Multiple sequence alignment - TraesCS4D01G346000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G346000 chr4D 100.000 2524 0 0 1 2524 500293301 500290778 0.000000e+00 4662.0
1 TraesCS4D01G346000 chr4D 90.625 512 22 12 643 1150 500271579 500271090 0.000000e+00 656.0
2 TraesCS4D01G346000 chr4D 81.046 765 66 41 484 1199 500286524 500285790 1.030000e-148 536.0
3 TraesCS4D01G346000 chrUn 86.398 1588 117 51 862 2431 307772043 307770537 0.000000e+00 1644.0
4 TraesCS4D01G346000 chrUn 87.518 681 62 12 1760 2431 285030185 285029519 0.000000e+00 765.0
5 TraesCS4D01G346000 chrUn 87.518 681 62 12 1760 2431 293564513 293565179 0.000000e+00 765.0
6 TraesCS4D01G346000 chrUn 87.518 681 62 12 1760 2431 315390747 315391413 0.000000e+00 765.0
7 TraesCS4D01G346000 chrUn 87.518 681 62 12 1760 2431 345622996 345622330 0.000000e+00 765.0
8 TraesCS4D01G346000 chrUn 85.714 721 52 20 484 1193 60373958 60374638 0.000000e+00 713.0
9 TraesCS4D01G346000 chrUn 87.103 535 40 10 665 1193 60456671 60457182 1.680000e-161 579.0
10 TraesCS4D01G346000 chrUn 84.133 271 35 5 1281 1550 60457191 60457454 3.220000e-64 255.0
11 TraesCS4D01G346000 chrUn 83.395 271 37 5 1281 1550 60374647 60374910 6.970000e-61 244.0
12 TraesCS4D01G346000 chrUn 84.974 193 17 3 1004 1193 332275199 332275016 4.290000e-43 185.0
13 TraesCS4D01G346000 chrUn 84.974 193 17 3 1004 1193 381972073 381971890 4.290000e-43 185.0
14 TraesCS4D01G346000 chr3D 98.097 473 8 1 1 473 573849269 573849740 0.000000e+00 822.0
15 TraesCS4D01G346000 chr3D 98.276 174 3 0 1 174 606491708 606491881 3.150000e-79 305.0
16 TraesCS4D01G346000 chr6D 97.665 471 9 1 1 469 444477315 444477785 0.000000e+00 808.0
17 TraesCS4D01G346000 chr5D 97.452 471 12 0 1 471 43005959 43005489 0.000000e+00 804.0
18 TraesCS4D01G346000 chr7D 94.268 471 16 1 1 471 597114307 597114766 0.000000e+00 710.0
19 TraesCS4D01G346000 chr7D 96.144 389 13 2 83 471 596242878 596242492 3.540000e-178 634.0
20 TraesCS4D01G346000 chr7D 98.851 87 1 0 1 87 596251878 596251792 3.360000e-34 156.0
21 TraesCS4D01G346000 chr3B 92.547 483 32 4 1 481 752859057 752859537 0.000000e+00 689.0
22 TraesCS4D01G346000 chr1A 90.428 491 37 5 4 488 19130743 19130257 2.740000e-179 638.0
23 TraesCS4D01G346000 chr5B 89.916 476 37 5 3 470 509689128 509688656 9.990000e-169 603.0
24 TraesCS4D01G346000 chr5B 100.000 28 0 0 1248 1275 605322407 605322434 5.000000e-03 52.8
25 TraesCS4D01G346000 chr4B 81.543 726 79 23 484 1193 643492608 643491922 4.750000e-152 547.0
26 TraesCS4D01G346000 chr4B 89.254 335 17 12 475 804 643625323 643625003 3.910000e-108 401.0
27 TraesCS4D01G346000 chr4B 83.761 351 25 15 854 1193 643576203 643575874 1.130000e-78 303.0
28 TraesCS4D01G346000 chr4B 90.741 54 3 2 561 612 643627801 643627748 1.250000e-08 71.3
29 TraesCS4D01G346000 chr4B 82.278 79 9 4 538 612 643534274 643534197 2.100000e-06 63.9
30 TraesCS4D01G346000 chr4B 92.308 39 3 0 1250 1288 609505185 609505223 3.510000e-04 56.5
31 TraesCS4D01G346000 chr5A 83.641 379 35 14 1576 1946 680887070 680886711 5.200000e-87 331.0
32 TraesCS4D01G346000 chr5A 86.667 285 20 7 594 865 680976796 680976517 1.470000e-77 300.0
33 TraesCS4D01G346000 chr5A 92.056 214 10 5 898 1110 680976525 680976318 6.830000e-76 294.0
34 TraesCS4D01G346000 chr5A 90.226 133 9 4 1998 2127 680886712 680886581 1.200000e-38 171.0
35 TraesCS4D01G346000 chr5A 97.674 43 1 0 471 513 680976833 680976791 9.680000e-10 75.0
36 TraesCS4D01G346000 chr2A 82.447 188 29 4 286 471 6505204 6505389 7.230000e-36 161.0
37 TraesCS4D01G346000 chr2D 80.435 92 11 6 1198 1283 73569917 73569827 2.100000e-06 63.9
38 TraesCS4D01G346000 chr2D 80.000 90 8 9 1199 1283 86086991 86087075 9.750000e-05 58.4
39 TraesCS4D01G346000 chr2B 80.899 89 9 8 1199 1283 139078909 139078993 2.100000e-06 63.9
40 TraesCS4D01G346000 chr6B 80.488 82 10 6 1198 1277 24930155 24930232 9.750000e-05 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G346000 chr4D 500290778 500293301 2523 True 4662.00 4662 100.000000 1 2524 1 chr4D.!!$R3 2523
1 TraesCS4D01G346000 chr4D 500285790 500286524 734 True 536.00 536 81.046000 484 1199 1 chr4D.!!$R2 715
2 TraesCS4D01G346000 chrUn 307770537 307772043 1506 True 1644.00 1644 86.398000 862 2431 1 chrUn.!!$R2 1569
3 TraesCS4D01G346000 chrUn 285029519 285030185 666 True 765.00 765 87.518000 1760 2431 1 chrUn.!!$R1 671
4 TraesCS4D01G346000 chrUn 293564513 293565179 666 False 765.00 765 87.518000 1760 2431 1 chrUn.!!$F1 671
5 TraesCS4D01G346000 chrUn 315390747 315391413 666 False 765.00 765 87.518000 1760 2431 1 chrUn.!!$F2 671
6 TraesCS4D01G346000 chrUn 345622330 345622996 666 True 765.00 765 87.518000 1760 2431 1 chrUn.!!$R4 671
7 TraesCS4D01G346000 chrUn 60373958 60374910 952 False 478.50 713 84.554500 484 1550 2 chrUn.!!$F3 1066
8 TraesCS4D01G346000 chrUn 60456671 60457454 783 False 417.00 579 85.618000 665 1550 2 chrUn.!!$F4 885
9 TraesCS4D01G346000 chr4B 643491922 643492608 686 True 547.00 547 81.543000 484 1193 1 chr4B.!!$R1 709
10 TraesCS4D01G346000 chr4B 643625003 643627801 2798 True 236.15 401 89.997500 475 804 2 chr4B.!!$R4 329
11 TraesCS4D01G346000 chr5A 680976318 680976833 515 True 223.00 300 92.132333 471 1110 3 chr5A.!!$R2 639

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
204 205 0.032952 ACGCTCACAAGCTTTACCGA 59.967 50.0 0.0 0.0 46.91 4.69 F
318 319 0.107654 AAAGACATAGCCGAGTGCCC 60.108 55.0 0.0 0.0 42.71 5.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1110 3195 0.031314 CGTCTGGAGGATGATCACCG 59.969 60.0 0.00 0.00 32.95 4.94 R
1594 3687 0.170116 TGGCAATGAATTCCGCGTTC 59.830 50.0 4.92 2.78 0.00 3.95 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 3.838271 CGGCAGCCTCCGCTTCTA 61.838 66.667 10.54 0.00 45.55 2.10
28 29 2.202946 GGCAGCCTCCGCTTCTAC 60.203 66.667 3.29 0.00 45.55 2.59
29 30 2.202946 GCAGCCTCCGCTTCTACC 60.203 66.667 0.00 0.00 45.55 3.18
30 31 2.501610 CAGCCTCCGCTTCTACCC 59.498 66.667 0.00 0.00 45.55 3.69
31 32 2.038975 AGCCTCCGCTTCTACCCA 59.961 61.111 0.00 0.00 45.55 4.51
33 34 1.153349 GCCTCCGCTTCTACCCAAG 60.153 63.158 0.00 0.00 0.00 3.61
39 40 3.195698 CTTCTACCCAAGCGCGGC 61.196 66.667 8.83 0.00 0.00 6.53
56 57 4.200283 CGGCAGCCTCCTCGTCTC 62.200 72.222 10.54 0.00 0.00 3.36
57 58 4.200283 GGCAGCCTCCTCGTCTCG 62.200 72.222 3.29 0.00 0.00 4.04
58 59 4.200283 GCAGCCTCCTCGTCTCGG 62.200 72.222 0.00 0.00 0.00 4.63
69 70 4.194720 GTCTCGGCGAGGCACGAT 62.195 66.667 34.18 0.00 45.77 3.73
70 71 4.193334 TCTCGGCGAGGCACGATG 62.193 66.667 33.93 9.62 45.77 3.84
100 101 4.697756 CAGGGTCGCCGGCTTGAA 62.698 66.667 26.68 4.00 0.00 2.69
102 103 3.202706 GGGTCGCCGGCTTGAATC 61.203 66.667 26.68 10.65 0.00 2.52
103 104 2.435938 GGTCGCCGGCTTGAATCA 60.436 61.111 26.68 0.00 0.00 2.57
104 105 2.750888 GGTCGCCGGCTTGAATCAC 61.751 63.158 26.68 8.83 0.00 3.06
105 106 1.741770 GTCGCCGGCTTGAATCACT 60.742 57.895 26.68 0.00 0.00 3.41
106 107 1.741401 TCGCCGGCTTGAATCACTG 60.741 57.895 26.68 4.37 0.00 3.66
107 108 2.034879 CGCCGGCTTGAATCACTGT 61.035 57.895 26.68 0.00 0.00 3.55
108 109 1.796796 GCCGGCTTGAATCACTGTC 59.203 57.895 22.15 0.00 0.00 3.51
109 110 1.970917 GCCGGCTTGAATCACTGTCG 61.971 60.000 22.15 3.09 0.00 4.35
110 111 1.421485 CGGCTTGAATCACTGTCGC 59.579 57.895 0.00 0.00 0.00 5.19
111 112 1.796796 GGCTTGAATCACTGTCGCC 59.203 57.895 0.00 0.00 0.00 5.54
112 113 0.955428 GGCTTGAATCACTGTCGCCA 60.955 55.000 0.00 0.00 36.16 5.69
114 115 1.470098 GCTTGAATCACTGTCGCCATT 59.530 47.619 0.00 0.00 0.00 3.16
115 116 2.730090 GCTTGAATCACTGTCGCCATTG 60.730 50.000 0.00 0.00 0.00 2.82
116 117 2.470983 TGAATCACTGTCGCCATTGA 57.529 45.000 0.00 0.00 35.10 2.57
118 119 2.679336 TGAATCACTGTCGCCATTGATG 59.321 45.455 0.00 0.00 39.33 3.07
119 120 2.696989 ATCACTGTCGCCATTGATGA 57.303 45.000 0.00 0.00 38.94 2.92
120 121 2.696989 TCACTGTCGCCATTGATGAT 57.303 45.000 0.00 0.00 0.00 2.45
121 122 2.282407 TCACTGTCGCCATTGATGATG 58.718 47.619 0.00 0.00 35.42 3.07
122 123 2.093553 TCACTGTCGCCATTGATGATGA 60.094 45.455 0.00 0.00 38.03 2.92
124 125 1.259770 CTGTCGCCATTGATGATGACG 59.740 52.381 9.44 0.00 42.18 4.35
125 126 0.041839 GTCGCCATTGATGATGACGC 60.042 55.000 0.00 0.00 40.83 5.19
