Multiple sequence alignment - TraesCS4D01G343800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G343800 chr4D 100.000 5380 0 0 1 5380 499496531 499501910 0.000000e+00 9936
1 TraesCS4D01G343800 chr4B 86.824 5047 340 139 465 5330 642451000 642455902 0.000000e+00 5336
2 TraesCS4D01G343800 chr4B 83.168 404 30 21 21 419 642447336 642447706 8.630000e-88 335
3 TraesCS4D01G343800 chr5A 90.268 2795 162 41 1369 4118 680498492 680501221 0.000000e+00 3554
4 TraesCS4D01G343800 chr5A 82.292 1265 102 56 4120 5323 680501254 680502457 0.000000e+00 983
5 TraesCS4D01G343800 chr5A 83.468 248 19 13 1065 1303 680498237 680498471 1.520000e-50 211
6 TraesCS4D01G343800 chr5A 96.774 62 2 0 994 1055 680497934 680497995 2.650000e-18 104


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G343800 chr4D 499496531 499501910 5379 False 9936.0 9936 100.0000 1 5380 1 chr4D.!!$F1 5379
1 TraesCS4D01G343800 chr4B 642447336 642455902 8566 False 2835.5 5336 84.9960 21 5330 2 chr4B.!!$F1 5309
2 TraesCS4D01G343800 chr5A 680497934 680502457 4523 False 1213.0 3554 88.2005 994 5323 4 chr5A.!!$F1 4329

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
510 3766 0.040958 GGTGCGCTTGACTGACAAAG 60.041 55.0 9.73 0.00 38.08 2.77 F
1354 4914 0.032017 AGCCCTACCCTCGTGAGATT 60.032 55.0 0.00 0.00 40.84 2.40 F
1364 4924 0.179171 TCGTGAGATTCCTTCGTCGC 60.179 55.0 0.00 0.00 33.31 5.19 F
1603 5182 0.594796 AAAAGTTGCCGCTTTCGCTG 60.595 50.0 3.56 0.00 37.68 5.18 F
2848 6453 0.984230 AAAAGGCCCGACTCTGATGA 59.016 50.0 0.00 0.00 0.00 2.92 F
3719 7336 0.028505 CTTGATTGCGCATTCTCCCG 59.971 55.0 27.05 12.67 0.00 5.14 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1731 5322 0.103208 AAAATCGTGCGCCCAAAACA 59.897 45.000 4.18 0.0 0.00 2.83 R
2928 6533 1.202521 CCCCACTTGAAACTGTTTGCC 60.203 52.381 11.03 0.0 0.00 4.52 R
3341 6948 3.665675 CTTGCCTAGCCGTTCGCCT 62.666 63.158 0.00 0.0 38.78 5.52 R
3473 7080 1.517242 ACTTTGCTTTCTCTGCCTCG 58.483 50.000 0.00 0.0 0.00 4.63 R
4242 7926 1.947597 CTCTTCGCCTCTGCTCTGCT 61.948 60.000 0.00 0.0 34.43 4.24 R
4996 8771 0.725117 GCGTTAGGGTTTGGATCGTG 59.275 55.000 0.00 0.0 0.00 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.750141 TAGTAGGGTAGCCAGTGGAG 57.250 55.000 15.20 0.00 0.00 3.86
35 36 3.070302 AGTGGAGTCTGACTTTCACCTTC 59.930 47.826 26.65 15.36 35.07 3.46
45 46 7.065923 GTCTGACTTTCACCTTCTTGTTTAACT 59.934 37.037 0.00 0.00 0.00 2.24
