Multiple sequence alignment - TraesCS4D01G344100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G344100 chr4D 100.000 3946 0 0 1 3946 499512674 499508729 0.000000e+00 7287.0
1 TraesCS4D01G344100 chr4D 95.906 684 17 10 1 677 359602212 359601533 0.000000e+00 1098.0
2 TraesCS4D01G344100 chr4D 79.523 923 152 22 1354 2271 499546997 499546107 1.200000e-174 623.0
3 TraesCS4D01G344100 chr4D 88.055 293 34 1 2560 2852 499545963 499545672 2.920000e-91 346.0
4 TraesCS4D01G344100 chr4D 84.615 286 44 0 987 1272 499547333 499547048 6.450000e-73 285.0
5 TraesCS4D01G344100 chr4D 93.056 144 7 1 2845 2985 499526742 499526599 1.440000e-49 207.0
6 TraesCS4D01G344100 chr4D 93.333 90 4 2 2272 2360 499510315 499510403 8.900000e-27 132.0
7 TraesCS4D01G344100 chr4D 94.595 37 0 2 2533 2567 363926648 363926612 5.510000e-04 56.5
8 TraesCS4D01G344100 chr7D 97.866 656 11 3 1 653 181303788 181303133 0.000000e+00 1131.0
9 TraesCS4D01G344100 chr7D 96.018 653 15 7 6 652 550234813 550234166 0.000000e+00 1051.0
10 TraesCS4D01G344100 chr7D 80.989 263 33 11 3040 3298 54012216 54012465 4.020000e-45 193.0
11 TraesCS4D01G344100 chr7D 92.045 88 3 2 2272 2359 613125662 613125745 1.930000e-23 121.0
12 TraesCS4D01G344100 chr3D 96.809 658 14 6 1 653 301326268 301326923 0.000000e+00 1092.0
13 TraesCS4D01G344100 chr3D 95.738 657 18 8 1 653 511888711 511888061 0.000000e+00 1050.0
14 TraesCS4D01G344100 chr3D 95.359 668 14 7 1 653 500120164 500120829 0.000000e+00 1046.0
15 TraesCS4D01G344100 chr3D 87.129 505 33 10 3468 3946 418971027 418970529 9.640000e-151 544.0
16 TraesCS4D01G344100 chr3D 75.331 981 118 69 3018 3943 571569408 571570319 1.350000e-94 357.0
17 TraesCS4D01G344100 chr3D 80.653 429 52 11 3040 3456 416514302 416514711 1.780000e-78 303.0
18 TraesCS4D01G344100 chr3D 91.304 92 5 2 2269 2360 8714469 8714557 5.350000e-24 122.0
19 TraesCS4D01G344100 chr3D 90.426 94 5 3 2273 2366 600716054 600715965 1.930000e-23 121.0
20 TraesCS4D01G344100 chr3D 90.909 77 7 0 3395 3471 418970993 418971069 1.940000e-18 104.0
21 TraesCS4D01G344100 chr3D 92.500 40 2 1 2533 2572 341502430 341502392 5.510000e-04 56.5
22 TraesCS4D01G344100 chr5D 95.903 659 16 9 1 653 449485841 449486494 0.000000e+00 1057.0
23 TraesCS4D01G344100 chr5D 96.154 650 17 6 2 645 486772733 486772086 0.000000e+00 1055.0
24 TraesCS4D01G344100 chr5D 80.092 437 37 38 3537 3943 481692438 481692854 3.000000e-71 279.0
25 TraesCS4D01G344100 chr5D 84.783 138 21 0 2357 2494 500682535 500682672 5.320000e-29 139.0
26 TraesCS4D01G344100 chr6D 94.970 656 25 7 1 653 436562997 436563647 0.000000e+00 1022.0
27 TraesCS4D01G344100 chr6D 77.000 900 126 51 3091 3943 471162198 471163063 1.300000e-119 440.0
28 TraesCS4D01G344100 chr6D 93.750 48 3 0 3251 3298 5877951 5877904 5.470000e-09 73.1
29 TraesCS4D01G344100 chr5A 89.782 734 56 10 1304 2020 680511722 680510991 0.000000e+00 922.0
30 TraesCS4D01G344100 chr5A 91.006 467 39 1 2554 3017 680509564 680509098 9.310000e-176 627.0
31 TraesCS4D01G344100 chr5A 93.176 425 20 4 3528 3946 531487936 531488357 2.010000e-172 616.0
32 TraesCS4D01G344100 chr5A 82.696 601 64 20 3376 3946 279722904 279722314 7.610000e-137 497.0
33 TraesCS4D01G344100 chr5A 92.073 328 19 2 981 1307 680512123 680511802 4.650000e-124 455.0
34 TraesCS4D01G344100 chr5A 83.390 295 43 3 996 1286 680741674 680741966 6.500000e-68 268.0
35 TraesCS4D01G344100 chr5A 82.937 252 37 2 1000 1245 680720083 680720334 5.130000e-54 222.0
36 TraesCS4D01G344100 chr5A 90.345 145 10 3 2357 2497 680509707 680509563 1.870000e-43 187.0
37 TraesCS4D01G344100 chr5A 87.742 155 10 6 987 1132 680532975 680532821 5.240000e-39 172.0
38 TraesCS4D01G344100 chr5A 100.000 29 0 0 2533 2561 480631519 480631547 2.000000e-03 54.7
39 TraesCS4D01G344100 chr4B 77.786 1310 208 35 987 2275 642463205 642461958 0.000000e+00 730.0
40 TraesCS4D01G344100 chr4B 91.455 433 34 2 2554 2986 642461822 642461393 3.400000e-165 592.0
41 TraesCS4D01G344100 chr4B 92.523 321 24 0 2665 2985 642534881 642534561 9.990000e-126 460.0
42 TraesCS4D01G344100 chr4B 82.085 307 49 5 996 1298 642958619 642958923 1.410000e-64 257.0
43 TraesCS4D01G344100 chr4B 92.254 142 11 0 2356 2497 642461962 642461821 6.690000e-48 202.0
44 TraesCS4D01G344100 chr4B 93.333 45 2 1 2494 2537 471476087 471476131 9.150000e-07 65.8
45 TraesCS4D01G344100 chr7A 82.738 672 50 20 3286 3912 111833667 111833017 4.490000e-149 538.0
46 TraesCS4D01G344100 chr7A 100.000 38 0 0 2495 2532 666595860 666595897 1.970000e-08 71.3
47 TraesCS4D01G344100 chr5B 87.257 463 46 13 3468 3924 50805127 50804672 2.100000e-142 516.0
48 TraesCS4D01G344100 chr5B 91.209 91 6 1 2273 2363 249556633 249556545 5.350000e-24 122.0
49 TraesCS4D01G344100 chr2D 85.744 484 48 11 3474 3943 381339401 381339877 3.540000e-135 492.0
50 TraesCS4D01G344100 chr2D 75.743 808 123 46 3017 3802 43219416 43220172 4.880000e-89 339.0
51 TraesCS4D01G344100 chr2D 88.079 151 17 1 3040 3189 602754316 602754466 1.130000e-40 178.0
52 TraesCS4D01G344100 chr7B 86.279 481 30 15 3478 3943 67840400 67840859 1.270000e-134 490.0
53 TraesCS4D01G344100 chr7B 78.229 542 67 33 3422 3931 72602751 72602229 2.300000e-77 300.0
54 TraesCS4D01G344100 chr7B 85.987 157 19 3 3034 3189 750253625 750253471 8.770000e-37 165.0
55 TraesCS4D01G344100 chr7B 100.000 29 0 0 2533 2561 639514052 639514024 2.000000e-03 54.7
56 TraesCS4D01G344100 chr3A 84.836 488 60 10 3468 3946 65698555 65698073 2.760000e-131 479.0
57 TraesCS4D01G344100 chr3A 74.852 676 103 45 3018 3643 729513336 729512678 1.100000e-60 244.0
58 TraesCS4D01G344100 chr3A 76.997 313 37 20 3018 3298 65699035 65698726 3.180000e-31 147.0
59 TraesCS4D01G344100 chr3A 100.000 29 0 0 3422 3450 740859325 740859353 2.000000e-03 54.7
60 TraesCS4D01G344100 chr4A 80.322 559 50 23 3414 3943 730051109 730051636 6.230000e-98 368.0
61 TraesCS4D01G344100 chr4A 100.000 29 0 0 2532 2560 743686437 743686409 2.000000e-03 54.7
62 TraesCS4D01G344100 chr3B 76.596 564 66 43 3422 3942 821905211 821904671 2.350000e-62 250.0
63 TraesCS4D01G344100 chr3B 93.333 45 2 1 2494 2537 203426151 203426195 9.150000e-07 65.8
64 TraesCS4D01G344100 chr3B 100.000 29 0 0 3422 3450 713759562 713759590 2.000000e-03 54.7
65 TraesCS4D01G344100 chr3B 96.875 32 0 1 2533 2563 40625499 40625530 7.000000e-03 52.8
66 TraesCS4D01G344100 chr1D 84.615 247 28 8 1001 1245 368318185 368318423 1.830000e-58 237.0
67 TraesCS4D01G344100 chr2A 83.200 250 21 12 3554 3803 653916036 653916264 4.000000e-50 209.0
68 TraesCS4D01G344100 chr2A 100.000 29 0 0 3422 3450 751253410 751253382 2.000000e-03 54.7
69 TraesCS4D01G344100 chr2A 100.000 29 0 0 3422 3450 751275496 751275468 2.000000e-03 54.7
70 TraesCS4D01G344100 chrUn 79.323 266 45 8 3040 3298 83901880 83901618 1.130000e-40 178.0
71 TraesCS4D01G344100 chrUn 79.323 266 45 8 3040 3298 303054101 303053839 1.130000e-40 178.0
72 TraesCS4D01G344100 chrUn 79.323 266 45 8 3040 3298 343441135 343441397 1.130000e-40 178.0
73 TraesCS4D01G344100 chrUn 100.000 28 0 0 2533 2560 24321341 24321314 7.000000e-03 52.8
74 TraesCS4D01G344100 chr1B 93.182 88 5 1 2273 2359 663609591 663609678 1.150000e-25 128.0
75 TraesCS4D01G344100 chr1B 91.954 87 5 1 2273 2359 157900409 157900325 1.930000e-23 121.0
76 TraesCS4D01G344100 chr1B 93.333 45 2 1 2494 2537 83076585 83076541 9.150000e-07 65.8
77 TraesCS4D01G344100 chr1B 93.333 45 2 1 2494 2537 410143904 410143948 9.150000e-07 65.8
78 TraesCS4D01G344100 chr1A 92.222 90 5 1 2270 2359 58483440 58483353 4.140000e-25 126.0
79 TraesCS4D01G344100 chr2B 90.000 90 7 1 2270 2359 161464995 161464908 8.960000e-22 115.0
80 TraesCS4D01G344100 chr2B 93.478 46 2 1 2495 2539 219400712 219400757 2.540000e-07 67.6
81 TraesCS4D01G344100 chr2B 93.333 45 2 1 2494 2537 120864060 120864104 9.150000e-07 65.8
82 TraesCS4D01G344100 chr2B 93.333 45 2 1 2494 2537 204976395 204976439 9.150000e-07 65.8
83 TraesCS4D01G344100 chr2B 93.333 45 2 1 2494 2537 485065235 485065191 9.150000e-07 65.8
84 TraesCS4D01G344100 chr2B 100.000 30 0 0 2533 2562 72818511 72818482 5.510000e-04 56.5
85 TraesCS4D01G344100 chr6B 100.000 30 0 0 2532 2561 281236358 281236387 5.510000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G344100 chr4D 499508729 499512674 3945 True 7287.00 7287 100.000000 1 3946 1 chr4D.!!$R3 3945
1 TraesCS4D01G344100 chr4D 359601533 359602212 679 True 1098.00 1098 95.906000 1 677 1 chr4D.!!$R1 676
2 TraesCS4D01G344100 chr4D 499545672 499547333 1661 True 418.00 623 84.064333 987 2852 3 chr4D.!!$R5 1865
3 TraesCS4D01G344100 chr7D 181303133 181303788 655 True 1131.00 1131 97.866000 1 653 1 chr7D.!!$R1 652
4 TraesCS4D01G344100 chr7D 550234166 550234813 647 True 1051.00 1051 96.018000 6 652 1 chr7D.!!$R2 646