126 127 1.159713 TCGCCATTGATGATGACGCC 61.160 55.000 0.00 0.00 40.83 5.68
127 128 1.162181 CGCCATTGATGATGACGCCT 61.162 55.000 0.00 0.00 34.90 5.52
131 132 3.254166 GCCATTGATGATGACGCCTATTT 59.746 43.478 0.00 0.00 38.03 1.40
132 133 4.261741 GCCATTGATGATGACGCCTATTTT 60.262 41.667 0.00 0.00 38.03 1.82
133 134 5.217393 CCATTGATGATGACGCCTATTTTG 58.783 41.667 0.00 0.00 38.03 2.44
134 135 5.221106 CCATTGATGATGACGCCTATTTTGT 60.221 40.000 0.00 0.00 38.03 2.83
136 137 3.065233 TGATGATGACGCCTATTTTGTGC 59.935 43.478 0.00 0.00 0.00 4.57
137 138 2.710377 TGATGACGCCTATTTTGTGCT 58.290 42.857 0.00 0.00 0.00 4.40
138 139 2.677836 TGATGACGCCTATTTTGTGCTC 59.322 45.455 0.00 0.00 0.00 4.26
139 140 1.075542 TGACGCCTATTTTGTGCTCG 58.924 50.000 0.00 0.00 0.00 5.03
140 141 0.247695 GACGCCTATTTTGTGCTCGC 60.248 55.000 0.00 0.00 0.00 5.03
141 142 1.062525 CGCCTATTTTGTGCTCGCC 59.937 57.895 0.00 0.00 0.00 5.54
142 143 1.062525 GCCTATTTTGTGCTCGCCG 59.937 57.895 0.00 0.00 0.00 6.46
143 144 1.721487 CCTATTTTGTGCTCGCCGG 59.279 57.895 0.00 0.00 0.00 6.13
161 162 3.906649 CGACGCGCTCATGCAGTC 61.907 66.667 5.73 2.20 40.58 3.51
162 163 3.558411 GACGCGCTCATGCAGTCC 61.558 66.667 5.73 0.00 39.17 3.85
167 168 4.819761 GCTCATGCAGTCCGGCGA 62.820 66.667 9.30 0.00 39.41 5.54
169 170 4.147449 TCATGCAGTCCGGCGAGG 62.147 66.667 9.30 0.00 42.97 4.63
174 175 2.436646 CAGTCCGGCGAGGCATTT 60.437 61.111 9.30 0.00 40.77 2.32
175 176 2.040544 CAGTCCGGCGAGGCATTTT 61.041 57.895 9.30 0.00 40.77 1.82
176 177 1.303317 AGTCCGGCGAGGCATTTTT 60.303 52.632 9.30 0.00 40.77 1.94
196 197 2.187351 TTTTGTTCACGCTCACAAGC 57.813 45.000 0.00 0.00 45.56 4.01
199 200 1.378531 TGTTCACGCTCACAAGCTTT 58.621 45.000 0.00 0.00 46.91 3.51
200 201 2.556257 TGTTCACGCTCACAAGCTTTA 58.444 42.857 0.00 0.00 46.91 1.85
201 202 2.286833 TGTTCACGCTCACAAGCTTTAC 59.713 45.455 0.00 0.00 46.91 2.01
203 204 0.163788 CACGCTCACAAGCTTTACCG 59.836 55.000 0.00 0.00 46.91 4.02
204 205 0.032952 ACGCTCACAAGCTTTACCGA 59.967 50.000 0.00 0.00 46.91 4.69
205 206 0.716108 CGCTCACAAGCTTTACCGAG 59.284 55.000 0.00 1.45 46.91 4.63
207 208 1.461127 GCTCACAAGCTTTACCGAGTG 59.539 52.381 0.00 0.52 45.55 3.51
208 209 1.461127 CTCACAAGCTTTACCGAGTGC 59.539 52.381 0.00 0.00 0.00 4.40
209 210 1.202592 TCACAAGCTTTACCGAGTGCA 60.203 47.619 0.00 0.00 0.00 4.57
211 212 1.225855 CAAGCTTTACCGAGTGCACA 58.774 50.000 21.04 0.00 0.00 4.57
212 213 1.806542 CAAGCTTTACCGAGTGCACAT 59.193 47.619 21.04 3.82 0.00 3.21
213 214 1.442769 AGCTTTACCGAGTGCACATG 58.557 50.000 21.04 10.58 0.00 3.21
216 217 2.616960 CTTTACCGAGTGCACATGCTA 58.383 47.619 21.04 0.00 42.66 3.49
217 218 2.293677 TTACCGAGTGCACATGCTAG 57.706 50.000 21.04 3.74 42.66 3.42
220 221 0.457443 CCGAGTGCACATGCTAGAGA 59.543 55.000 21.04 0.00 42.66 3.10
221 222 1.134995 CCGAGTGCACATGCTAGAGAA 60.135 52.381 21.04 0.00 42.66 2.87
222 223 1.923204 CGAGTGCACATGCTAGAGAAC 59.077 52.381 21.04 0.00 42.66 3.01
224 225 3.186119 GAGTGCACATGCTAGAGAACTC 58.814 50.000 21.04 4.89 42.66 3.01
225 226 1.923204 GTGCACATGCTAGAGAACTCG 59.077 52.381 13.17 0.00 42.66 4.18
226 227 1.134995 TGCACATGCTAGAGAACTCGG 60.135 52.381 5.31 0.00 42.66 4.63
228 229 1.134995 CACATGCTAGAGAACTCGGCA 60.135 52.381 19.93 19.93 43.03 5.69
230 231 2.028112 ACATGCTAGAGAACTCGGCAAA 60.028 45.455 20.86 7.17 42.52 3.68
232 233 4.141937 ACATGCTAGAGAACTCGGCAAATA 60.142 41.667 20.86 6.42 42.52 1.40
234 235 3.699538 TGCTAGAGAACTCGGCAAATAGA 59.300 43.478 17.22 1.16 39.04 1.98
235 236 4.202060 TGCTAGAGAACTCGGCAAATAGAG 60.202 45.833 17.22 0.00 39.04 2.43
238 239 0.301987 GAACTCGGCAAATAGAGCGC 59.698 55.000 0.00 0.00 37.99 5.92
241 242 3.640000 CGGCAAATAGAGCGCCCG 61.640 66.667 2.29 2.83 43.17 6.13
244 245 1.352056 GCAAATAGAGCGCCCGTTC 59.648 57.895 2.29 0.00 0.00 3.95
246 247 1.082117 CAAATAGAGCGCCCGTTCGT 61.082 55.000 2.29 0.00 0.00 3.85
247 248 0.390735 AAATAGAGCGCCCGTTCGTT 60.391 50.000 2.29 0.00 0.00 3.85
248 249 0.804933 AATAGAGCGCCCGTTCGTTC 60.805 55.000 2.29 0.00 39.47 3.95
249 250 2.624437 ATAGAGCGCCCGTTCGTTCC 62.624 60.000 2.29 0.00 39.92 3.62
253 254 3.770424 CGCCCGTTCGTTCCGTTC 61.770 66.667 0.00 0.00 0.00 3.95
254 255 2.356673 GCCCGTTCGTTCCGTTCT 60.357 61.111 0.00 0.00 0.00 3.01
255 256 2.664436 GCCCGTTCGTTCCGTTCTG 61.664 63.158 0.00 0.00 0.00 3.02
256 257 1.300388 CCCGTTCGTTCCGTTCTGT 60.300 57.895 0.00 0.00 0.00 3.41
257 258 1.280206 CCCGTTCGTTCCGTTCTGTC 61.280 60.000 0.00 0.00 0.00 3.51
259 260 1.280206 CGTTCGTTCCGTTCTGTCCC 61.280 60.000 0.00 0.00 0.00 4.46
260 261 1.007038 TTCGTTCCGTTCTGTCCCG 60.007 57.895 0.00 0.00 0.00 5.14
261 262 1.737355 TTCGTTCCGTTCTGTCCCGT 61.737 55.000 0.00 0.00 0.00 5.28
262 263 1.731969 CGTTCCGTTCTGTCCCGTC 60.732 63.158 0.00 0.00 0.00 4.79
264 265 3.562779 TTCCGTTCTGTCCCGTCGC 62.563 63.158 0.00 0.00 0.00 5.19
266 267 2.049433 CGTTCTGTCCCGTCGCTT 60.049 61.111 0.00 0.00 0.00 4.68
267 268 1.663702 CGTTCTGTCCCGTCGCTTT 60.664 57.895 0.00 0.00 0.00 3.51
288 289 3.810310 TTTTTGCCGTGAACCAGATTT 57.190 38.095 0.00 0.00 0.00 2.17
289 290 2.791383 TTTGCCGTGAACCAGATTTG 57.209 45.000 0.00 0.00 0.00 2.32
290 291 1.974265 TTGCCGTGAACCAGATTTGA 58.026 45.000 0.00 0.00 0.00 2.69
291 292 2.198827 TGCCGTGAACCAGATTTGAT 57.801 45.000 0.00 0.00 0.00 2.57
292 293 3.342377 TGCCGTGAACCAGATTTGATA 57.658 42.857 0.00 0.00 0.00 2.15
293 294 3.006940 TGCCGTGAACCAGATTTGATAC 58.993 45.455 0.00 0.00 0.00 2.24
295 296 3.309954 GCCGTGAACCAGATTTGATACTC 59.690 47.826 0.00 0.00 0.00 2.59
296 297 3.551890 CCGTGAACCAGATTTGATACTCG 59.448 47.826 0.00 0.00 0.00 4.18
297 298 3.551890 CGTGAACCAGATTTGATACTCGG 59.448 47.826 0.00 0.00 0.00 4.63
299 300 5.657474 GTGAACCAGATTTGATACTCGGTA 58.343 41.667 0.00 0.00 0.00 4.02
300 301 6.103997 GTGAACCAGATTTGATACTCGGTAA 58.896 40.000 0.00 0.00 0.00 2.85
301 302 6.592607 GTGAACCAGATTTGATACTCGGTAAA 59.407 38.462 0.00 0.00 0.00 2.01
302 303 6.816640 TGAACCAGATTTGATACTCGGTAAAG 59.183 38.462 0.00 0.00 0.00 1.85
303 304 6.540438 ACCAGATTTGATACTCGGTAAAGA 57.460 37.500 0.00 0.00 0.00 2.52
304 305 6.338937 ACCAGATTTGATACTCGGTAAAGAC 58.661 40.000 0.00 0.00 0.00 3.01
305 306 6.070995 ACCAGATTTGATACTCGGTAAAGACA 60.071 38.462 0.00 0.00 0.00 3.41
306 307 6.986817 CCAGATTTGATACTCGGTAAAGACAT 59.013 38.462 0.00 0.00 0.00 3.06
307 308 8.141909 CCAGATTTGATACTCGGTAAAGACATA 58.858 37.037 0.00 0.00 0.00 2.29
308 309 9.186323 CAGATTTGATACTCGGTAAAGACATAG 57.814 37.037 0.00 0.00 0.00 2.23
309 310 7.868415 AGATTTGATACTCGGTAAAGACATAGC 59.132 37.037 0.00 0.00 0.00 2.97
310 311 5.449107 TGATACTCGGTAAAGACATAGCC 57.551 43.478 0.00 0.00 0.00 3.93
311 312 2.865343 ACTCGGTAAAGACATAGCCG 57.135 50.000 0.00 0.00 43.32 5.52
314 315 2.372264 TCGGTAAAGACATAGCCGAGT 58.628 47.619 0.00 0.00 45.26 4.18
315 316 2.098607 TCGGTAAAGACATAGCCGAGTG 59.901 50.000 0.00 0.00 45.26 3.51
316 317 2.202566 GGTAAAGACATAGCCGAGTGC 58.797 52.381 0.00 0.00 41.71 4.40
317 318 2.202566 GTAAAGACATAGCCGAGTGCC 58.797 52.381 0.00 0.00 42.71 5.01
318 319 0.107654 AAAGACATAGCCGAGTGCCC 60.108 55.000 0.00 0.00 42.71 5.36
319 320 2.279517 GACATAGCCGAGTGCCCG 60.280 66.667 0.00 0.00 42.71 6.13
320 321 2.758327 ACATAGCCGAGTGCCCGA 60.758 61.111 0.00 0.00 42.71 5.14
321 322 2.279517 CATAGCCGAGTGCCCGAC 60.280 66.667 0.00 0.00 42.71 4.79
322 323 3.900892 ATAGCCGAGTGCCCGACG 61.901 66.667 0.00 0.00 42.71 5.12
328 329 2.654877 GAGTGCCCGACGAAAGGA 59.345 61.111 0.00 0.00 0.00 3.36
329 330 1.005394 GAGTGCCCGACGAAAGGAA 60.005 57.895 0.00 0.00 0.00 3.36
330 331 1.289800 GAGTGCCCGACGAAAGGAAC 61.290 60.000 0.00 0.00 0.00 3.62
332 333 1.005394 TGCCCGACGAAAGGAACTC 60.005 57.895 0.00 0.00 38.49 3.01
333 334 2.092882 GCCCGACGAAAGGAACTCG 61.093 63.158 0.00 0.00 38.49 4.18
334 335 1.445582 CCCGACGAAAGGAACTCGG 60.446 63.158 0.00 0.00 44.42 4.63
335 336 2.092882 CCGACGAAAGGAACTCGGC 61.093 63.158 0.00 0.00 38.49 5.54
336 337 1.372499 CGACGAAAGGAACTCGGCA 60.372 57.895 0.00 0.00 44.87 5.69
337 338 0.942410 CGACGAAAGGAACTCGGCAA 60.942 55.000 0.00 0.00 44.87 4.52
338 339 1.223187 GACGAAAGGAACTCGGCAAA 58.777 50.000 0.00 0.00 44.02 3.68
339 340 0.942252 ACGAAAGGAACTCGGCAAAC 59.058 50.000 0.00 0.00 38.49 2.93
