Multiple sequence alignment - TraesCS4D01G345300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G345300 chr4D 100.000 5956 0 0 1 5956 500026560 500020605 0.000000e+00 10999.0
1 TraesCS4D01G345300 chr4D 85.339 457 46 12 5518 5956 500007867 500007414 2.530000e-123 453.0
2 TraesCS4D01G345300 chr4B 91.944 5350 215 86 21 5240 643313951 643308688 0.000000e+00 7293.0
3 TraesCS4D01G345300 chr4B 90.893 560 28 10 5402 5956 643293912 643293371 0.000000e+00 730.0
4 TraesCS4D01G345300 chr4B 89.744 117 10 2 5249 5363 643302059 643301943 1.340000e-31 148.0
5 TraesCS4D01G345300 chr5A 90.584 5172 215 106 197 5273 680845868 680840874 0.000000e+00 6602.0
6 TraesCS4D01G345300 chr5A 96.377 138 5 0 21 158 680846013 680845876 1.670000e-55 228.0
7 TraesCS4D01G345300 chr5A 94.595 37 2 0 2773 2809 502072221 502072257 2.320000e-04 58.4
8 TraesCS4D01G345300 chr1D 75.000 252 52 9 2564 2808 270231111 270231358 8.160000e-19 106.0
9 TraesCS4D01G345300 chr5B 82.353 102 18 0 2725 2826 535700244 535700345 8.220000e-14 89.8
10 TraesCS4D01G345300 chr5B 94.595 37 2 0 2773 2809 476170499 476170535 2.320000e-04 58.4
11 TraesCS4D01G345300 chr2B 77.181 149 28 5 2667 2812 794866991 794866846 1.380000e-11 82.4
12 TraesCS4D01G345300 chr2A 82.353 85 15 0 2728 2812 763313718 763313634 2.300000e-09 75.0
13 TraesCS4D01G345300 chr5D 94.595 37 2 0 2773 2809 396370475 396370511 2.320000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G345300 chr4D 500020605 500026560 5955 True 10999 10999 100.0000 1 5956 1 chr4D.!!$R2 5955
1 TraesCS4D01G345300 chr4B 643308688 643313951 5263 True 7293 7293 91.9440 21 5240 1 chr4B.!!$R3 5219
2 TraesCS4D01G345300 chr4B 643293371 643293912 541 True 730 730 90.8930 5402 5956 1 chr4B.!!$R1 554
3 TraesCS4D01G345300 chr5A 680840874 680846013 5139 True 3415 6602 93.4805 21 5273 2 chr5A.!!$R1 5252

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
799 872 0.179086 ATGTGTGTGTGTGCGTCTCA 60.179 50.0 0.0 0.0 0.00 3.27 F
805 878 0.307453 GTGTGTGCGTCTCATTGCAA 59.693 50.0 0.0 0.0 43.75 4.08 F
1994 2116 0.325933 TGTCTCTGTCCCTGCATTGG 59.674 55.0 0.0 0.0 0.00 3.16 F
2846 3003 1.246649 TCGACAACGGCTTACAGGTA 58.753 50.0 0.0 0.0 40.21 3.08 F
4164 4367 0.391661 GAGCGATCCAGTTGGCTTCA 60.392 55.0 0.0 0.0 35.54 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2708 2865 0.105964 TACCAACTGCACGCTTCTGT 59.894 50.000 0.00 0.0 0.00 3.41 R
2771 2928 2.915659 ACCCAGTCGGTGCGAGAA 60.916 61.111 0.00 0.0 46.09 2.87 R
3514 3690 2.291856 GGAAGTCCTCCACCTCCAG 58.708 63.158 0.00 0.0 44.67 3.86 R
4739 4944 0.249405 CCATCTCTTCTCGCTCAGCC 60.249 60.000 0.00 0.0 0.00 4.85 R
5582 5806 0.311477 GACTCCTCTTCCCGCGTATC 59.689 60.000 4.92 0.0 0.00 2.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.374318 TGGTCTAGCTAGCACCACA 57.626 52.632 27.45 15.41 35.16 4.17
19 20 1.866015 TGGTCTAGCTAGCACCACAT 58.134 50.000 27.45 0.00 35.16 3.21
34 35 1.338973 CCACATCTACATGCATTGGCC 59.661 52.381 0.00 0.00 40.13 5.36
166 176 0.762418 TCAAAGCGAAGTTGGGAGGA 59.238 50.000 0.00 0.00 0.00 3.71
171 181 1.258445 GCGAAGTTGGGAGGAGAGGA 61.258 60.000 0.00 0.00 0.00 3.71
217 227 1.041437 GGGAGGGAATCGAGTACCAG 58.959 60.000 17.98 0.00 0.00 4.00
313 329 4.022413 CCAATGGCATCTCATCTCATCT 57.978 45.455 0.00 0.00 0.00 2.90
414 457 0.895559 CCAGCCAAAGACAAGGGGAC 60.896 60.000 0.00 0.00 0.00 4.46
431 479 4.733988 AGGGGACAAGATTGGGATATTTCT 59.266 41.667 0.00 0.00 0.00 2.52
546 609 3.926616 TGTGAAAGACGAGAAGAATCCC 58.073 45.455 0.00 0.00 0.00 3.85
574 637 5.543507 TGTTTGCACACAAAATAATCCCT 57.456 34.783 2.49 0.00 46.94 4.20
666 733 2.203209 CTCCCTGGGCGCCATTAC 60.203 66.667 30.85 11.60 30.82 1.89
675 742 1.823470 GCGCCATTACCCATCAGCA 60.823 57.895 0.00 0.00 0.00 4.41
704 771 3.773154 GCCTCCTCTCCTCCCCCT 61.773 72.222 0.00 0.00 0.00 4.79
709 776 2.018086 CCTCTCCTCCCCCTCCTCT 61.018 68.421 0.00 0.00 0.00 3.69
729 796 0.600057 TCCTCCTCATGCATCGATCG 59.400 55.000 9.36 9.36 0.00 3.69
736 803 3.172824 CTCATGCATCGATCGATCTCTG 58.827 50.000 27.20 21.55 31.62 3.35
753 822 2.014857 TCTGCTGCTCATCTGAATTGC 58.985 47.619 0.00 0.00 0.00 3.56
793 866 1.298602 TGACTCATGTGTGTGTGTGC 58.701 50.000 4.90 0.00 32.58 4.57
799 872 0.179086 ATGTGTGTGTGTGCGTCTCA 60.179 50.000 0.00 0.00 0.00 3.27
802 875 0.936600 TGTGTGTGTGCGTCTCATTG 59.063 50.000 0.00 0.00 0.00 2.82
803 876 0.384725 GTGTGTGTGCGTCTCATTGC 60.385 55.000 0.00 0.00 0.00 3.56
804 877 0.813210 TGTGTGTGCGTCTCATTGCA 60.813 50.000 0.00 0.00 39.13 4.08
805 878 0.307453 GTGTGTGCGTCTCATTGCAA 59.693 50.000 0.00 0.00 43.75 4.08
806 879 1.069022 GTGTGTGCGTCTCATTGCAAT 60.069 47.619 5.99 5.99 43.75 3.56
852 927 1.353103 CGACGATTCATTGCTGGCC 59.647 57.895 0.00 0.00 0.00 5.36
944 1027 4.277593 CTGCCTAGCTCCGCTCCG 62.278 72.222 6.51 0.00 40.44 4.63
999 1089 5.096443 AGGAAGAGGAAGTTAGCAGATTG 57.904 43.478 0.00 0.00 0.00 2.67
1044 1134 1.802337 GCTTCCGGTTTCACCCAACC 61.802 60.000 0.00 0.00 42.68 3.77
1170 1260 1.212751 GCCAGGTGCGTGATTTTCC 59.787 57.895 0.00 0.00 0.00 3.13
1184 1274 6.422400 GCGTGATTTTCCTCTTCCTAATAGAG 59.578 42.308 0.00 0.00 39.07 2.43
1185 1275 7.493367 CGTGATTTTCCTCTTCCTAATAGAGT 58.507 38.462 0.00 0.00 37.93 3.24
1230 1320 4.202202 GCTCAAGCTAGCTCCTGATTAGAA 60.202 45.833 19.65 0.00 39.50 2.10
1290 1388 1.406069 CCCATCAGAGAACAAGGTCCG 60.406 57.143 0.00 0.00 0.00 4.79
1333 1431 6.264518 TCAACTTCAGTAGAAATTTTGGGGAC 59.735 38.462 0.00 0.00 32.35 4.46
1338 1436 9.139940 CTTCAGTAGAAATTTTGGGGACAAGGG 62.140 44.444 0.00 0.00 41.86 3.95
1358 1456 4.657039 AGGGGATATAAGCGTTCCAAACTA 59.343 41.667 0.00 0.00 0.00 2.24
1468 1572 2.554032 GCACTGCATACACCTTGTTCTT 59.446 45.455 0.00 0.00 0.00 2.52
1568 1673 6.636454 TTCAATTCTTGTACCACTATCCCT 57.364 37.500 0.00 0.00 0.00 4.20
1569 1674 6.235231 TCAATTCTTGTACCACTATCCCTC 57.765 41.667 0.00 0.00 0.00 4.30