5 TraesCS4D01G344100 chr3D 301326268 301326923 655 False 1092.00 1092 96.809000 1 653 1 chr3D.!!$F2 652
6 TraesCS4D01G344100 chr3D 511888061 511888711 650 True 1050.00 1050 95.738000 1 653 1 chr3D.!!$R3 652
7 TraesCS4D01G344100 chr3D 500120164 500120829 665 False 1046.00 1046 95.359000 1 653 1 chr3D.!!$F5 652
8 TraesCS4D01G344100 chr3D 571569408 571570319 911 False 357.00 357 75.331000 3018 3943 1 chr3D.!!$F6 925
9 TraesCS4D01G344100 chr5D 449485841 449486494 653 False 1057.00 1057 95.903000 1 653 1 chr5D.!!$F1 652
10 TraesCS4D01G344100 chr5D 486772086 486772733 647 True 1055.00 1055 96.154000 2 645 1 chr5D.!!$R1 643
11 TraesCS4D01G344100 chr6D 436562997 436563647 650 False 1022.00 1022 94.970000 1 653 1 chr6D.!!$F1 652
12 TraesCS4D01G344100 chr6D 471162198 471163063 865 False 440.00 440 77.000000 3091 3943 1 chr6D.!!$F2 852
13 TraesCS4D01G344100 chr5A 680509098 680512123 3025 True 547.75 922 90.801500 981 3017 4 chr5A.!!$R3 2036
14 TraesCS4D01G344100 chr5A 279722314 279722904 590 True 497.00 497 82.696000 3376 3946 1 chr5A.!!$R1 570
15 TraesCS4D01G344100 chr4B 642461393 642463205 1812 True 508.00 730 87.165000 987 2986 3 chr4B.!!$R2 1999
16 TraesCS4D01G344100 chr7A 111833017 111833667 650 True 538.00 538 82.738000 3286 3912 1 chr7A.!!$R1 626
17 TraesCS4D01G344100 chr2D 43219416 43220172 756 False 339.00 339 75.743000 3017 3802 1 chr2D.!!$F1 785
18 TraesCS4D01G344100 chr7B 72602229 72602751 522 True 300.00 300 78.229000 3422 3931 1 chr7B.!!$R1 509
19 TraesCS4D01G344100 chr3A 65698073 65699035 962 True 313.00 479 80.916500 3018 3946 2 chr3A.!!$R2 928
20 TraesCS4D01G344100 chr3A 729512678 729513336 658 True 244.00 244 74.852000 3018 3643 1 chr3A.!!$R1 625
21 TraesCS4D01G344100 chr4A 730051109 730051636 527 False 368.00 368 80.322000 3414 3943 1 chr4A.!!$F1 529
22 TraesCS4D01G344100 chr3B 821904671 821905211 540 True 250.00 250 76.596000 3422 3942 1 chr3B.!!$R1 520

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
843 863 0.109458 CCAGATCGAACGTTCCGACA 60.109 55.0 22.07 4.65 38.97 4.35 F
2487 3672 0.033405 AAGCCCGAGGTAGTCTAGCA 60.033 55.0 11.52 0.00 0.00 3.49 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2532 3717 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.0 5.23 0.0 44.66 2.12 R
3398 4666 0.255604 CCACATGGCACCCACTGATA 59.744 55.0 0.00 0.0 35.80 2.15 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
70 71 0.685097 GCTTCACCTCCACCACACTA 59.315 55.000 0.00 0.00 0.00 2.74
221 223 1.271934 CCATTCACGGTGCCAAAATCA 59.728 47.619 2.51 0.00 0.00 2.57
310 323 1.069636 CACAGAAGAAACGAGCAAGGC 60.070 52.381 0.00 0.00 0.00 4.35
668 688 6.413783 AAAAATTAACGGTGGATTTGACCT 57.586 33.333 3.63 0.00 0.00 3.85
669 689 6.413783 AAAATTAACGGTGGATTTGACCTT 57.586 33.333 3.63 0.00 0.00 3.50
670 690 6.413783 AAATTAACGGTGGATTTGACCTTT 57.586 33.333 0.00 0.00 0.00 3.11
671 691 6.413783 AATTAACGGTGGATTTGACCTTTT 57.586 33.333 0.00 0.00 0.00 2.27
672 692 5.855740 TTAACGGTGGATTTGACCTTTTT 57.144 34.783 0.00 0.00 0.00 1.94
673 693 6.956202 TTAACGGTGGATTTGACCTTTTTA 57.044 33.333 0.00 0.00 0.00 1.52
674 694 5.855740 AACGGTGGATTTGACCTTTTTAA 57.144 34.783 0.00 0.00 0.00 1.52
675 695 5.447624 ACGGTGGATTTGACCTTTTTAAG 57.552 39.130 0.00 0.00 0.00 1.85
676 696 4.891168 ACGGTGGATTTGACCTTTTTAAGT 59.109 37.500 0.00 0.00 0.00 2.24
677 697 6.063404 ACGGTGGATTTGACCTTTTTAAGTA 58.937 36.000 0.00 0.00 0.00 2.24
678 698 6.206048 ACGGTGGATTTGACCTTTTTAAGTAG 59.794 38.462 0.00 0.00 0.00 2.57
679 699 6.387465 GGTGGATTTGACCTTTTTAAGTAGC 58.613 40.000 0.00 0.00 0.00 3.58
680 700 6.084277 GTGGATTTGACCTTTTTAAGTAGCG 58.916 40.000 0.00 0.00 0.00 4.26
681 701 5.182380 TGGATTTGACCTTTTTAAGTAGCGG 59.818 40.000 0.00 0.00 0.00 5.52
682 702 5.182570 GGATTTGACCTTTTTAAGTAGCGGT 59.817 40.000 0.00 0.00 0.00 5.68
683 703 5.427036 TTTGACCTTTTTAAGTAGCGGTG 57.573 39.130 0.00 0.00 0.00 4.94
684 704 3.404899 TGACCTTTTTAAGTAGCGGTGG 58.595 45.455 0.00 0.00 0.00 4.61
685 705 3.071312 TGACCTTTTTAAGTAGCGGTGGA 59.929 43.478 0.00 0.00 0.00 4.02
686 706 4.259356 GACCTTTTTAAGTAGCGGTGGAT 58.741 43.478 0.00 0.00 0.00 3.41
687 707 4.659115 ACCTTTTTAAGTAGCGGTGGATT 58.341 39.130 0.00 0.00 0.00 3.01
688 708 5.074804 ACCTTTTTAAGTAGCGGTGGATTT 58.925 37.500 0.00 0.00 0.00 2.17
689 709 5.048294 ACCTTTTTAAGTAGCGGTGGATTTG 60.048 40.000 0.00 0.00 0.00 2.32
690 710 5.182380 CCTTTTTAAGTAGCGGTGGATTTGA 59.818 40.000 0.00 0.00 0.00 2.69
691 711 5.616488 TTTTAAGTAGCGGTGGATTTGAC 57.384 39.130 0.00 0.00 0.00 3.18
692 712 2.109425 AAGTAGCGGTGGATTTGACC 57.891 50.000 0.00 0.00 0.00 4.02
693 713 1.276622 AGTAGCGGTGGATTTGACCT 58.723 50.000 0.00 0.00 0.00 3.85
694 714 1.628846 AGTAGCGGTGGATTTGACCTT 59.371 47.619 0.00 0.00 0.00 3.50
695 715 2.039879 AGTAGCGGTGGATTTGACCTTT 59.960 45.455 0.00 0.00 0.00 3.11
696 716 1.995376 AGCGGTGGATTTGACCTTTT 58.005 45.000 0.00 0.00 0.00 2.27
697 717 1.886542 AGCGGTGGATTTGACCTTTTC 59.113 47.619 0.00 0.00 0.00 2.29
698 718 1.611491 GCGGTGGATTTGACCTTTTCA 59.389 47.619 0.00 0.00 0.00 2.69
699 719 2.035321 GCGGTGGATTTGACCTTTTCAA 59.965 45.455 0.00 0.00 42.83 2.69
700 720 3.306019 GCGGTGGATTTGACCTTTTCAAT 60.306 43.478 0.00 0.00 43.99 2.57
701 721 4.485163 CGGTGGATTTGACCTTTTCAATC 58.515 43.478 0.00 0.00 43.99 2.67
702 722 4.218417 CGGTGGATTTGACCTTTTCAATCT 59.782 41.667 0.00 0.00 43.99 2.40
703 723 5.414454 CGGTGGATTTGACCTTTTCAATCTA 59.586 40.000 0.00 0.00 43.99 1.98
704 724 6.072175 CGGTGGATTTGACCTTTTCAATCTAA 60.072 38.462 0.00 0.00 43.99 2.10
705 725 7.523052 CGGTGGATTTGACCTTTTCAATCTAAA 60.523 37.037 0.00 0.00 43.99 1.85
706 726 8.147704 GGTGGATTTGACCTTTTCAATCTAAAA 58.852 33.333 0.00 0.00 43.99 1.52
707 727 9.541143 GTGGATTTGACCTTTTCAATCTAAAAA 57.459 29.630 0.00 0.00 43.99 1.94
708 728 9.762933 TGGATTTGACCTTTTCAATCTAAAAAG 57.237 29.630 2.18 2.18 43.99 2.27
709 729 9.981114 GGATTTGACCTTTTCAATCTAAAAAGA 57.019 29.630 9.32 0.00 43.99 2.52
714 734 9.621629 TGACCTTTTCAATCTAAAAAGAGTACA 57.378 29.630 9.32 2.91 43.32 2.90
731 751 9.778741 AAAGAGTACAATTCTAACAATGTCAGA 57.221 29.630 0.00 0.00 0.00 3.27
732 752 9.778741 AAGAGTACAATTCTAACAATGTCAGAA 57.221 29.630 0.88 0.88 33.12 3.02
733 753 9.209175 AGAGTACAATTCTAACAATGTCAGAAC 57.791 33.333 0.31 0.00 31.47 3.01
734 754 8.902540 AGTACAATTCTAACAATGTCAGAACA 57.097 30.769 0.31 0.00 40.38 3.18
735 755 8.993121 AGTACAATTCTAACAATGTCAGAACAG 58.007 33.333 0.31 0.14 39.20 3.16
736 756 7.807977 ACAATTCTAACAATGTCAGAACAGT 57.192 32.000 0.31 0.76 39.20 3.55
745 765 2.143122 TGTCAGAACAGTGAATTCGGC 58.857 47.619 0.00 0.00 0.00 5.54
746 766 1.464997 GTCAGAACAGTGAATTCGGCC 59.535 52.381 0.00 0.00 0.00 6.13
747 767 1.071542 TCAGAACAGTGAATTCGGCCA 59.928 47.619 2.24 0.00 0.00 5.36
748 768 1.879380 CAGAACAGTGAATTCGGCCAA 59.121 47.619 2.24 0.00 0.00 4.52
749 769 2.293122 CAGAACAGTGAATTCGGCCAAA 59.707 45.455 2.24 0.00 0.00 3.28
750 770 2.955660 AGAACAGTGAATTCGGCCAAAA 59.044 40.909 2.24 0.00 0.00 2.44
751 771 3.573967 AGAACAGTGAATTCGGCCAAAAT 59.426 39.130 2.24 0.00 0.00 1.82
752 772 4.039124 AGAACAGTGAATTCGGCCAAAATT 59.961 37.500 11.81 11.81 0.00 1.82
753 773 3.652274 ACAGTGAATTCGGCCAAAATTG 58.348 40.909 15.80 6.73 0.00 2.32
754 774 3.069443 ACAGTGAATTCGGCCAAAATTGT 59.931 39.130 15.80 7.26 0.00 2.71
755 775 4.057432 CAGTGAATTCGGCCAAAATTGTT 58.943 39.130 15.80 0.00 0.00 2.83
756 776 4.511082 CAGTGAATTCGGCCAAAATTGTTT 59.489 37.500 15.80 0.00 0.00 2.83
757 777 4.749598 AGTGAATTCGGCCAAAATTGTTTC 59.250 37.500 15.80 0.00 0.00 2.78
758 778 4.061596 TGAATTCGGCCAAAATTGTTTCC 58.938 39.130 15.80 4.26 0.00 3.13
759 779 3.760580 ATTCGGCCAAAATTGTTTCCA 57.239 38.095 2.24 0.00 0.00 3.53
760 780 3.760580 TTCGGCCAAAATTGTTTCCAT 57.239 38.095 2.24 0.00 0.00 3.41
761 781 3.311486 TCGGCCAAAATTGTTTCCATC 57.689 42.857 2.24 0.00 0.00 3.51
762 782 1.991965 CGGCCAAAATTGTTTCCATCG 59.008 47.619 2.24 0.00 0.00 3.84
763 783 2.352225 CGGCCAAAATTGTTTCCATCGA 60.352 45.455 2.24 0.00 0.00 3.59
764 784 3.675775 CGGCCAAAATTGTTTCCATCGAT 60.676 43.478 2.24 0.00 0.00 3.59
765 785 3.865164 GGCCAAAATTGTTTCCATCGATC 59.135 43.478 0.00 0.00 0.00 3.69
766 786 3.547468 GCCAAAATTGTTTCCATCGATCG 59.453 43.478 9.36 9.36 0.00 3.69
767 787 4.674101 GCCAAAATTGTTTCCATCGATCGA 60.674 41.667 21.86 21.86 0.00 3.59
768 788 5.398169 CCAAAATTGTTTCCATCGATCGAA 58.602 37.500 23.50 2.26 0.00 3.71
769 789 6.035843 CCAAAATTGTTTCCATCGATCGAAT 58.964 36.000 23.50 8.05 0.00 3.34
770 790 6.197096 CCAAAATTGTTTCCATCGATCGAATC 59.803 38.462 23.50 6.59 0.00 2.52
798 818 3.109240 GTCTCGACGGGTAGCCTC 58.891 66.667 9.73 4.99 0.00 4.70
799 819 1.748122 GTCTCGACGGGTAGCCTCA 60.748 63.158 9.73 0.00 0.00 3.86
800 820 1.001764 TCTCGACGGGTAGCCTCAA 60.002 57.895 9.73 0.00 0.00 3.02
801 821 0.609957 TCTCGACGGGTAGCCTCAAA 60.610 55.000 9.73 0.00 0.00 2.69