340 341 0.941542 CGAAAGGAACTCGGCAAACA 59.058 50.000 0.00 0.00 38.49 2.83
341 342 1.535462 CGAAAGGAACTCGGCAAACAT 59.465 47.619 0.00 0.00 38.49 2.71
342 343 2.412847 CGAAAGGAACTCGGCAAACATC 60.413 50.000 0.00 0.00 38.49 3.06
344 345 1.813513 AGGAACTCGGCAAACATCTG 58.186 50.000 0.00 0.00 0.00 2.90
345 346 1.072331 AGGAACTCGGCAAACATCTGT 59.928 47.619 0.00 0.00 0.00 3.41
347 348 5.467670 AAGGAACTCGGCAAACATCTGTTT 61.468 41.667 2.51 2.51 44.01 2.83
356 357 1.247567 AACATCTGTTTGCCGGAAGG 58.752 50.000 5.05 0.00 45.54 3.46
357 358 2.159230 AACATCTGTTTGCCGGAAGGG 61.159 52.381 5.05 0.00 43.74 3.95
358 359 4.737826 AACATCTGTTTGCCGGAAGGGT 62.738 50.000 5.05 0.00 43.74 4.34
359 360 5.399431 AACATCTGTTTGCCGGAAGGGTA 62.399 47.826 5.05 0.00 43.74 3.69
360 361 6.639676 AACATCTGTTTGCCGGAAGGGTAT 62.640 45.833 5.05 0.00 43.74 2.73
361 362 7.330659 AACATCTGTTTGCCGGAAGGGTATA 62.331 44.000 5.05 0.00 43.74 1.47
362 363 8.717573 AACATCTGTTTGCCGGAAGGGTATAA 62.718 42.308 5.05 0.00 43.74 0.98
368 369 1.370064 CGGAAGGGTATAAGCCGGG 59.630 63.158 2.18 0.00 41.56 5.73
370 371 1.720781 GGAAGGGTATAAGCCGGGTA 58.279 55.000 6.57 0.00 41.56 3.69
372 373 1.000171 GAAGGGTATAAGCCGGGTACG 60.000 57.143 6.57 0.00 41.56 3.67
374 375 1.466851 GGGTATAAGCCGGGTACGCT 61.467 60.000 6.57 0.00 39.22 5.07
375 376 0.390492 GGTATAAGCCGGGTACGCTT 59.610 55.000 6.57 9.70 38.95 4.68
377 378 1.862827 GTATAAGCCGGGTACGCTTTG 59.137 52.381 6.57 0.17 37.53 2.77
378 379 1.093496 ATAAGCCGGGTACGCTTTGC 61.093 55.000 6.57 9.20 37.53 3.68
379 380 4.999215 TATAAGCCGGGTACGCTTTGCC 62.999 54.545 6.57 0.00 37.53 4.52
381 382 4.745751 CCGGGTACGCTTTGCCGA 62.746 66.667 8.43 0.00 39.22 5.54
382 383 3.186047 CGGGTACGCTTTGCCGAG 61.186 66.667 8.43 0.00 0.00 4.63
383 384 2.047560 GGGTACGCTTTGCCGAGT 60.048 61.111 2.05 0.00 0.00 4.18
384 385 1.216178 GGGTACGCTTTGCCGAGTA 59.784 57.895 2.05 0.00 0.00 2.59
385 386 1.080435 GGGTACGCTTTGCCGAGTAC 61.080 60.000 2.05 0.00 38.80 2.73
388 389 1.125566 GTACGCTTTGCCGAGTACAAC 59.874 52.381 0.00 0.00 39.17 3.32
389 390 0.531090 ACGCTTTGCCGAGTACAACA 60.531 50.000 0.00 0.00 0.00 3.33
390 391 0.110823 CGCTTTGCCGAGTACAACAC 60.111 55.000 0.00 0.00 0.00 3.32
391 392 1.226746 GCTTTGCCGAGTACAACACT 58.773 50.000 0.00 0.00 41.47 3.55
399 400 2.433868 GAGTACAACACTCGGCAGAA 57.566 50.000 0.00 0.00 44.19 3.02
401 402 1.145803 GTACAACACTCGGCAGAACC 58.854 55.000 0.00 0.00 0.00 3.62
403 404 0.108585 ACAACACTCGGCAGAACCAT 59.891 50.000 0.00 0.00 39.03 3.55
404 405 1.238439 CAACACTCGGCAGAACCATT 58.762 50.000 0.00 0.00 39.03 3.16
405 406 1.069022 CAACACTCGGCAGAACCATTG 60.069 52.381 0.00 0.00 39.03 2.82
406 407 1.237285 ACACTCGGCAGAACCATTGC 61.237 55.000 0.00 0.00 39.03 3.56
411 412 3.987404 GCAGAACCATTGCCGAGT 58.013 55.556 0.00 0.00 35.54 4.18
413 414 1.237285 GCAGAACCATTGCCGAGTGT 61.237 55.000 0.00 0.00 35.54 3.55
415 416 1.608590 CAGAACCATTGCCGAGTGTTT 59.391 47.619 0.00 0.00 0.00 2.83
416 417 2.034558 CAGAACCATTGCCGAGTGTTTT 59.965 45.455 0.00 0.00 0.00 2.43
417 418 3.252215 CAGAACCATTGCCGAGTGTTTTA 59.748 43.478 0.00 0.00 0.00 1.52
418 419 3.502211 AGAACCATTGCCGAGTGTTTTAG 59.498 43.478 0.00 0.00 0.00 1.85
420 421 1.472480 CCATTGCCGAGTGTTTTAGGG 59.528 52.381 0.00 0.00 0.00 3.53
421 422 1.135402 CATTGCCGAGTGTTTTAGGGC 60.135 52.381 0.00 0.00 44.00 5.19
422 423 0.891904 TTGCCGAGTGTTTTAGGGCC 60.892 55.000 0.00 0.00 43.09 5.80
423 424 1.002502 GCCGAGTGTTTTAGGGCCT 60.003 57.895 12.58 12.58 37.82 5.19
424 425 0.608308 GCCGAGTGTTTTAGGGCCTT 60.608 55.000 13.45 0.00 37.82 4.35
425 426 1.905637 CCGAGTGTTTTAGGGCCTTT 58.094 50.000 13.45 0.00 0.00 3.11
426 427 1.539827 CCGAGTGTTTTAGGGCCTTTG 59.460 52.381 13.45 0.00 0.00 2.77
457 458 4.614673 GCACTCGGCAAACAAGTG 57.385 55.556 0.00 0.00 43.97 3.16
459 460 0.380378 GCACTCGGCAAACAAGTGAA 59.620 50.000 5.95 0.00 42.37 3.18
460 461 1.001378 GCACTCGGCAAACAAGTGAAT 60.001 47.619 5.95 0.00 42.37 2.57
461 462 2.543653 GCACTCGGCAAACAAGTGAATT 60.544 45.455 5.95 0.00 42.37 2.17
462 463 3.300009 CACTCGGCAAACAAGTGAATTC 58.700 45.455 0.00 0.00 42.37 2.17
464 465 2.293122 CTCGGCAAACAAGTGAATTCCA 59.707 45.455 2.27 0.00 0.00 3.53
467 468 3.252215 CGGCAAACAAGTGAATTCCAGTA 59.748 43.478 2.27 0.00 0.00 2.74
469 470 4.278419 GGCAAACAAGTGAATTCCAGTAGT 59.722 41.667 2.27 0.00 0.00 2.73
473 474 1.726853 AGTGAATTCCAGTAGTGCGC 58.273 50.000 0.00 0.00 0.00 6.09
531 2538 9.543231 AATCTGAATATATCCGGTAGGTTAAGA 57.457 33.333 0.00 0.31 39.05 2.10
535 2542 6.777213 ATATATCCGGTAGGTTAAGAGCTG 57.223 41.667 0.00 0.00 39.05 4.24
541 2548 7.387301 TCCGGTAGGTTAAGAGCTGTAGCTA 62.387 48.000 6.34 0.00 44.91 3.32
629 2639 2.012673 GTCCCGATCTACTGTACGTGT 58.987 52.381 0.00 0.00 0.00 4.49
630 2640 2.011947 TCCCGATCTACTGTACGTGTG 58.988 52.381 0.00 0.00 0.00 3.82
640 2650 3.952931 ACTGTACGTGTGGTATCTCTCT 58.047 45.455 0.00 0.00 32.74 3.10
810 2848 8.893727 AGTTATTTATTCATCCTTTTCACTCGG 58.106 33.333 0.00 0.00 0.00 4.63
884 2926 2.951642 CAAGAACCTGCAGTTTGAAGGA 59.048 45.455 13.81 0.00 46.77 3.36
887 2929 2.736670 ACCTGCAGTTTGAAGGAAGT 57.263 45.000 13.81 0.00 46.77 3.01
888 2930 2.576615 ACCTGCAGTTTGAAGGAAGTC 58.423 47.619 13.81 0.00 46.77 3.01
889 2931 2.092429 ACCTGCAGTTTGAAGGAAGTCA 60.092 45.455 13.81 0.00 46.77 3.41
890 2932 3.152341 CCTGCAGTTTGAAGGAAGTCAT 58.848 45.455 13.81 0.00 46.77 3.06
891 2933 3.571401 CCTGCAGTTTGAAGGAAGTCATT 59.429 43.478 13.81 0.00 46.77 2.57
892 2934 4.761739 CCTGCAGTTTGAAGGAAGTCATTA 59.238 41.667 13.81 0.00 46.77 1.90
893 2935 5.106396 CCTGCAGTTTGAAGGAAGTCATTAG 60.106 44.000 13.81 0.00 46.77 1.73
894 2936 5.376625 TGCAGTTTGAAGGAAGTCATTAGT 58.623 37.500 0.00 0.00 0.00 2.24
1016 3077 1.380785 CAATGGCATCCCAGCTGGT 60.381 57.895 30.63 11.35 46.24 4.00
1017 3078 1.076485 AATGGCATCCCAGCTGGTC 60.076 57.895 30.63 16.05 46.24 4.02
1110 3195 1.481871 TTCCTGATCCTACCGGTGAC 58.518 55.000 19.93 4.39 0.00 3.67
1165 3256 4.351054 CCCCCGTTCAGCAGCCTT 62.351 66.667 0.00 0.00 0.00 4.35
1194 3285 0.253044 TTCCAGGTATGCACTCAGCC 59.747 55.000 0.00 0.00 44.83 4.85
1205 3296 1.270907 CACTCAGCCACTACTCCCTT 58.729 55.000 0.00 0.00 0.00 3.95
1208 3299 0.039180 TCAGCCACTACTCCCTTCGA 59.961 55.000 0.00 0.00 0.00 3.71
1223 3314 7.210873 ACTCCCTTCGATCACAAATATAAGAC 58.789 38.462 0.00 0.00 0.00 3.01
1231 3322 8.714179 TCGATCACAAATATAAGACGTTTTTGT 58.286 29.630 0.00 1.46 40.18 2.83
1256 3347 6.470278 AGGCTAAAATAGACTACCAAAACGT 58.530 36.000 0.00 0.00 44.01 3.99
1257 3348 6.592994 AGGCTAAAATAGACTACCAAAACGTC 59.407 38.462 0.00 0.00 44.01 4.34
1258 3349 6.592994 GGCTAAAATAGACTACCAAAACGTCT 59.407 38.462 0.00 0.00 40.74 4.18
1259 3350 7.118825 GGCTAAAATAGACTACCAAAACGTCTT 59.881 37.037 0.00 0.00 38.77 3.01
1260 3351 9.143631 GCTAAAATAGACTACCAAAACGTCTTA 57.856 33.333 0.00 0.00 38.77 2.10
1268 3359 9.715121 AGACTACCAAAACGTCTTATATTTTGA 57.285 29.630 9.61 0.00 43.07 2.69
1277 3368 7.948278 ACGTCTTATATTTTGATACAGAGGC 57.052 36.000 0.00 0.00 0.00 4.70
1278 3369 7.497595 ACGTCTTATATTTTGATACAGAGGCA 58.502 34.615 0.00 0.00 0.00 4.75
1279 3370 7.985184 ACGTCTTATATTTTGATACAGAGGCAA 59.015 33.333 0.00 0.00 0.00 4.52
1296 3387 6.014012 AGAGGCAATACTTATCTACTCTCCC 58.986 44.000 0.00 0.00 28.63 4.30
1303 3394 4.497516 ACTTATCTACTCTCCCCATGCAT 58.502 43.478 0.00 0.00 0.00 3.96
1404 3496 1.140312 TCTTGAGCACCTCCCAAGTT 58.860 50.000 0.00 0.00 38.61 2.66
1419 3511 6.353082 CCTCCCAAGTTCTAACCACATAGAAT 60.353 42.308 0.62 0.00 42.26 2.40
1500 3592 4.429108 CAGTTTCCCACGACACAAAATTT 58.571 39.130 0.00 0.00 0.00 1.82
1552 3644 2.039084 ACGAAGAATCCTGAAGGCTTGT 59.961 45.455 3.46 0.00 34.44 3.16
1559 3651 5.241728 AGAATCCTGAAGGCTTGTAAAACAC 59.758 40.000 3.46 0.00 34.44 3.32
1565 3657 6.071391 CCTGAAGGCTTGTAAAACACCATTAT 60.071 38.462 3.46 0.00 0.00 1.28
1599 3692 3.567797 GCATCCTCTGCCGAACGC 61.568 66.667 0.00 0.00 45.66 4.84
1616 3709 1.204467 ACGCGGAATTCATTGCCAAAT 59.796 42.857 12.47 0.00 0.00 2.32
1646 3739 0.553333 TCACCACCATGTTGTTCCCA 59.447 50.000 0.00 0.00 0.00 4.37
1667 3760 1.185618 TGAGGTTCGAGTGGTCCCAG 61.186 60.000 0.00 0.00 0.00 4.45
1670 3763 1.374758 GTTCGAGTGGTCCCAGCTG 60.375 63.158 6.78 6.78 0.00 4.24
1689 3782 4.018960 AGCTGATGGGCTATGGGTTTATAG 60.019 45.833 0.00 0.00 41.16 1.31