1582 1687 1.312884 ATCCCTCCCAAGAAATGCCT 58.687 50.000 0.00 0.00 0.00 4.75
1595 1700 3.056322 AGAAATGCCTGTGCCAATTCTTC 60.056 43.478 0.00 0.00 32.22 2.87
1653 1763 7.814587 TGAGCACTTCATCGTCCTATTATATTG 59.185 37.037 0.00 0.00 0.00 1.90
1654 1764 7.896811 AGCACTTCATCGTCCTATTATATTGA 58.103 34.615 0.00 0.00 0.00 2.57
1655 1765 8.535335 AGCACTTCATCGTCCTATTATATTGAT 58.465 33.333 0.00 0.00 0.00 2.57
1656 1766 8.812329 GCACTTCATCGTCCTATTATATTGATC 58.188 37.037 0.00 0.00 0.00 2.92
1803 1918 2.234414 GTTTAGTGTACCGTCCCCATGA 59.766 50.000 0.00 0.00 0.00 3.07
1836 1956 7.062605 GCGCTCTGTTTGTGTTAACTATACTTA 59.937 37.037 7.22 0.00 0.00 2.24
1842 1962 9.492973 TGTTTGTGTTAACTATACTTAGGAACC 57.507 33.333 7.22 0.00 30.23 3.62
1845 1965 8.426569 TGTGTTAACTATACTTAGGAACCTGT 57.573 34.615 7.22 0.00 30.23 4.00
1994 2116 0.325933 TGTCTCTGTCCCTGCATTGG 59.674 55.000 0.00 0.00 0.00 3.16
2031 2153 5.449177 GGAAAGAAATCCTTTATCACAGCGG 60.449 44.000 0.00 0.00 44.63 5.52
2179 2301 1.987770 CTGAATGCATTGCGTGAAACC 59.012 47.619 18.59 0.00 0.00 3.27
2249 2371 5.584649 TGTTCTTCTTTCGTGAGTGACAATT 59.415 36.000 0.00 0.00 0.00 2.32
2250 2372 6.759356 TGTTCTTCTTTCGTGAGTGACAATTA 59.241 34.615 0.00 0.00 0.00 1.40
2251 2373 7.279090 TGTTCTTCTTTCGTGAGTGACAATTAA 59.721 33.333 0.00 0.00 0.00 1.40
2252 2374 7.962964 TCTTCTTTCGTGAGTGACAATTAAT 57.037 32.000 0.00 0.00 0.00 1.40
2253 2375 9.483916 TTCTTCTTTCGTGAGTGACAATTAATA 57.516 29.630 0.00 0.00 0.00 0.98
2254 2376 8.922676 TCTTCTTTCGTGAGTGACAATTAATAC 58.077 33.333 0.00 0.00 0.00 1.89
2255 2377 7.591006 TCTTTCGTGAGTGACAATTAATACC 57.409 36.000 0.00 0.00 0.00 2.73
2256 2378 7.156000 TCTTTCGTGAGTGACAATTAATACCA 58.844 34.615 0.00 0.00 0.00 3.25
2257 2379 6.961359 TTCGTGAGTGACAATTAATACCAG 57.039 37.500 0.00 0.00 0.00 4.00
2258 2380 6.275494 TCGTGAGTGACAATTAATACCAGA 57.725 37.500 0.00 0.00 0.00 3.86
2259 2381 6.693466 TCGTGAGTGACAATTAATACCAGAA 58.307 36.000 0.00 0.00 0.00 3.02
2260 2382 7.156000 TCGTGAGTGACAATTAATACCAGAAA 58.844 34.615 0.00 0.00 0.00 2.52
2261 2383 7.658167 TCGTGAGTGACAATTAATACCAGAAAA 59.342 33.333 0.00 0.00 0.00 2.29
2262 2384 8.450964 CGTGAGTGACAATTAATACCAGAAAAT 58.549 33.333 0.00 0.00 0.00 1.82
2276 2398 9.573133 AATACCAGAAAATAAATTGAGAAAGCG 57.427 29.630 0.00 0.00 0.00 4.68
2277 2399 7.214467 ACCAGAAAATAAATTGAGAAAGCGA 57.786 32.000 0.00 0.00 0.00 4.93
2278 2400 7.308435 ACCAGAAAATAAATTGAGAAAGCGAG 58.692 34.615 0.00 0.00 0.00 5.03
2279 2401 7.040409 ACCAGAAAATAAATTGAGAAAGCGAGT 60.040 33.333 0.00 0.00 0.00 4.18
2280 2402 7.809806 CCAGAAAATAAATTGAGAAAGCGAGTT 59.190 33.333 0.00 0.00 0.00 3.01
2386 2535 9.390795 CAAGACAAGATAATGCATATAAAGTGC 57.609 33.333 0.00 0.00 42.81 4.40
2409 2558 5.681543 GCTGTCTAGTTTTTCTTTTGAACGG 59.318 40.000 0.00 0.00 38.30 4.44
2478 2633 8.159344 ACAATTAGCTCTAATCATGGTTAAGC 57.841 34.615 17.86 17.86 34.90 3.09
2479 2634 7.995488 ACAATTAGCTCTAATCATGGTTAAGCT 59.005 33.333 25.25 25.25 41.23 3.74
2480 2635 9.494271 CAATTAGCTCTAATCATGGTTAAGCTA 57.506 33.333 23.94 23.94 39.24 3.32
2481 2636 9.717942 AATTAGCTCTAATCATGGTTAAGCTAG 57.282 33.333 25.06 13.30 40.69 3.42
2550 2706 2.840038 AGTGTATGCATGACTTCTCCCA 59.160 45.455 10.16 0.00 0.00 4.37
2560 2716 6.064717 GCATGACTTCTCCCATACCTTTAAT 58.935 40.000 0.00 0.00 0.00 1.40
2562 2718 7.719633 GCATGACTTCTCCCATACCTTTAATTA 59.280 37.037 0.00 0.00 0.00 1.40
2582 2739 6.743575 ATTACAGAAAAGTCATTCCTTCCG 57.256 37.500 0.00 0.00 0.00 4.30
2708 2865 3.004315 GGAAAGACCGCAAAGTGAATTCA 59.996 43.478 3.38 3.38 0.00 2.57
2846 3003 1.246649 TCGACAACGGCTTACAGGTA 58.753 50.000 0.00 0.00 40.21 3.08
2875 3035 6.541641 ACATTACTCCCTACTACAGTTCTACG 59.458 42.308 0.00 0.00 0.00 3.51
2886 3046 2.165167 CAGTTCTACGTACACTGGGGA 58.835 52.381 17.30 0.00 35.28 4.81
3002 3178 2.736721 TCGGATTTTCAAGAAGACAGCG 59.263 45.455 0.00 0.00 0.00 5.18
3032 3208 1.781786 AGATCATGGAGCACTACGGT 58.218 50.000 0.00 0.00 0.00 4.83
3418 3594 9.442047 GGTAGTAATATATTCAGCTCAAATGCT 57.558 33.333 0.00 0.00 45.18 3.79
4090 4293 6.151312 CACGCACTATCCTATACAAGATACCT 59.849 42.308 0.00 0.00 0.00 3.08
4113 4316 9.268282 ACCTCAGAGAATTCAGGTACTTAAATA 57.732 33.333 12.32 0.00 37.50 1.40
4132 4335 9.117145 CTTAAATATTTGGCTGTAACATATGCG 57.883 33.333 11.05 0.00 0.00 4.73
4138 4341 2.146342 GCTGTAACATATGCGCTCCAT 58.854 47.619 9.73 0.00 37.97 3.41
4139 4342 2.549754 GCTGTAACATATGCGCTCCATT 59.450 45.455 9.73 0.00 35.34 3.16
4140 4343 3.745975 GCTGTAACATATGCGCTCCATTA 59.254 43.478 9.73 0.00 35.34 1.90
4141 4344 4.213270 GCTGTAACATATGCGCTCCATTAA 59.787 41.667 9.73 0.00 35.34 1.40
4142 4345 5.106555 GCTGTAACATATGCGCTCCATTAAT 60.107 40.000 9.73 0.00 35.34 1.40
4143 4346 6.568462 GCTGTAACATATGCGCTCCATTAATT 60.568 38.462 9.73 0.00 35.34 1.40
4144 4347 6.667370 TGTAACATATGCGCTCCATTAATTG 58.333 36.000 9.73 0.00 35.34 2.32
4163 4366 1.092345 GGAGCGATCCAGTTGGCTTC 61.092 60.000 16.44 0.00 35.54 3.86
4164 4367 0.391661 GAGCGATCCAGTTGGCTTCA 60.392 55.000 0.00 0.00 35.54 3.02
4328 4533 1.328986 GACTTCGCTCTTGCTATTGGC 59.671 52.381 0.00 0.00 42.22 4.52
4373 4578 2.281276 GACCCCAACGCGTCCTTT 60.281 61.111 14.44 0.00 0.00 3.11
4376 4581 1.674322 CCCCAACGCGTCCTTTGAT 60.674 57.895 14.44 0.00 0.00 2.57
4397 4602 1.135523 GTACGGGAAGGTCGACGTC 59.864 63.158 11.73 5.18 40.38 4.34
4516 4721 2.185350 CGAGGTCAGCAAGGCGAT 59.815 61.111 0.00 0.00 0.00 4.58
4517 4722 1.880340 CGAGGTCAGCAAGGCGATC 60.880 63.158 0.00 0.00 0.00 3.69
4518 4723 1.880340 GAGGTCAGCAAGGCGATCG 60.880 63.158 11.69 11.69 0.00 3.69
4536 4741 4.976731 CGATCGTCGAGAAGTTCCATTATT 59.023 41.667 7.03 0.00 43.74 1.40
4537 4742 6.140786 CGATCGTCGAGAAGTTCCATTATTA 58.859 40.000 7.03 0.00 43.74 0.98
4538 4743 6.802348 CGATCGTCGAGAAGTTCCATTATTAT 59.198 38.462 7.03 0.00 43.74 1.28
4670 4875 1.528076 ATCACCGTTGCAGCACCAA 60.528 52.632 0.00 0.00 0.00 3.67