53 54 7.535139 TCACCTTCTTGTTTAACTTGACTTTG 58.465 34.615 0.00 0.00 0.00 2.77
54 55 7.175990 TCACCTTCTTGTTTAACTTGACTTTGT 59.824 33.333 0.00 0.00 0.00 2.83
56 57 9.185680 ACCTTCTTGTTTAACTTGACTTTGTAT 57.814 29.630 0.00 0.00 0.00 2.29
60 61 8.836413 TCTTGTTTAACTTGACTTTGTATGGAG 58.164 33.333 0.00 0.00 0.00 3.86
61 62 8.514330 TTGTTTAACTTGACTTTGTATGGAGT 57.486 30.769 0.00 0.00 0.00 3.85
62 63 9.616156 TTGTTTAACTTGACTTTGTATGGAGTA 57.384 29.630 0.00 0.00 0.00 2.59
63 64 9.787435 TGTTTAACTTGACTTTGTATGGAGTAT 57.213 29.630 0.00 0.00 0.00 2.12
65 66 8.786826 TTAACTTGACTTTGTATGGAGTATGG 57.213 34.615 0.00 0.00 0.00 2.74
66 67 6.620877 ACTTGACTTTGTATGGAGTATGGA 57.379 37.500 0.00 0.00 0.00 3.41
67 68 6.644347 ACTTGACTTTGTATGGAGTATGGAG 58.356 40.000 0.00 0.00 0.00 3.86
68 69 5.023533 TGACTTTGTATGGAGTATGGAGC 57.976 43.478 0.00 0.00 0.00 4.70
70 71 5.028549 ACTTTGTATGGAGTATGGAGCAG 57.971 43.478 0.00 0.00 0.00 4.24
71 72 4.471386 ACTTTGTATGGAGTATGGAGCAGT 59.529 41.667 0.00 0.00 0.00 4.40
73 74 5.435686 TTGTATGGAGTATGGAGCAGTTT 57.564 39.130 0.00 0.00 0.00 2.66
74 75 5.023533 TGTATGGAGTATGGAGCAGTTTC 57.976 43.478 0.00 0.00 0.00 2.78
75 76 2.672961 TGGAGTATGGAGCAGTTTCG 57.327 50.000 0.00 0.00 0.00 3.46
76 77 2.176045 TGGAGTATGGAGCAGTTTCGA 58.824 47.619 0.00 0.00 0.00 3.71
77 78 2.565391 TGGAGTATGGAGCAGTTTCGAA 59.435 45.455 0.00 0.00 0.00 3.71
78 79 3.007506 TGGAGTATGGAGCAGTTTCGAAA 59.992 43.478 6.47 6.47 0.00 3.46
79 80 3.371285 GGAGTATGGAGCAGTTTCGAAAC 59.629 47.826 29.36 29.36 39.17 2.78
80 81 2.993899 AGTATGGAGCAGTTTCGAAACG 59.006 45.455 29.72 24.83 43.51 3.60
81 82 1.156736 ATGGAGCAGTTTCGAAACGG 58.843 50.000 29.35 29.35 43.51 4.44
98 99 2.699954 ACGGCAGAGTTTGAATAGTGG 58.300 47.619 0.00 0.00 0.00 4.00
99 100 1.398390 CGGCAGAGTTTGAATAGTGGC 59.602 52.381 0.00 0.00 0.00 5.01
115 116 2.281484 GCTGTTGCGTCAGGGGAA 60.281 61.111 9.42 0.00 36.12 3.97
116 117 2.328099 GCTGTTGCGTCAGGGGAAG 61.328 63.158 9.42 0.00 36.12 3.46
149 150 3.174573 GCGCGCGTAACGTAACCT 61.175 61.111 32.35 0.00 46.11 3.50
150 151 2.685119 CGCGCGTAACGTAACCTG 59.315 61.111 24.19 0.00 46.11 4.00
151 152 2.392976 GCGCGTAACGTAACCTGC 59.607 61.111 8.43 0.00 46.11 4.85
152 153 2.090524 GCGCGTAACGTAACCTGCT 61.091 57.895 8.43 0.00 46.11 4.24
153 154 1.700029 CGCGTAACGTAACCTGCTG 59.300 57.895 0.00 0.00 36.87 4.41