1691 3784 5.045869 GCTGATGGGCTATGGGTTTATAGTA 60.046 44.000 0.00 0.00 33.99 1.82
1692 3785 6.368779 TGATGGGCTATGGGTTTATAGTAC 57.631 41.667 0.00 0.00 33.99 2.73
1693 3786 6.088819 TGATGGGCTATGGGTTTATAGTACT 58.911 40.000 0.00 0.00 33.99 2.73
1694 3787 7.250454 TGATGGGCTATGGGTTTATAGTACTA 58.750 38.462 4.77 4.77 33.99 1.82
1695 3788 7.399191 TGATGGGCTATGGGTTTATAGTACTAG 59.601 40.741 8.85 0.00 33.99 2.57
1696 3789 6.866621 TGGGCTATGGGTTTATAGTACTAGA 58.133 40.000 8.85 0.12 33.99 2.43
1697 3790 7.484744 TGGGCTATGGGTTTATAGTACTAGAT 58.515 38.462 8.85 0.00 33.99 1.98
1698 3791 8.626473 TGGGCTATGGGTTTATAGTACTAGATA 58.374 37.037 8.85 0.00 33.99 1.98
1699 3792 9.657728 GGGCTATGGGTTTATAGTACTAGATAT 57.342 37.037 8.85 0.00 33.99 1.63
1730 3823 9.912634 AATCTCCTTTTGTGTGTTTTATATGTG 57.087 29.630 0.00 0.00 0.00 3.21
1748 3841 5.998454 ATGTGTTCATTATGTGAGCTAGC 57.002 39.130 6.62 6.62 38.70 3.42
1749 3842 5.089970 TGTGTTCATTATGTGAGCTAGCT 57.910 39.130 19.45 19.45 38.70 3.32
1750 3843 5.111989 TGTGTTCATTATGTGAGCTAGCTC 58.888 41.667 33.47 33.47 43.01 4.09
1751 3844 4.509600 GTGTTCATTATGTGAGCTAGCTCC 59.490 45.833 35.76 27.35 42.09 4.70
1752 3845 4.162131 TGTTCATTATGTGAGCTAGCTCCA 59.838 41.667 35.76 31.09 42.09 3.86
1753 3846 5.118990 GTTCATTATGTGAGCTAGCTCCAA 58.881 41.667 35.76 25.85 42.09 3.53
1754 3847 4.697514 TCATTATGTGAGCTAGCTCCAAC 58.302 43.478 35.76 28.60 42.09 3.77
1755 3848 4.162131 TCATTATGTGAGCTAGCTCCAACA 59.838 41.667 35.76 32.39 42.09 3.33
1756 3849 4.760530 TTATGTGAGCTAGCTCCAACAT 57.239 40.909 34.74 34.74 42.09 2.71
1757 3850 5.869649 TTATGTGAGCTAGCTCCAACATA 57.130 39.130 33.28 33.28 42.09 2.29
1758 3851 3.526931 TGTGAGCTAGCTCCAACATAC 57.473 47.619 35.76 26.72 42.09 2.39
1771 3864 4.513442 TCCAACATACAGCTCCAACATAC 58.487 43.478 0.00 0.00 0.00 2.39
1787 3880 9.995957 CTCCAACATACGAGTATGATTATCTAG 57.004 37.037 24.84 11.36 44.22 2.43
1789 3882 8.740906 CCAACATACGAGTATGATTATCTAGGT 58.259 37.037 24.84 1.19 44.22 3.08
1790 3883 9.561270 CAACATACGAGTATGATTATCTAGGTG 57.439 37.037 24.84 3.41 44.22 4.00
1892 3991 7.530010 TCATTTTGACTGTAAGATTAGCTTGC 58.470 34.615 0.00 0.00 39.38 4.01
1904 4003 5.615289 AGATTAGCTTGCGGATGTCTATTT 58.385 37.500 0.00 0.00 0.00 1.40
1908 4007 4.960938 AGCTTGCGGATGTCTATTTGATA 58.039 39.130 0.00 0.00 0.00 2.15
1949 4048 7.645058 AATTATGGACAAATTACAGTGAGGG 57.355 36.000 0.00 0.00 0.00 4.30
1954 4053 4.698780 GGACAAATTACAGTGAGGGGTTAC 59.301 45.833 0.00 0.00 0.00 2.50
1966 4065 5.187967 AGTGAGGGGTTACTAATGAGAACAG 59.812 44.000 0.00 0.00 0.00 3.16
1977 4076 4.630894 AATGAGAACAGTGTTTTCGCAA 57.369 36.364 18.59 5.10 36.53 4.85
1982 4081 5.054390 AGAACAGTGTTTTCGCAAAAGAA 57.946 34.783 10.45 0.00 0.00 2.52
1992 4091 7.220875 GTGTTTTCGCAAAAGAAAAGAGAGAAT 59.779 33.333 5.29 0.00 46.70 2.40
2023 4122 7.961431 TGTATTAGATGAAATAGATGGAGGGGA 59.039 37.037 0.00 0.00 0.00 4.81
2123 4224 9.839817 GATAAAAAGGGAGTTTCTAGCTATCTT 57.160 33.333 0.00 0.00 0.00 2.40
2192 4293 1.143277 TCTTGCGGGGTTGGACTAAAA 59.857 47.619 0.00 0.00 0.00 1.52
2193 4294 1.957877 CTTGCGGGGTTGGACTAAAAA 59.042 47.619 0.00 0.00 0.00 1.94
2214 4315 6.428385 AAAATGCGAGTGAGATTTAGGAAG 57.572 37.500 0.00 0.00 0.00 3.46
2217 4318 3.190874 GCGAGTGAGATTTAGGAAGTGG 58.809 50.000 0.00 0.00 0.00 4.00
2229 4330 5.784578 TTAGGAAGTGGAAAAAGAAAGGC 57.215 39.130 0.00 0.00 0.00 4.35
2232 4333 4.342378 AGGAAGTGGAAAAAGAAAGGCTTC 59.658 41.667 0.00 0.00 35.24 3.86
2239 4341 5.835280 TGGAAAAAGAAAGGCTTCTCAATCT 59.165 36.000 0.00 0.00 41.23 2.40
2246 4348 5.647225 AGAAAGGCTTCTCAATCTCATCAAC 59.353 40.000 0.00 0.00 37.31 3.18
2250 4352 4.180057 GCTTCTCAATCTCATCAACGAGT 58.820 43.478 0.00 0.00 34.46 4.18
2258 4360 6.975197 TCAATCTCATCAACGAGTTAGACATC 59.025 38.462 0.00 0.00 34.46 3.06
2263 4365 5.869344 TCATCAACGAGTTAGACATCAAAGG 59.131 40.000 0.00 0.00 0.00 3.11
2264 4366 5.462530 TCAACGAGTTAGACATCAAAGGA 57.537 39.130 0.00 0.00 0.00 3.36
2265 4367 6.037786 TCAACGAGTTAGACATCAAAGGAT 57.962 37.500 0.00 0.00 0.00 3.24
2273 4375 9.995003 GAGTTAGACATCAAAGGATAGATGAAT 57.005 33.333 9.17 0.76 43.28 2.57
2291 4393 7.551035 GATGAATACATCCTCTTGATATGGC 57.449 40.000 0.00 0.00 44.89 4.40
2293 4395 5.310331 TGAATACATCCTCTTGATATGGCCA 59.690 40.000 8.56 8.56 30.56 5.36
2298 4400 3.620488 TCCTCTTGATATGGCCAACAAC 58.380 45.455 10.96 0.00 0.00 3.32
2299 4401 3.010027 TCCTCTTGATATGGCCAACAACA 59.990 43.478 10.96 2.56 0.00 3.33
2309 4411 4.582701 TGGCCAACAACATGACTAAAAG 57.417 40.909 0.61 0.00 0.00 2.27
2317 4419 6.360370 ACAACATGACTAAAAGAGAGGCTA 57.640 37.500 0.00 0.00 0.00 3.93
2320 4422 5.983540 ACATGACTAAAAGAGAGGCTAAGG 58.016 41.667 0.00 0.00 0.00 2.69
2326 4428 6.020389 ACTAAAAGAGAGGCTAAGGAGAAGT 58.980 40.000 0.00 0.00 0.00 3.01
2331 4433 2.003301 GAGGCTAAGGAGAAGTTTGCG 58.997 52.381 0.00 0.00 0.00 4.85
2332 4434 1.623811 AGGCTAAGGAGAAGTTTGCGA 59.376 47.619 0.00 0.00 0.00 5.10
2333 4435 2.038557 AGGCTAAGGAGAAGTTTGCGAA 59.961 45.455 0.00 0.00 0.00 4.70
2334 4436 2.416893 GGCTAAGGAGAAGTTTGCGAAG 59.583 50.000 0.00 0.00 0.00 3.79
2353 4455 3.697190 AGCTTCTGAGAAGGGGAGATA 57.303 47.619 22.47 0.00 0.00 1.98
2364 4466 4.723789 AGAAGGGGAGATAAAATGAGCTCA 59.276 41.667 20.79 20.79 33.38 4.26
2369 4471 6.067350 GGGGAGATAAAATGAGCTCAAAGAT 58.933 40.000 22.50 11.70 33.38 2.40
2380 4482 6.214191 TGAGCTCAAAGATCTAAGGTACAG 57.786 41.667 15.67 0.00 30.68 2.74
2388 4490 3.452627 AGATCTAAGGTACAGCAGGTTGG 59.547 47.826 0.00 0.00 0.00 3.77
2393 4495 1.072331 AGGTACAGCAGGTTGGTCAAG 59.928 52.381 0.00 0.00 0.00 3.02
2401 4503 1.697432 CAGGTTGGTCAAGGGACAGTA 59.303 52.381 0.00 0.00 46.17 2.74
2405 4507 4.019591 AGGTTGGTCAAGGGACAGTAATAC 60.020 45.833 0.00 0.00 46.17 1.89
2435 4537 4.742438 TTTCACCTAATCACGAAACTGC 57.258 40.909 0.00 0.00 0.00 4.40
2436 4538 2.695359 TCACCTAATCACGAAACTGCC 58.305 47.619 0.00 0.00 0.00 4.85
2437 4539 1.737793 CACCTAATCACGAAACTGCCC 59.262 52.381 0.00 0.00 0.00 5.36
2438 4540 1.628846 ACCTAATCACGAAACTGCCCT 59.371 47.619 0.00 0.00 0.00 5.19
2439 4541 2.039879 ACCTAATCACGAAACTGCCCTT 59.960 45.455 0.00 0.00 0.00 3.95
2440 4542 3.081804 CCTAATCACGAAACTGCCCTTT 58.918 45.455 0.00 0.00 0.00 3.11
2441 4543 3.119849 CCTAATCACGAAACTGCCCTTTG 60.120 47.826 0.00 0.00 0.00 2.77
2442 4544 0.598065 ATCACGAAACTGCCCTTTGC 59.402 50.000 0.00 0.00 41.77 3.68
2443 4545 1.007387 CACGAAACTGCCCTTTGCC 60.007 57.895 0.00 0.00 40.16 4.52
2444 4546 1.152756 ACGAAACTGCCCTTTGCCT 60.153 52.632 0.00 0.00 40.16 4.75
2445 4547 0.109723 ACGAAACTGCCCTTTGCCTA 59.890 50.000 0.00 0.00 40.16 3.93
2446 4548 0.804989 CGAAACTGCCCTTTGCCTAG 59.195 55.000 0.00 0.00 40.16 3.02
2447 4549 0.528017 GAAACTGCCCTTTGCCTAGC 59.472 55.000 0.00 0.00 40.16 3.42
2448 4550 0.113190 AAACTGCCCTTTGCCTAGCT 59.887 50.000 0.00 0.00 40.16 3.32
2449 4551 0.610232 AACTGCCCTTTGCCTAGCTG 60.610 55.000 0.00 0.00 40.16 4.24
2450 4552 1.751927 CTGCCCTTTGCCTAGCTGG 60.752 63.158 0.00 0.00 40.16 4.85
2451 4553 2.202236 CTGCCCTTTGCCTAGCTGGA 62.202 60.000 0.00 0.00 40.16 3.86
2452 4554 1.228510 GCCCTTTGCCTAGCTGGAT 59.771 57.895 0.00 0.00 38.35 3.41
2453 4555 0.474184 GCCCTTTGCCTAGCTGGATA 59.526 55.000 0.00 0.00 38.35 2.59
2454 4556 1.544314 GCCCTTTGCCTAGCTGGATAG 60.544 57.143 0.00 0.00 38.35 2.08
2465 4567 2.586258 GCTGGATAGCGAGAGTGAAA 57.414 50.000 0.00 0.00 40.67 2.69
2466 4568 2.893637 GCTGGATAGCGAGAGTGAAAA 58.106 47.619 0.00 0.00 40.67 2.29
2467 4569 2.863137 GCTGGATAGCGAGAGTGAAAAG 59.137 50.000 0.00 0.00 40.67 2.27
2468 4570 3.677424 GCTGGATAGCGAGAGTGAAAAGT 60.677 47.826 0.00 0.00 40.67 2.66
2469 4571 4.440250 GCTGGATAGCGAGAGTGAAAAGTA 60.440 45.833 0.00 0.00 40.67 2.24
2470 4572 5.651530 CTGGATAGCGAGAGTGAAAAGTAA 58.348 41.667 0.00 0.00 0.00 2.24
2471 4573 6.222038 TGGATAGCGAGAGTGAAAAGTAAT 57.778 37.500 0.00 0.00 0.00 1.89
2472 4574 6.042777 TGGATAGCGAGAGTGAAAAGTAATG 58.957 40.000 0.00 0.00 0.00 1.90
2473 4575 5.463724 GGATAGCGAGAGTGAAAAGTAATGG 59.536 44.000 0.00 0.00 0.00 3.16
2474 4576 3.003480 AGCGAGAGTGAAAAGTAATGGC 58.997 45.455 0.00 0.00 0.00 4.40
2475 4577 3.003480 GCGAGAGTGAAAAGTAATGGCT 58.997 45.455 0.00 0.00 0.00 4.75
2476 4578 3.437049 GCGAGAGTGAAAAGTAATGGCTT 59.563 43.478 0.00 0.00 0.00 4.35