802 822 0.460311 CTCGACGGGTAGCCTCAAAT 59.540 55.000 9.73 0.00 0.00 2.32
803 823 0.458669 TCGACGGGTAGCCTCAAATC 59.541 55.000 9.73 0.00 0.00 2.17
804 824 0.460311 CGACGGGTAGCCTCAAATCT 59.540 55.000 9.73 0.00 0.00 2.40
805 825 1.802880 CGACGGGTAGCCTCAAATCTG 60.803 57.143 9.73 0.00 0.00 2.90
806 826 1.480954 GACGGGTAGCCTCAAATCTGA 59.519 52.381 9.73 0.00 0.00 3.27
807 827 1.207329 ACGGGTAGCCTCAAATCTGAC 59.793 52.381 9.73 0.00 0.00 3.51
808 828 1.802880 CGGGTAGCCTCAAATCTGACG 60.803 57.143 9.73 0.00 0.00 4.35
809 829 1.480954 GGGTAGCCTCAAATCTGACGA 59.519 52.381 2.95 0.00 0.00 4.20
810 830 2.482142 GGGTAGCCTCAAATCTGACGAG 60.482 54.545 2.95 0.00 0.00 4.18
811 831 2.166664 GGTAGCCTCAAATCTGACGAGT 59.833 50.000 0.00 0.00 0.00 4.18
812 832 3.368531 GGTAGCCTCAAATCTGACGAGTT 60.369 47.826 0.00 0.00 0.00 3.01
813 833 2.966050 AGCCTCAAATCTGACGAGTTC 58.034 47.619 0.00 0.00 0.00 3.01
814 834 1.656095 GCCTCAAATCTGACGAGTTCG 59.344 52.381 0.00 0.00 46.33 3.95
828 848 4.156664 CGAGTTCGTTAGTTTCTCCAGA 57.843 45.455 0.00 0.00 34.11 3.86
829 849 4.734917 CGAGTTCGTTAGTTTCTCCAGAT 58.265 43.478 0.00 0.00 34.11 2.90
830 850 4.794246 CGAGTTCGTTAGTTTCTCCAGATC 59.206 45.833 0.00 0.00 34.11 2.75
831 851 4.734917 AGTTCGTTAGTTTCTCCAGATCG 58.265 43.478 0.00 0.00 0.00 3.69
832 852 4.458295 AGTTCGTTAGTTTCTCCAGATCGA 59.542 41.667 0.00 0.00 0.00 3.59
833 853 5.048224 AGTTCGTTAGTTTCTCCAGATCGAA 60.048 40.000 0.00 0.00 33.58 3.71
834 854 4.730657 TCGTTAGTTTCTCCAGATCGAAC 58.269 43.478 0.00 0.00 0.00 3.95
835 855 3.542704 CGTTAGTTTCTCCAGATCGAACG 59.457 47.826 0.00 10.56 34.48 3.95
836 856 4.483311 GTTAGTTTCTCCAGATCGAACGT 58.517 43.478 0.00 0.00 0.00 3.99
837 857 3.662247 AGTTTCTCCAGATCGAACGTT 57.338 42.857 0.00 0.00 0.00 3.99
838 858 3.576648 AGTTTCTCCAGATCGAACGTTC 58.423 45.455 18.47 18.47 0.00 3.95
839 859 2.649331 TTCTCCAGATCGAACGTTCC 57.351 50.000 22.07 8.72 0.00 3.62
840 860 0.450583 TCTCCAGATCGAACGTTCCG 59.549 55.000 22.07 16.49 0.00 4.30
841 861 0.450583 CTCCAGATCGAACGTTCCGA 59.549 55.000 22.07 20.72 40.53 4.55
842 862 0.169672 TCCAGATCGAACGTTCCGAC 59.830 55.000 22.07 12.80 38.97 4.79
843 863 0.109458 CCAGATCGAACGTTCCGACA 60.109 55.000 22.07 4.65 38.97 4.35
844 864 1.469251 CCAGATCGAACGTTCCGACAT 60.469 52.381 22.07 9.23 38.97 3.06
845 865 2.223409 CCAGATCGAACGTTCCGACATA 60.223 50.000 22.07 2.08 38.97 2.29
846 866 3.550233 CCAGATCGAACGTTCCGACATAT 60.550 47.826 22.07 7.94 38.97 1.78
847 867 4.319984 CCAGATCGAACGTTCCGACATATA 60.320 45.833 22.07 1.82 38.97 0.86
848 868 5.391449 CAGATCGAACGTTCCGACATATAT 58.609 41.667 22.07 6.97 38.97 0.86
849 869 5.508573 CAGATCGAACGTTCCGACATATATC 59.491 44.000 22.07 14.16 38.97 1.63
850 870 4.151258 TCGAACGTTCCGACATATATCC 57.849 45.455 22.07 0.00 0.00 2.59
851 871 3.817084 TCGAACGTTCCGACATATATCCT 59.183 43.478 22.07 0.00 0.00 3.24
852 872 3.912563 CGAACGTTCCGACATATATCCTG 59.087 47.826 22.07 0.00 0.00 3.86
853 873 4.556104 CGAACGTTCCGACATATATCCTGT 60.556 45.833 22.07 0.00 0.00 4.00
854 874 4.500603 ACGTTCCGACATATATCCTGTC 57.499 45.455 7.85 7.85 39.69 3.51
855 875 3.255149 ACGTTCCGACATATATCCTGTCC 59.745 47.826 10.98 0.22 39.89 4.02
856 876 3.506455 CGTTCCGACATATATCCTGTCCT 59.494 47.826 10.98 0.00 39.89 3.85
857 877 4.698780 CGTTCCGACATATATCCTGTCCTA 59.301 45.833 10.98 0.43 39.89 2.94
858 878 5.182570 CGTTCCGACATATATCCTGTCCTAA 59.817 44.000 10.98 5.09 39.89 2.69
859 879 6.294342 CGTTCCGACATATATCCTGTCCTAAA 60.294 42.308 10.98 3.34 39.89 1.85
860 880 7.439381 GTTCCGACATATATCCTGTCCTAAAA 58.561 38.462 10.98 1.60 39.89 1.52
861 881 7.792364 TCCGACATATATCCTGTCCTAAAAT 57.208 36.000 10.98 0.00 39.89 1.82
862 882 8.202461 TCCGACATATATCCTGTCCTAAAATT 57.798 34.615 10.98 0.00 39.89 1.82
863 883 9.316594 TCCGACATATATCCTGTCCTAAAATTA 57.683 33.333 10.98 0.00 39.89 1.40
864 884 9.587772 CCGACATATATCCTGTCCTAAAATTAG 57.412 37.037 10.98 0.00 39.89 1.73
872 892 8.849543 ATCCTGTCCTAAAATTAGTAGTACCA 57.150 34.615 0.00 0.00 0.00 3.25
873 893 8.071177 TCCTGTCCTAAAATTAGTAGTACCAC 57.929 38.462 0.00 0.00 0.00 4.16
874 894 7.897565 TCCTGTCCTAAAATTAGTAGTACCACT 59.102 37.037 0.00 0.00 0.00 4.00
875 895 8.196103 CCTGTCCTAAAATTAGTAGTACCACTC 58.804 40.741 0.00 0.00 0.00 3.51
876 896 8.071177 TGTCCTAAAATTAGTAGTACCACTCC 57.929 38.462 0.00 0.00 0.00 3.85
877 897 7.675195 TGTCCTAAAATTAGTAGTACCACTCCA 59.325 37.037 0.00 0.00 0.00 3.86
878 898 8.534496 GTCCTAAAATTAGTAGTACCACTCCAA 58.466 37.037 0.00 0.00 0.00 3.53
879 899 9.103582 TCCTAAAATTAGTAGTACCACTCCAAA 57.896 33.333 0.00 0.00 0.00 3.28
880 900 9.379791 CCTAAAATTAGTAGTACCACTCCAAAG 57.620 37.037 0.00 0.00 0.00 2.77
881 901 9.939802 CTAAAATTAGTAGTACCACTCCAAAGT 57.060 33.333 0.00 0.00 35.60 2.66
884 904 9.716531 AAATTAGTAGTACCACTCCAAAGTTAC 57.283 33.333 0.00 0.00 31.71 2.50
885 905 7.838079 TTAGTAGTACCACTCCAAAGTTACA 57.162 36.000 0.00 0.00 31.71 2.41
886 906 6.736110 AGTAGTACCACTCCAAAGTTACAA 57.264 37.500 0.00 0.00 31.71 2.41
887 907 6.756221 AGTAGTACCACTCCAAAGTTACAAG 58.244 40.000 0.00 0.00 31.71 3.16
888 908 4.969484 AGTACCACTCCAAAGTTACAAGG 58.031 43.478 0.00 0.00 31.71 3.61
889 909 2.583143 ACCACTCCAAAGTTACAAGGC 58.417 47.619 0.00 0.00 31.71 4.35
890 910 2.092103 ACCACTCCAAAGTTACAAGGCA 60.092 45.455 0.00 0.00 31.71 4.75
891 911 3.157087 CCACTCCAAAGTTACAAGGCAT 58.843 45.455 0.00 0.00 31.71 4.40
892 912 3.191371 CCACTCCAAAGTTACAAGGCATC 59.809 47.826 0.00 0.00 31.71 3.91
893 913 3.820467 CACTCCAAAGTTACAAGGCATCA 59.180 43.478 0.00 0.00 31.71 3.07
894 914 3.821033 ACTCCAAAGTTACAAGGCATCAC 59.179 43.478 0.00 0.00 28.74 3.06
895 915 2.811431 TCCAAAGTTACAAGGCATCACG 59.189 45.455 0.00 0.00 0.00 4.35
896 916 2.584791 CAAAGTTACAAGGCATCACGC 58.415 47.619 0.00 0.00 41.28 5.34
897 917 2.185004 AAGTTACAAGGCATCACGCT 57.815 45.000 0.00 0.00 41.91 5.07
898 918 2.185004 AGTTACAAGGCATCACGCTT 57.815 45.000 0.00 0.00 41.91 4.68
899 919 2.504367 AGTTACAAGGCATCACGCTTT 58.496 42.857 0.00 0.00 41.33 3.51
900 920 3.670625 AGTTACAAGGCATCACGCTTTA 58.329 40.909 0.00 0.00 37.95 1.85
901 921 4.261801 AGTTACAAGGCATCACGCTTTAT 58.738 39.130 0.00 0.00 37.95 1.40
902 922 4.700213 AGTTACAAGGCATCACGCTTTATT 59.300 37.500 0.00 0.00 37.95 1.40
903 923 5.183140 AGTTACAAGGCATCACGCTTTATTT 59.817 36.000 0.00 0.00 37.95 1.40
904 924 4.519540 ACAAGGCATCACGCTTTATTTT 57.480 36.364 0.00 0.00 37.95 1.82
905 925 4.236935 ACAAGGCATCACGCTTTATTTTG 58.763 39.130 0.00 0.00 37.95 2.44
906 926 2.879826 AGGCATCACGCTTTATTTTGC 58.120 42.857 0.00 0.00 41.91 3.68
907 927 2.493278 AGGCATCACGCTTTATTTTGCT 59.507 40.909 0.00 0.00 41.91 3.91
908 928 2.854185 GGCATCACGCTTTATTTTGCTC 59.146 45.455 0.00 0.00 41.91 4.26
909 929 3.500982 GCATCACGCTTTATTTTGCTCA 58.499 40.909 0.00 0.00 37.77 4.26
910 930 3.919804 GCATCACGCTTTATTTTGCTCAA 59.080 39.130 0.00 0.00 37.77 3.02
911 931 4.030977 GCATCACGCTTTATTTTGCTCAAG 59.969 41.667 0.00 0.00 37.77 3.02
912 932 4.829064 TCACGCTTTATTTTGCTCAAGT 57.171 36.364 0.00 0.00 0.00 3.16
913 933 5.181690 TCACGCTTTATTTTGCTCAAGTT 57.818 34.783 0.00 0.00 0.00 2.66
914 934 5.212194 TCACGCTTTATTTTGCTCAAGTTC 58.788 37.500 0.00 0.00 0.00 3.01
915 935 4.382754 CACGCTTTATTTTGCTCAAGTTCC 59.617 41.667 0.00 0.00 0.00 3.62
916 936 3.920412 CGCTTTATTTTGCTCAAGTTCCC 59.080 43.478 0.00 0.00 0.00 3.97
917 937 4.245660 GCTTTATTTTGCTCAAGTTCCCC 58.754 43.478 0.00 0.00 0.00 4.81
918 938 4.485163 CTTTATTTTGCTCAAGTTCCCCG 58.515 43.478 0.00 0.00 0.00 5.73
919 939 1.995376 ATTTTGCTCAAGTTCCCCGT 58.005 45.000 0.00 0.00 0.00 5.28
920 940 1.028905 TTTTGCTCAAGTTCCCCGTG 58.971 50.000 0.00 0.00 0.00 4.94
921 941 1.452145 TTTGCTCAAGTTCCCCGTGC 61.452 55.000 0.00 0.00 0.00 5.34
922 942 3.423154 GCTCAAGTTCCCCGTGCG 61.423 66.667 0.00 0.00 0.00 5.34
923 943 2.030562 CTCAAGTTCCCCGTGCGT 59.969 61.111 0.00 0.00 0.00 5.24
924 944 1.597027 CTCAAGTTCCCCGTGCGTT 60.597 57.895 0.00 0.00 0.00 4.84
925 945 0.320073 CTCAAGTTCCCCGTGCGTTA 60.320 55.000 0.00 0.00 0.00 3.18
926 946 0.600782 TCAAGTTCCCCGTGCGTTAC 60.601 55.000 0.00 0.00 0.00 2.50
942 962 4.309254 CGTTACGCTTTTTCTTCCTCTC 57.691 45.455 0.00 0.00 0.00 3.20
943 963 3.123116 CGTTACGCTTTTTCTTCCTCTCC 59.877 47.826 0.00 0.00 0.00 3.71
944 964 1.797025 ACGCTTTTTCTTCCTCTCCG 58.203 50.000 0.00 0.00 0.00 4.63
945 965 1.079503 CGCTTTTTCTTCCTCTCCGG 58.920 55.000 0.00 0.00 0.00 5.14
946 966 1.608283 CGCTTTTTCTTCCTCTCCGGT 60.608 52.381 0.00 0.00 0.00 5.28
947 967 2.353406 CGCTTTTTCTTCCTCTCCGGTA 60.353 50.000 0.00 0.00 0.00 4.02
948 968 3.001414 GCTTTTTCTTCCTCTCCGGTAC 58.999 50.000 0.00 0.00 0.00 3.34
949 969 3.306849 GCTTTTTCTTCCTCTCCGGTACT 60.307 47.826 0.00 0.00 0.00 2.73
950 970 4.803253 GCTTTTTCTTCCTCTCCGGTACTT 60.803 45.833 0.00 0.00 0.00 2.24
951 971 5.568223 GCTTTTTCTTCCTCTCCGGTACTTA 60.568 44.000 0.00 0.00 0.00 2.24
952 972 6.616237 TTTTTCTTCCTCTCCGGTACTTAT 57.384 37.500 0.00 0.00 0.00 1.73
