308 0.00 0.00 0.00 2.57
3483 5517 6.369065 GCACGGGGAAATCATCTAGTTTATAG 59.631 42.308 0.00 0.00 0.00 1.31
3506 5543 1.160946 TAAGTTTCCGCAGCAACGCA 61.161 50.000 0.00 0.00 0.00 5.24
3507 5544 0.040781 TTAAGTTTCCGCAGCAACGC 60.041 50.000 0.00 0.00 0.00 4.84
3533 5570 1.611491 CTACGGAAGCAAGCCCAAAAA 59.389 47.619 0.00 0.00 0.00 1.94
3666 5711 1.280066 GTGCTGGCAGTTTGTTTGTG 58.720 50.000 17.16 0.00 0.00 3.33
3667 5712 0.179140 CGTGCTGGCAGTTTGTTTGT 60.179 50.000 17.16 0.00 0.00 2.83
3668 5713 0.100325 TCGTGCTGGCAGTTTGTTTG 59.900 50.000 17.16 0.00 0.00 2.93
3669 5714 1.001378 GATCGTGCTGGCAGTTTGTTT 60.001 47.619 17.16 0.00 0.00 2.83
3670 5715 0.593128 GATCGTGCTGGCAGTTTGTT 59.407 50.000 17.16 1.05 0.00 2.83
3671 5716 0.250467 AGATCGTGCTGGCAGTTTGT 60.250 50.000 17.16 0.00 0.00 2.83
3672 5717 1.394917 GTAGATCGTGCTGGCAGTTTG 59.605 52.381 17.16 6.03 0.00 2.93


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.