2477 4579 4.436183 GCGAGAGTGAAAAGTAATGGCTTC 60.436 45.833 0.00 0.00 0.00 3.86
2478 4580 4.093556 CGAGAGTGAAAAGTAATGGCTTCC 59.906 45.833 0.00 0.00 0.00 3.46
2479 4581 4.985538 AGAGTGAAAAGTAATGGCTTCCA 58.014 39.130 0.00 0.00 38.19 3.53
2480 4582 5.385198 AGAGTGAAAAGTAATGGCTTCCAA 58.615 37.500 0.00 0.00 36.95 3.53
2481 4583 5.833131 AGAGTGAAAAGTAATGGCTTCCAAA 59.167 36.000 0.00 0.00 36.95 3.28
2482 4584 5.842907 AGTGAAAAGTAATGGCTTCCAAAC 58.157 37.500 0.00 0.00 36.95 2.93
2483 4585 5.598417 AGTGAAAAGTAATGGCTTCCAAACT 59.402 36.000 0.00 0.00 36.95 2.66
2484 4586 5.691754 GTGAAAAGTAATGGCTTCCAAACTG 59.308 40.000 5.38 0.00 36.95 3.16
2485 4587 4.871933 AAAGTAATGGCTTCCAAACTGG 57.128 40.909 5.38 0.00 36.95 4.00
2486 4588 3.806949 AGTAATGGCTTCCAAACTGGA 57.193 42.857 0.00 0.00 46.61 3.86
2496 4598 3.616956 TCCAAACTGGAGCTACTCATG 57.383 47.619 0.00 0.00 42.67 3.07
2497 4599 2.906389 TCCAAACTGGAGCTACTCATGT 59.094 45.455 0.00 0.00 42.67 3.21
2498 4600 3.055819 TCCAAACTGGAGCTACTCATGTC 60.056 47.826 0.00 0.00 42.67 3.06
2499 4601 2.926200 CAAACTGGAGCTACTCATGTCG 59.074 50.000 0.00 0.00 31.08 4.35
2500 4602 0.457851 ACTGGAGCTACTCATGTCGC 59.542 55.000 0.00 0.00 35.43 5.19
2501 4603 0.457443 CTGGAGCTACTCATGTCGCA 59.543 55.000 0.00 0.00 37.35 5.10
2502 4604 0.457443 TGGAGCTACTCATGTCGCAG 59.543 55.000 0.00 0.00 37.35 5.18
2503 4605 0.249238 GGAGCTACTCATGTCGCAGG 60.249 60.000 0.00 0.00 37.35 4.85
2504 4606 0.249238 GAGCTACTCATGTCGCAGGG 60.249 60.000 0.00 0.00 37.35 4.45
2505 4607 1.227380 GCTACTCATGTCGCAGGGG 60.227 63.158 0.00 0.00 35.31 4.79
2506 4608 1.676678 GCTACTCATGTCGCAGGGGA 61.677 60.000 0.00 0.00 35.31 4.81
2507 4609 0.387202 CTACTCATGTCGCAGGGGAG 59.613 60.000 0.00 0.00 0.00 4.30
2508 4610 1.043116 TACTCATGTCGCAGGGGAGG 61.043 60.000 0.00 0.00 0.00 4.30
2509 4611 3.746949 CTCATGTCGCAGGGGAGGC 62.747 68.421 0.00 0.00 0.00 4.70
2516 4618 4.767255 GCAGGGGAGGCGACTGTG 62.767 72.222 0.00 0.00 44.43 3.66
2517 4619 4.087892 CAGGGGAGGCGACTGTGG 62.088 72.222 0.00 0.00 44.43 4.17
2518 4620 4.316823 AGGGGAGGCGACTGTGGA 62.317 66.667 0.00 0.00 44.43 4.02
2519 4621 3.775654 GGGGAGGCGACTGTGGAG 61.776 72.222 0.00 0.00 44.43 3.86
2520 4622 4.459089 GGGAGGCGACTGTGGAGC 62.459 72.222 0.00 0.00 44.43 4.70
2521 4623 3.386237 GGAGGCGACTGTGGAGCT 61.386 66.667 0.00 0.00 44.43 4.09
2522 4624 2.052690 GGAGGCGACTGTGGAGCTA 61.053 63.158 0.00 0.00 44.43 3.32
2523 4625 1.139947 GAGGCGACTGTGGAGCTAC 59.860 63.158 0.00 0.00 44.43 3.58
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 1.153349 CTTGGGTAGAAGCGGAGGC 60.153 63.158 0.00 0.00 40.37 4.70
16 17 1.153349 GCTTGGGTAGAAGCGGAGG 60.153 63.158 0.00 0.00 39.10 4.30
17 18 4.522971 GCTTGGGTAGAAGCGGAG 57.477 61.111 0.00 0.00 39.10 4.63
21 22 3.195698 CCGCGCTTGGGTAGAAGC 61.196 66.667 5.56 0.00 44.21 3.86
22 23 3.195698 GCCGCGCTTGGGTAGAAG 61.196 66.667 5.56 0.00 0.00 2.85
39 40 4.200283 GAGACGAGGAGGCTGCCG 62.200 72.222 13.96 13.49 39.26 5.69
40 41 4.200283 CGAGACGAGGAGGCTGCC 62.200 72.222 11.65 11.65 39.26 4.85
41 42 4.200283 CCGAGACGAGGAGGCTGC 62.200 72.222 0.00 0.00 39.26 5.25
42 43 4.200283 GCCGAGACGAGGAGGCTG 62.200 72.222 0.00 0.00 45.67 4.85
52 53 4.194720 ATCGTGCCTCGCCGAGAC 62.195 66.667 17.19 4.09 35.55 3.36
53 54 4.193334 CATCGTGCCTCGCCGAGA 62.193 66.667 17.19 0.00 35.55 4.04
86 87 2.435938 TGATTCAAGCCGGCGACC 60.436 61.111 23.20 8.99 0.00 4.79
88 89 1.741401 CAGTGATTCAAGCCGGCGA 60.741 57.895 23.20 10.88 0.00 5.54
89 90 1.970917 GACAGTGATTCAAGCCGGCG 61.971 60.000 23.20 8.11 0.00 6.46
90 91 1.796796 GACAGTGATTCAAGCCGGC 59.203 57.895 21.89 21.89 0.00 6.13
91 92 1.970917 GCGACAGTGATTCAAGCCGG 61.971 60.000 0.00 0.00 0.00 6.13
92 93 1.421485 GCGACAGTGATTCAAGCCG 59.579 57.895 0.00 0.00 0.00 5.52
93 94 0.955428 TGGCGACAGTGATTCAAGCC 60.955 55.000 0.00 2.90 43.05 4.35
94 95 2.543578 TGGCGACAGTGATTCAAGC 58.456 52.632 0.00 0.00 35.01 4.01
109 110 1.882912 TAGGCGTCATCATCAATGGC 58.117 50.000 0.00 0.00 36.58 4.40
110 111 5.217393 CAAAATAGGCGTCATCATCAATGG 58.783 41.667 0.00 0.00 35.94 3.16
111 112 5.684184 CACAAAATAGGCGTCATCATCAATG 59.316 40.000 0.00 0.00 36.65 2.82
112 113 5.734220 GCACAAAATAGGCGTCATCATCAAT 60.734 40.000 0.00 0.00 0.00 2.57
114 115 3.065233 GCACAAAATAGGCGTCATCATCA 59.935 43.478 0.00 0.00 0.00 3.07
115 116 3.313526 AGCACAAAATAGGCGTCATCATC 59.686 43.478 0.00 0.00 0.00 2.92
116 117 3.282021 AGCACAAAATAGGCGTCATCAT 58.718 40.909 0.00 0.00 0.00 2.45
118 119 2.285834 CGAGCACAAAATAGGCGTCATC 60.286 50.000 0.00 0.00 0.00 2.92
119 120 1.665679 CGAGCACAAAATAGGCGTCAT 59.334 47.619 0.00 0.00 0.00 3.06
120 121 1.075542 CGAGCACAAAATAGGCGTCA 58.924 50.000 0.00 0.00 0.00 4.35
121 122 0.247695 GCGAGCACAAAATAGGCGTC 60.248 55.000 0.00 0.00 0.00 5.19
122 123 1.644786 GGCGAGCACAAAATAGGCGT 61.645 55.000 0.00 0.00 0.00 5.68
124 125 1.062525 CGGCGAGCACAAAATAGGC 59.937 57.895 0.00 0.00 0.00 3.93
125 126 1.721487 CCGGCGAGCACAAAATAGG 59.279 57.895 9.30 0.00 0.00 2.57
126 127 1.062525 GCCGGCGAGCACAAAATAG 59.937 57.895 12.58 0.00 0.00 1.73
127 128 2.745785 CGCCGGCGAGCACAAAATA 61.746 57.895 44.86 0.00 42.83 1.40
150 151 4.819761 TCGCCGGACTGCATGAGC 62.820 66.667 5.05 0.00 42.57 4.26
151 152 2.584418 CTCGCCGGACTGCATGAG 60.584 66.667 5.05 0.00 0.00 2.90
157 158 1.586154 AAAAATGCCTCGCCGGACTG 61.586 55.000 5.05 0.00 33.16 3.51
158 159 1.303317 AAAAATGCCTCGCCGGACT 60.303 52.632 5.05 0.00 33.16 3.85
159 160 3.274067 AAAAATGCCTCGCCGGAC 58.726 55.556 5.05 0.00 33.16 4.79
176 177 2.525055 GCTTGTGAGCGTGAACAAAAA 58.475 42.857 0.00 0.00 39.48 1.94
178 179 3.916061 GCTTGTGAGCGTGAACAAA 57.084 47.368 0.00 0.00 39.48 2.83
188 189 1.461127 GCACTCGGTAAAGCTTGTGAG 59.539 52.381 14.56 13.75 0.00 3.51
189 190 1.202592 TGCACTCGGTAAAGCTTGTGA 60.203 47.619 14.56 3.86 0.00 3.58
190 191 1.069906 GTGCACTCGGTAAAGCTTGTG 60.070 52.381 10.32 3.66 0.00 3.33
191 192 1.226746 GTGCACTCGGTAAAGCTTGT 58.773 50.000 10.32 0.00 0.00 3.16
192 193 1.225855 TGTGCACTCGGTAAAGCTTG 58.774 50.000 19.41 0.00 0.00 4.01
193 194 1.806542 CATGTGCACTCGGTAAAGCTT 59.193 47.619 19.41 0.00 0.00 3.74
194 195 1.442769 CATGTGCACTCGGTAAAGCT 58.557 50.000 19.41 0.00 0.00 3.74
195 196 0.179189 GCATGTGCACTCGGTAAAGC 60.179 55.000 19.41 0.89 41.59 3.51
196 197 1.442769 AGCATGTGCACTCGGTAAAG 58.557 50.000 19.41 0.00 45.16 1.85
199 200 1.405463 CTCTAGCATGTGCACTCGGTA 59.595 52.381 19.41 16.38 45.16 4.02
200 201 0.174389 CTCTAGCATGTGCACTCGGT 59.826 55.000 19.41 16.13 45.16 4.69
201 202 0.457443 TCTCTAGCATGTGCACTCGG 59.543 55.000 19.41 8.44 45.16 4.63
203 204 3.186119 GAGTTCTCTAGCATGTGCACTC 58.814 50.000 19.41 7.29 45.16 3.51
204 205 2.416566 CGAGTTCTCTAGCATGTGCACT 60.417 50.000 19.41 0.00 45.16 4.40
205 206 1.923204 CGAGTTCTCTAGCATGTGCAC 59.077 52.381 10.75 10.75 45.16 4.57
207 208 1.565305 CCGAGTTCTCTAGCATGTGC 58.435 55.000 0.00 0.00 42.49 4.57
208 209 1.134995 TGCCGAGTTCTCTAGCATGTG 60.135 52.381 9.28 0.00 31.11 3.21
209 210 1.186200 TGCCGAGTTCTCTAGCATGT 58.814 50.000 9.28 0.00 31.11 3.21
211 212 3.550437 ATTTGCCGAGTTCTCTAGCAT 57.450 42.857 12.62 0.86 34.49 3.79
212 213 3.699538 TCTATTTGCCGAGTTCTCTAGCA 59.300 43.478 9.28 9.28 33.23 3.49
213 214 4.295051 CTCTATTTGCCGAGTTCTCTAGC 58.705 47.826 0.00 2.31 0.00 3.42
216 217 2.480416 CGCTCTATTTGCCGAGTTCTCT 60.480 50.000 0.00 0.00 0.00 3.10
217 218 1.855360 CGCTCTATTTGCCGAGTTCTC 59.145 52.381 0.00 0.00 0.00 2.87
220 221 1.090052 GGCGCTCTATTTGCCGAGTT 61.090 55.000 7.64 0.00 39.30 3.01
221 222 1.521681 GGCGCTCTATTTGCCGAGT 60.522 57.895 7.64 0.00 39.30 4.18
222 223 3.324035 GGCGCTCTATTTGCCGAG 58.676 61.111 7.64 0.00 39.30 4.63
226 227 1.352056 GAACGGGCGCTCTATTTGC 59.648 57.895 5.36 0.00 0.00 3.68
228 229 0.390735 AACGAACGGGCGCTCTATTT 60.391 50.000 5.36 0.00 33.86 1.40
230 231 1.226888 GAACGAACGGGCGCTCTAT 60.227 57.895 5.36 0.00 33.86 1.98
232 233 4.736896 GGAACGAACGGGCGCTCT 62.737 66.667 5.36 0.00 33.86 4.09
246 247 2.646719 CGACGGGACAGAACGGAA 59.353 61.111 0.00 0.00 0.00 4.30
247 248 4.047059 GCGACGGGACAGAACGGA 62.047 66.667 0.00 0.00 0.00 4.69
248 249 3.569049 AAGCGACGGGACAGAACGG 62.569 63.158 0.00 0.00 0.00 4.44
249 250 1.219522 AAAAGCGACGGGACAGAACG 61.220 55.000 0.00 0.00 0.00 3.95