953 973 7.632245 GCTTTTTCTTCCTCTCCGGTACTTATA 60.632 40.741 0.00 0.00 0.00 0.98
954 974 7.722949 TTTTCTTCCTCTCCGGTACTTATAA 57.277 36.000 0.00 0.00 0.00 0.98
955 975 7.909485 TTTCTTCCTCTCCGGTACTTATAAT 57.091 36.000 0.00 0.00 0.00 1.28
956 976 9.425248 TTTTCTTCCTCTCCGGTACTTATAATA 57.575 33.333 0.00 0.00 0.00 0.98
957 977 9.425248 TTTCTTCCTCTCCGGTACTTATAATAA 57.575 33.333 0.00 0.00 0.00 1.40
958 978 9.425248 TTCTTCCTCTCCGGTACTTATAATAAA 57.575 33.333 0.00 0.00 0.00 1.40
959 979 9.425248 TCTTCCTCTCCGGTACTTATAATAAAA 57.575 33.333 0.00 0.00 0.00 1.52
960 980 9.694137 CTTCCTCTCCGGTACTTATAATAAAAG 57.306 37.037 0.00 0.00 0.00 2.27
961 981 8.773033 TCCTCTCCGGTACTTATAATAAAAGT 57.227 34.615 0.00 0.00 40.25 2.66
962 982 9.205513 TCCTCTCCGGTACTTATAATAAAAGTT 57.794 33.333 0.00 0.00 38.18 2.66
973 993 9.545611 ACTTATAATAAAAGTTAAAACACGCCG 57.454 29.630 0.00 0.00 33.39 6.46
974 994 9.545611 CTTATAATAAAAGTTAAAACACGCCGT 57.454 29.630 0.00 0.00 0.00 5.68
975 995 7.784790 ATAATAAAAGTTAAAACACGCCGTG 57.215 32.000 16.94 16.94 39.75 4.94
976 996 2.478547 AAAGTTAAAACACGCCGTGG 57.521 45.000 22.60 3.61 37.94 4.94
977 997 0.664224 AAGTTAAAACACGCCGTGGG 59.336 50.000 22.60 0.00 37.94 4.61
978 998 1.370778 GTTAAAACACGCCGTGGGC 60.371 57.895 22.60 0.00 46.75 5.36
1020 1040 2.425143 TGGCCTCCATCAAGATCAAC 57.575 50.000 3.32 0.00 0.00 3.18
1133 1153 4.379243 CGCCGTCCAGTCCTGCTT 62.379 66.667 0.00 0.00 0.00 3.91
1175 1195 2.125350 CCTCTCCAACCTCTGCGC 60.125 66.667 0.00 0.00 0.00 6.09
1241 1261 2.298610 CTGTCATGGCATGCTTCTCAT 58.701 47.619 22.56 9.52 35.31 2.90
1278 1298 6.439712 GACGAGTTCGAGTACGTATACATA 57.560 41.667 8.72 0.00 43.02 2.29
1282 1302 7.595130 ACGAGTTCGAGTACGTATACATATACA 59.405 37.037 8.72 0.00 43.02 2.29
1326 1438 6.980978 GCTACTATGATCTAAGTGTGCTTTCA 59.019 38.462 9.87 0.00 36.22 2.69
1328 1440 7.175347 ACTATGATCTAAGTGTGCTTTCAGA 57.825 36.000 0.00 0.00 36.22 3.27
1345 1457 6.978080 GCTTTCAGATAGAGTACTCTTTCAGG 59.022 42.308 32.01 25.55 39.24 3.86
1367 1493 7.838771 AGGTACGATTTACCTGACAAAATAC 57.161 36.000 2.06 0.00 45.56 1.89
1407 1533 2.433217 AGCCAACAGTTGCTGCAAT 58.567 47.368 19.11 4.99 36.23 3.56
1438 1564 0.680618 CAAGGGCTCCAAATGTTGCA 59.319 50.000 0.00 0.00 0.00 4.08
1442 1568 2.102578 GGGCTCCAAATGTTGCATACT 58.897 47.619 0.00 0.00 0.00 2.12
1459 1585 0.252421 ACTCATGGCCAGACTCCTGA 60.252 55.000 13.05 8.04 43.02 3.86
1518 1647 3.633573 CCGCAAAGAACGGTTTGTT 57.366 47.368 0.00 0.00 45.70 2.83
1529 1658 4.154195 AGAACGGTTTGTTATCAGTGATGC 59.846 41.667 16.15 8.94 42.09 3.91
1536 1665 3.197265 TGTTATCAGTGATGCCATGACG 58.803 45.455 16.15 0.00 0.00 4.35
1645 1774 3.604629 GCGTCAGCTGGGAGACTA 58.395 61.111 15.13 0.00 41.01 2.59
1671 1800 9.745880 ATAAGATCATCGATTTAGTACAACGTT 57.254 29.630 0.00 0.00 0.00 3.99
1673 1802 5.444586 TCATCGATTTAGTACAACGTTGC 57.555 39.130 27.61 12.75 0.00 4.17
1675 1804 6.324042 TCATCGATTTAGTACAACGTTGCTA 58.676 36.000 27.61 18.11 0.00 3.49
1676 1805 6.807720 TCATCGATTTAGTACAACGTTGCTAA 59.192 34.615 27.61 22.31 0.00 3.09
1699 1832 6.648879 AGCTAGGATCAGAGTAGAATCAAC 57.351 41.667 0.00 0.00 0.00 3.18
1753 1893 7.653647 TGGTGTAGGTTTTATTCATGTTCAAC 58.346 34.615 0.00 0.00 0.00 3.18
1780 1920 6.155393 CCTCCCTTTCTTCAGATACAGTACTT 59.845 42.308 0.00 0.00 0.00 2.24
1782 1922 8.840200 TCCCTTTCTTCAGATACAGTACTTAT 57.160 34.615 0.00 0.00 0.00 1.73
1793 1933 9.920133 CAGATACAGTACTTATTGATGCATACT 57.080 33.333 0.00 0.00 0.00 2.12
1797 1937 8.018537 ACAGTACTTATTGATGCATACTACCA 57.981 34.615 0.00 0.00 0.00 3.25
1800 1940 9.547753 AGTACTTATTGATGCATACTACCAAAG 57.452 33.333 0.00 0.37 0.00 2.77
1811 1955 6.014070 TGCATACTACCAAAGGAAACTGACTA 60.014 38.462 0.00 0.00 42.68 2.59
1815 1959 7.259088 ACTACCAAAGGAAACTGACTATCAT 57.741 36.000 0.00 0.00 42.68 2.45
1829 1976 0.179037 TATCATCAGGCTGCTGGTGC 60.179 55.000 17.49 0.00 35.55 5.01
1834 1981 2.033757 AGGCTGCTGGTGCTTCTG 59.966 61.111 0.00 0.00 40.48 3.02
1862 2009 9.339492 GAAACAGATCATCTTCAATCAGAAAAC 57.661 33.333 0.00 0.00 35.40 2.43
1881 2028 1.002033 ACGCTACCGTCCGATCAATAC 60.002 52.381 0.00 0.00 46.39 1.89
1884 2031 2.351544 GCTACCGTCCGATCAATACTCC 60.352 54.545 0.00 0.00 0.00 3.85
1911 2058 3.603532 CTCTGCACCAGAAAGCAAGATA 58.396 45.455 0.00 0.00 40.18 1.98
1932 2079 7.653647 AGATAAAGATCTTCTATCACACCGAC 58.346 38.462 24.19 8.80 39.56 4.79
1953 2100 4.323417 ACGAAAAGAAGGTCATGTATGCA 58.677 39.130 0.00 0.00 0.00 3.96
1973 2120 1.470098 AGAATGCAACCATGACTTCGC 59.530 47.619 0.00 0.00 0.00 4.70
1975 2122 0.608856 ATGCAACCATGACTTCGCCA 60.609 50.000 0.00 0.00 0.00 5.69
1996 2143 1.078848 CTGCTCCTCGGTTTCCTGG 60.079 63.158 0.00 0.00 0.00 4.45
2028 3207 5.213891 TCAGCTCTGTTATCAAGAACACA 57.786 39.130 0.00 0.00 34.40 3.72
2035 3214 3.585289 TGTTATCAAGAACACAGGGGCTA 59.415 43.478 0.00 0.00 34.40 3.93
2073 3252 3.683847 GCAGGTGCCTCAACAATCTCTAT 60.684 47.826 0.00 0.00 34.31 1.98
2118 3297 0.250901 CTGGGTGCTTAACAGGTGCT 60.251 55.000 0.00 0.00 0.00 4.40
2149 3328 1.401931 CCAAGTTGCTGAATCCAAGCG 60.402 52.381 0.00 0.00 0.00 4.68
2151 3330 1.160137 AGTTGCTGAATCCAAGCGTC 58.840 50.000 0.00 0.00 0.00 5.19
2164 3343 0.732880 AAGCGTCAGACCGTTCGATG 60.733 55.000 0.00 0.00 0.00 3.84
2165 3344 2.789203 GCGTCAGACCGTTCGATGC 61.789 63.158 0.00 4.04 33.36 3.91
2271 3450 3.415212 TGAGCTTGTTGAAGATGGAAGG 58.585 45.455 0.00 0.00 0.00 3.46
2272 3451 3.181440 TGAGCTTGTTGAAGATGGAAGGT 60.181 43.478 0.00 0.00 0.00 3.50
2273 3452 4.041567 TGAGCTTGTTGAAGATGGAAGGTA 59.958 41.667 0.00 0.00 0.00 3.08
2274 3453 4.327680 AGCTTGTTGAAGATGGAAGGTAC 58.672 43.478 0.00 0.00 0.00 3.34
2276 3455 4.393371 GCTTGTTGAAGATGGAAGGTACTC 59.607 45.833 0.00 0.00 38.49 2.59
2277 3456 4.553330 TGTTGAAGATGGAAGGTACTCC 57.447 45.455 0.00 0.00 38.49 3.85
2278 3457 3.263425 TGTTGAAGATGGAAGGTACTCCC 59.737 47.826 0.00 0.00 38.49 4.30
2280 3459 3.375699 TGAAGATGGAAGGTACTCCCTC 58.624 50.000 0.00 0.00 45.47 4.30
2281 3460 3.012959 TGAAGATGGAAGGTACTCCCTCT 59.987 47.826 3.88 3.88 45.47 3.69
2282 3461 3.039252 AGATGGAAGGTACTCCCTCTG 57.961 52.381 7.79 0.00 45.47 3.35
2283 3462 2.316372 AGATGGAAGGTACTCCCTCTGT 59.684 50.000 7.79 0.00 45.47 3.41
2284 3463 2.233305 TGGAAGGTACTCCCTCTGTC 57.767 55.000 0.00 0.00 45.47 3.51
2285 3464 1.273098 TGGAAGGTACTCCCTCTGTCC 60.273 57.143 0.00 0.00 45.47 4.02
2286 3465 1.487300 GAAGGTACTCCCTCTGTCCC 58.513 60.000 0.00 0.00 45.47 4.46
2287 3466 0.790993 AAGGTACTCCCTCTGTCCCA 59.209 55.000 0.00 0.00 45.47 4.37
2288 3467 1.019650 AGGTACTCCCTCTGTCCCAT 58.980 55.000 0.00 0.00 40.71 4.00
2289 3468 2.224077 AGGTACTCCCTCTGTCCCATA 58.776 52.381 0.00 0.00 40.71 2.74
2290 3469 2.590611 AGGTACTCCCTCTGTCCCATAA 59.409 50.000 0.00 0.00 40.71 1.90
2291 3470 3.210074 AGGTACTCCCTCTGTCCCATAAT 59.790 47.826 0.00 0.00 40.71 1.28
2292 3471 3.325135 GGTACTCCCTCTGTCCCATAATG 59.675 52.174 0.00 0.00 0.00 1.90
2293 3472 3.136641 ACTCCCTCTGTCCCATAATGT 57.863 47.619 0.00 0.00 0.00 2.71
2294 3473 4.280789 ACTCCCTCTGTCCCATAATGTA 57.719 45.455 0.00 0.00 0.00 2.29
2295 3474 4.631234 ACTCCCTCTGTCCCATAATGTAA 58.369 43.478 0.00 0.00 0.00 2.41
2296 3475 4.656112 ACTCCCTCTGTCCCATAATGTAAG 59.344 45.833 0.00 0.00 0.00 2.34
2297 3476 3.973973 TCCCTCTGTCCCATAATGTAAGG 59.026 47.826 0.00 0.00 0.00 2.69
2298 3477 3.496870 CCCTCTGTCCCATAATGTAAGGC 60.497 52.174 0.00 0.00 0.00 4.35
2299 3478 3.393800 CTCTGTCCCATAATGTAAGGCG 58.606 50.000 0.00 0.00 0.00 5.52
2300 3479 2.769663 TCTGTCCCATAATGTAAGGCGT 59.230 45.455 0.00 0.00 0.00 5.68
2301 3480 3.199071 TCTGTCCCATAATGTAAGGCGTT 59.801 43.478 0.00 0.00 0.00 4.84
2302 3481 3.945285 CTGTCCCATAATGTAAGGCGTTT 59.055 43.478 0.00 0.00 0.00 3.60
2303 3482 4.337145 TGTCCCATAATGTAAGGCGTTTT 58.663 39.130 0.00 0.00 0.00 2.43
2304 3483 4.767928 TGTCCCATAATGTAAGGCGTTTTT 59.232 37.500 0.00 0.00 0.00 1.94
2348 3527 4.976224 AAAACGCCTTACATTATGGGAC 57.024 40.909 0.00 0.00 0.00 4.46
2392 3571 6.625960 GCGATGATCTACTTATACATCAGGCA 60.626 42.308 0.00 0.00 37.70 4.75
2436 3615 1.072505 GGTGCGGGAGAAACAAGGA 59.927 57.895 0.00 0.00 0.00 3.36
2459 3638 6.240002 GGATATGGTACTGGAGATGGACATTT 60.240 42.308 0.00 0.00 0.00 2.32
2480 3659 0.390860 CATCAGGAAGCCCGAGGTAG 59.609 60.000 0.00 0.00 37.58 3.18
2487 3672 0.033405 AAGCCCGAGGTAGTCTAGCA 60.033 55.000 11.52 0.00 0.00 3.49
2495 3680 3.378742 CGAGGTAGTCTAGCATGTGAACT 59.621 47.826 11.52 0.00 0.00 3.01
2496 3681 4.575236 CGAGGTAGTCTAGCATGTGAACTA 59.425 45.833 11.52 0.00 0.00 2.24
2497 3682 5.504337 CGAGGTAGTCTAGCATGTGAACTAC 60.504 48.000 11.52 15.49 0.00 2.73
2498 3683 5.511363 AGGTAGTCTAGCATGTGAACTACT 58.489 41.667 19.63 9.65 31.94 2.57
2499 3684 5.591067 AGGTAGTCTAGCATGTGAACTACTC 59.409 44.000 19.63 13.83 31.94 2.59
2500 3685 4.993029 AGTCTAGCATGTGAACTACTCC 57.007 45.455 0.00 0.00 0.00 3.85