154 155 1.005294 CGCGTAACGTAACCTGCTGT 61.005 55.000 0.00 0.00 36.87 4.40
155 156 0.437295 GCGTAACGTAACCTGCTGTG 59.563 55.000 0.00 0.00 0.00 3.66
156 157 1.065358 CGTAACGTAACCTGCTGTGG 58.935 55.000 0.00 0.00 0.00 4.17
157 158 0.794473 GTAACGTAACCTGCTGTGGC 59.206 55.000 0.00 0.00 39.26 5.01
158 159 0.320946 TAACGTAACCTGCTGTGGCC 60.321 55.000 0.00 0.00 37.74 5.36
193 199 4.988716 TGTCCCGTCCCTCTGCGT 62.989 66.667 0.00 0.00 0.00 5.24
242 248 0.917259 CTCGAGACGGCTTCAATTCG 59.083 55.000 6.58 0.00 0.00 3.34
246 252 0.736325 AGACGGCTTCAATTCGGACG 60.736 55.000 0.00 0.00 37.52 4.79
248 254 2.791927 GGCTTCAATTCGGACGGC 59.208 61.111 0.00 0.00 0.00 5.68
252 258 0.657840 CTTCAATTCGGACGGCATCC 59.342 55.000 0.00 0.00 45.20 3.51
264 270 1.529244 GGCATCCATCCTTTCCCCG 60.529 63.158 0.00 0.00 0.00 5.73
265 271 2.196245 GCATCCATCCTTTCCCCGC 61.196 63.158 0.00 0.00 0.00 6.13
266 272 1.893808 CATCCATCCTTTCCCCGCG 60.894 63.158 0.00 0.00 0.00 6.46
267 273 2.375345 ATCCATCCTTTCCCCGCGT 61.375 57.895 4.92 0.00 0.00 6.01
268 274 2.325393 ATCCATCCTTTCCCCGCGTC 62.325 60.000 4.92 0.00 0.00 5.19
269 275 2.513897 CATCCTTTCCCCGCGTCC 60.514 66.667 4.92 0.00 0.00 4.79
270 276 4.157120 ATCCTTTCCCCGCGTCCG 62.157 66.667 4.92 0.00 0.00 4.79
298 304 1.139734 CGTGCGGCACTGATCTACT 59.860 57.895 28.42 0.00 31.34 2.57
299 305 0.380733 CGTGCGGCACTGATCTACTA 59.619 55.000 28.42 0.00 31.34 1.82
300 306 1.598183 CGTGCGGCACTGATCTACTAG 60.598 57.143 28.42 7.19 31.34 2.57
301 307 1.405821 GTGCGGCACTGATCTACTAGT 59.594 52.381 25.08 0.00 0.00 2.57
302 308 2.617308 GTGCGGCACTGATCTACTAGTA 59.383 50.000 25.08 1.89 0.00 1.82
344 350 1.670087 CGGTACCGCTGATCCATGATC 60.670 57.143 23.44 0.00 39.31 2.92
361 370 5.828328 CCATGATCAGTAGTCCTGTACTGTA 59.172 44.000 0.09 0.00 46.84 2.74
363 372 5.191426 TGATCAGTAGTCCTGTACTGTACC 58.809 45.833 14.91 0.12 46.84 3.34
365 374 4.586884 TCAGTAGTCCTGTACTGTACCAG 58.413 47.826 14.91 11.58 46.84 4.00
366 375 4.042560 TCAGTAGTCCTGTACTGTACCAGT 59.957 45.833 14.91 2.09 46.84 4.00
378 387 5.420725 ACTGTACCAGTATCTGCATTTCA 57.579 39.130 0.00 0.00 43.46 2.69
379 388 5.804639 ACTGTACCAGTATCTGCATTTCAA 58.195 37.500 0.00 0.00 43.46 2.69
400 409 5.700832 TCAACTCAAAATGCACCTAGTACAG 59.299 40.000 0.00 0.00 0.00 2.74
419 428 5.596836 ACAGTGGTGTTTTTGTTCATGAT 57.403 34.783 0.00 0.00 30.30 2.45
422 431 7.202526 ACAGTGGTGTTTTTGTTCATGATTAG 58.797 34.615 0.00 0.00 30.30 1.73