4673 4878 1.453015 ACCGTTGCAGCACCAAAGA 60.453 52.632 0.00 0.00 0.00 2.52
4674 4879 0.823356 ACCGTTGCAGCACCAAAGAT 60.823 50.000 0.00 0.00 0.00 2.40
4739 4944 3.365265 GCACCCAAGGAAGCCGTG 61.365 66.667 0.00 0.00 32.93 4.94
4766 4974 1.202394 CGAGAAGAGATGGTCAGCAGG 60.202 57.143 0.00 0.00 0.00 4.85
4767 4975 2.106566 GAGAAGAGATGGTCAGCAGGA 58.893 52.381 0.00 0.00 0.00 3.86
4768 4976 2.499289 GAGAAGAGATGGTCAGCAGGAA 59.501 50.000 0.00 0.00 0.00 3.36
4769 4977 2.500910 AGAAGAGATGGTCAGCAGGAAG 59.499 50.000 0.00 0.00 0.00 3.46
4770 4978 2.244486 AGAGATGGTCAGCAGGAAGA 57.756 50.000 0.00 0.00 0.00 2.87
4771 4979 2.544721 AGAGATGGTCAGCAGGAAGAA 58.455 47.619 0.00 0.00 0.00 2.52
4772 4980 2.500910 AGAGATGGTCAGCAGGAAGAAG 59.499 50.000 0.00 0.00 0.00 2.85
4773 4981 1.558756 AGATGGTCAGCAGGAAGAAGG 59.441 52.381 0.00 0.00 0.00 3.46
4774 4982 0.034670 ATGGTCAGCAGGAAGAAGGC 60.035 55.000 0.00 0.00 0.00 4.35
4950 5158 3.443045 CAGGGCCGTGCAATCACC 61.443 66.667 13.37 0.00 40.04 4.02
4988 5196 4.032355 GTCTTTCGCTTCGACTATCTCTG 58.968 47.826 0.00 0.00 34.89 3.35
4989 5197 3.939592 TCTTTCGCTTCGACTATCTCTGA 59.060 43.478 0.00 0.00 34.89 3.27
5094 5310 1.409661 GGTGTGAAACTGGAGGGTGTT 60.410 52.381 0.00 0.00 38.04 3.32
5120 5336 5.245105 CACTATTTGTACGTACGTGCATTG 58.755 41.667 34.08 23.93 40.18 2.82
5233 5452 8.985315 ATTGTATTCAGCATATTTCTTCCTGA 57.015 30.769 0.00 0.00 0.00 3.86
5254 5473 8.887717 TCCTGAAAAATTTAAATGGTGTGTTTG 58.112 29.630 0.39 0.00 0.00 2.93
5273 5492 4.944962 TTGCTTCACACGAATTCCATAG 57.055 40.909 0.00 0.00 0.00 2.23
5274 5493 4.200838 TGCTTCACACGAATTCCATAGA 57.799 40.909 0.00 0.00 0.00 1.98
5275 5494 4.574892 TGCTTCACACGAATTCCATAGAA 58.425 39.130 0.00 0.00 36.15 2.10
5276 5495 5.185454 TGCTTCACACGAATTCCATAGAAT 58.815 37.500 0.00 0.00 44.86 2.40
5290 5509 6.560003 TCCATAGAATTCTGTTCCTTAGCA 57.440 37.500 18.47 0.00 0.00 3.49
5291 5510 7.141758 TCCATAGAATTCTGTTCCTTAGCAT 57.858 36.000 18.47 0.00 0.00 3.79
5292 5511 7.577303 TCCATAGAATTCTGTTCCTTAGCATT 58.423 34.615 18.47 0.00 0.00 3.56
5293 5512 8.713971 TCCATAGAATTCTGTTCCTTAGCATTA 58.286 33.333 18.47 0.00 0.00 1.90
5294 5513 9.512588 CCATAGAATTCTGTTCCTTAGCATTAT 57.487 33.333 18.47 0.00 0.00 1.28
5298 5517 9.466497 AGAATTCTGTTCCTTAGCATTATTTCA 57.534 29.630 7.30 0.00 0.00 2.69
5299 5518 9.508567 GAATTCTGTTCCTTAGCATTATTTCAC 57.491 33.333 0.00 0.00 0.00 3.18
5300 5519 7.994425 TTCTGTTCCTTAGCATTATTTCACA 57.006 32.000 0.00 0.00 0.00 3.58
5301 5520 7.994425 TCTGTTCCTTAGCATTATTTCACAA 57.006 32.000 0.00 0.00 0.00 3.33
5302 5521 8.402798 TCTGTTCCTTAGCATTATTTCACAAA 57.597 30.769 0.00 0.00 0.00 2.83
5303 5522 9.023962 TCTGTTCCTTAGCATTATTTCACAAAT 57.976 29.630 0.00 0.00 34.90 2.32
5314 5533 9.403110 GCATTATTTCACAAATAATAGAGCTGG 57.597 33.333 11.95 2.93 46.80 4.85
5317 5536 6.662414 TTTCACAAATAATAGAGCTGGTCG 57.338 37.500 0.00 0.00 0.00 4.79
5318 5537 5.339008 TCACAAATAATAGAGCTGGTCGT 57.661 39.130 0.00 0.00 0.00 4.34
5319 5538 5.730550 TCACAAATAATAGAGCTGGTCGTT 58.269 37.500 0.00 3.83 0.00 3.85
5320 5539 6.170506 TCACAAATAATAGAGCTGGTCGTTT 58.829 36.000 0.00 2.36 0.00 3.60
5321 5540 6.653320 TCACAAATAATAGAGCTGGTCGTTTT 59.347 34.615 0.00 0.01 0.00 2.43
5322 5541 6.742718 CACAAATAATAGAGCTGGTCGTTTTG 59.257 38.462 0.00 10.11 0.00 2.44
5323 5542 5.485662 AATAATAGAGCTGGTCGTTTTGC 57.514 39.130 0.00 0.00 0.00 3.68
5324 5543 2.770164 ATAGAGCTGGTCGTTTTGCT 57.230 45.000 0.00 0.00 38.59 3.91
5325 5544 2.543777 TAGAGCTGGTCGTTTTGCTT 57.456 45.000 0.00 0.00 35.76 3.91
5326 5545 0.947244 AGAGCTGGTCGTTTTGCTTG 59.053 50.000 0.00 0.00 35.76 4.01
5327 5546 0.661483 GAGCTGGTCGTTTTGCTTGC 60.661 55.000 0.00 0.00 35.76 4.01
5328 5547 2.010817 GCTGGTCGTTTTGCTTGCG 61.011 57.895 0.00 0.00 0.00 4.85
5329 5548 1.370414 CTGGTCGTTTTGCTTGCGG 60.370 57.895 0.00 0.00 0.00 5.69
5330 5549 2.058829 CTGGTCGTTTTGCTTGCGGT 62.059 55.000 0.00 0.00 0.00 5.68
5331 5550 1.065109 GGTCGTTTTGCTTGCGGTT 59.935 52.632 0.00 0.00 0.00 4.44
5332 5551 0.526739 GGTCGTTTTGCTTGCGGTTT 60.527 50.000 0.00 0.00 0.00 3.27
5333 5552 1.273688 GTCGTTTTGCTTGCGGTTTT 58.726 45.000 0.00 0.00 0.00 2.43
5334 5553 1.254313 GTCGTTTTGCTTGCGGTTTTC 59.746 47.619 0.00 0.00 0.00 2.29
5335 5554 0.574922 CGTTTTGCTTGCGGTTTTCC 59.425 50.000 0.00 0.00 0.00 3.13
5336 5555 1.646189 GTTTTGCTTGCGGTTTTCCA 58.354 45.000 0.00 0.00 40.70 3.53
5337 5556 2.003301 GTTTTGCTTGCGGTTTTCCAA 58.997 42.857 0.00 0.00 40.70 3.53
5338 5557 2.386661 TTTGCTTGCGGTTTTCCAAA 57.613 40.000 0.00 0.00 40.70 3.28
5339 5558 1.933247 TTGCTTGCGGTTTTCCAAAG 58.067 45.000 0.00 0.00 40.70 2.77
5340 5559 1.107114 TGCTTGCGGTTTTCCAAAGA 58.893 45.000 0.00 0.00 40.70 2.52
5341 5560 1.478510 TGCTTGCGGTTTTCCAAAGAA 59.521 42.857 0.00 0.00 40.70 2.52
5342 5561 2.093973 TGCTTGCGGTTTTCCAAAGAAA 60.094 40.909 0.00 0.00 40.26 2.52
5343 5562 2.539688 GCTTGCGGTTTTCCAAAGAAAG 59.460 45.455 0.00 0.00 42.78 2.62
5344 5563 2.217429 TGCGGTTTTCCAAAGAAAGC 57.783 45.000 0.00 0.00 42.78 3.51
5345 5564 1.754226 TGCGGTTTTCCAAAGAAAGCT 59.246 42.857 3.05 0.00 42.78 3.74
5346 5565 2.167487 TGCGGTTTTCCAAAGAAAGCTT 59.833 40.909 0.00 0.00 42.78 3.74
5347 5566 2.794910 GCGGTTTTCCAAAGAAAGCTTC 59.205 45.455 0.00 0.00 42.78 3.86
5348 5567 3.381045 CGGTTTTCCAAAGAAAGCTTCC 58.619 45.455 0.00 0.00 42.78 3.46
5349 5568 3.181480 CGGTTTTCCAAAGAAAGCTTCCA 60.181 43.478 0.00 0.00 42.78 3.53
5350 5569 4.501400 CGGTTTTCCAAAGAAAGCTTCCAT 60.501 41.667 0.00 0.00 42.78 3.41
5351 5570 5.368145 GGTTTTCCAAAGAAAGCTTCCATT 58.632 37.500 0.00 0.00 42.78 3.16
5352 5571 5.237127 GGTTTTCCAAAGAAAGCTTCCATTG 59.763 40.000 0.00 5.30 42.78 2.82
5353 5572 5.867903 TTTCCAAAGAAAGCTTCCATTGA 57.132 34.783 15.63 1.39 37.07 2.57
5354 5573 5.458041 TTCCAAAGAAAGCTTCCATTGAG 57.542 39.130 15.63 8.73 31.82 3.02