270 271 2.302260 TCAAATCTGGTTCACGGCAAA 58.698 42.857 0.00 0.00 0.00 3.68
272 273 2.198827 ATCAAATCTGGTTCACGGCA 57.801 45.000 0.00 0.00 0.00 5.69
273 274 3.270877 AGTATCAAATCTGGTTCACGGC 58.729 45.455 0.00 0.00 0.00 5.68
274 275 3.551890 CGAGTATCAAATCTGGTTCACGG 59.448 47.826 0.00 0.00 33.17 4.94
276 277 4.504858 ACCGAGTATCAAATCTGGTTCAC 58.495 43.478 0.00 0.00 33.17 3.18
277 278 4.819105 ACCGAGTATCAAATCTGGTTCA 57.181 40.909 0.00 0.00 33.17 3.18
278 279 7.010275 GTCTTTACCGAGTATCAAATCTGGTTC 59.990 40.741 0.00 0.00 33.17 3.62
279 280 6.817140 GTCTTTACCGAGTATCAAATCTGGTT 59.183 38.462 0.00 0.00 33.17 3.67
280 281 6.070995 TGTCTTTACCGAGTATCAAATCTGGT 60.071 38.462 0.00 0.00 33.17 4.00
281 282 6.338146 TGTCTTTACCGAGTATCAAATCTGG 58.662 40.000 0.00 0.00 33.17 3.86
282 283 9.186323 CTATGTCTTTACCGAGTATCAAATCTG 57.814 37.037 0.00 0.00 33.17 2.90
284 285 7.116519 GGCTATGTCTTTACCGAGTATCAAATC 59.883 40.741 0.00 0.00 33.17 2.17
285 286 6.929606 GGCTATGTCTTTACCGAGTATCAAAT 59.070 38.462 0.00 0.00 33.17 2.32
286 287 6.278363 GGCTATGTCTTTACCGAGTATCAAA 58.722 40.000 0.00 0.00 33.17 2.69
287 288 5.506815 CGGCTATGTCTTTACCGAGTATCAA 60.507 44.000 0.00 0.00 46.71 2.57
288 289 4.023450 CGGCTATGTCTTTACCGAGTATCA 60.023 45.833 0.00 0.00 46.71 2.15
289 290 4.474113 CGGCTATGTCTTTACCGAGTATC 58.526 47.826 0.00 0.00 46.71 2.24
290 291 4.500603 CGGCTATGTCTTTACCGAGTAT 57.499 45.455 0.00 0.00 46.71 2.12
291 292 3.976793 CGGCTATGTCTTTACCGAGTA 57.023 47.619 0.00 0.00 46.71 2.59
292 293 2.865343 CGGCTATGTCTTTACCGAGT 57.135 50.000 0.00 0.00 46.71 4.18
295 296 2.460918 CACTCGGCTATGTCTTTACCG 58.539 52.381 0.00 0.00 45.15 4.02
296 297 2.202566 GCACTCGGCTATGTCTTTACC 58.797 52.381 0.00 0.00 40.25 2.85
297 298 2.202566 GGCACTCGGCTATGTCTTTAC 58.797 52.381 0.00 0.00 44.01 2.01
299 300 0.107654 GGGCACTCGGCTATGTCTTT 60.108 55.000 0.00 0.00 44.01 2.52
300 301 1.522569 GGGCACTCGGCTATGTCTT 59.477 57.895 0.00 0.00 44.01 3.01
301 302 2.786495 CGGGCACTCGGCTATGTCT 61.786 63.158 0.00 0.00 44.01 3.41
302 303 2.279517 CGGGCACTCGGCTATGTC 60.280 66.667 0.00 0.00 44.01 3.06
303 304 2.758327 TCGGGCACTCGGCTATGT 60.758 61.111 0.00 0.00 44.01 2.29
304 305 2.279517 GTCGGGCACTCGGCTATG 60.280 66.667 0.00 0.00 44.01 2.23
305 306 3.900892 CGTCGGGCACTCGGCTAT 61.901 66.667 0.00 0.00 44.01 2.97
309 310 2.809601 CTTTCGTCGGGCACTCGG 60.810 66.667 0.00 0.00 0.00 4.63
310 311 2.758770 TTCCTTTCGTCGGGCACTCG 62.759 60.000 0.00 0.00 0.00 4.18
311 312 1.005394 TTCCTTTCGTCGGGCACTC 60.005 57.895 0.00 0.00 0.00 3.51
312 313 1.301479 GTTCCTTTCGTCGGGCACT 60.301 57.895 0.00 0.00 0.00 4.40
313 314 1.289800 GAGTTCCTTTCGTCGGGCAC 61.290 60.000 0.00 0.00 0.00 5.01
314 315 1.005394 GAGTTCCTTTCGTCGGGCA 60.005 57.895 0.00 0.00 0.00 5.36
315 316 2.092882 CGAGTTCCTTTCGTCGGGC 61.093 63.158 0.00 0.00 33.57 6.13
316 317 1.445582 CCGAGTTCCTTTCGTCGGG 60.446 63.158 1.62 0.00 46.68 5.14
317 318 4.164252 CCGAGTTCCTTTCGTCGG 57.836 61.111 0.00 0.00 45.48 4.79
318 319 0.942410 TTGCCGAGTTCCTTTCGTCG 60.942 55.000 0.00 0.00 36.37 5.12
319 320 1.070108 GTTTGCCGAGTTCCTTTCGTC 60.070 52.381 0.00 0.00 36.37 4.20
320 321 0.942252 GTTTGCCGAGTTCCTTTCGT 59.058 50.000 0.00 0.00 36.37 3.85
321 322 0.941542 TGTTTGCCGAGTTCCTTTCG 59.058 50.000 0.00 0.00 37.78 3.46
322 323 2.814336 AGATGTTTGCCGAGTTCCTTTC 59.186 45.455 0.00 0.00 0.00 2.62
324 325 2.154462 CAGATGTTTGCCGAGTTCCTT 58.846 47.619 0.00 0.00 0.00 3.36
325 326 1.072331 ACAGATGTTTGCCGAGTTCCT 59.928 47.619 0.00 0.00 0.00 3.36
336 337 6.813813 TACCCTTCCGGCAAACAGATGTTT 62.814 45.833 5.13 5.13 41.09 2.83
337 338 1.247567 CCTTCCGGCAAACAGATGTT 58.752 50.000 0.00 0.00 40.50 2.71
338 339 0.609131 CCCTTCCGGCAAACAGATGT 60.609 55.000 0.00 0.00 0.00 3.06
339 340 0.609131 ACCCTTCCGGCAAACAGATG 60.609 55.000 0.00 0.00 33.26 2.90
340 341 0.988832 TACCCTTCCGGCAAACAGAT 59.011 50.000 0.00 0.00 33.26 2.90
341 342 0.988832 ATACCCTTCCGGCAAACAGA 59.011 50.000 0.00 0.00 33.26 3.41
342 343 2.702592 TATACCCTTCCGGCAAACAG 57.297 50.000 0.00 0.00 33.26 3.16
344 345 1.674441 GCTTATACCCTTCCGGCAAAC 59.326 52.381 0.00 0.00 33.26 2.93
345 346 1.409101 GGCTTATACCCTTCCGGCAAA 60.409 52.381 0.00 0.00 33.26 3.68
347 348 1.834301 GGCTTATACCCTTCCGGCA 59.166 57.895 0.00 0.00 33.26 5.69
348 349 1.301479 CGGCTTATACCCTTCCGGC 60.301 63.158 0.00 0.00 36.73 6.13
350 351 1.370064 CCCGGCTTATACCCTTCCG 59.630 63.158 0.00 0.00 39.79 4.30
352 353 1.000171 CGTACCCGGCTTATACCCTTC 60.000 57.143 0.00 0.00 0.00 3.46
353 354 1.043022 CGTACCCGGCTTATACCCTT 58.957 55.000 0.00 0.00 0.00 3.95
356 357 2.044452 AGCGTACCCGGCTTATACC 58.956 57.895 0.00 0.00 37.50 2.73
364 365 4.745751 TCGGCAAAGCGTACCCGG 62.746 66.667 10.12 0.00 41.02 5.73
366 367 1.080435 GTACTCGGCAAAGCGTACCC 61.080 60.000 0.00 0.00 0.00 3.69
367 368 0.388907 TGTACTCGGCAAAGCGTACC 60.389 55.000 0.00 0.00 33.17 3.34
368 369 1.125566 GTTGTACTCGGCAAAGCGTAC 59.874 52.381 0.00 0.00 34.37 3.67
370 371 0.531090 TGTTGTACTCGGCAAAGCGT 60.531 50.000 0.00 0.00 0.00 5.07
372 373 1.194772 GAGTGTTGTACTCGGCAAAGC 59.805 52.381 0.00 0.00 45.77 3.51
381 382 1.270147 GGTTCTGCCGAGTGTTGTACT 60.270 52.381 0.00 0.00 44.02 2.73
382 383 1.145803 GGTTCTGCCGAGTGTTGTAC 58.854 55.000 0.00 0.00 0.00 2.90
383 384 0.753867 TGGTTCTGCCGAGTGTTGTA 59.246 50.000 0.00 0.00 41.21 2.41
384 385 0.108585 ATGGTTCTGCCGAGTGTTGT 59.891 50.000 0.00 0.00 41.21 3.32
385 386 1.069022 CAATGGTTCTGCCGAGTGTTG 60.069 52.381 0.00 0.00 41.21 3.33
388 389 1.503542 GCAATGGTTCTGCCGAGTG 59.496 57.895 0.00 0.00 41.21 3.51
389 390 3.987404 GCAATGGTTCTGCCGAGT 58.013 55.556 0.00 0.00 41.21 4.18
394 395 1.237285 ACACTCGGCAATGGTTCTGC 61.237 55.000 0.00 0.00 39.16 4.26
395 396 1.238439 AACACTCGGCAATGGTTCTG 58.762 50.000 0.00 0.00 0.00 3.02
396 397 1.981256 AAACACTCGGCAATGGTTCT 58.019 45.000 0.00 0.00 0.00 3.01
397 398 2.793278 AAAACACTCGGCAATGGTTC 57.207 45.000 0.00 0.00 0.00 3.62
398 399 2.556622 CCTAAAACACTCGGCAATGGTT 59.443 45.455 0.00 0.00 0.00 3.67
399 400 2.159382 CCTAAAACACTCGGCAATGGT 58.841 47.619 0.00 0.00 0.00 3.55
401 402 1.135402 GCCCTAAAACACTCGGCAATG 60.135 52.381 0.00 0.00 39.50 2.82
403 404 0.891904 GGCCCTAAAACACTCGGCAA 60.892 55.000 0.00 0.00 41.58 4.52
404 405 1.302993 GGCCCTAAAACACTCGGCA 60.303 57.895 0.00 0.00 41.58 5.69
405 406 0.608308 AAGGCCCTAAAACACTCGGC 60.608 55.000 0.00 0.00 38.96 5.54
406 407 1.539827 CAAAGGCCCTAAAACACTCGG 59.460 52.381 0.00 0.00 0.00 4.63
407 408 1.068541 GCAAAGGCCCTAAAACACTCG 60.069 52.381 0.00 0.00 0.00 4.18
433 434 1.474478 TGTTTGCCGAGTGCTGAAAAA 59.526 42.857 0.00 0.00 42.00 1.94
434 435 1.098869 TGTTTGCCGAGTGCTGAAAA 58.901 45.000 0.00 0.00 42.00 2.29
436 437 0.662619 CTTGTTTGCCGAGTGCTGAA 59.337 50.000 0.00 0.00 42.00 3.02
437 438 0.463654 ACTTGTTTGCCGAGTGCTGA 60.464 50.000 0.00 0.00 42.00 4.26
439 440 2.024918 CACTTGTTTGCCGAGTGCT 58.975 52.632 0.00 0.00 46.11 4.40
442 443 2.293399 GGAATTCACTTGTTTGCCGAGT 59.707 45.455 7.93 0.00 38.41 4.18
443 444 2.293122 TGGAATTCACTTGTTTGCCGAG 59.707 45.455 7.93 0.00 0.00 4.63
444 445 2.293122 CTGGAATTCACTTGTTTGCCGA 59.707 45.455 7.93 0.00 0.00 5.54
445 446 2.034558 ACTGGAATTCACTTGTTTGCCG 59.965 45.455 7.93 0.00 0.00 5.69
447 448 5.215160 CACTACTGGAATTCACTTGTTTGC 58.785 41.667 7.93 0.00 0.00 3.68
448 449 5.215160 GCACTACTGGAATTCACTTGTTTG 58.785 41.667 7.93 0.00 0.00 2.93
450 451 3.498397 CGCACTACTGGAATTCACTTGTT 59.502 43.478 7.93 0.00 0.00 2.83
451 452 3.067106 CGCACTACTGGAATTCACTTGT 58.933 45.455 7.93 2.85 0.00 3.16
456 457 0.323302 TGGCGCACTACTGGAATTCA 59.677 50.000 10.83 0.00 0.00 2.57
457 458 1.668419 ATGGCGCACTACTGGAATTC 58.332 50.000 10.83 0.00 0.00 2.17
459 460 1.382522 CAATGGCGCACTACTGGAAT 58.617 50.000 10.83 0.00 0.00 3.01
460 461 1.305219 GCAATGGCGCACTACTGGAA 61.305 55.000 10.83 0.00 0.00 3.53
461 462 1.745115 GCAATGGCGCACTACTGGA 60.745 57.895 10.83 0.00 0.00 3.86
462 463 1.985447 CTGCAATGGCGCACTACTGG 61.985 60.000 10.83 0.00 45.35 4.00
464 465 0.606401 AACTGCAATGGCGCACTACT 60.606 50.000 10.83 0.00 45.35 2.57
467 468 0.104671 AAAAACTGCAATGGCGCACT 59.895 45.000 10.83 0.00 45.35 4.40
469 470 0.179089 ACAAAAACTGCAATGGCGCA 60.179 45.000 10.83 0.00 45.35 6.09