423 432 7.147915 ACAGTGGTGTTTTTGTTCATGATTAGT 60.148 33.333 0.00 0.00 30.30 2.24
425 434 7.920682 AGTGGTGTTTTTGTTCATGATTAGTTC 59.079 33.333 0.00 0.00 0.00 3.01
426 435 7.920682 GTGGTGTTTTTGTTCATGATTAGTTCT 59.079 33.333 0.00 0.00 0.00 3.01
427 436 9.126151 TGGTGTTTTTGTTCATGATTAGTTCTA 57.874 29.630 0.00 0.00 0.00 2.10
428 437 9.612620 GGTGTTTTTGTTCATGATTAGTTCTAG 57.387 33.333 0.00 0.00 0.00 2.43
445 454 7.899648 AGTTCTAGTATACTACATGCCAACT 57.100 36.000 8.59 7.38 0.00 3.16
446 455 7.717568 AGTTCTAGTATACTACATGCCAACTG 58.282 38.462 8.59 0.00 0.00 3.16
447 456 6.650427 TCTAGTATACTACATGCCAACTGG 57.350 41.667 8.59 0.00 38.53 4.00
449 458 7.292319 TCTAGTATACTACATGCCAACTGGTA 58.708 38.462 8.59 0.00 37.57 3.25
450 459 6.801718 AGTATACTACATGCCAACTGGTAA 57.198 37.500 2.75 0.00 37.57 2.85
456 1911 6.423182 ACTACATGCCAACTGGTAATAATGT 58.577 36.000 0.00 0.00 37.57 2.71
463 1918 5.167845 CCAACTGGTAATAATGTTGTTGCC 58.832 41.667 0.00 3.12 38.35 4.52
466 1921 7.309499 CCAACTGGTAATAATGTTGTTGCCTAA 60.309 37.037 9.85 0.00 38.35 2.69
467 1922 7.153217 ACTGGTAATAATGTTGTTGCCTAAC 57.847 36.000 9.85 0.00 35.61 2.34
468 1923 6.152154 ACTGGTAATAATGTTGTTGCCTAACC 59.848 38.462 9.85 0.00 35.61 2.85
469 1924 6.010850 TGGTAATAATGTTGTTGCCTAACCA 58.989 36.000 9.85 0.00 35.61 3.67
471 1926 7.033185 GGTAATAATGTTGTTGCCTAACCAAG 58.967 38.462 2.90 0.00 35.92 3.61
473 1928 0.665835 TGTTGTTGCCTAACCAAGCG 59.334 50.000 0.00 0.00 35.92 4.68
487 3743 1.348276 CAAGCGCAGTCTTGAGAGAG 58.652 55.000 11.47 0.00 41.64 3.20
492 3748 3.415237 CAGTCTTGAGAGAGTGCGG 57.585 57.895 0.00 0.00 44.11 5.69
507 3763 2.661537 CGGTGCGCTTGACTGACA 60.662 61.111 9.73 0.00 0.00 3.58
508 3764 2.243957 CGGTGCGCTTGACTGACAA 61.244 57.895 9.73 0.00 36.97 3.18
510 3766 0.040958 GGTGCGCTTGACTGACAAAG 60.041 55.000 9.73 0.00 38.08 2.77
511 3767 0.657840 GTGCGCTTGACTGACAAAGT 59.342 50.000 9.73 0.00 43.85 2.66
522 3778 2.708216 TGACAAAGTCACTGGCAGAA 57.292 45.000 23.66 5.82 37.67 3.02
557 3813 3.622514 CCGGAGAAGAGGGAGTGG 58.377 66.667 0.00 0.00 0.00 4.00
558 3814 1.000486 CCGGAGAAGAGGGAGTGGA 60.000 63.158 0.00 0.00 0.00 4.02
559 3815 0.397816 CCGGAGAAGAGGGAGTGGAT 60.398 60.000 0.00 0.00 0.00 3.41
560 3816 0.749649 CGGAGAAGAGGGAGTGGATG 59.250 60.000 0.00 0.00 0.00 3.51
561 3817 1.686428 CGGAGAAGAGGGAGTGGATGA 60.686 57.143 0.00 0.00 0.00 2.92