5355 5574 4.473444 TCCAAAGAAAGCTTCCATTGAGT 58.527 39.130 15.63 0.00 31.82 3.41
5356 5575 4.520492 TCCAAAGAAAGCTTCCATTGAGTC 59.480 41.667 15.63 1.91 31.82 3.36
5357 5576 4.522022 CCAAAGAAAGCTTCCATTGAGTCT 59.478 41.667 15.63 3.97 31.82 3.24
5358 5577 5.707298 CCAAAGAAAGCTTCCATTGAGTCTA 59.293 40.000 15.63 0.00 31.82 2.59
5359 5578 6.207417 CCAAAGAAAGCTTCCATTGAGTCTAA 59.793 38.462 15.63 0.00 31.82 2.10
5360 5579 6.809630 AAGAAAGCTTCCATTGAGTCTAAC 57.190 37.500 0.00 0.00 0.00 2.34
5361 5580 5.249420 AGAAAGCTTCCATTGAGTCTAACC 58.751 41.667 0.00 0.00 0.00 2.85
5362 5581 4.917906 AAGCTTCCATTGAGTCTAACCT 57.082 40.909 0.00 0.00 0.00 3.50
5363 5582 4.917906 AGCTTCCATTGAGTCTAACCTT 57.082 40.909 0.00 0.00 0.00 3.50
5364 5583 4.837972 AGCTTCCATTGAGTCTAACCTTC 58.162 43.478 0.00 0.00 0.00 3.46
5365 5584 4.534103 AGCTTCCATTGAGTCTAACCTTCT 59.466 41.667 0.00 0.00 0.00 2.85
5366 5585 5.013599 AGCTTCCATTGAGTCTAACCTTCTT 59.986 40.000 0.00 0.00 0.00 2.52
5367 5586 5.707764 GCTTCCATTGAGTCTAACCTTCTTT 59.292 40.000 0.00 0.00 0.00 2.52
5368 5587 6.207614 GCTTCCATTGAGTCTAACCTTCTTTT 59.792 38.462 0.00 0.00 0.00 2.27
5369 5588 7.510549 TTCCATTGAGTCTAACCTTCTTTTG 57.489 36.000 0.00 0.00 0.00 2.44
5370 5589 6.601332 TCCATTGAGTCTAACCTTCTTTTGT 58.399 36.000 0.00 0.00 0.00 2.83
5371 5590 6.710744 TCCATTGAGTCTAACCTTCTTTTGTC 59.289 38.462 0.00 0.00 0.00 3.18
5372 5591 6.712547 CCATTGAGTCTAACCTTCTTTTGTCT 59.287 38.462 0.00 0.00 0.00 3.41
5373 5592 7.095017 CCATTGAGTCTAACCTTCTTTTGTCTC 60.095 40.741 0.00 0.00 0.00 3.36
5374 5593 5.855045 TGAGTCTAACCTTCTTTTGTCTCC 58.145 41.667 0.00 0.00 0.00 3.71
5375 5594 5.365605 TGAGTCTAACCTTCTTTTGTCTCCA 59.634 40.000 0.00 0.00 0.00 3.86
5376 5595 6.043243 TGAGTCTAACCTTCTTTTGTCTCCAT 59.957 38.462 0.00 0.00 0.00 3.41
5377 5596 6.234177 AGTCTAACCTTCTTTTGTCTCCATG 58.766 40.000 0.00 0.00 0.00 3.66
5378 5597 6.043243 AGTCTAACCTTCTTTTGTCTCCATGA 59.957 38.462 0.00 0.00 0.00 3.07
5379 5598 6.710744 GTCTAACCTTCTTTTGTCTCCATGAA 59.289 38.462 0.00 0.00 0.00 2.57
5380 5599 7.228706 GTCTAACCTTCTTTTGTCTCCATGAAA 59.771 37.037 0.00 0.00 0.00 2.69
5381 5600 6.790232 AACCTTCTTTTGTCTCCATGAAAA 57.210 33.333 0.00 0.00 0.00 2.29
5382 5601 6.149129 ACCTTCTTTTGTCTCCATGAAAAC 57.851 37.500 0.00 0.00 0.00 2.43
5383 5602 5.893824 ACCTTCTTTTGTCTCCATGAAAACT 59.106 36.000 0.00 0.00 0.00 2.66
5384 5603 7.060421 ACCTTCTTTTGTCTCCATGAAAACTA 58.940 34.615 0.00 0.00 0.00 2.24
5385 5604 7.725844 ACCTTCTTTTGTCTCCATGAAAACTAT 59.274 33.333 0.00 0.00 0.00 2.12
5386 5605 8.025445 CCTTCTTTTGTCTCCATGAAAACTATG 58.975 37.037 0.00 0.00 0.00 2.23
5387 5606 6.913170 TCTTTTGTCTCCATGAAAACTATGC 58.087 36.000 0.00 0.00 0.00 3.14
5388 5607 5.643379 TTTGTCTCCATGAAAACTATGCC 57.357 39.130 0.00 0.00 0.00 4.40
5389 5608 4.299586 TGTCTCCATGAAAACTATGCCA 57.700 40.909 0.00 0.00 0.00 4.92
5390 5609 4.858850 TGTCTCCATGAAAACTATGCCAT 58.141 39.130 0.00 0.00 0.00 4.40
5391 5610 4.883585 TGTCTCCATGAAAACTATGCCATC 59.116 41.667 0.00 0.00 0.00 3.51
5392 5611 4.883585 GTCTCCATGAAAACTATGCCATCA 59.116 41.667 0.00 0.00 0.00 3.07
5393 5612 4.883585 TCTCCATGAAAACTATGCCATCAC 59.116 41.667 0.00 0.00 0.00 3.06
5394 5613 3.953612 TCCATGAAAACTATGCCATCACC 59.046 43.478 0.00 0.00 0.00 4.02
5395 5614 3.956199 CCATGAAAACTATGCCATCACCT 59.044 43.478 0.00 0.00 0.00 4.00
5396 5615 5.104151 TCCATGAAAACTATGCCATCACCTA 60.104 40.000 0.00 0.00 0.00 3.08
5397 5616 5.240183 CCATGAAAACTATGCCATCACCTAG 59.760 44.000 0.00 0.00 0.00 3.02
5398 5617 4.780815 TGAAAACTATGCCATCACCTAGG 58.219 43.478 7.41 7.41 0.00 3.02
5406 5625 1.834263 GCCATCACCTAGGCCTATAGG 59.166 57.143 18.68 18.68 46.70 2.57
5428 5648 7.219484 AGGAAGTTTCTACATTTTCATGGTG 57.781 36.000 0.00 0.00 34.27 4.17
5477 5700 3.545703 AGGGTCTCTTTAATTCGCATGG 58.454 45.455 0.00 0.00 0.00 3.66
5575 5799 5.343307 AAAACAGGAATCTGCAAAGTTGT 57.657 34.783 0.00 0.00 44.59 3.32
5576 5800 3.996150 ACAGGAATCTGCAAAGTTGTG 57.004 42.857 0.00 0.00 44.59 3.33
5577 5801 3.290710 ACAGGAATCTGCAAAGTTGTGT 58.709 40.909 0.00 0.00 44.59 3.72
5578 5802 3.067180 ACAGGAATCTGCAAAGTTGTGTG 59.933 43.478 0.00 0.00 44.59 3.82
5579 5803 3.067180 CAGGAATCTGCAAAGTTGTGTGT 59.933 43.478 0.00 0.00 33.86 3.72
5580 5804 3.701040 AGGAATCTGCAAAGTTGTGTGTT 59.299 39.130 0.00 0.00 0.00 3.32
5581 5805 4.160252 AGGAATCTGCAAAGTTGTGTGTTT 59.840 37.500 0.00 0.00 0.00 2.83
5582 5806 4.268405 GGAATCTGCAAAGTTGTGTGTTTG 59.732 41.667 0.00 0.00 36.84 2.93
5583 5807 4.717233 ATCTGCAAAGTTGTGTGTTTGA 57.283 36.364 0.00 0.00 35.99 2.69
5584 5808 4.717233 TCTGCAAAGTTGTGTGTTTGAT 57.283 36.364 0.00 0.00 35.99 2.57
5585 5809 5.826601 TCTGCAAAGTTGTGTGTTTGATA 57.173 34.783 0.00 0.00 35.99 2.15
5586 5810 5.577835 TCTGCAAAGTTGTGTGTTTGATAC 58.422 37.500 0.00 0.00 35.99 2.24
5587 5811 4.346970 TGCAAAGTTGTGTGTTTGATACG 58.653 39.130 0.00 0.00 35.99 3.06
5588 5812 3.179599 GCAAAGTTGTGTGTTTGATACGC 59.820 43.478 0.00 0.00 35.99 4.42
5589 5813 2.941891 AGTTGTGTGTTTGATACGCG 57.058 45.000 3.53 3.53 40.21 6.01
5599 5823 0.744874 TTGATACGCGGGAAGAGGAG 59.255 55.000 12.47 0.00 0.00 3.69
5622 5846 9.886132 GGAGTCCTAAAAGACATAGTCAAATTA 57.114 33.333 0.41 0.00 39.34 1.40
5657 5881 7.062956 GCACATGCAAAGGTAAAATTAGGTTAC 59.937 37.037 0.00 0.00 41.59 2.50
5659 5883 8.643324 ACATGCAAAGGTAAAATTAGGTTACAA 58.357 29.630 0.00 0.00 33.86 2.41
5660 5884 8.921670 CATGCAAAGGTAAAATTAGGTTACAAC 58.078 33.333 0.00 0.00 33.86 3.32
5693 5917 1.734655 TGGGCTCTCCTTGTTCTTCT 58.265 50.000 0.00 0.00 36.20 2.85
5696 5920 1.809547 GGCTCTCCTTGTTCTTCTTGC 59.190 52.381 0.00 0.00 0.00 4.01
5700 5924 4.880696 GCTCTCCTTGTTCTTCTTGCATAT 59.119 41.667 0.00 0.00 0.00 1.78
5701 5925 5.356470 GCTCTCCTTGTTCTTCTTGCATATT 59.644 40.000 0.00 0.00 0.00 1.28
5702 5926 6.677431 GCTCTCCTTGTTCTTCTTGCATATTG 60.677 42.308 0.00 0.00 0.00 1.90