2501 3686 3.702045 AGTCTAGCATGTGAACTACTCCC 59.298 47.826 0.00 0.00 0.00 4.30
2502 3687 3.702045 GTCTAGCATGTGAACTACTCCCT 59.298 47.826 0.00 0.00 0.00 4.20
2503 3688 3.954904 TCTAGCATGTGAACTACTCCCTC 59.045 47.826 0.00 0.00 0.00 4.30
2504 3689 1.834263 AGCATGTGAACTACTCCCTCC 59.166 52.381 0.00 0.00 0.00 4.30
2505 3690 1.471676 GCATGTGAACTACTCCCTCCG 60.472 57.143 0.00 0.00 0.00 4.63
2506 3691 1.825474 CATGTGAACTACTCCCTCCGT 59.175 52.381 0.00 0.00 0.00 4.69
2507 3692 1.542492 TGTGAACTACTCCCTCCGTC 58.458 55.000 0.00 0.00 0.00 4.79
2508 3693 1.075050 TGTGAACTACTCCCTCCGTCT 59.925 52.381 0.00 0.00 0.00 4.18
2509 3694 1.473278 GTGAACTACTCCCTCCGTCTG 59.527 57.143 0.00 0.00 0.00 3.51
2510 3695 1.353358 TGAACTACTCCCTCCGTCTGA 59.647 52.381 0.00 0.00 0.00 3.27
2511 3696 2.224942 TGAACTACTCCCTCCGTCTGAA 60.225 50.000 0.00 0.00 0.00 3.02
2512 3697 2.599408 ACTACTCCCTCCGTCTGAAA 57.401 50.000 0.00 0.00 0.00 2.69
2513 3698 2.885616 ACTACTCCCTCCGTCTGAAAA 58.114 47.619 0.00 0.00 0.00 2.29
2514 3699 3.442076 ACTACTCCCTCCGTCTGAAAAT 58.558 45.455 0.00 0.00 0.00 1.82
2515 3700 4.607239 ACTACTCCCTCCGTCTGAAAATA 58.393 43.478 0.00 0.00 0.00 1.40
2516 3701 3.889520 ACTCCCTCCGTCTGAAAATAC 57.110 47.619 0.00 0.00 0.00 1.89
2517 3702 3.442076 ACTCCCTCCGTCTGAAAATACT 58.558 45.455 0.00 0.00 0.00 2.12
2518 3703 3.838903 ACTCCCTCCGTCTGAAAATACTT 59.161 43.478 0.00 0.00 0.00 2.24
2519 3704 4.184629 CTCCCTCCGTCTGAAAATACTTG 58.815 47.826 0.00 0.00 0.00 3.16
2520 3705 3.581332 TCCCTCCGTCTGAAAATACTTGT 59.419 43.478 0.00 0.00 0.00 3.16
2521 3706 3.933332 CCCTCCGTCTGAAAATACTTGTC 59.067 47.826 0.00 0.00 0.00 3.18
2522 3707 4.322801 CCCTCCGTCTGAAAATACTTGTCT 60.323 45.833 0.00 0.00 0.00 3.41
2523 3708 5.238583 CCTCCGTCTGAAAATACTTGTCTT 58.761 41.667 0.00 0.00 0.00 3.01
2524 3709 6.395629 CCTCCGTCTGAAAATACTTGTCTTA 58.604 40.000 0.00 0.00 0.00 2.10
2525 3710 6.531948 CCTCCGTCTGAAAATACTTGTCTTAG 59.468 42.308 0.00 0.00 0.00 2.18
2526 3711 7.223260 TCCGTCTGAAAATACTTGTCTTAGA 57.777 36.000 0.00 0.00 0.00 2.10
2527 3712 7.663827 TCCGTCTGAAAATACTTGTCTTAGAA 58.336 34.615 0.00 0.00 0.00 2.10
2528 3713 8.145767 TCCGTCTGAAAATACTTGTCTTAGAAA 58.854 33.333 0.00 0.00 0.00 2.52
2529 3714 8.936864 CCGTCTGAAAATACTTGTCTTAGAAAT 58.063 33.333 0.00 0.00 0.00 2.17
2530 3715 9.746711 CGTCTGAAAATACTTGTCTTAGAAATG 57.253 33.333 0.00 0.00 0.00 2.32
2534 3719 9.793259 TGAAAATACTTGTCTTAGAAATGGAGT 57.207 29.630 0.00 0.00 0.00 3.85
2548 3733 3.961576 GGAGTATTTCCGGACGGAG 57.038 57.895 13.64 0.00 46.06 4.63
2549 3734 0.388294 GGAGTATTTCCGGACGGAGG 59.612 60.000 13.64 0.00 46.06 4.30
2550 3735 0.388294 GAGTATTTCCGGACGGAGGG 59.612 60.000 13.64 0.00 46.06 4.30
2551 3736 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
2552 3737 0.388294 GTATTTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
2562 3747 2.029623 GACGGAGGGAGTAGTATTGCA 58.970 52.381 0.00 0.00 0.00 4.08
2657 3842 2.408050 CTGCGAGCTGTGTTTACTTCT 58.592 47.619 0.00 0.00 0.00 2.85
2661 3846 4.235360 GCGAGCTGTGTTTACTTCTAAGA 58.765 43.478 0.00 0.00 0.00 2.10
2700 3885 0.467384 CATCGACAGGCTGGAGGAAT 59.533 55.000 20.34 2.02 0.00 3.01
2730 3915 8.231007 TCTCCCAGAAGAAGATACAGATATTCT 58.769 37.037 0.00 0.00 43.86 2.40
2747 3932 1.537643 CTCTAGGATCCCCAGGGGC 60.538 68.421 21.90 6.63 43.94 5.80
2855 4040 4.495422 GTTGTCGTCATGAGTTGGTCTAT 58.505 43.478 0.00 0.00 0.00 1.98
2933 4118 1.545136 TGTACCGTCACCTGCGAATTA 59.455 47.619 0.00 0.00 0.00 1.40
2942 4127 5.276395 CGTCACCTGCGAATTATACAAGAAG 60.276 44.000 0.00 0.00 0.00 2.85
2990 4178 3.606153 CGAAGCCTGGTAGTTGTTTTTCG 60.606 47.826 0.00 0.00 0.00 3.46
2997 4185 5.390145 CCTGGTAGTTGTTTTTCGGTAATCG 60.390 44.000 0.00 0.00 40.90 3.34
3030 4218 1.112113 GGCTCTCACTACCGGAATCA 58.888 55.000 9.46 0.00 0.00 2.57
3105 4314 2.029743 CCCCCGTCGGCAAAATATG 58.970 57.895 5.50 0.00 0.00 1.78
3116 4325 1.914257 GCAAAATATGCGTCGGCGTAC 60.914 52.381 12.58 2.92 46.87 3.67
3118 4327 0.103572 AAATATGCGTCGGCGTACCT 59.896 50.000 12.58 0.00 43.09 3.08
3217 4449 4.367023 AAGCGCCGCCGTCAAGTA 62.367 61.111 4.98 0.00 36.67 2.24
3221 4453 1.870901 CGCCGCCGTCAAGTACTAC 60.871 63.158 0.00 0.00 0.00 2.73
3227 4459 1.673923 GCCGTCAAGTACTACCCAACC 60.674 57.143 0.00 0.00 0.00 3.77
3228 4460 1.619827 CCGTCAAGTACTACCCAACCA 59.380 52.381 0.00 0.00 0.00 3.67
3229 4461 2.353406 CCGTCAAGTACTACCCAACCAG 60.353 54.545 0.00 0.00 0.00 4.00
3230 4462 2.353406 CGTCAAGTACTACCCAACCAGG 60.353 54.545 0.00 0.00 37.03 4.45
3231 4463 2.901839 GTCAAGTACTACCCAACCAGGA 59.098 50.000 0.00 0.00 41.22 3.86
3232 4464 3.056035 GTCAAGTACTACCCAACCAGGAG 60.056 52.174 0.00 0.00 41.22 3.69
3234 4466 4.091549 CAAGTACTACCCAACCAGGAGTA 58.908 47.826 0.00 0.00 41.22 2.59
3242 4474 0.892755 CAACCAGGAGTAGCCACGTA 59.107 55.000 0.00 0.00 40.02 3.57
3246 4478 0.747255 CAGGAGTAGCCACGTAGCAT 59.253 55.000 9.06 0.00 40.02 3.79
3249 4481 2.558795 AGGAGTAGCCACGTAGCATATG 59.441 50.000 9.06 0.00 40.02 1.78
3254 4486 4.523173 AGTAGCCACGTAGCATATGTATGT 59.477 41.667 9.06 4.77 39.16 2.29
3263 4495 1.604438 GCATATGTATGTCGACGGCCA 60.604 52.381 11.62 7.18 36.11 5.36
3288 4520 2.919229 CGTCGGCGTAGTTTGAAACTAT 59.081 45.455 19.48 0.00 45.05 2.12
3326 4570 0.320374 CCACGTGGCTTCTCTTGGTA 59.680 55.000 24.02 0.00 0.00 3.25
3330 4574 1.338200 CGTGGCTTCTCTTGGTAGCTT 60.338 52.381 0.00 0.00 35.30 3.74
3707 5066 6.034577 CACAAAGCATAAGCATCATCACAAAG 59.965 38.462 0.00 0.00 45.49 2.77
3714 5073 5.909621 AAGCATCATCACAAAGCATAAGT 57.090 34.783 0.00 0.00 0.00 2.24
3719 5078 7.447545 AGCATCATCACAAAGCATAAGTATCAT 59.552 33.333 0.00 0.00 0.00 2.45
3721 5080 8.780249 CATCATCACAAAGCATAAGTATCATCA 58.220 33.333 0.00 0.00 0.00 3.07
3724 5083 7.920160 TCACAAAGCATAAGTATCATCACAA 57.080 32.000 0.00 0.00 0.00 3.33
3729 5088 9.069078 CAAAGCATAAGTATCATCACAAACAAG 57.931 33.333 0.00 0.00 0.00 3.16
3915 5352 4.077184 CTACCGCCAAGACCGCCA 62.077 66.667 0.00 0.00 0.00 5.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
70 71 1.229076 GTGGTGGTGAAGTTGGGGT 59.771 57.895 0.00 0.00 0.00 4.95
221 223 5.473504 ACACCTAAATGAGCAAGATTTTCGT 59.526 36.000 0.00 0.00 0.00 3.85
310 323 3.431486 CCCTTCCTCCATTCTTCTTCTCG 60.431 52.174 0.00 0.00 0.00 4.04
530 548 1.077787 CCTAATCGGCCCACAGCAA 60.078 57.895 0.00 0.00 46.50 3.91
656 676 6.084277 CGCTACTTAAAAAGGTCAAATCCAC 58.916 40.000 0.00 0.00 0.00 4.02
657 677 5.182380 CCGCTACTTAAAAAGGTCAAATCCA 59.818 40.000 0.00 0.00 0.00 3.41
658 678 5.182570 ACCGCTACTTAAAAAGGTCAAATCC 59.817 40.000 0.00 0.00 0.00 3.01
659 679 6.084277 CACCGCTACTTAAAAAGGTCAAATC 58.916 40.000 0.00 0.00 0.00 2.17
660 680 5.048294 CCACCGCTACTTAAAAAGGTCAAAT 60.048 40.000 0.00 0.00 0.00 2.32
661 681 4.276431 CCACCGCTACTTAAAAAGGTCAAA 59.724 41.667 0.00 0.00 0.00 2.69
662 682 3.816523 CCACCGCTACTTAAAAAGGTCAA 59.183 43.478 0.00 0.00 0.00 3.18
663 683 3.071312 TCCACCGCTACTTAAAAAGGTCA 59.929 43.478 0.00 0.00 0.00 4.02
664 684 3.667360 TCCACCGCTACTTAAAAAGGTC 58.333 45.455 0.00 0.00 0.00 3.85
665 685 3.775261 TCCACCGCTACTTAAAAAGGT 57.225 42.857 0.00 0.00 0.00 3.50
666 686 5.182380 TCAAATCCACCGCTACTTAAAAAGG 59.818 40.000 0.00 0.00 0.00 3.11
667 687 6.084277 GTCAAATCCACCGCTACTTAAAAAG 58.916 40.000 0.00 0.00 0.00 2.27
668 688 5.048573 GGTCAAATCCACCGCTACTTAAAAA 60.049 40.000 0.00 0.00 0.00 1.94
669 689 4.456566 GGTCAAATCCACCGCTACTTAAAA 59.543 41.667 0.00 0.00 0.00 1.52
670 690 4.004982 GGTCAAATCCACCGCTACTTAAA 58.995 43.478 0.00 0.00 0.00 1.52
671 691 3.262405 AGGTCAAATCCACCGCTACTTAA 59.738 43.478 0.00 0.00 39.13 1.85
672 692 2.835764 AGGTCAAATCCACCGCTACTTA 59.164 45.455 0.00 0.00 39.13 2.24
673 693 1.628846 AGGTCAAATCCACCGCTACTT 59.371 47.619 0.00 0.00 39.13 2.24
674 694 1.276622 AGGTCAAATCCACCGCTACT 58.723 50.000 0.00 0.00 39.13 2.57
675 695 2.109425 AAGGTCAAATCCACCGCTAC 57.891 50.000 0.00 0.00 39.13 3.58
676 696 2.871096 AAAGGTCAAATCCACCGCTA 57.129 45.000 0.00 0.00 39.13 4.26
677 697 1.886542 GAAAAGGTCAAATCCACCGCT 59.113 47.619 0.00 0.00 39.13 5.52
678 698 1.611491 TGAAAAGGTCAAATCCACCGC 59.389 47.619 0.00 0.00 39.13 5.68
688 708 9.621629 TGTACTCTTTTTAGATTGAAAAGGTCA 57.378 29.630 8.84 5.18 41.90 4.02
705 725 9.778741 TCTGACATTGTTAGAATTGTACTCTTT 57.221 29.630 8.69 0.00 0.00 2.52
706 726 9.778741 TTCTGACATTGTTAGAATTGTACTCTT 57.221 29.630 17.32 0.00 34.14 2.85
707 727 9.209175 GTTCTGACATTGTTAGAATTGTACTCT 57.791 33.333 22.25 0.00 39.61 3.24
708 728 8.988934 TGTTCTGACATTGTTAGAATTGTACTC 58.011 33.333 22.25 11.26 39.61 2.59
709 729 8.902540 TGTTCTGACATTGTTAGAATTGTACT 57.097 30.769 22.25 0.00 39.61 2.73
710 730 8.774586 ACTGTTCTGACATTGTTAGAATTGTAC 58.225 33.333 22.25 13.03 39.61 2.90
711 731 8.773645 CACTGTTCTGACATTGTTAGAATTGTA 58.226 33.333 22.25 11.45 39.61 2.41
712 732 7.498900 TCACTGTTCTGACATTGTTAGAATTGT 59.501 33.333 22.25 19.70 39.61 2.71