563 3819 2.038659 GAGAAGAGGGAGTGGATGAGG 58.961 57.143 0.00 0.00 0.00 3.86
564 3820 1.648568 AGAAGAGGGAGTGGATGAGGA 59.351 52.381 0.00 0.00 0.00 3.71
566 3822 0.264359 AGAGGGAGTGGATGAGGAGG 59.736 60.000 0.00 0.00 0.00 4.30
567 3823 0.263172 GAGGGAGTGGATGAGGAGGA 59.737 60.000 0.00 0.00 0.00 3.71
568 3824 0.948050 AGGGAGTGGATGAGGAGGAT 59.052 55.000 0.00 0.00 0.00 3.24
595 3858 1.084290 CAAGTCGTGTTCGTGTGCG 60.084 57.895 0.00 0.00 38.33 5.34
611 3874 2.661537 CGGACAGACACAAGCGCA 60.662 61.111 11.47 0.00 0.00 6.09
625 3888 3.185365 CGCACGCGCAGATTGGTA 61.185 61.111 5.73 0.00 38.40 3.25
626 3889 2.525248 CGCACGCGCAGATTGGTAT 61.525 57.895 5.73 0.00 38.40 2.73
627 3890 1.212455 CGCACGCGCAGATTGGTATA 61.212 55.000 5.73 0.00 38.40 1.47
628 3891 0.934496 GCACGCGCAGATTGGTATAA 59.066 50.000 5.73 0.00 38.36 0.98
629 3892 1.531149 GCACGCGCAGATTGGTATAAT 59.469 47.619 5.73 0.00 38.36 1.28
630 3893 2.032030 GCACGCGCAGATTGGTATAATT 60.032 45.455 5.73 0.00 38.36 1.40
631 3894 3.544651 CACGCGCAGATTGGTATAATTG 58.455 45.455 5.73 0.00 0.00 2.32
632 3895 3.002246 CACGCGCAGATTGGTATAATTGT 59.998 43.478 5.73 0.00 0.00 2.71
634 3897 4.994852 ACGCGCAGATTGGTATAATTGTAT 59.005 37.500 5.73 0.00 0.00 2.29
635 3898 5.468746 ACGCGCAGATTGGTATAATTGTATT 59.531 36.000 5.73 0.00 0.00 1.89
636 3899 6.647481 ACGCGCAGATTGGTATAATTGTATTA 59.353 34.615 5.73 0.00 0.00 0.98
637 3900 7.333423 ACGCGCAGATTGGTATAATTGTATTAT 59.667 33.333 5.73 0.00 0.00 1.28
638 3901 7.846107 CGCGCAGATTGGTATAATTGTATTATC 59.154 37.037 8.75 0.00 0.00 1.75
639 3902 8.664798 GCGCAGATTGGTATAATTGTATTATCA 58.335 33.333 0.30 0.00 0.00 2.15
653 3916 9.469807 AATTGTATTATCATCTTCTCGACTCAC 57.530 33.333 0.00 0.00 0.00 3.51
654 3917 6.659776 TGTATTATCATCTTCTCGACTCACG 58.340 40.000 0.00 0.00 44.09 4.35
663 3926 2.464189 CGACTCACGAAAACGCGG 59.536 61.111 12.47 0.00 45.77 6.46
664 3927 2.851104 GACTCACGAAAACGCGGG 59.149 61.111 12.47 0.00 35.63 6.13
665 3928 1.662446 GACTCACGAAAACGCGGGA 60.662 57.895 12.47 0.00 42.15 5.14
682 3945 1.682087 GGGAGAAAAGGATCCAACCGG 60.682 57.143 15.82 0.00 37.33 5.28
685 3948 1.004394 AGAAAAGGATCCAACCGGACC 59.996 52.381 15.82 1.27 46.79 4.46
688 3951 4.851179 GGATCCAACCGGACCCGC 62.851 72.222 9.46 0.00 46.79 6.13
689 3952 4.090588 GATCCAACCGGACCCGCA 62.091 66.667 9.46 0.00 46.79 5.69
690 3953 4.404098 ATCCAACCGGACCCGCAC 62.404 66.667 9.46 0.00 46.79 5.34