5718 5942 8.995027 TTGCATATTGATGTAATAAGGAGGTT 57.005 30.769 0.00 0.00 33.30 3.50
5737 5961 4.587262 AGGTTTGGTTGGACTGTAAAATCC 59.413 41.667 0.00 0.00 35.37 3.01
5742 5966 6.147437 TGGTTGGACTGTAAAATCCCTTAT 57.853 37.500 0.00 0.00 33.69 1.73
5759 5983 6.252995 TCCCTTATGTTTTGCCTATGAAACT 58.747 36.000 0.00 0.00 36.84 2.66
5814 6038 8.827832 TTCCTTTGAATCAAATGGATGACTAT 57.172 30.769 19.80 0.00 36.02 2.12
5832 6056 4.908736 ACTATCACATCGCAAATTTTCCG 58.091 39.130 0.00 0.00 0.00 4.30
5899 6123 7.482654 TTCTCAAATCATATGGTTCGTCATC 57.517 36.000 0.66 0.00 0.00 2.92
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.757118 GATGTGGTGCTAGCTAGACCA 59.243 52.381 27.45 27.45 37.43 4.02
1 2 2.035632 AGATGTGGTGCTAGCTAGACC 58.964 52.381 25.15 24.64 0.00 3.85
2 3 3.632604 TGTAGATGTGGTGCTAGCTAGAC 59.367 47.826 25.15 17.58 0.00 2.59
3 4 3.898482 TGTAGATGTGGTGCTAGCTAGA 58.102 45.455 25.15 6.86 0.00 2.43
4 5 4.554292 CATGTAGATGTGGTGCTAGCTAG 58.446 47.826 16.84 16.84 0.00 3.42
5 6 3.243873 GCATGTAGATGTGGTGCTAGCTA 60.244 47.826 17.23 0.00 33.25 3.32
6 7 2.484417 GCATGTAGATGTGGTGCTAGCT 60.484 50.000 17.23 0.00 33.25 3.32
7 8 1.869767 GCATGTAGATGTGGTGCTAGC 59.130 52.381 8.10 8.10 33.25 3.42
8 9 3.183793 TGCATGTAGATGTGGTGCTAG 57.816 47.619 1.37 0.00 36.78 3.42
9 10 3.843893 ATGCATGTAGATGTGGTGCTA 57.156 42.857 0.00 0.00 36.78 3.49
10 11 2.686405 CAATGCATGTAGATGTGGTGCT 59.314 45.455 0.00 0.00 36.78 4.40
11 12 2.223641 CCAATGCATGTAGATGTGGTGC 60.224 50.000 0.00 0.00 36.39 5.01
12 13 2.223641 GCCAATGCATGTAGATGTGGTG 60.224 50.000 11.86 0.00 37.47 4.17
13 14 2.026641 GCCAATGCATGTAGATGTGGT 58.973 47.619 11.86 0.00 37.47 4.16
14 15 1.338973 GGCCAATGCATGTAGATGTGG 59.661 52.381 0.00 3.09 40.13 4.17
15 16 1.002142 CGGCCAATGCATGTAGATGTG 60.002 52.381 2.24 0.00 40.13 3.21
16 17 1.311859 CGGCCAATGCATGTAGATGT 58.688 50.000 2.24 0.00 40.13 3.06
17 18 0.039798 GCGGCCAATGCATGTAGATG 60.040 55.000 2.24 0.00 40.13 2.90
18 19 0.179009 AGCGGCCAATGCATGTAGAT 60.179 50.000 2.24 0.00 40.13 1.98
19 20 0.467804 TAGCGGCCAATGCATGTAGA 59.532 50.000 2.24 0.00 40.13 2.59
177 187 2.578664 CTTTTTCCATGCCCGGCC 59.421 61.111 7.03 0.00 0.00 6.13
431 479 3.636300 GCATGGCTTTTGTGTATGGGATA 59.364 43.478 0.00 0.00 0.00 2.59
546 609 1.344458 TTTGTGTGCAAACAACGCTG 58.656 45.000 22.15 0.00 39.70 5.18
666 733 2.043652 CCTTGGGGTGCTGATGGG 60.044 66.667 0.00 0.00 0.00 4.00
704 771 2.045524 GATGCATGAGGAGGAAGAGGA 58.954 52.381 2.46 0.00 0.00 3.71
709 776 1.000171 CGATCGATGCATGAGGAGGAA 60.000 52.381 10.26 0.00 0.00 3.36
729 796 3.455990 TTCAGATGAGCAGCAGAGATC 57.544 47.619 0.00 0.00 0.00 2.75
736 803 2.479730 CCAAGCAATTCAGATGAGCAGC 60.480 50.000 0.00 0.00 0.00 5.25
753 822 9.092876 GAGTCATCATAGAAAGTAGAAACCAAG 57.907 37.037 0.00 0.00 0.00 3.61
802 875 5.671742 AATGTACAAAACCTGCAAATTGC 57.328 34.783 11.58 11.58 45.29 3.56
803 876 7.014092 ACAAATGTACAAAACCTGCAAATTG 57.986 32.000 0.00 0.00 0.00 2.32
804 877 7.042119 GCTACAAATGTACAAAACCTGCAAATT 60.042 33.333 0.00 0.00 0.00 1.82
805 878 6.423604 GCTACAAATGTACAAAACCTGCAAAT 59.576 34.615 0.00 0.00 0.00 2.32
806 879 5.751028 GCTACAAATGTACAAAACCTGCAAA 59.249 36.000 0.00 0.00 0.00 3.68
871 946 4.982701 GCCACACCAGCCCTGCTT 62.983 66.667 0.00 0.00 36.40 3.91
944 1027 1.345176 CGCAAAAGGATCGACGCTC 59.655 57.895 0.00 0.00 0.00 5.03
999 1089 4.148825 AGACTCACCGGCGCCATC 62.149 66.667 28.98 13.03 0.00 3.51
1044 1134 0.950836 AGATGATGAGCTCCTCGTCG 59.049 55.000 26.01 0.00 46.21 5.12
1165 1255 9.284968 CAAACAACTCTATTAGGAAGAGGAAAA 57.715 33.333 5.21 0.00 43.98 2.29
1207 1297 2.618442 AATCAGGAGCTAGCTTGAGC 57.382 50.000 20.42 5.57 43.19 4.26
1208 1298 5.528043 TTCTAATCAGGAGCTAGCTTGAG 57.472 43.478 20.42 11.51 0.00 3.02
1209 1299 7.789202 ATATTCTAATCAGGAGCTAGCTTGA 57.211 36.000 20.42 19.55 0.00 3.02
1210 1300 8.845413 AAATATTCTAATCAGGAGCTAGCTTG 57.155 34.615 20.42 14.45 0.00 4.01
1211 1301 8.654997 TGAAATATTCTAATCAGGAGCTAGCTT 58.345 33.333 20.42 3.89 0.00 3.74
1230 1320 7.843760 TGGACATAGGGTTTTGGATTGAAATAT 59.156 33.333 0.00 0.00 0.00 1.28
1251 1341 3.010027 TGGGAATTAACTGCTGATGGACA 59.990 43.478 0.00 0.00 0.00 4.02
1290 1388 2.805845 TGATCGGAAAGTTAGCTACGC 58.194 47.619 0.00 0.00 0.00 4.42
1300 1398 7.602517 ATTTCTACTGAAGTTGATCGGAAAG 57.397 36.000 0.00 0.00 33.28 2.62
1303 1401 7.094805 CCAAAATTTCTACTGAAGTTGATCGGA 60.095 37.037 0.00 0.00 33.38 4.55
1304 1402 7.023575 CCAAAATTTCTACTGAAGTTGATCGG 58.976 38.462 0.00 0.00 33.38 4.18
1333 1431 3.485463 TGGAACGCTTATATCCCCTTG 57.515 47.619 0.00 0.00 32.01 3.61
1338 1436 5.054477 TGCTAGTTTGGAACGCTTATATCC 58.946 41.667 0.00 0.00 36.23 2.59
1343 1441 3.396260 ACTGCTAGTTTGGAACGCTTA 57.604 42.857 0.00 0.00 36.23 3.09
1378 1480 7.978982 TCAAACAGCTATCTATCAAAAAGAGC 58.021 34.615 0.00 0.00 0.00 4.09
1386 1488 9.755804 CAGAGTAATTCAAACAGCTATCTATCA 57.244 33.333 0.00 0.00 0.00 2.15
1387 1489 9.757227 ACAGAGTAATTCAAACAGCTATCTATC 57.243 33.333 0.00 0.00 0.00 2.08
1468 1572 1.414919 ACGTGTAGGTGCTTTCCTTGA 59.585 47.619 0.00 0.00 38.86 3.02
1568 1673 0.899717 GGCACAGGCATTTCTTGGGA 60.900 55.000 0.00 0.00 43.71 4.37
1569 1674 1.186917 TGGCACAGGCATTTCTTGGG 61.187 55.000 0.00 0.00 43.71 4.12
1582 1687 3.831323 TCTTTCCTGAAGAATTGGCACA 58.169 40.909 0.00 0.00 41.34 4.57
1595 1700 7.115414 AGGGAACTTCTGATTATTCTTTCCTG 58.885 38.462 0.00 0.00 37.44 3.86
1653 1763 9.740710 ACAAGGGCCAGTTAATATTATTAGATC 57.259 33.333 6.18 0.00 0.00 2.75
1655 1765 9.569122 GAACAAGGGCCAGTTAATATTATTAGA 57.431 33.333 13.40 0.00 0.00 2.10
1656 1766 9.349713 TGAACAAGGGCCAGTTAATATTATTAG 57.650 33.333 13.40 0.00 0.00 1.73
1657 1767 9.702253 TTGAACAAGGGCCAGTTAATATTATTA 57.298 29.630 13.40 0.00 0.00 0.98
1658 1768 8.602472 TTGAACAAGGGCCAGTTAATATTATT 57.398 30.769 13.40 0.00 0.00 1.40
1659 1769 8.641541 CATTGAACAAGGGCCAGTTAATATTAT 58.358 33.333 13.40 0.00 0.00 1.28