713 733 7.864686 TCACTGTTCTGACATTGTTAGAATTG 58.135 34.615 22.25 19.23 39.61 2.32
714 734 8.450578 TTCACTGTTCTGACATTGTTAGAATT 57.549 30.769 22.25 10.68 39.61 2.17
715 735 8.627208 ATTCACTGTTCTGACATTGTTAGAAT 57.373 30.769 22.25 8.25 39.61 2.40
716 736 8.450578 AATTCACTGTTCTGACATTGTTAGAA 57.549 30.769 17.32 17.32 37.61 2.10
717 737 7.095649 CGAATTCACTGTTCTGACATTGTTAGA 60.096 37.037 7.16 7.16 37.61 2.10
718 738 7.011773 CGAATTCACTGTTCTGACATTGTTAG 58.988 38.462 6.22 2.27 37.61 2.34
719 739 6.073276 CCGAATTCACTGTTCTGACATTGTTA 60.073 38.462 6.22 0.00 37.61 2.41
720 740 5.277974 CCGAATTCACTGTTCTGACATTGTT 60.278 40.000 6.22 0.00 37.61 2.83
721 741 4.214119 CCGAATTCACTGTTCTGACATTGT 59.786 41.667 6.22 0.00 37.61 2.71
722 742 4.715896 CCGAATTCACTGTTCTGACATTG 58.284 43.478 6.22 0.00 37.68 2.82
723 743 3.189287 GCCGAATTCACTGTTCTGACATT 59.811 43.478 6.22 0.00 34.72 2.71
724 744 2.744202 GCCGAATTCACTGTTCTGACAT 59.256 45.455 6.22 0.00 34.72 3.06
725 745 2.143122 GCCGAATTCACTGTTCTGACA 58.857 47.619 6.22 0.00 0.00 3.58
726 746 1.464997 GGCCGAATTCACTGTTCTGAC 59.535 52.381 6.22 0.00 0.00 3.51
727 747 1.071542 TGGCCGAATTCACTGTTCTGA 59.928 47.619 6.22 0.00 0.00 3.27
728 748 1.522668 TGGCCGAATTCACTGTTCTG 58.477 50.000 6.22 0.00 0.00 3.02
729 749 2.270352 TTGGCCGAATTCACTGTTCT 57.730 45.000 6.22 0.00 0.00 3.01
730 750 3.363341 TTTTGGCCGAATTCACTGTTC 57.637 42.857 6.16 0.00 0.00 3.18
731 751 4.057432 CAATTTTGGCCGAATTCACTGTT 58.943 39.130 6.16 0.00 0.00 3.16
732 752 3.069443 ACAATTTTGGCCGAATTCACTGT 59.931 39.130 6.16 3.84 0.00 3.55
733 753 3.652274 ACAATTTTGGCCGAATTCACTG 58.348 40.909 6.16 3.24 0.00 3.66
734 754 4.335400 AACAATTTTGGCCGAATTCACT 57.665 36.364 6.16 0.00 0.00 3.41
735 755 4.084066 GGAAACAATTTTGGCCGAATTCAC 60.084 41.667 6.16 0.00 0.00 3.18
736 756 4.061596 GGAAACAATTTTGGCCGAATTCA 58.938 39.130 6.16 0.00 0.00 2.57
737 757 4.061596 TGGAAACAATTTTGGCCGAATTC 58.938 39.130 6.16 6.85 37.44 2.17
738 758 4.078639 TGGAAACAATTTTGGCCGAATT 57.921 36.364 6.16 8.64 37.44 2.17
739 759 3.760580 TGGAAACAATTTTGGCCGAAT 57.239 38.095 6.16 1.89 37.44 3.34
762 782 2.572243 ACGTTCGCTATCGATTCGATC 58.428 47.619 23.82 16.74 43.45 3.69
763 783 6.904062 CGAGACGTTCGCTATCGATTCGAT 62.904 50.000 23.65 23.65 44.86 3.59
764 784 1.596260 AGACGTTCGCTATCGATTCGA 59.404 47.619 11.73 11.73 45.04 3.71
765 785 1.963883 GAGACGTTCGCTATCGATTCG 59.036 52.381 1.71 8.34 45.04 3.34
766 786 1.963883 CGAGACGTTCGCTATCGATTC 59.036 52.381 1.71 0.00 45.04 2.52
767 787 2.020079 CGAGACGTTCGCTATCGATT 57.980 50.000 1.71 0.00 45.04 3.34
768 788 3.730895 CGAGACGTTCGCTATCGAT 57.269 52.632 2.16 2.16 45.04 3.59
781 801 1.310933 TTGAGGCTACCCGTCGAGAC 61.311 60.000 0.00 0.00 35.76 3.36
782 802 0.609957 TTTGAGGCTACCCGTCGAGA 60.610 55.000 0.00 0.00 35.76 4.04
783 803 0.460311 ATTTGAGGCTACCCGTCGAG 59.540 55.000 0.00 0.00 35.76 4.04
784 804 0.458669 GATTTGAGGCTACCCGTCGA 59.541 55.000 0.00 0.00 35.76 4.20
785 805 0.460311 AGATTTGAGGCTACCCGTCG 59.540 55.000 0.00 0.00 35.76 5.12
786 806 1.480954 TCAGATTTGAGGCTACCCGTC 59.519 52.381 0.00 0.00 35.76 4.79
787 807 1.207329 GTCAGATTTGAGGCTACCCGT 59.793 52.381 0.00 0.00 32.98 5.28
788 808 1.802880 CGTCAGATTTGAGGCTACCCG 60.803 57.143 0.00 0.00 33.03 5.28
789 809 1.480954 TCGTCAGATTTGAGGCTACCC 59.519 52.381 1.24 0.00 38.71 3.69
790 810 2.166664 ACTCGTCAGATTTGAGGCTACC 59.833 50.000 1.24 0.00 38.71 3.18
791 811 3.512033 ACTCGTCAGATTTGAGGCTAC 57.488 47.619 1.24 0.00 38.71 3.58
792 812 3.427638 CGAACTCGTCAGATTTGAGGCTA 60.428 47.826 1.24 0.00 38.71 3.93
793 813 2.672478 CGAACTCGTCAGATTTGAGGCT 60.672 50.000 1.24 0.00 38.71 4.58
794 814 1.656095 CGAACTCGTCAGATTTGAGGC 59.344 52.381 1.24 0.00 38.71 4.70
807 827 4.156664 TCTGGAGAAACTAACGAACTCG 57.843 45.455 0.00 0.00 46.33 4.18
808 828 4.794246 CGATCTGGAGAAACTAACGAACTC 59.206 45.833 0.00 0.00 0.00 3.01
809 829 4.458295 TCGATCTGGAGAAACTAACGAACT 59.542 41.667 0.00 0.00 0.00 3.01
810 830 4.730657 TCGATCTGGAGAAACTAACGAAC 58.269 43.478 0.00 0.00 0.00 3.95
811 831 5.159209 GTTCGATCTGGAGAAACTAACGAA 58.841 41.667 0.00 0.00 35.49 3.85
812 832 4.670992 CGTTCGATCTGGAGAAACTAACGA 60.671 45.833 13.42 0.00 36.64 3.85
813 833 3.542704 CGTTCGATCTGGAGAAACTAACG 59.457 47.826 0.00 0.00 32.64 3.18
814 834 4.483311 ACGTTCGATCTGGAGAAACTAAC 58.517 43.478 0.00 0.00 0.00 2.34
815 835 4.778534 ACGTTCGATCTGGAGAAACTAA 57.221 40.909 0.00 0.00 0.00 2.24
816 836 4.380233 GGAACGTTCGATCTGGAGAAACTA 60.380 45.833 21.34 0.00 0.00 2.24
817 837 3.576648 GAACGTTCGATCTGGAGAAACT 58.423 45.455 13.36 0.00 0.00 2.66
818 838 2.666994 GGAACGTTCGATCTGGAGAAAC 59.333 50.000 21.34 0.00 0.00 2.78
819 839 2.955614 GGAACGTTCGATCTGGAGAAA 58.044 47.619 21.34 0.00 0.00 2.52
820 840 2.649331 GGAACGTTCGATCTGGAGAA 57.351 50.000 21.34 0.00 0.00 2.87
835 855 6.585695 TTAGGACAGGATATATGTCGGAAC 57.414 41.667 12.19 2.22 46.49 3.62
836 856 7.606135 TTTTAGGACAGGATATATGTCGGAA 57.394 36.000 12.19 7.58 46.49 4.30
837 857 7.792364 ATTTTAGGACAGGATATATGTCGGA 57.208 36.000 12.19 3.09 46.49 4.55
838 858 9.587772 CTAATTTTAGGACAGGATATATGTCGG 57.412 37.037 12.19 0.00 46.49 4.79
846 866 9.940974 TGGTACTACTAATTTTAGGACAGGATA 57.059 33.333 10.03 0.00 32.62 2.59
847 867 8.702819 GTGGTACTACTAATTTTAGGACAGGAT 58.297 37.037 1.48 0.00 32.62 3.24
848 868 7.897565 AGTGGTACTACTAATTTTAGGACAGGA 59.102 37.037 10.57 0.00 32.62 3.86
849 869 8.075761 AGTGGTACTACTAATTTTAGGACAGG 57.924 38.462 10.57 0.00 32.62 4.00
850 870 8.196103 GGAGTGGTACTACTAATTTTAGGACAG 58.804 40.741 12.36 0.05 32.62 3.51
851 871 7.675195 TGGAGTGGTACTACTAATTTTAGGACA 59.325 37.037 12.36 0.00 32.62 4.02
852 872 8.071177 TGGAGTGGTACTACTAATTTTAGGAC 57.929 38.462 12.36 0.00 35.08 3.85
853 873 8.669055 TTGGAGTGGTACTACTAATTTTAGGA 57.331 34.615 12.36 0.00 35.08 2.94
854 874 9.379791 CTTTGGAGTGGTACTACTAATTTTAGG 57.620 37.037 12.36 0.00 35.08 2.69
855 875 9.939802 ACTTTGGAGTGGTACTACTAATTTTAG 57.060 33.333 12.36 7.76 33.99 1.85
858 878 9.716531 GTAACTTTGGAGTGGTACTACTAATTT 57.283 33.333 12.36 6.54 35.91 1.82
859 879 8.873144 TGTAACTTTGGAGTGGTACTACTAATT 58.127 33.333 12.36 3.74 35.91 1.40
860 880 8.426569 TGTAACTTTGGAGTGGTACTACTAAT 57.573 34.615 12.36 0.00 35.91 1.73
861 881 7.838079 TGTAACTTTGGAGTGGTACTACTAA 57.162 36.000 12.36 1.04 35.91 2.24
862 882 7.039504 CCTTGTAACTTTGGAGTGGTACTACTA 60.040 40.741 12.36 0.00 35.91 1.82
863 883 6.239515 CCTTGTAACTTTGGAGTGGTACTACT 60.240 42.308 12.22 12.22 35.91 2.57
864 884 5.930569 CCTTGTAACTTTGGAGTGGTACTAC 59.069 44.000 0.19 0.19 35.91 2.73
865 885 5.511888 GCCTTGTAACTTTGGAGTGGTACTA 60.512 44.000 0.00 0.00 35.91 1.82
866 886 4.745783 GCCTTGTAACTTTGGAGTGGTACT 60.746 45.833 0.00 0.00 35.91 2.73
867 887 3.501062 GCCTTGTAACTTTGGAGTGGTAC 59.499 47.826 0.00 0.00 35.91 3.34
868 888 3.136809 TGCCTTGTAACTTTGGAGTGGTA 59.863 43.478 0.00 0.00 35.91 3.25
869 889 2.092103 TGCCTTGTAACTTTGGAGTGGT 60.092 45.455 0.00 0.00 35.91 4.16
870 890 2.582052 TGCCTTGTAACTTTGGAGTGG 58.418 47.619 0.00 0.00 35.91 4.00
871 891 3.820467 TGATGCCTTGTAACTTTGGAGTG 59.180 43.478 0.00 0.00 35.91 3.51
872 892 3.821033 GTGATGCCTTGTAACTTTGGAGT 59.179 43.478 0.00 0.00 37.87 3.85
873 893 3.120199 CGTGATGCCTTGTAACTTTGGAG 60.120 47.826 0.00 0.00 0.00 3.86
874 894 2.811431 CGTGATGCCTTGTAACTTTGGA 59.189 45.455 0.00 0.00 0.00 3.53
875 895 2.668279 GCGTGATGCCTTGTAACTTTGG 60.668 50.000 0.00 0.00 37.76 3.28
876 896 2.584791 GCGTGATGCCTTGTAACTTTG 58.415 47.619 0.00 0.00 37.76 2.77
877 897 2.989422 GCGTGATGCCTTGTAACTTT 57.011 45.000 0.00 0.00 37.76 2.66
888 908 3.500982 TGAGCAAAATAAAGCGTGATGC 58.499 40.909 0.00 0.00 46.98 3.91
889 909 5.156355 ACTTGAGCAAAATAAAGCGTGATG 58.844 37.500 0.00 0.00 35.48 3.07
890 910 5.376854 ACTTGAGCAAAATAAAGCGTGAT 57.623 34.783 0.00 0.00 35.48 3.06
891 911 4.829064 ACTTGAGCAAAATAAAGCGTGA 57.171 36.364 0.00 0.00 35.48 4.35
892 912 4.382754 GGAACTTGAGCAAAATAAAGCGTG 59.617 41.667 0.00 0.00 35.48 5.34
893 913 4.546570 GGAACTTGAGCAAAATAAAGCGT 58.453 39.130 0.00 0.00 35.48 5.07
894 914 3.920412 GGGAACTTGAGCAAAATAAAGCG 59.080 43.478 0.00 0.00 35.48 4.68
895 915 4.245660 GGGGAACTTGAGCAAAATAAAGC 58.754 43.478 0.00 0.00 0.00 3.51
896 916 4.022329 ACGGGGAACTTGAGCAAAATAAAG 60.022 41.667 0.00 0.00 0.00 1.85
897 917 3.892588 ACGGGGAACTTGAGCAAAATAAA 59.107 39.130 0.00 0.00 0.00 1.40
898 918 3.254657 CACGGGGAACTTGAGCAAAATAA 59.745 43.478 0.00 0.00 0.00 1.40
899 919 2.817258 CACGGGGAACTTGAGCAAAATA 59.183 45.455 0.00 0.00 0.00 1.40
900 920 1.613437 CACGGGGAACTTGAGCAAAAT 59.387 47.619 0.00 0.00 0.00 1.82
901 921 1.028905 CACGGGGAACTTGAGCAAAA 58.971 50.000 0.00 0.00 0.00 2.44
902 922 1.452145 GCACGGGGAACTTGAGCAAA 61.452 55.000 0.00 0.00 0.00 3.68
903 923 1.896660 GCACGGGGAACTTGAGCAA 60.897 57.895 0.00 0.00 0.00 3.91
904 924 2.281484 GCACGGGGAACTTGAGCA 60.281 61.111 0.00 0.00 0.00 4.26