719 3982 2.239654 TCTCCTCGCAATCCTCCAAAAT 59.760 45.455 0.00 0.00 0.00 1.82
725 3988 3.768757 TCGCAATCCTCCAAAATCCAAAT 59.231 39.130 0.00 0.00 0.00 2.32
731 3994 5.502089 TCCTCCAAAATCCAAATGCAATT 57.498 34.783 0.00 0.00 38.98 2.32
761 4039 2.034685 TCTCCTCGCATGTCTTAATCGG 59.965 50.000 0.00 0.00 0.00 4.18
764 4042 1.524355 CTCGCATGTCTTAATCGGCTG 59.476 52.381 0.00 0.00 0.00 4.85
766 4044 0.947244 GCATGTCTTAATCGGCTGGG 59.053 55.000 0.00 0.00 0.00 4.45
767 4045 1.747206 GCATGTCTTAATCGGCTGGGT 60.747 52.381 0.00 0.00 0.00 4.51
768 4046 2.643551 CATGTCTTAATCGGCTGGGTT 58.356 47.619 0.00 0.00 0.00 4.11
769 4047 2.107950 TGTCTTAATCGGCTGGGTTG 57.892 50.000 0.00 0.00 0.00 3.77
770 4048 1.626321 TGTCTTAATCGGCTGGGTTGA 59.374 47.619 0.00 0.00 0.00 3.18
772 4050 3.279434 GTCTTAATCGGCTGGGTTGATT 58.721 45.455 0.00 0.00 36.40 2.57
774 4052 4.511826 GTCTTAATCGGCTGGGTTGATTAG 59.488 45.833 0.00 0.00 36.33 1.73
775 4053 1.680338 AATCGGCTGGGTTGATTAGC 58.320 50.000 0.00 0.00 36.74 3.09
777 4055 0.326595 TCGGCTGGGTTGATTAGCAA 59.673 50.000 0.00 0.00 39.15 3.91
778 4056 1.064758 TCGGCTGGGTTGATTAGCAAT 60.065 47.619 0.00 0.00 39.03 3.56
781 4066 1.202452 GCTGGGTTGATTAGCAATGGC 60.202 52.381 0.00 0.00 39.03 4.40
784 4069 3.890756 CTGGGTTGATTAGCAATGGCATA 59.109 43.478 0.00 0.00 44.61 3.14
791 4076 3.882102 TTAGCAATGGCATAGTGGGAT 57.118 42.857 0.00 0.00 44.61 3.85
805 4090 4.127566 AGTGGGATGCATATTGTTTTGC 57.872 40.909 0.00 0.00 39.33 3.68
810 4095 6.421801 GTGGGATGCATATTGTTTTGCTAATC 59.578 38.462 0.00 0.00 39.60 1.75
811 4096 6.097981 TGGGATGCATATTGTTTTGCTAATCA 59.902 34.615 0.00 0.00 39.60 2.57
812 4097 6.985645 GGGATGCATATTGTTTTGCTAATCAA 59.014 34.615 0.00 6.81 39.60 2.57
813 4098 7.170320 GGGATGCATATTGTTTTGCTAATCAAG 59.830 37.037 0.00 0.00 39.60 3.02
893 4185 4.933064 CTCCGCCCGCTCGCTAAG 62.933 72.222 0.00 0.00 0.00 2.18
917 4221 1.082954 CCTCCCCTTCTTCTCCCCA 59.917 63.158 0.00 0.00 0.00 4.96
924 4228 1.199615 CTTCTTCTCCCCACTCCTCC 58.800 60.000 0.00 0.00 0.00 4.30
926 4230 0.336737 TCTTCTCCCCACTCCTCCTC 59.663 60.000 0.00 0.00 0.00 3.71
927 4231 1.000486 TTCTCCCCACTCCTCCTCG 60.000 63.158 0.00 0.00 0.00 4.63
928 4232 3.151022 CTCCCCACTCCTCCTCGC 61.151 72.222 0.00 0.00 0.00 5.03
929 4233 4.779733 TCCCCACTCCTCCTCGCC 62.780 72.222 0.00 0.00 0.00 5.54
933 4237 4.154347 CACTCCTCCTCGCCCAGC 62.154 72.222 0.00 0.00 0.00 4.85