1723 1834 9.548631 TTTATGGGTGGAAACCAAATATTCTAA 57.451 29.630 0.00 0.00 42.17 2.10
1777 1890 4.644685 TGGGGACGGTACACTAAACTATAC 59.355 45.833 0.00 0.00 0.00 1.47
1803 1918 2.289694 ACACAAACAGAGCGCTAGGATT 60.290 45.455 11.50 3.36 0.00 3.01
1836 1956 7.074653 TGTTTGAAAGTAGATACAGGTTCCT 57.925 36.000 0.00 0.00 0.00 3.36
1994 2116 5.105716 GGATTTCTTTCCCTTTCAAGTAGCC 60.106 44.000 0.00 0.00 0.00 3.93
2031 2153 9.750125 AAAATATATAGGCTTTAGCTTTGTTGC 57.250 29.630 0.00 0.00 41.70 4.17
2221 2343 6.093495 TGTCACTCACGAAAGAAGAACAAATT 59.907 34.615 0.00 0.00 0.00 1.82
2222 2344 5.584649 TGTCACTCACGAAAGAAGAACAAAT 59.415 36.000 0.00 0.00 0.00 2.32
2236 2358 6.961359 TTCTGGTATTAATTGTCACTCACG 57.039 37.500 0.00 0.00 0.00 4.35
2250 2372 9.573133 CGCTTTCTCAATTTATTTTCTGGTATT 57.427 29.630 0.00 0.00 0.00 1.89
2251 2373 8.956426 TCGCTTTCTCAATTTATTTTCTGGTAT 58.044 29.630 0.00 0.00 0.00 2.73
2252 2374 8.330466 TCGCTTTCTCAATTTATTTTCTGGTA 57.670 30.769 0.00 0.00 0.00 3.25
2253 2375 7.040409 ACTCGCTTTCTCAATTTATTTTCTGGT 60.040 33.333 0.00 0.00 0.00 4.00
2254 2376 7.308435 ACTCGCTTTCTCAATTTATTTTCTGG 58.692 34.615 0.00 0.00 0.00 3.86
2255 2377 8.633408 CAACTCGCTTTCTCAATTTATTTTCTG 58.367 33.333 0.00 0.00 0.00 3.02
2256 2378 8.567948 TCAACTCGCTTTCTCAATTTATTTTCT 58.432 29.630 0.00 0.00 0.00 2.52
2257 2379 8.728088 TCAACTCGCTTTCTCAATTTATTTTC 57.272 30.769 0.00 0.00 0.00 2.29
2258 2380 9.528018 TTTCAACTCGCTTTCTCAATTTATTTT 57.472 25.926 0.00 0.00 0.00 1.82
2259 2381 9.185192 CTTTCAACTCGCTTTCTCAATTTATTT 57.815 29.630 0.00 0.00 0.00 1.40
2260 2382 8.567948 TCTTTCAACTCGCTTTCTCAATTTATT 58.432 29.630 0.00 0.00 0.00 1.40
2261 2383 8.099364 TCTTTCAACTCGCTTTCTCAATTTAT 57.901 30.769 0.00 0.00 0.00 1.40
2262 2384 7.490962 TCTTTCAACTCGCTTTCTCAATTTA 57.509 32.000 0.00 0.00 0.00 1.40
2263 2385 6.377327 TCTTTCAACTCGCTTTCTCAATTT 57.623 33.333 0.00 0.00 0.00 1.82
2264 2386 6.205464 TCATCTTTCAACTCGCTTTCTCAATT 59.795 34.615 0.00 0.00 0.00 2.32
2265 2387 5.702670 TCATCTTTCAACTCGCTTTCTCAAT 59.297 36.000 0.00 0.00 0.00 2.57
2266 2388 5.050091 GTCATCTTTCAACTCGCTTTCTCAA 60.050 40.000 0.00 0.00 0.00 3.02
2267 2389 4.449068 GTCATCTTTCAACTCGCTTTCTCA 59.551 41.667 0.00 0.00 0.00 3.27
2268 2390 4.143009 GGTCATCTTTCAACTCGCTTTCTC 60.143 45.833 0.00 0.00 0.00 2.87
2269 2391 3.748568 GGTCATCTTTCAACTCGCTTTCT 59.251 43.478 0.00 0.00 0.00 2.52
2270 2392 3.748568 AGGTCATCTTTCAACTCGCTTTC 59.251 43.478 0.00 0.00 0.00 2.62
2271 2393 3.744660 AGGTCATCTTTCAACTCGCTTT 58.255 40.909 0.00 0.00 0.00 3.51
2272 2394 3.409026 AGGTCATCTTTCAACTCGCTT 57.591 42.857 0.00 0.00 0.00 4.68
2273 2395 4.021016 ACTTAGGTCATCTTTCAACTCGCT 60.021 41.667 0.00 0.00 0.00 4.93
2274 2396 4.246458 ACTTAGGTCATCTTTCAACTCGC 58.754 43.478 0.00 0.00 0.00 5.03
2275 2397 5.470368 TGACTTAGGTCATCTTTCAACTCG 58.530 41.667 3.11 0.00 46.19 4.18
2386 2535 6.687105 CACCGTTCAAAAGAAAAACTAGACAG 59.313 38.462 0.00 0.00 0.00 3.51
2409 2558 6.973474 CGACCATTATATAGCTAGCCTAACAC 59.027 42.308 12.13 0.00 0.00 3.32
2479 2634 6.319658 CCGTCTTTTATGAGTAGGTGTACCTA 59.680 42.308 6.69 6.69 46.48 3.08
2481 2636 5.105595 ACCGTCTTTTATGAGTAGGTGTACC 60.106 44.000 0.00 0.00 0.00 3.34
2530 2686 3.266510 TGGGAGAAGTCATGCATACAC 57.733 47.619 0.00 0.00 0.00 2.90
2560 2716 5.860611 TCGGAAGGAATGACTTTTCTGTAA 58.139 37.500 0.00 0.00 0.00 2.41
2562 2718 4.319177 CTCGGAAGGAATGACTTTTCTGT 58.681 43.478 0.00 0.00 0.00 3.41
2579 2736 0.984230 ATTCCAGGTCTTTGCTCGGA 59.016 50.000 0.00 0.00 0.00 4.55
2582 2739 2.206576 ACCATTCCAGGTCTTTGCTC 57.793 50.000 0.00 0.00 37.28 4.26
2708 2865 0.105964 TACCAACTGCACGCTTCTGT 59.894 50.000 0.00 0.00 0.00 3.41
2771 2928 2.915659 ACCCAGTCGGTGCGAGAA 60.916 61.111 0.00 0.00 46.09 2.87
2846 3003 8.114743 AGAACTGTAGTAGGGAGTAATGTAGTT 58.885 37.037 0.00 0.00 0.00 2.24
2875 3035 4.142687 CGTCATGATTTTTCCCCAGTGTAC 60.143 45.833 0.00 0.00 0.00 2.90
2886 3046 8.522830 ACCTCAAATGATTACGTCATGATTTTT 58.477 29.630 4.66 0.00 46.80 1.94
3002 3178 4.256180 ATGATCTTCGGCCCGGGC 62.256 66.667 38.57 38.57 41.06 6.13
3418 3594 6.793492 GCATTAAGCACCCAAAATTTTACA 57.207 33.333 2.44 0.00 44.79 2.41
3514 3690 2.291856 GGAAGTCCTCCACCTCCAG 58.708 63.158 0.00 0.00 44.67 3.86
3909 4088 4.701651 CCAAGATCATTGTTCACCAGCTTA 59.298 41.667 0.00 0.00 0.00 3.09
4113 4316 2.951642 AGCGCATATGTTACAGCCAAAT 59.048 40.909 11.47 0.00 0.00 2.32
4144 4347 1.078143 AAGCCAACTGGATCGCTCC 60.078 57.895 0.00 0.00 42.45 4.70
4145 4348 0.391661 TGAAGCCAACTGGATCGCTC 60.392 55.000 0.00 0.00 37.39 5.03
4146 4349 0.674895 GTGAAGCCAACTGGATCGCT 60.675 55.000 0.00 0.00 37.39 4.93
4147 4350 0.674895 AGTGAAGCCAACTGGATCGC 60.675 55.000 0.00 3.91 37.39 4.58
4148 4351 2.544685 CTAGTGAAGCCAACTGGATCG 58.455 52.381 0.00 0.00 37.39 3.69
4149 4352 2.284190 GCTAGTGAAGCCAACTGGATC 58.716 52.381 0.00 0.00 46.25 3.36
4150 4353 2.409948 GCTAGTGAAGCCAACTGGAT 57.590 50.000 0.00 0.00 46.25 3.41
4151 4354 3.935993 GCTAGTGAAGCCAACTGGA 57.064 52.632 0.00 0.00 46.25 3.86
4163 4366 2.088423 ACCTCTGAACGAGAGCTAGTG 58.912 52.381 0.00 0.00 46.36 2.74
4164 4367 2.500392 ACCTCTGAACGAGAGCTAGT 57.500 50.000 0.00 0.00 46.36 2.57
4173 4376 1.732732 CGTGAAGCCTACCTCTGAACG 60.733 57.143 0.00 0.00 0.00 3.95
4176 4379 1.890894 GCGTGAAGCCTACCTCTGA 59.109 57.895 0.00 0.00 40.81 3.27
4373 4578 1.100510 CGACCTTCCCGTACAGATCA 58.899 55.000 0.00 0.00 0.00 2.92
4376 4581 1.300971 CGTCGACCTTCCCGTACAGA 61.301 60.000 10.58 0.00 0.00 3.41
4516 4721 7.273320 AGATAATAATGGAACTTCTCGACGA 57.727 36.000 0.00 0.00 0.00 4.20
4517 4722 6.583050 GGAGATAATAATGGAACTTCTCGACG 59.417 42.308 0.00 0.00 31.16 5.12
4518 4723 6.869388 GGGAGATAATAATGGAACTTCTCGAC 59.131 42.308 0.00 0.00 31.16 4.20
4536 4741 0.323633 TTGGACGTGACGGGGAGATA 60.324 55.000 10.66 0.00 0.00 1.98
4537 4742 1.189524 TTTGGACGTGACGGGGAGAT 61.190 55.000 10.66 0.00 0.00 2.75