473 474 5.814705 TCTGGTAAAACAAAAACTGCAATGG 59.185 36.000 0.00 0.00 0.00 3.16
535 2542 0.936600 GTCTCGGTCGTCCTAGCTAC 59.063 60.000 0.00 0.00 0.00 3.58
541 2548 1.325355 TTCAAAGTCTCGGTCGTCCT 58.675 50.000 0.00 0.00 0.00 3.85
543 2551 3.121544 AGTTTTCAAAGTCTCGGTCGTC 58.878 45.455 0.00 0.00 0.00 4.20
629 2639 0.399091 CCCTGGGCAGAGAGATACCA 60.399 60.000 0.00 0.00 0.00 3.25
630 2640 2.446512 CCCTGGGCAGAGAGATACC 58.553 63.158 0.00 0.00 0.00 2.73
785 2823 7.644157 GCCGAGTGAAAAGGATGAATAAATAAC 59.356 37.037 0.00 0.00 0.00 1.89
810 2848 1.902504 GTACTGCGTGCGTTTAATTGC 59.097 47.619 0.00 0.00 0.00 3.56
884 2926 7.361542 GCTTGATGTGTGATGAACTAATGACTT 60.362 37.037 0.00 0.00 0.00 3.01
887 2929 6.175471 AGCTTGATGTGTGATGAACTAATGA 58.825 36.000 0.00 0.00 0.00 2.57
888 2930 6.432607 AGCTTGATGTGTGATGAACTAATG 57.567 37.500 0.00 0.00 0.00 1.90
889 2931 5.587844 GGAGCTTGATGTGTGATGAACTAAT 59.412 40.000 0.00 0.00 0.00 1.73
890 2932 4.937620 GGAGCTTGATGTGTGATGAACTAA 59.062 41.667 0.00 0.00 0.00 2.24
891 2933 4.223700 AGGAGCTTGATGTGTGATGAACTA 59.776 41.667 0.00 0.00 0.00 2.24
892 2934 3.008813 AGGAGCTTGATGTGTGATGAACT 59.991 43.478 0.00 0.00 0.00 3.01
893 2935 3.341823 AGGAGCTTGATGTGTGATGAAC 58.658 45.455 0.00 0.00 0.00 3.18
894 2936 3.262660 AGAGGAGCTTGATGTGTGATGAA 59.737 43.478 0.00 0.00 0.00 2.57
921 2963 3.004024 AGTGTACGTACGTGGTTCTTG 57.996 47.619 30.25 0.00 0.00 3.02
922 2964 3.815401 AGTAGTGTACGTACGTGGTTCTT 59.185 43.478 30.25 13.01 0.00 2.52
988 3034 2.228059 GGATGCCATTGATCCTCACTG 58.772 52.381 0.00 0.00 37.07 3.66
1016 3077 1.889170 ACAGTCGCTTCATGAGTGAGA 59.111 47.619 4.92 4.88 45.11 3.27
1017 3078 1.991264 CACAGTCGCTTCATGAGTGAG 59.009 52.381 4.92 0.00 45.11 3.51
1110 3195 0.031314 CGTCTGGAGGATGATCACCG 59.969 60.000 0.00 0.00 32.95 4.94
1111 3196 0.249657 GCGTCTGGAGGATGATCACC 60.250 60.000 0.00 1.52 32.95 4.02
1112 3197 0.749649 AGCGTCTGGAGGATGATCAC 59.250 55.000 0.00 0.00 32.95 3.06
1113 3198 1.035923 GAGCGTCTGGAGGATGATCA 58.964 55.000 0.00 0.00 43.54 2.92
1114 3199 1.035923 TGAGCGTCTGGAGGATGATC 58.964 55.000 0.00 0.00 44.12 2.92
1115 3200 1.411977 CTTGAGCGTCTGGAGGATGAT 59.588 52.381 0.00 0.00 32.95 2.45
1116 3201 0.820226 CTTGAGCGTCTGGAGGATGA 59.180 55.000 0.00 0.00 32.95 2.92
1117 3202 0.809241 GCTTGAGCGTCTGGAGGATG 60.809 60.000 0.00 0.00 0.00 3.51
1194 3285 3.868757 TTGTGATCGAAGGGAGTAGTG 57.131 47.619 0.00 0.00 0.00 2.74
1205 3296 8.714179 ACAAAAACGTCTTATATTTGTGATCGA 58.286 29.630 1.79 0.00 41.27 3.59
1223 3314 8.385858 GGTAGTCTATTTTAGCCTACAAAAACG 58.614 37.037 5.44 0.00 38.61 3.60
1231 3322 7.614494 ACGTTTTGGTAGTCTATTTTAGCCTA 58.386 34.615 0.00 0.00 0.00 3.93
1264 3355 9.982651 GTAGATAAGTATTGCCTCTGTATCAAA 57.017 33.333 0.00 0.00 0.00 2.69
1265 3356 9.368416 AGTAGATAAGTATTGCCTCTGTATCAA 57.632 33.333 0.00 0.00 0.00 2.57
1266 3357 8.941995 AGTAGATAAGTATTGCCTCTGTATCA 57.058 34.615 0.00 0.00 0.00 2.15
1267 3358 9.238368 AGAGTAGATAAGTATTGCCTCTGTATC 57.762 37.037 0.00 0.00 0.00 2.24
1268 3359 9.238368 GAGAGTAGATAAGTATTGCCTCTGTAT 57.762 37.037 0.00 0.00 0.00 2.29
1269 3360 7.666388 GGAGAGTAGATAAGTATTGCCTCTGTA 59.334 40.741 0.00 0.00 0.00 2.74
1270 3361 6.492087 GGAGAGTAGATAAGTATTGCCTCTGT 59.508 42.308 0.00 0.00 0.00 3.41
1271 3362 6.071616 GGGAGAGTAGATAAGTATTGCCTCTG 60.072 46.154 0.00 0.00 0.00 3.35
1272 3363 6.014012 GGGAGAGTAGATAAGTATTGCCTCT 58.986 44.000 0.00 0.00 0.00 3.69
1273 3364 5.186215 GGGGAGAGTAGATAAGTATTGCCTC 59.814 48.000 0.00 0.00 0.00 4.70
1274 3365 5.088026 GGGGAGAGTAGATAAGTATTGCCT 58.912 45.833 0.00 0.00 0.00 4.75
1275 3366 4.838986 TGGGGAGAGTAGATAAGTATTGCC 59.161 45.833 0.00 0.00 0.00 4.52
1276 3367 6.402222 CATGGGGAGAGTAGATAAGTATTGC 58.598 44.000 0.00 0.00 0.00 3.56
1277 3368 6.014242 TGCATGGGGAGAGTAGATAAGTATTG 60.014 42.308 0.00 0.00 0.00 1.90
1278 3369 6.084738 TGCATGGGGAGAGTAGATAAGTATT 58.915 40.000 0.00 0.00 0.00 1.89
1279 3370 5.655394 TGCATGGGGAGAGTAGATAAGTAT 58.345 41.667 0.00 0.00 0.00 2.12
1326 3417 0.472471 TTCGGGGGACATCATTAGCC 59.528 55.000 0.00 0.00 0.00 3.93
1404 3496 5.692115 TCAAGGCATTCTATGTGGTTAGA 57.308 39.130 0.00 0.00 0.00 2.10
1419 3511 0.178995 TCAAGTGCACCATCAAGGCA 60.179 50.000 14.63 0.00 43.14 4.75
1500 3592 1.681486 TTGCCGCCGTCAGGATCATA 61.681 55.000 0.00 0.00 41.02 2.15
1559 3651 8.335532 TGCCGGAGAATAAAGAAATATAATGG 57.664 34.615 5.05 0.00 0.00 3.16
1565 3657 6.043243 AGAGGATGCCGGAGAATAAAGAAATA 59.957 38.462 5.05 0.00 0.00 1.40
1594 3687 0.170116 TGGCAATGAATTCCGCGTTC 59.830 50.000 4.92 2.78 0.00 3.95
1597 3690 1.925229 ATTTGGCAATGAATTCCGCG 58.075 45.000 0.00 0.00 0.00 6.46
1599 3692 5.350914 TGCTAAAATTTGGCAATGAATTCCG 59.649 36.000 14.27 0.00 44.47 4.30
1616 3709 6.210385 ACAACATGGTGGTGATATTGCTAAAA 59.790 34.615 16.70 0.00 37.20 1.52
1646 3739 0.613777 GGGACCACTCGAACCTCATT 59.386 55.000 0.00 0.00 0.00 2.57
1667 3760 2.656947 TAAACCCATAGCCCATCAGC 57.343 50.000 0.00 0.00 0.00 4.26
1670 3763 6.622427 AGTACTATAAACCCATAGCCCATC 57.378 41.667 0.00 0.00 32.63 3.51
1694 3787 8.543774 ACACACAAAAGGAGATTCTACATATCT 58.456 33.333 0.00 0.00 35.12 1.98
1695 3788 8.723942 ACACACAAAAGGAGATTCTACATATC 57.276 34.615 0.00 0.00 0.00 1.63
1696 3789 9.520515 AAACACACAAAAGGAGATTCTACATAT 57.479 29.630 0.00 0.00 0.00 1.78
1697 3790 8.918202 AAACACACAAAAGGAGATTCTACATA 57.082 30.769 0.00 0.00 0.00 2.29
1698 3791 7.823745 AAACACACAAAAGGAGATTCTACAT 57.176 32.000 0.00 0.00 0.00 2.29
1699 3792 7.639113 AAAACACACAAAAGGAGATTCTACA 57.361 32.000 0.00 0.00 0.00 2.74
1707 3800 9.180678 GAACACATATAAAACACACAAAAGGAG 57.819 33.333 0.00 0.00 0.00 3.69
1730 3823 4.697514 TGGAGCTAGCTCACATAATGAAC 58.302 43.478 38.32 21.14 44.40 3.18
1742 3835 2.102252 GAGCTGTATGTTGGAGCTAGCT 59.898 50.000 19.45 19.45 43.18 3.32
1743 3836 2.478831 GAGCTGTATGTTGGAGCTAGC 58.521 52.381 6.62 6.62 43.18 3.42
1744 3837 2.432146 TGGAGCTGTATGTTGGAGCTAG 59.568 50.000 0.00 0.00 43.18 3.42
1745 3838 2.466846 TGGAGCTGTATGTTGGAGCTA 58.533 47.619 0.00 0.00 43.18 3.32
1746 3839 1.279496 TGGAGCTGTATGTTGGAGCT 58.721 50.000 0.00 0.00 45.82 4.09
1747 3840 1.740025 GTTGGAGCTGTATGTTGGAGC 59.260 52.381 0.00 0.00 0.00 4.70
1748 3841 3.057969 TGTTGGAGCTGTATGTTGGAG 57.942 47.619 0.00 0.00 0.00 3.86
1749 3842 3.719268 ATGTTGGAGCTGTATGTTGGA 57.281 42.857 0.00 0.00 0.00 3.53
1750 3843 3.309682 CGTATGTTGGAGCTGTATGTTGG 59.690 47.826 0.00 0.00 0.00 3.77
1751 3844 4.180817 TCGTATGTTGGAGCTGTATGTTG 58.819 43.478 0.00 0.00 0.00 3.33
1752 3845 4.081642 ACTCGTATGTTGGAGCTGTATGTT 60.082 41.667 0.00 0.00 33.55 2.71
1753 3846 3.447586 ACTCGTATGTTGGAGCTGTATGT 59.552 43.478 0.00 0.00 33.55 2.29
1754 3847 4.046938 ACTCGTATGTTGGAGCTGTATG 57.953 45.455 0.00 0.00 33.55 2.39
1755 3848 5.535030 TCATACTCGTATGTTGGAGCTGTAT 59.465 40.000 14.69 0.00 42.57 2.29
1756 3849 4.885325 TCATACTCGTATGTTGGAGCTGTA 59.115 41.667 14.69 0.00 42.57 2.74
1757 3850 3.699538 TCATACTCGTATGTTGGAGCTGT 59.300 43.478 14.69 0.00 42.57 4.40
1758 3851 4.307443 TCATACTCGTATGTTGGAGCTG 57.693 45.455 14.69 0.00 42.57 4.24
1771 3864 8.765219 CAAAAACCACCTAGATAATCATACTCG 58.235 37.037 0.00 0.00 0.00 4.18
1787 3880 1.760029 ACATCCACCACAAAAACCACC 59.240 47.619 0.00 0.00 0.00 4.61
1789 3882 4.256920 CAAAACATCCACCACAAAAACCA 58.743 39.130 0.00 0.00 0.00 3.67
1790 3883 4.257731 ACAAAACATCCACCACAAAAACC 58.742 39.130 0.00 0.00 0.00 3.27
1863 3962 9.066892 AGCTAATCTTACAGTCAAAATGAACAA 57.933 29.630 0.00 0.00 0.00 2.83
1892 3991 6.629128 AGAGCAGATATCAAATAGACATCCG 58.371 40.000 5.32 0.00 30.16 4.18
1908 4007 9.238368 GTCCATAATTAGACTAGTAGAGCAGAT 57.762 37.037 3.59 0.00 0.00 2.90
1932 4031 5.557866 AGTAACCCCTCACTGTAATTTGTC 58.442 41.667 0.00 0.00 0.00 3.18
1949 4048 7.288672 CGAAAACACTGTTCTCATTAGTAACC 58.711 38.462 0.00 0.00 0.00 2.85
1954 4053 5.342806 TGCGAAAACACTGTTCTCATTAG 57.657 39.130 0.00 0.00 0.00 1.73
1966 4065 6.027749 TCTCTCTTTTCTTTTGCGAAAACAC 58.972 36.000 0.00 0.00 37.81 3.32
2010 4109 3.515901 GCTAATCGTTCCCCTCCATCTAT 59.484 47.826 0.00 0.00 0.00 1.98
2015 4114 0.326238 AGGCTAATCGTTCCCCTCCA 60.326 55.000 0.00 0.00 0.00 3.86
2023 4122 2.386661 CTGTCACCAGGCTAATCGTT 57.613 50.000 0.00 0.00 34.90 3.85
2046 4146 5.695818 CCAACGGGTACAAGTTCTTTAATG 58.304 41.667 0.00 0.00 0.00 1.90