905 925 3.423154 CGCACGGGGAACTTGAGC 61.423 66.667 0.00 0.00 0.00 4.26
906 926 0.320073 TAACGCACGGGGAACTTGAG 60.320 55.000 0.00 0.00 0.00 3.02
907 927 0.600782 GTAACGCACGGGGAACTTGA 60.601 55.000 0.00 0.00 0.00 3.02
908 928 1.864176 GTAACGCACGGGGAACTTG 59.136 57.895 0.00 0.00 0.00 3.16
909 929 4.366603 GTAACGCACGGGGAACTT 57.633 55.556 0.00 0.00 0.00 2.66
921 941 3.123116 GGAGAGGAAGAAAAAGCGTAACG 59.877 47.826 0.00 0.00 0.00 3.18
922 942 3.123116 CGGAGAGGAAGAAAAAGCGTAAC 59.877 47.826 0.00 0.00 0.00 2.50
923 943 3.323243 CGGAGAGGAAGAAAAAGCGTAA 58.677 45.455 0.00 0.00 0.00 3.18
924 944 2.353406 CCGGAGAGGAAGAAAAAGCGTA 60.353 50.000 0.00 0.00 45.00 4.42
925 945 1.608283 CCGGAGAGGAAGAAAAAGCGT 60.608 52.381 0.00 0.00 45.00 5.07
926 946 1.079503 CCGGAGAGGAAGAAAAAGCG 58.920 55.000 0.00 0.00 45.00 4.68
927 947 2.186532 ACCGGAGAGGAAGAAAAAGC 57.813 50.000 9.46 0.00 45.00 3.51
928 948 4.538746 AGTACCGGAGAGGAAGAAAAAG 57.461 45.455 9.46 0.00 45.00 2.27
929 949 4.968971 AAGTACCGGAGAGGAAGAAAAA 57.031 40.909 9.46 0.00 45.00 1.94
930 950 7.722949 TTATAAGTACCGGAGAGGAAGAAAA 57.277 36.000 9.46 0.00 45.00 2.29
931 951 7.909485 ATTATAAGTACCGGAGAGGAAGAAA 57.091 36.000 9.46 0.00 45.00 2.52
932 952 9.425248 TTTATTATAAGTACCGGAGAGGAAGAA 57.575 33.333 9.46 0.00 45.00 2.52
933 953 9.425248 TTTTATTATAAGTACCGGAGAGGAAGA 57.575 33.333 9.46 0.00 45.00 2.87
934 954 9.694137 CTTTTATTATAAGTACCGGAGAGGAAG 57.306 37.037 9.46 0.00 45.00 3.46
935 955 9.205513 ACTTTTATTATAAGTACCGGAGAGGAA 57.794 33.333 9.46 0.00 45.00 3.36
936 956 8.773033 ACTTTTATTATAAGTACCGGAGAGGA 57.227 34.615 9.46 0.00 45.00 3.71
947 967 9.545611 CGGCGTGTTTTAACTTTTATTATAAGT 57.454 29.630 0.00 0.00 37.43 2.24
948 968 9.545611 ACGGCGTGTTTTAACTTTTATTATAAG 57.454 29.630 13.76 0.00 0.00 1.73
949 969 9.327529 CACGGCGTGTTTTAACTTTTATTATAA 57.672 29.630 30.56 0.00 0.00 0.98
950 970 7.961827 CCACGGCGTGTTTTAACTTTTATTATA 59.038 33.333 34.74 0.00 0.00 0.98
951 971 6.802834 CCACGGCGTGTTTTAACTTTTATTAT 59.197 34.615 34.74 0.00 0.00 1.28
952 972 6.141462 CCACGGCGTGTTTTAACTTTTATTA 58.859 36.000 34.74 0.00 0.00 0.98
953 973 4.977347 CCACGGCGTGTTTTAACTTTTATT 59.023 37.500 34.74 0.00 0.00 1.40
954 974 4.538917 CCACGGCGTGTTTTAACTTTTAT 58.461 39.130 34.74 0.00 0.00 1.40
955 975 3.243002 CCCACGGCGTGTTTTAACTTTTA 60.243 43.478 34.74 0.00 0.00 1.52
956 976 2.479901 CCCACGGCGTGTTTTAACTTTT 60.480 45.455 34.74 0.00 0.00 2.27
957 977 1.065851 CCCACGGCGTGTTTTAACTTT 59.934 47.619 34.74 0.00 0.00 2.66
958 978 0.664224 CCCACGGCGTGTTTTAACTT 59.336 50.000 34.74 0.00 0.00 2.66
959 979 1.788067 GCCCACGGCGTGTTTTAACT 61.788 55.000 34.74 0.00 39.62 2.24
960 980 1.370778 GCCCACGGCGTGTTTTAAC 60.371 57.895 34.74 15.56 39.62 2.01
961 981 3.032339 GCCCACGGCGTGTTTTAA 58.968 55.556 34.74 0.00 39.62 1.52
971 991 3.310860 GAGTACAGGTGGCCCACGG 62.311 68.421 7.99 5.16 34.83 4.94
972 992 2.264794 GAGTACAGGTGGCCCACG 59.735 66.667 7.99 0.00 34.83 4.94
973 993 2.221299 TGGAGTACAGGTGGCCCAC 61.221 63.158 4.93 4.93 0.00 4.61
974 994 2.205749 TGGAGTACAGGTGGCCCA 59.794 61.111 0.00 0.00 0.00 5.36
975 995 2.669240 GTGGAGTACAGGTGGCCC 59.331 66.667 0.00 0.00 0.00 5.80
976 996 1.489560 AAGGTGGAGTACAGGTGGCC 61.490 60.000 0.00 0.00 0.00 5.36
977 997 0.321653 CAAGGTGGAGTACAGGTGGC 60.322 60.000 0.00 0.00 0.00 5.01
978 998 1.002087 GTCAAGGTGGAGTACAGGTGG 59.998 57.143 0.00 0.00 0.00 4.61
979 999 1.971357 AGTCAAGGTGGAGTACAGGTG 59.029 52.381 0.00 0.00 0.00 4.00
980 1000 2.400467 AGTCAAGGTGGAGTACAGGT 57.600 50.000 0.00 0.00 0.00 4.00
981 1001 3.133003 CCATAGTCAAGGTGGAGTACAGG 59.867 52.174 0.00 0.00 34.94 4.00
982 1002 3.430929 GCCATAGTCAAGGTGGAGTACAG 60.431 52.174 0.00 0.00 34.94 2.74
983 1003 2.500098 GCCATAGTCAAGGTGGAGTACA 59.500 50.000 0.00 0.00 34.94 2.90
984 1004 2.158943 GGCCATAGTCAAGGTGGAGTAC 60.159 54.545 0.00 0.00 34.94 2.73
985 1005 2.116238 GGCCATAGTCAAGGTGGAGTA 58.884 52.381 0.00 0.00 34.94 2.59
1020 1040 4.436998 GACCTGTCCACGGCGAGG 62.437 72.222 17.68 17.68 0.00 4.63
1083 1103 0.487325 TGAGGAAGGTGAGGAGGACA 59.513 55.000 0.00 0.00 0.00 4.02
1120 1140 2.431683 TGCCAAGCAGGACTGGAC 59.568 61.111 1.01 0.00 41.22 4.02
1185 1205 3.465403 CTGAGGTCCCTGAGGCGG 61.465 72.222 0.00 0.00 0.00 6.13
1195 1215 1.078567 CCTTGAGCAGCCTGAGGTC 60.079 63.158 0.00 0.00 0.00 3.85
1198 1218 0.035881 TCAACCTTGAGCAGCCTGAG 59.964 55.000 0.00 0.00 32.50 3.35
1199 1219 0.035881 CTCAACCTTGAGCAGCCTGA 59.964 55.000 0.00 0.00 46.97 3.86
1241 1261 4.293648 CGTCGGTGTGAGTGGGCA 62.294 66.667 0.00 0.00 0.00 5.36
1242 1262 3.916392 CTCGTCGGTGTGAGTGGGC 62.916 68.421 0.00 0.00 0.00 5.36
1246 1266 1.281960 CGAACTCGTCGGTGTGAGT 59.718 57.895 0.00 0.00 46.98 3.41
1284 1304 8.340002 TCATAGTAGCATATACTCCAAGAGGAT 58.660 37.037 0.00 0.00 44.70 3.24
1326 1438 6.887013 TCGTACCTGAAAGAGTACTCTATCT 58.113 40.000 25.42 13.11 39.39 1.98
1328 1440 8.522542 AAATCGTACCTGAAAGAGTACTCTAT 57.477 34.615 25.42 12.87 39.39 1.98
1345 1457 7.599630 TGGTATTTTGTCAGGTAAATCGTAC 57.400 36.000 0.00 0.00 0.00 3.67
1367 1493 0.809385 CTTGCAGAGCCTGACAATGG 59.191 55.000 6.40 0.00 32.44 3.16
1438 1564 2.045524 CAGGAGTCTGGCCATGAGTAT 58.954 52.381 5.51 0.00 37.36 2.12
1442 1568 1.211212 CATTCAGGAGTCTGGCCATGA 59.789 52.381 5.51 2.33 41.23 3.07
1459 1585 2.162681 GCCTGCTTGGTTGTAGACATT 58.837 47.619 0.00 0.00 38.35 2.71
1518 1647 3.321682 TGATCGTCATGGCATCACTGATA 59.678 43.478 0.00 0.00 0.00 2.15
1529 1658 1.024046 TGCCGGTTTGATCGTCATGG 61.024 55.000 1.90 0.00 0.00 3.66
1536 1665 0.679640 TGGTGGATGCCGGTTTGATC 60.680 55.000 1.90 0.00 0.00 2.92
1601 1730 0.394899 GACCTCCTCAAAGCCATGGG 60.395 60.000 15.13 0.00 0.00 4.00
1645 1774 9.745880 AACGTTGTACTAAATCGATGATCTTAT 57.254 29.630 0.00 0.00 0.00 1.73
1666 1795 3.447586 TCTGATCCTAGCTTAGCAACGTT 59.552 43.478 7.07 0.00 0.00 3.99
1670 1799 5.696030 TCTACTCTGATCCTAGCTTAGCAA 58.304 41.667 7.07 0.00 0.00 3.91
1671 1800 5.311844 TCTACTCTGATCCTAGCTTAGCA 57.688 43.478 7.07 0.00 0.00 3.49
1673 1802 7.994425 TGATTCTACTCTGATCCTAGCTTAG 57.006 40.000 0.00 0.00 0.00 2.18
1675 1804 6.838612 AGTTGATTCTACTCTGATCCTAGCTT 59.161 38.462 0.00 0.00 0.00 3.74
1676 1805 6.372931 AGTTGATTCTACTCTGATCCTAGCT 58.627 40.000 0.00 0.00 0.00 3.32
1706 1839 9.268268 CACCAAAAACAAGTACAGACTATTAGA 57.732 33.333 0.00 0.00 33.58 2.10
1724 1864 9.535878 GAACATGAATAAAACCTACACCAAAAA 57.464 29.630 0.00 0.00 0.00 1.94
1753 1893 2.168521 TGTATCTGAAGAAAGGGAGGCG 59.831 50.000 0.00 0.00 0.00 5.52
1780 1920 8.052748 AGTTTCCTTTGGTAGTATGCATCAATA 58.947 33.333 0.19 0.00 0.00 1.90
1782 1922 6.150976 CAGTTTCCTTTGGTAGTATGCATCAA 59.849 38.462 0.19 0.00 0.00 2.57
1791 1931 6.681729 TGATAGTCAGTTTCCTTTGGTAGT 57.318 37.500 0.00 0.00 0.00 2.73
1793 1933 7.252612 TGATGATAGTCAGTTTCCTTTGGTA 57.747 36.000 0.00 0.00 0.00 3.25
1794 1934 6.126863 TGATGATAGTCAGTTTCCTTTGGT 57.873 37.500 0.00 0.00 0.00 3.67
1795 1935 5.587844 CCTGATGATAGTCAGTTTCCTTTGG 59.412 44.000 3.54 0.00 43.22 3.28
1797 1937 5.045286 AGCCTGATGATAGTCAGTTTCCTTT 60.045 40.000 3.54 0.00 43.22 3.11
1800 1940 4.125703 CAGCCTGATGATAGTCAGTTTCC 58.874 47.826 3.54 0.00 43.22 3.13
1811 1955 1.453379 GCACCAGCAGCCTGATGAT 60.453 57.895 12.35 0.00 41.77 2.45
1815 1959 2.033141 GAAGCACCAGCAGCCTGA 59.967 61.111 0.00 0.00 45.49 3.86
1834 1981 7.606858 TCTGATTGAAGATGATCTGTTTCAC 57.393 36.000 0.00 0.00 29.96 3.18
1862 2009 1.266175 AGTATTGATCGGACGGTAGCG 59.734 52.381 13.69 13.69 0.00 4.26
1894 2041 5.356470 AGATCTTTATCTTGCTTTCTGGTGC 59.644 40.000 0.00 0.00 39.55 5.01
1911 2058 4.398358 TCGTCGGTGTGATAGAAGATCTTT 59.602 41.667 9.87 2.63 0.00 2.52
1932 2079 4.631377 TCTGCATACATGACCTTCTTTTCG 59.369 41.667 0.00 0.00 0.00 3.46
1953 2100 1.470098 GCGAAGTCATGGTTGCATTCT 59.530 47.619 0.00 0.00 0.00 2.40
1968 2115 1.743252 GAGGAGCAGGTTGGCGAAG 60.743 63.158 0.00 0.00 39.27 3.79
1996 2143 3.828875 AACAGAGCTGATAGGGTAAGC 57.171 47.619 4.21 0.00 37.20 3.09
2035 3214 2.207501 CTGCCAAGATGGGGAGTGCT 62.208 60.000 0.00 0.00 41.12 4.40
2061 3240 9.146984 TCGGTAACACTTTTATAGAGATTGTTG 57.853 33.333 0.00 0.00 0.00 3.33
2073 3252 4.154015 TCGTCGAGATCGGTAACACTTTTA 59.846 41.667 1.91 0.00 40.29 1.52
2118 3297 0.108585 GCAACTTGGTCCTGGTGAGA 59.891 55.000 4.94 0.00 0.00 3.27
2126 3305 1.909700 TGGATTCAGCAACTTGGTCC 58.090 50.000 0.00 0.00 0.00 4.46
2129 3308 1.401931 CGCTTGGATTCAGCAACTTGG 60.402 52.381 0.00 0.00 0.00 3.61
2130 3309 1.267806 ACGCTTGGATTCAGCAACTTG 59.732 47.619 0.00 0.00 0.00 3.16
2149 3328 1.126846 CAAAGCATCGAACGGTCTGAC 59.873 52.381 0.00 0.00 0.00 3.51
2151 3330 1.391485 CTCAAAGCATCGAACGGTCTG 59.609 52.381 0.00 0.00 0.00 3.51
2164 3343 0.040958 CACACGAGGTTGCTCAAAGC 60.041 55.000 0.00 0.00 42.82 3.51
2165 3344 1.261619 GACACACGAGGTTGCTCAAAG 59.738 52.381 0.00 0.00 0.00 2.77