4538 4743 1.812686 CTTTGGACGTGACGGGGAGA 61.813 60.000 10.66 0.00 0.00 3.71
4670 4875 1.740585 CTCACTGTCGTCTCCGATCTT 59.259 52.381 0.00 0.00 46.30 2.40
4673 4878 0.805614 CACTCACTGTCGTCTCCGAT 59.194 55.000 0.00 0.00 46.30 4.18
4674 4879 0.250166 TCACTCACTGTCGTCTCCGA 60.250 55.000 0.00 0.00 41.73 4.55
4739 4944 0.249405 CCATCTCTTCTCGCTCAGCC 60.249 60.000 0.00 0.00 0.00 4.85
4742 4947 1.747924 CTGACCATCTCTTCTCGCTCA 59.252 52.381 0.00 0.00 0.00 4.26
4766 4974 2.457366 TCACCTTCTTCGCCTTCTTC 57.543 50.000 0.00 0.00 0.00 2.87
4767 4975 2.772287 CTTCACCTTCTTCGCCTTCTT 58.228 47.619 0.00 0.00 0.00 2.52
4768 4976 1.609320 GCTTCACCTTCTTCGCCTTCT 60.609 52.381 0.00 0.00 0.00 2.85
4769 4977 0.799393 GCTTCACCTTCTTCGCCTTC 59.201 55.000 0.00 0.00 0.00 3.46
4770 4978 0.606673 GGCTTCACCTTCTTCGCCTT 60.607 55.000 0.00 0.00 34.80 4.35
4771 4979 1.003233 GGCTTCACCTTCTTCGCCT 60.003 57.895 0.00 0.00 34.80 5.52
4772 4980 2.391389 CGGCTTCACCTTCTTCGCC 61.391 63.158 0.00 0.00 35.61 5.54
4773 4981 2.391389 CCGGCTTCACCTTCTTCGC 61.391 63.158 0.00 0.00 35.61 4.70
4774 4982 1.741770 CCCGGCTTCACCTTCTTCG 60.742 63.158 0.00 0.00 35.61 3.79
4856 5064 0.680618 TGCTGGAAATGCCCTTGTTG 59.319 50.000 0.00 0.00 34.97 3.33
4857 5065 1.276989 CATGCTGGAAATGCCCTTGTT 59.723 47.619 0.00 0.00 34.97 2.83
4858 5066 0.899720 CATGCTGGAAATGCCCTTGT 59.100 50.000 0.00 0.00 34.97 3.16
4950 5158 0.039074 AGACGCACGACCTTTCAGAG 60.039 55.000 0.00 0.00 0.00 3.35
5094 5310 3.244156 CACGTACGTACAAATAGTGCCA 58.756 45.455 22.34 0.00 0.00 4.92
5233 5452 8.734386 TGAAGCAAACACACCATTTAAATTTTT 58.266 25.926 0.00 0.00 0.00 1.94
5241 5460 3.883830 TGTGAAGCAAACACACCATTT 57.116 38.095 6.55 0.00 42.20 2.32
5254 5473 5.741388 ATTCTATGGAATTCGTGTGAAGC 57.259 39.130 0.00 0.00 38.89 3.86
5266 5485 6.957631 TGCTAAGGAACAGAATTCTATGGAA 58.042 36.000 7.86 0.00 35.78 3.53
5273 5492 9.508567 GTGAAATAATGCTAAGGAACAGAATTC 57.491 33.333 0.00 0.00 0.00 2.17
5274 5493 9.023962 TGTGAAATAATGCTAAGGAACAGAATT 57.976 29.630 0.00 0.00 0.00 2.17
5275 5494 8.579850 TGTGAAATAATGCTAAGGAACAGAAT 57.420 30.769 0.00 0.00 0.00 2.40
5276 5495 7.994425 TGTGAAATAATGCTAAGGAACAGAA 57.006 32.000 0.00 0.00 0.00 3.02
5277 5496 7.994425 TTGTGAAATAATGCTAAGGAACAGA 57.006 32.000 0.00 0.00 0.00 3.41
5291 5510 8.826710 CGACCAGCTCTATTATTTGTGAAATAA 58.173 33.333 4.43 4.43 44.73 1.40
5292 5511 7.985184 ACGACCAGCTCTATTATTTGTGAAATA 59.015 33.333 0.00 0.00 32.38 1.40
5293 5512 6.823689 ACGACCAGCTCTATTATTTGTGAAAT 59.176 34.615 0.00 0.00 34.90 2.17
5294 5513 6.170506 ACGACCAGCTCTATTATTTGTGAAA 58.829 36.000 0.00 0.00 0.00 2.69
5295 5514 5.730550 ACGACCAGCTCTATTATTTGTGAA 58.269 37.500 0.00 0.00 0.00 3.18
5296 5515 5.339008 ACGACCAGCTCTATTATTTGTGA 57.661 39.130 0.00 0.00 0.00 3.58
5297 5516 6.422776 AAACGACCAGCTCTATTATTTGTG 57.577 37.500 0.00 0.00 0.00 3.33
5298 5517 6.622896 GCAAAACGACCAGCTCTATTATTTGT 60.623 38.462 0.00 0.00 0.00 2.83
5299 5518 5.739161 GCAAAACGACCAGCTCTATTATTTG 59.261 40.000 0.00 0.00 0.00 2.32
5300 5519 5.648092 AGCAAAACGACCAGCTCTATTATTT 59.352 36.000 0.00 0.00 30.05 1.40
5301 5520 5.186198 AGCAAAACGACCAGCTCTATTATT 58.814 37.500 0.00 0.00 30.05 1.40
5302 5521 4.770795 AGCAAAACGACCAGCTCTATTAT 58.229 39.130 0.00 0.00 30.05 1.28
5303 5522 4.202245 AGCAAAACGACCAGCTCTATTA 57.798 40.909 0.00 0.00 30.05 0.98
5304 5523 3.059352 AGCAAAACGACCAGCTCTATT 57.941 42.857 0.00 0.00 30.05 1.73
5305 5524 2.744202 CAAGCAAAACGACCAGCTCTAT 59.256 45.455 0.00 0.00 36.07 1.98
5306 5525 2.143122 CAAGCAAAACGACCAGCTCTA 58.857 47.619 0.00 0.00 36.07 2.43
5307 5526 0.947244 CAAGCAAAACGACCAGCTCT 59.053 50.000 0.00 0.00 36.07 4.09
5308 5527 0.661483 GCAAGCAAAACGACCAGCTC 60.661 55.000 0.00 0.00 36.07 4.09
5309 5528 1.360192 GCAAGCAAAACGACCAGCT 59.640 52.632 0.00 0.00 39.37 4.24
5310 5529 2.010817 CGCAAGCAAAACGACCAGC 61.011 57.895 0.00 0.00 0.00 4.85
5311 5530 1.370414 CCGCAAGCAAAACGACCAG 60.370 57.895 0.00 0.00 0.00 4.00
5312 5531 1.658686 AACCGCAAGCAAAACGACCA 61.659 50.000 0.00 0.00 0.00 4.02
5313 5532 0.526739 AAACCGCAAGCAAAACGACC 60.527 50.000 0.00 0.00 0.00 4.79
5314 5533 1.254313 GAAAACCGCAAGCAAAACGAC 59.746 47.619 0.00 0.00 0.00 4.34
5315 5534 1.551145 GAAAACCGCAAGCAAAACGA 58.449 45.000 0.00 0.00 0.00 3.85
5316 5535 0.574922 GGAAAACCGCAAGCAAAACG 59.425 50.000 0.00 0.00 0.00 3.60
5317 5536 1.646189 TGGAAAACCGCAAGCAAAAC 58.354 45.000 0.00 0.00 0.00 2.43
5318 5537 2.386661 TTGGAAAACCGCAAGCAAAA 57.613 40.000 0.00 0.00 0.00 2.44
5319 5538 2.093973 TCTTTGGAAAACCGCAAGCAAA 60.094 40.909 0.00 0.00 0.00 3.68
5320 5539 1.478510 TCTTTGGAAAACCGCAAGCAA 59.521 42.857 0.00 0.00 0.00 3.91
5321 5540 1.107114 TCTTTGGAAAACCGCAAGCA 58.893 45.000 0.00 0.00 0.00 3.91
5322 5541 2.217429 TTCTTTGGAAAACCGCAAGC 57.783 45.000 0.00 0.00 0.00 4.01
5323 5542 2.539688 GCTTTCTTTGGAAAACCGCAAG 59.460 45.455 0.00 0.00 40.41 4.01
5324 5543 2.167487 AGCTTTCTTTGGAAAACCGCAA 59.833 40.909 0.00 0.00 40.41 4.85
5325 5544 1.754226 AGCTTTCTTTGGAAAACCGCA 59.246 42.857 0.00 0.00 40.41 5.69
5326 5545 2.509052 AGCTTTCTTTGGAAAACCGC 57.491 45.000 0.00 0.00 40.41 5.68
5327 5546 3.181480 TGGAAGCTTTCTTTGGAAAACCG 60.181 43.478 6.25 0.00 40.41 4.44
5328 5547 4.400529 TGGAAGCTTTCTTTGGAAAACC 57.599 40.909 6.25 0.00 40.41 3.27
5329 5548 6.048509 TCAATGGAAGCTTTCTTTGGAAAAC 58.951 36.000 25.39 0.02 40.41 2.43
5330 5549 6.127083 ACTCAATGGAAGCTTTCTTTGGAAAA 60.127 34.615 25.39 11.17 40.41 2.29
5331 5550 5.363580 ACTCAATGGAAGCTTTCTTTGGAAA 59.636 36.000 25.39 11.45 38.90 3.13
5332 5551 4.895297 ACTCAATGGAAGCTTTCTTTGGAA 59.105 37.500 25.39 12.01 31.48 3.53
5333 5552 4.473444 ACTCAATGGAAGCTTTCTTTGGA 58.527 39.130 25.39 15.06 31.48 3.53
5334 5553 4.522022 AGACTCAATGGAAGCTTTCTTTGG 59.478 41.667 25.39 19.68 31.48 3.28