2155 4256 5.062558 CCGCAAGAAATTTCTTAAATGCCAG 59.937 40.000 28.40 18.19 45.23 4.85
2156 4257 4.928615 CCGCAAGAAATTTCTTAAATGCCA 59.071 37.500 28.40 0.00 45.23 4.92
2168 4269 0.966179 GTCCAACCCCGCAAGAAATT 59.034 50.000 0.00 0.00 43.02 1.82
2170 4271 0.766131 TAGTCCAACCCCGCAAGAAA 59.234 50.000 0.00 0.00 43.02 2.52
2192 4293 5.352569 CACTTCCTAAATCTCACTCGCATTT 59.647 40.000 0.00 0.00 0.00 2.32
2193 4294 4.872691 CACTTCCTAAATCTCACTCGCATT 59.127 41.667 0.00 0.00 0.00 3.56
2194 4295 4.437239 CACTTCCTAAATCTCACTCGCAT 58.563 43.478 0.00 0.00 0.00 4.73
2197 4298 4.720649 TCCACTTCCTAAATCTCACTCG 57.279 45.455 0.00 0.00 0.00 4.18
2214 4315 4.918810 TGAGAAGCCTTTCTTTTTCCAC 57.081 40.909 0.00 0.00 43.63 4.02
2217 4318 6.974965 TGAGATTGAGAAGCCTTTCTTTTTC 58.025 36.000 0.00 0.00 43.63 2.29
2229 4330 7.219917 GTCTAACTCGTTGATGAGATTGAGAAG 59.780 40.741 7.20 0.00 39.35 2.85
2232 4333 6.325596 TGTCTAACTCGTTGATGAGATTGAG 58.674 40.000 7.20 0.00 39.35 3.02
2239 4341 5.869344 CCTTTGATGTCTAACTCGTTGATGA 59.131 40.000 0.00 0.00 0.00 2.92
2246 4348 7.652727 TCATCTATCCTTTGATGTCTAACTCG 58.347 38.462 0.00 0.00 40.46 4.18
2258 4360 9.217278 CAAGAGGATGTATTCATCTATCCTTTG 57.783 37.037 11.56 8.52 44.46 2.77
2265 4367 8.481314 GCCATATCAAGAGGATGTATTCATCTA 58.519 37.037 11.56 0.00 44.46 1.98
2273 4375 4.411869 TGTTGGCCATATCAAGAGGATGTA 59.588 41.667 6.09 0.00 36.72 2.29
2274 4376 3.202818 TGTTGGCCATATCAAGAGGATGT 59.797 43.478 6.09 0.00 36.72 3.06
2275 4377 3.824133 TGTTGGCCATATCAAGAGGATG 58.176 45.455 6.09 0.00 36.72 3.51
2276 4378 4.210331 GTTGTTGGCCATATCAAGAGGAT 58.790 43.478 6.09 0.00 40.14 3.24
2289 4391 4.518970 TCTCTTTTAGTCATGTTGTTGGCC 59.481 41.667 0.00 0.00 0.00 5.36
2291 4393 5.335191 GCCTCTCTTTTAGTCATGTTGTTGG 60.335 44.000 0.00 0.00 0.00 3.77
2293 4395 5.625150 AGCCTCTCTTTTAGTCATGTTGTT 58.375 37.500 0.00 0.00 0.00 2.83
2298 4400 6.097554 TCTCCTTAGCCTCTCTTTTAGTCATG 59.902 42.308 0.00 0.00 0.00 3.07
2299 4401 6.198639 TCTCCTTAGCCTCTCTTTTAGTCAT 58.801 40.000 0.00 0.00 0.00 3.06
2309 4411 3.266636 GCAAACTTCTCCTTAGCCTCTC 58.733 50.000 0.00 0.00 0.00 3.20
2317 4419 2.262423 AGCTTCGCAAACTTCTCCTT 57.738 45.000 0.00 0.00 0.00 3.36
2320 4422 2.802816 TCAGAAGCTTCGCAAACTTCTC 59.197 45.455 20.43 0.00 45.32 2.87
2326 4428 2.146342 CCTTCTCAGAAGCTTCGCAAA 58.854 47.619 20.43 12.32 0.00 3.68
2331 4433 2.183679 TCTCCCCTTCTCAGAAGCTTC 58.816 52.381 19.11 19.11 0.00 3.86
2332 4434 2.334006 TCTCCCCTTCTCAGAAGCTT 57.666 50.000 9.14 0.00 0.00 3.74
2333 4435 2.566708 ATCTCCCCTTCTCAGAAGCT 57.433 50.000 9.14 0.00 0.00 3.74
2334 4436 4.762289 TTTATCTCCCCTTCTCAGAAGC 57.238 45.455 9.14 0.00 0.00 3.86
2335 4437 6.893583 TCATTTTATCTCCCCTTCTCAGAAG 58.106 40.000 7.53 7.53 0.00 2.85
2336 4438 6.633583 GCTCATTTTATCTCCCCTTCTCAGAA 60.634 42.308 0.00 0.00 0.00 3.02
2337 4439 5.163258 GCTCATTTTATCTCCCCTTCTCAGA 60.163 44.000 0.00 0.00 0.00 3.27
2338 4440 5.062528 GCTCATTTTATCTCCCCTTCTCAG 58.937 45.833 0.00 0.00 0.00 3.35
2339 4441 4.723789 AGCTCATTTTATCTCCCCTTCTCA 59.276 41.667 0.00 0.00 0.00 3.27
2353 4455 8.103305 TGTACCTTAGATCTTTGAGCTCATTTT 58.897 33.333 19.04 2.81 28.73 1.82
2364 4466 5.491982 CAACCTGCTGTACCTTAGATCTTT 58.508 41.667 0.00 0.00 0.00 2.52
2369 4471 2.565834 GACCAACCTGCTGTACCTTAGA 59.434 50.000 0.00 0.00 0.00 2.10
2380 4482 0.890996 CTGTCCCTTGACCAACCTGC 60.891 60.000 0.00 0.00 41.01 4.85
2388 4490 5.662674 ACTGAGTATTACTGTCCCTTGAC 57.337 43.478 0.00 0.00 42.12 3.18
2416 4518 2.614481 GGGCAGTTTCGTGATTAGGTGA 60.614 50.000 0.00 0.00 0.00 4.02
2425 4527 4.633980 GCAAAGGGCAGTTTCGTG 57.366 55.556 0.00 0.00 43.97 4.35
2434 4536 0.474184 TATCCAGCTAGGCAAAGGGC 59.526 55.000 0.00 0.00 43.74 5.19
2435 4537 1.544314 GCTATCCAGCTAGGCAAAGGG 60.544 57.143 0.00 0.00 44.93 3.95
2436 4538 1.875576 CGCTATCCAGCTAGGCAAAGG 60.876 57.143 0.00 0.00 46.26 3.11
2437 4539 1.069204 TCGCTATCCAGCTAGGCAAAG 59.931 52.381 0.00 0.00 46.26 2.77
2438 4540 1.069204 CTCGCTATCCAGCTAGGCAAA 59.931 52.381 0.00 0.00 46.26 3.68
2439 4541 0.676184 CTCGCTATCCAGCTAGGCAA 59.324 55.000 0.00 0.00 46.26 4.52
2440 4542 0.178990 TCTCGCTATCCAGCTAGGCA 60.179 55.000 0.00 0.00 46.26 4.75
2441 4543 0.525761 CTCTCGCTATCCAGCTAGGC 59.474 60.000 0.00 0.00 46.26 3.93
2442 4544 1.539388 CACTCTCGCTATCCAGCTAGG 59.461 57.143 0.00 0.00 46.26 3.02
2443 4545 2.499197 TCACTCTCGCTATCCAGCTAG 58.501 52.381 0.00 0.00 46.26 3.42
2444 4546 2.640316 TCACTCTCGCTATCCAGCTA 57.360 50.000 0.00 0.00 46.26 3.32
2445 4547 1.769026 TTCACTCTCGCTATCCAGCT 58.231 50.000 0.00 0.00 46.26 4.24
2446 4548 2.586258 TTTCACTCTCGCTATCCAGC 57.414 50.000 0.00 0.00 44.90 4.85
2447 4549 4.116747 ACTTTTCACTCTCGCTATCCAG 57.883 45.455 0.00 0.00 0.00 3.86
2448 4550 5.654603 TTACTTTTCACTCTCGCTATCCA 57.345 39.130 0.00 0.00 0.00 3.41
2449 4551 5.463724 CCATTACTTTTCACTCTCGCTATCC 59.536 44.000 0.00 0.00 0.00 2.59
2450 4552 5.050702 GCCATTACTTTTCACTCTCGCTATC 60.051 44.000 0.00 0.00 0.00 2.08
2451 4553 4.811557 GCCATTACTTTTCACTCTCGCTAT 59.188 41.667 0.00 0.00 0.00 2.97
2452 4554 4.081642 AGCCATTACTTTTCACTCTCGCTA 60.082 41.667 0.00 0.00 0.00 4.26
2453 4555 3.003480 GCCATTACTTTTCACTCTCGCT 58.997 45.455 0.00 0.00 0.00 4.93
2454 4556 3.003480 AGCCATTACTTTTCACTCTCGC 58.997 45.455 0.00 0.00 0.00 5.03
2455 4557 4.093556 GGAAGCCATTACTTTTCACTCTCG 59.906 45.833 0.00 0.00 0.00 4.04
2456 4558 5.003804 TGGAAGCCATTACTTTTCACTCTC 58.996 41.667 0.00 0.00 0.00 3.20
2457 4559 4.985538 TGGAAGCCATTACTTTTCACTCT 58.014 39.130 0.00 0.00 0.00 3.24
2458 4560 5.705609 TTGGAAGCCATTACTTTTCACTC 57.294 39.130 0.00 0.00 31.53 3.51
2459 4561 5.598417 AGTTTGGAAGCCATTACTTTTCACT 59.402 36.000 0.00 0.00 31.53 3.41
2460 4562 5.691754 CAGTTTGGAAGCCATTACTTTTCAC 59.308 40.000 0.00 0.00 31.53 3.18
2461 4563 5.221422 CCAGTTTGGAAGCCATTACTTTTCA 60.221 40.000 0.00 0.00 40.96 2.69
2462 4564 5.010617 TCCAGTTTGGAAGCCATTACTTTTC 59.989 40.000 0.00 0.00 45.00 2.29
2463 4565 4.898861 TCCAGTTTGGAAGCCATTACTTTT 59.101 37.500 0.00 0.00 45.00 2.27
2464 4566 4.479158 TCCAGTTTGGAAGCCATTACTTT 58.521 39.130 0.00 0.00 45.00 2.66
2465 4567 4.112634 TCCAGTTTGGAAGCCATTACTT 57.887 40.909 0.00 0.00 45.00 2.24
2466 4568 3.806949 TCCAGTTTGGAAGCCATTACT 57.193 42.857 0.00 0.00 45.00 2.24
2476 4578 2.906389 ACATGAGTAGCTCCAGTTTGGA 59.094 45.455 0.00 0.00 45.98 3.53
2477 4579 3.265791 GACATGAGTAGCTCCAGTTTGG 58.734 50.000 0.00 0.00 39.43 3.28
2478 4580 2.926200 CGACATGAGTAGCTCCAGTTTG 59.074 50.000 0.00 0.00 0.00 2.93
2479 4581 2.675317 GCGACATGAGTAGCTCCAGTTT 60.675 50.000 0.00 0.00 42.29 2.66
2480 4582 1.134965 GCGACATGAGTAGCTCCAGTT 60.135 52.381 0.00 0.00 42.29 3.16
2481 4583 0.457851 GCGACATGAGTAGCTCCAGT 59.542 55.000 0.00 0.00 42.29 4.00
2482 4584 0.457443 TGCGACATGAGTAGCTCCAG 59.543 55.000 0.00 0.00 45.29 3.86
2483 4585 0.457443 CTGCGACATGAGTAGCTCCA 59.543 55.000 0.00 0.00 45.29 3.86
2484 4586 0.249238 CCTGCGACATGAGTAGCTCC 60.249 60.000 0.00 0.00 45.29 4.70
2485 4587 0.249238 CCCTGCGACATGAGTAGCTC 60.249 60.000 0.00 0.00 45.29 4.09
2486 4588 1.680522 CCCCTGCGACATGAGTAGCT 61.681 60.000 0.00 0.00 45.29 3.32
2487 4589 1.227380 CCCCTGCGACATGAGTAGC 60.227 63.158 0.00 0.00 45.28 3.58
2488 4590 0.387202 CTCCCCTGCGACATGAGTAG 59.613 60.000 0.00 1.76 0.00 2.57
2489 4591 1.043116 CCTCCCCTGCGACATGAGTA 61.043 60.000 0.00 0.00 0.00 2.59
2490 4592 2.362369 CCTCCCCTGCGACATGAGT 61.362 63.158 0.00 0.00 0.00 3.41
2491 4593 2.503061 CCTCCCCTGCGACATGAG 59.497 66.667 0.00 0.00 0.00 2.90
2492 4594 3.785859 GCCTCCCCTGCGACATGA 61.786 66.667 0.00 0.00 0.00 3.07
2499 4601 4.767255 CACAGTCGCCTCCCCTGC 62.767 72.222 0.00 0.00 0.00 4.85
2500 4602 4.087892 CCACAGTCGCCTCCCCTG 62.088 72.222 0.00 0.00 0.00 4.45
2501 4603 4.316823 TCCACAGTCGCCTCCCCT 62.317 66.667 0.00 0.00 0.00 4.79
2502 4604 3.775654 CTCCACAGTCGCCTCCCC 61.776 72.222 0.00 0.00 0.00 4.81
2503 4605 4.459089 GCTCCACAGTCGCCTCCC 62.459 72.222 0.00 0.00 0.00 4.30
2504 4606 2.052690 TAGCTCCACAGTCGCCTCC 61.053 63.158 0.00 0.00 0.00 4.30
2505 4607 1.139947 GTAGCTCCACAGTCGCCTC 59.860 63.158 0.00 0.00 0.00 4.70
2506 4608 3.289525 GTAGCTCCACAGTCGCCT 58.710 61.111 0.00 0.00 0.00 5.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.