2282 3461 4.976224 AAAACGCCTTACATTATGGGAC 57.024 40.909 0.00 0.00 0.00 4.46
2326 3505 4.767928 TGTCCCATAATGTAAGGCGTTTTT 59.232 37.500 0.00 0.00 0.00 1.94
2327 3506 4.337145 TGTCCCATAATGTAAGGCGTTTT 58.663 39.130 0.00 0.00 0.00 2.43
2328 3507 3.945285 CTGTCCCATAATGTAAGGCGTTT 59.055 43.478 0.00 0.00 0.00 3.60
2329 3508 3.199071 TCTGTCCCATAATGTAAGGCGTT 59.801 43.478 0.00 0.00 0.00 4.84
2330 3509 2.769663 TCTGTCCCATAATGTAAGGCGT 59.230 45.455 0.00 0.00 0.00 5.68
2331 3510 3.393800 CTCTGTCCCATAATGTAAGGCG 58.606 50.000 0.00 0.00 0.00 5.52
2332 3511 3.496870 CCCTCTGTCCCATAATGTAAGGC 60.497 52.174 0.00 0.00 0.00 4.35
2333 3512 3.973973 TCCCTCTGTCCCATAATGTAAGG 59.026 47.826 0.00 0.00 0.00 2.69
2334 3513 4.656112 ACTCCCTCTGTCCCATAATGTAAG 59.344 45.833 0.00 0.00 0.00 2.34
2335 3514 4.631234 ACTCCCTCTGTCCCATAATGTAA 58.369 43.478 0.00 0.00 0.00 2.41
2336 3515 4.280789 ACTCCCTCTGTCCCATAATGTA 57.719 45.455 0.00 0.00 0.00 2.29
2337 3516 3.136641 ACTCCCTCTGTCCCATAATGT 57.863 47.619 0.00 0.00 0.00 2.71
2338 3517 3.005897 CGTACTCCCTCTGTCCCATAATG 59.994 52.174 0.00 0.00 0.00 1.90
2339 3518 3.231818 CGTACTCCCTCTGTCCCATAAT 58.768 50.000 0.00 0.00 0.00 1.28
2340 3519 2.024655 ACGTACTCCCTCTGTCCCATAA 60.025 50.000 0.00 0.00 0.00 1.90
2341 3520 1.567649 ACGTACTCCCTCTGTCCCATA 59.432 52.381 0.00 0.00 0.00 2.74
2342 3521 0.335361 ACGTACTCCCTCTGTCCCAT 59.665 55.000 0.00 0.00 0.00 4.00
2343 3522 0.323178 GACGTACTCCCTCTGTCCCA 60.323 60.000 0.00 0.00 0.00 4.37
2344 3523 1.375098 CGACGTACTCCCTCTGTCCC 61.375 65.000 0.00 0.00 0.00 4.46
2345 3524 0.676151 ACGACGTACTCCCTCTGTCC 60.676 60.000 0.00 0.00 0.00 4.02
2346 3525 1.932511 CTACGACGTACTCCCTCTGTC 59.067 57.143 2.97 0.00 0.00 3.51
2347 3526 1.406614 CCTACGACGTACTCCCTCTGT 60.407 57.143 2.97 0.00 0.00 3.41
2348 3527 1.297664 CCTACGACGTACTCCCTCTG 58.702 60.000 2.97 0.00 0.00 3.35
2349 3528 0.463474 GCCTACGACGTACTCCCTCT 60.463 60.000 2.97 0.00 0.00 3.69
2350 3529 1.770085 CGCCTACGACGTACTCCCTC 61.770 65.000 2.97 0.00 43.93 4.30
2351 3530 1.817099 CGCCTACGACGTACTCCCT 60.817 63.158 2.97 0.00 43.93 4.20
2352 3531 1.815421 TCGCCTACGACGTACTCCC 60.815 63.158 2.97 0.00 45.12 4.30
2353 3532 3.799753 TCGCCTACGACGTACTCC 58.200 61.111 2.97 0.00 45.12 3.85
2392 3571 3.744846 GCTTCATCAGAGACATGGCAGAT 60.745 47.826 0.00 0.00 0.00 2.90
2422 3601 3.560636 ACCATATCCTTGTTTCTCCCG 57.439 47.619 0.00 0.00 0.00 5.14
2436 3615 6.240002 GGAAATGTCCATCTCCAGTACCATAT 60.240 42.308 0.00 0.00 44.26 1.78
2459 3638 2.066393 CCTCGGGCTTCCTGATGGA 61.066 63.158 0.00 0.00 38.36 3.41
2473 3652 3.378742 AGTTCACATGCTAGACTACCTCG 59.621 47.826 0.00 0.00 0.00 4.63
2480 3659 3.702045 AGGGAGTAGTTCACATGCTAGAC 59.298 47.826 0.00 0.00 0.00 2.59
2487 3672 2.100989 GACGGAGGGAGTAGTTCACAT 58.899 52.381 0.00 0.00 0.00 3.21
2495 3680 4.607239 AGTATTTTCAGACGGAGGGAGTA 58.393 43.478 0.00 0.00 0.00 2.59
2496 3681 3.442076 AGTATTTTCAGACGGAGGGAGT 58.558 45.455 0.00 0.00 0.00 3.85
2497 3682 4.184629 CAAGTATTTTCAGACGGAGGGAG 58.815 47.826 0.00 0.00 0.00 4.30
2498 3683 3.581332 ACAAGTATTTTCAGACGGAGGGA 59.419 43.478 0.00 0.00 0.00 4.20
2499 3684 3.933332 GACAAGTATTTTCAGACGGAGGG 59.067 47.826 0.00 0.00 0.00 4.30
2500 3685 4.822026 AGACAAGTATTTTCAGACGGAGG 58.178 43.478 0.00 0.00 0.00 4.30
2501 3686 7.313646 TCTAAGACAAGTATTTTCAGACGGAG 58.686 38.462 0.00 0.00 0.00 4.63
2502 3687 7.223260 TCTAAGACAAGTATTTTCAGACGGA 57.777 36.000 0.00 0.00 0.00 4.69
2503 3688 7.884816 TTCTAAGACAAGTATTTTCAGACGG 57.115 36.000 0.00 0.00 0.00 4.79
2504 3689 9.746711 CATTTCTAAGACAAGTATTTTCAGACG 57.253 33.333 0.00 0.00 0.00 4.18
2508 3693 9.793259 ACTCCATTTCTAAGACAAGTATTTTCA 57.207 29.630 0.00 0.00 0.00 2.69
2526 3711 2.502538 TCCGTCCGGAAATACTCCATTT 59.497 45.455 5.23 0.00 45.74 2.32
2527 3712 2.102588 CTCCGTCCGGAAATACTCCATT 59.897 50.000 5.23 0.00 45.74 3.16
2528 3713 1.687123 CTCCGTCCGGAAATACTCCAT 59.313 52.381 5.23 0.00 45.74 3.41
2529 3714 1.108776 CTCCGTCCGGAAATACTCCA 58.891 55.000 5.23 0.00 45.74 3.86
2530 3715 0.388294 CCTCCGTCCGGAAATACTCC 59.612 60.000 5.23 0.00 44.66 3.85
2531 3716 0.388294 CCCTCCGTCCGGAAATACTC 59.612 60.000 5.23 0.00 44.66 2.59
2532 3717 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
2533 3718 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
2534 3719 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
2535 3720 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
2536 3721 0.682209 CTACTCCCTCCGTCCGGAAA 60.682 60.000 5.23 0.00 44.66 3.13
2537 3722 1.077212 CTACTCCCTCCGTCCGGAA 60.077 63.158 5.23 0.00 44.66 4.30
2538 3723 0.982852 TACTACTCCCTCCGTCCGGA 60.983 60.000 0.00 0.00 42.90 5.14
2539 3724 0.110104 ATACTACTCCCTCCGTCCGG 59.890 60.000 0.00 0.00 0.00 5.14
2540 3725 1.607628 CAATACTACTCCCTCCGTCCG 59.392 57.143 0.00 0.00 0.00 4.79
2541 3726 1.340568 GCAATACTACTCCCTCCGTCC 59.659 57.143 0.00 0.00 0.00 4.79
2542 3727 2.029623 TGCAATACTACTCCCTCCGTC 58.970 52.381 0.00 0.00 0.00 4.79
2543 3728 2.032620 CTGCAATACTACTCCCTCCGT 58.967 52.381 0.00 0.00 0.00 4.69
2544 3729 2.307768 TCTGCAATACTACTCCCTCCG 58.692 52.381 0.00 0.00 0.00 4.63
2545 3730 3.707102 AGTTCTGCAATACTACTCCCTCC 59.293 47.826 0.00 0.00 0.00 4.30
2546 3731 6.127423 TGTTAGTTCTGCAATACTACTCCCTC 60.127 42.308 7.00 0.00 0.00 4.30
2547 3732 5.720041 TGTTAGTTCTGCAATACTACTCCCT 59.280 40.000 7.00 0.00 0.00 4.20
2548 3733 5.974108 TGTTAGTTCTGCAATACTACTCCC 58.026 41.667 7.00 0.00 0.00 4.30
2549 3734 8.391106 CAATTGTTAGTTCTGCAATACTACTCC 58.609 37.037 7.00 1.35 33.13 3.85
2550 3735 8.391106 CCAATTGTTAGTTCTGCAATACTACTC 58.609 37.037 4.43 5.29 33.13 2.59
2551 3736 7.883311 ACCAATTGTTAGTTCTGCAATACTACT 59.117 33.333 4.43 0.47 33.13 2.57
2552 3737 8.040716 ACCAATTGTTAGTTCTGCAATACTAC 57.959 34.615 4.43 4.68 33.13 2.73
2562 3747 9.965824 CAAACTGAATTACCAATTGTTAGTTCT 57.034 29.630 15.82 0.00 31.01 3.01
2618 3803 1.066143 AGCAGCGCAACTACCTACAAT 60.066 47.619 11.47 0.00 0.00 2.71
2622 3807 1.447838 GCAGCAGCGCAACTACCTA 60.448 57.895 11.47 0.00 0.00 3.08
2645 3830 4.053295 GCACCGTCTTAGAAGTAAACACA 58.947 43.478 0.00 0.00 0.00 3.72
2649 3834 4.553323 GTGAGCACCGTCTTAGAAGTAAA 58.447 43.478 0.00 0.00 0.00 2.01
2676 3861 2.301296 CCTCCAGCCTGTCGATGAATAT 59.699 50.000 0.00 0.00 0.00 1.28
2700 3885 8.789767 ATCTGTATCTTCTTCTGGGAGAAATA 57.210 34.615 0.00 0.00 35.38 1.40
2772 3957 1.672030 TGGCAATGGTGTCTGCTCG 60.672 57.895 0.00 0.00 38.65 5.03
2777 3962 0.473755 TGACAGTGGCAATGGTGTCT 59.526 50.000 19.96 0.00 40.06 3.41
2855 4040 4.499865 GCGTCTTTCAGATATCTGCTACCA 60.500 45.833 25.27 7.35 43.46 3.25
2933 4118 9.712305 GGCTGTATAATGTATCACTTCTTGTAT 57.288 33.333 0.00 0.00 0.00 2.29
2942 4127 3.918591 CGACCGGCTGTATAATGTATCAC 59.081 47.826 0.00 0.00 0.00 3.06
2990 4178 4.798387 GCCAAAACAATCATCACGATTACC 59.202 41.667 0.00 0.00 42.70 2.85
2997 4185 4.217118 AGTGAGAGCCAAAACAATCATCAC 59.783 41.667 0.00 0.00 35.83 3.06
3048 4243 1.364171 CGACGGGAATCAGGGCTAG 59.636 63.158 0.00 0.00 0.00 3.42
3105 4314 4.883300 CTCGAGGTACGCCGACGC 62.883 72.222 3.91 0.00 45.53 5.19
3153 4379 0.589708 TCGGCATAGATGTACGGACG 59.410 55.000 0.00 0.00 33.42 4.79
3200 4426 4.367023 TACTTGACGGCGGCGCTT 62.367 61.111 32.57 19.21 0.00 4.68
3202 4428 3.688475 TAGTACTTGACGGCGGCGC 62.688 63.158 32.57 26.17 0.00 6.53
3203 4429 1.870901 GTAGTACTTGACGGCGGCG 60.871 63.158 31.06 31.06 0.00 6.46
3217 4449 1.569653 GCTACTCCTGGTTGGGTAGT 58.430 55.000 14.65 5.26 39.58 2.73
3221 4453 1.299976 GTGGCTACTCCTGGTTGGG 59.700 63.158 0.00 0.00 36.20 4.12
3227 4459 0.747255 ATGCTACGTGGCTACTCCTG 59.253 55.000 24.82 0.00 35.26 3.86
3228 4460 2.359981 TATGCTACGTGGCTACTCCT 57.640 50.000 24.82 5.37 35.26 3.69
3229 4461 2.296471 ACATATGCTACGTGGCTACTCC 59.704 50.000 24.82 0.00 0.00 3.85
3230 4462 3.644884 ACATATGCTACGTGGCTACTC 57.355 47.619 24.82 0.00 0.00 2.59
3231 4463 4.523173 ACATACATATGCTACGTGGCTACT 59.477 41.667 24.82 11.79 37.19 2.57
3232 4464 4.806330 ACATACATATGCTACGTGGCTAC 58.194 43.478 24.82 0.00 37.19 3.58
3234 4466 3.611766 CGACATACATATGCTACGTGGCT 60.612 47.826 24.82 12.59 37.19 4.75
3242 4474 1.336887 GGCCGTCGACATACATATGCT 60.337 52.381 17.16 0.00 37.19 3.79
3246 4478 0.671796 CCTGGCCGTCGACATACATA 59.328 55.000 17.16 0.00 0.00 2.29
3249 4481 2.585247 GCCTGGCCGTCGACATAC 60.585 66.667 17.16 4.89 0.00 2.39
3398 4666 0.255604 CCACATGGCACCCACTGATA 59.744 55.000 0.00 0.00 35.80 2.15
3400 4668 2.435663 CCACATGGCACCCACTGA 59.564 61.111 0.00 0.00 35.80 3.41
3453 4721 0.604073 TGGCCGTCGACATAGTTTCA 59.396 50.000 17.16 0.81 0.00 2.69
3463 4731 3.845259 GGCACCTATGGCCGTCGA 61.845 66.667 0.00 0.00 45.63 4.20
3707 5066 9.793252 ATTTCTTGTTTGTGATGATACTTATGC 57.207 29.630 0.00 0.00 0.00 3.14
3729 5088 9.443283 CTTGTGTGCTTCTTTATATGCTATTTC 57.557 33.333 0.00 0.00 0.00 2.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.