5335 5554 5.702349 AGACTCAATGGAAGCTTTCTTTG 57.298 39.130 21.87 21.87 31.48 2.77
5336 5555 6.207614 GGTTAGACTCAATGGAAGCTTTCTTT 59.792 38.462 6.25 2.91 31.48 2.52
5337 5556 5.707764 GGTTAGACTCAATGGAAGCTTTCTT 59.292 40.000 6.25 0.00 34.68 2.52
5338 5557 5.013599 AGGTTAGACTCAATGGAAGCTTTCT 59.986 40.000 6.25 2.31 0.00 2.52
5339 5558 5.249420 AGGTTAGACTCAATGGAAGCTTTC 58.751 41.667 0.00 0.00 0.00 2.62
5340 5559 5.248380 AGGTTAGACTCAATGGAAGCTTT 57.752 39.130 0.00 0.00 0.00 3.51
5341 5560 4.917906 AGGTTAGACTCAATGGAAGCTT 57.082 40.909 0.00 0.00 0.00 3.74
5342 5561 4.534103 AGAAGGTTAGACTCAATGGAAGCT 59.466 41.667 0.00 0.00 0.00 3.74
5343 5562 4.837972 AGAAGGTTAGACTCAATGGAAGC 58.162 43.478 0.00 0.00 0.00 3.86
5344 5563 7.229506 ACAAAAGAAGGTTAGACTCAATGGAAG 59.770 37.037 0.00 0.00 0.00 3.46
5345 5564 7.060421 ACAAAAGAAGGTTAGACTCAATGGAA 58.940 34.615 0.00 0.00 0.00 3.53
5346 5565 6.601332 ACAAAAGAAGGTTAGACTCAATGGA 58.399 36.000 0.00 0.00 0.00 3.41
5347 5566 6.712547 AGACAAAAGAAGGTTAGACTCAATGG 59.287 38.462 0.00 0.00 0.00 3.16
5348 5567 7.095017 GGAGACAAAAGAAGGTTAGACTCAATG 60.095 40.741 0.00 0.00 0.00 2.82
5349 5568 6.937465 GGAGACAAAAGAAGGTTAGACTCAAT 59.063 38.462 0.00 0.00 0.00 2.57
5350 5569 6.126883 TGGAGACAAAAGAAGGTTAGACTCAA 60.127 38.462 0.00 0.00 37.44 3.02
5351 5570 5.365605 TGGAGACAAAAGAAGGTTAGACTCA 59.634 40.000 0.00 0.00 37.44 3.41
5352 5571 5.855045 TGGAGACAAAAGAAGGTTAGACTC 58.145 41.667 0.00 0.00 37.44 3.36
5353 5572 5.888982 TGGAGACAAAAGAAGGTTAGACT 57.111 39.130 0.00 0.00 37.44 3.24
5369 5588 4.883585 TGATGGCATAGTTTTCATGGAGAC 59.116 41.667 0.00 0.00 0.00 3.36
5370 5589 4.883585 GTGATGGCATAGTTTTCATGGAGA 59.116 41.667 0.00 0.00 0.00 3.71
5371 5590 4.037208 GGTGATGGCATAGTTTTCATGGAG 59.963 45.833 0.00 0.00 0.00 3.86
5372 5591 3.953612 GGTGATGGCATAGTTTTCATGGA 59.046 43.478 0.00 0.00 0.00 3.41
5373 5592 3.956199 AGGTGATGGCATAGTTTTCATGG 59.044 43.478 0.00 0.00 0.00 3.66
5374 5593 5.240183 CCTAGGTGATGGCATAGTTTTCATG 59.760 44.000 0.00 0.00 0.00 3.07
5375 5594 5.380043 CCTAGGTGATGGCATAGTTTTCAT 58.620 41.667 0.00 0.00 0.00 2.57
5376 5595 4.780815 CCTAGGTGATGGCATAGTTTTCA 58.219 43.478 0.00 0.00 0.00 2.69
5387 5606 3.474798 TCCTATAGGCCTAGGTGATGG 57.525 52.381 19.33 12.67 39.51 3.51
5388 5607 4.421131 ACTTCCTATAGGCCTAGGTGATG 58.579 47.826 19.33 16.26 39.51 3.07
5389 5608 4.768807 ACTTCCTATAGGCCTAGGTGAT 57.231 45.455 19.33 4.24 39.51 3.06
5390 5609 4.554553 AACTTCCTATAGGCCTAGGTGA 57.445 45.455 19.33 10.89 39.51 4.02
5391 5610 4.902448 AGAAACTTCCTATAGGCCTAGGTG 59.098 45.833 19.33 15.15 39.51 4.00
5392 5611 5.159139 AGAAACTTCCTATAGGCCTAGGT 57.841 43.478 19.33 4.73 39.51 3.08
5393 5612 6.075984 TGTAGAAACTTCCTATAGGCCTAGG 58.924 44.000 19.33 16.91 39.81 3.02
5394 5613 7.784470 ATGTAGAAACTTCCTATAGGCCTAG 57.216 40.000 19.33 7.13 34.44 3.02
5395 5614 8.562949 AAATGTAGAAACTTCCTATAGGCCTA 57.437 34.615 16.60 16.60 34.44 3.93
5396 5615 7.453141 AAATGTAGAAACTTCCTATAGGCCT 57.547 36.000 11.78 11.78 34.44 5.19
5397 5616 7.773690 TGAAAATGTAGAAACTTCCTATAGGCC 59.226 37.037 14.50 0.00 34.44 5.19
5398 5617 8.732746 TGAAAATGTAGAAACTTCCTATAGGC 57.267 34.615 14.50 0.00 34.44 3.93
5406 5625 6.446318 TGCACCATGAAAATGTAGAAACTTC 58.554 36.000 0.00 0.00 0.00 3.01
5428 5648 9.869757 AATCTATAATAAAGGTTGTTTGGTTGC 57.130 29.630 0.00 0.00 0.00 4.17
5575 5799 1.001068 TCTTCCCGCGTATCAAACACA 59.999 47.619 4.92 0.00 0.00 3.72
5576 5800 1.659098 CTCTTCCCGCGTATCAAACAC 59.341 52.381 4.92 0.00 0.00 3.32
5577 5801 1.404986 CCTCTTCCCGCGTATCAAACA 60.405 52.381 4.92 0.00 0.00 2.83
5578 5802 1.134907 TCCTCTTCCCGCGTATCAAAC 60.135 52.381 4.92 0.00 0.00 2.93
5579 5803 1.136305 CTCCTCTTCCCGCGTATCAAA 59.864 52.381 4.92 0.00 0.00 2.69
5580 5804 0.744874 CTCCTCTTCCCGCGTATCAA 59.255 55.000 4.92 0.00 0.00 2.57
5581 5805 0.395311 ACTCCTCTTCCCGCGTATCA 60.395 55.000 4.92 0.00 0.00 2.15
5582 5806 0.311477 GACTCCTCTTCCCGCGTATC 59.689 60.000 4.92 0.00 0.00 2.24
5583 5807 1.108132 GGACTCCTCTTCCCGCGTAT 61.108 60.000 4.92 0.00 0.00 3.06
5584 5808 1.751927 GGACTCCTCTTCCCGCGTA 60.752 63.158 4.92 0.00 0.00 4.42
5585 5809 2.207501 TAGGACTCCTCTTCCCGCGT 62.208 60.000 4.92 0.00 34.61 6.01
5586 5810 1.035932 TTAGGACTCCTCTTCCCGCG 61.036 60.000 0.00 0.00 34.61 6.46
5587 5811 1.192428 TTTAGGACTCCTCTTCCCGC 58.808 55.000 0.00 0.00 34.61 6.13
5588 5812 3.097614 TCTTTTAGGACTCCTCTTCCCG 58.902 50.000 0.00 0.00 34.61 5.14
5589 5813 3.838903 TGTCTTTTAGGACTCCTCTTCCC 59.161 47.826 0.00 0.00 37.16 3.97
5622 5846 5.473066 ACCTTTGCATGTGCTTTAATCTT 57.527 34.783 6.55 0.00 42.66 2.40
5657 5881 5.533903 AGAGCCCATAAGAAGCATAATGTTG 59.466 40.000 0.00 0.00 0.00 3.33
5659 5883 5.312079 GAGAGCCCATAAGAAGCATAATGT 58.688 41.667 0.00 0.00 0.00 2.71
5660 5884 4.699257 GGAGAGCCCATAAGAAGCATAATG 59.301 45.833 0.00 0.00 34.14 1.90
5693 5917 8.995027 AACCTCCTTATTACATCAATATGCAA 57.005 30.769 0.00 0.00 36.50 4.08
5696 5920 9.354673 ACCAAACCTCCTTATTACATCAATATG 57.645 33.333 0.00 0.00 39.17 1.78
5700 5924 6.435904 CCAACCAAACCTCCTTATTACATCAA 59.564 38.462 0.00 0.00 0.00 2.57
5701 5925 5.949354 CCAACCAAACCTCCTTATTACATCA 59.051 40.000 0.00 0.00 0.00 3.07
5702 5926 6.095021 GTCCAACCAAACCTCCTTATTACATC 59.905 42.308 0.00 0.00 0.00 3.06
5718 5942 4.463050 AGGGATTTTACAGTCCAACCAA 57.537 40.909 0.00 0.00 36.19 3.67
5737 5961 9.921637 TTTTAGTTTCATAGGCAAAACATAAGG 57.078 29.630 0.00 0.00 37.74 2.69
5766 5990 5.592587 TGAACCTAGGAAAAATGGAGGAA 57.407 39.130 17.98 0.00 0.00 3.36
5875 6099 7.047271 TGATGACGAACCATATGATTTGAGAA 58.953 34.615 3.86 0.00 0.00 2.87
5883 6107 6.406370 AGTTTCTTGATGACGAACCATATGA 58.594 36.000 3.65 0.00 0.00 2.15
5899 6123 1.600413 GCAACTTGCCCGAGTTTCTTG 60.600 52.381 1.95 0.00 37.76 3.02
5923 6147 7.720957 TGAAAATATATGTCAAGGGATGGTCAG 59.279 37.037 0.00 0.00 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.