938 4242 4.785453 CTCCTCGCCCAGCCCAAC 62.785 72.222 0.00 0.00 0.00 3.77
956 4260 4.671590 CGGGACCCCCAACCAACC 62.672 72.222 4.46 0.00 45.83 3.77
957 4261 4.310600 GGGACCCCCAACCAACCC 62.311 72.222 0.00 0.00 44.65 4.11
1055 4359 1.751927 AGGTCCGTTCGCCGTCTAT 60.752 57.895 0.00 0.00 33.66 1.98
1120 4659 3.921767 CTTCTCGTGCTGCTCGCCA 62.922 63.158 18.22 5.15 38.05 5.69
1125 4664 3.058160 GTGCTGCTCGCCATGGTT 61.058 61.111 14.67 0.00 38.05 3.67
1156 4702 2.741055 GCTTCCTCCCTGCTCCTCC 61.741 68.421 0.00 0.00 0.00 4.30
1181 4741 1.304134 GGGAACGATTGGGTGCCTT 60.304 57.895 0.00 0.00 35.76 4.35
1182 4742 1.595093 GGGAACGATTGGGTGCCTTG 61.595 60.000 0.00 0.00 35.76 3.61
1186 4746 2.703798 CGATTGGGTGCCTTGGCTG 61.704 63.158 13.18 0.00 0.00 4.85
1225 4785 4.347453 GTTTGCAGGGCACTGGCG 62.347 66.667 19.71 0.00 45.04 5.69
1319 4879 1.217244 GTTCGTGGGTAGCCATCGT 59.783 57.895 24.80 0.00 0.00 3.73
1344 4904 3.930012 CCGCTGCTAGCCCTACCC 61.930 72.222 13.29 0.00 38.18 3.69
1345 4905 2.840102 CGCTGCTAGCCCTACCCT 60.840 66.667 13.29 0.00 38.18 4.34
1347 4907 2.862223 GCTGCTAGCCCTACCCTCG 61.862 68.421 13.29 0.00 34.48 4.63
1348 4908 1.455959 CTGCTAGCCCTACCCTCGT 60.456 63.158 13.29 0.00 0.00 4.18
1349 4909 1.739338 CTGCTAGCCCTACCCTCGTG 61.739 65.000 13.29 0.00 0.00 4.35
1350 4910 1.455217 GCTAGCCCTACCCTCGTGA 60.455 63.158 2.29 0.00 0.00 4.35
1351 4911 1.457009 GCTAGCCCTACCCTCGTGAG 61.457 65.000 2.29 0.00 0.00 3.51
1352 4912 0.183014 CTAGCCCTACCCTCGTGAGA 59.817 60.000 0.00 0.00 39.12 3.27
1353 4913 0.851469 TAGCCCTACCCTCGTGAGAT 59.149 55.000 0.00 0.00 40.84 2.75
1354 4914 0.032017 AGCCCTACCCTCGTGAGATT 60.032 55.000 0.00 0.00 40.84 2.40
1355 4915 0.389757 GCCCTACCCTCGTGAGATTC 59.610 60.000 0.00 0.00 40.84 2.52
1356 4916 1.041437 CCCTACCCTCGTGAGATTCC 58.959 60.000 0.00 0.00 40.84 3.01
1357 4917 1.411787 CCCTACCCTCGTGAGATTCCT 60.412 57.143 0.00 0.00 40.84 3.36
1358 4918 2.389715 CCTACCCTCGTGAGATTCCTT 58.610 52.381 0.00 0.00 40.84 3.36
1359 4919 2.362717 CCTACCCTCGTGAGATTCCTTC 59.637 54.545 0.00 0.00 40.84 3.46
1360 4920 0.818296 ACCCTCGTGAGATTCCTTCG 59.182 55.000 0.00 0.00 40.84 3.79
1361 4921 0.818296 CCCTCGTGAGATTCCTTCGT 59.182 55.000 0.00 0.00 40.84 3.85
1362 4922 1.202313 CCCTCGTGAGATTCCTTCGTC 60.202 57.143 0.00 0.00 40.84 4.20
1363 4923 1.532090 CCTCGTGAGATTCCTTCGTCG 60.532 57.143 0.00 0.00 40.84 5.12
1364 4924 0.179171 TCGTGAGATTCCTTCGTCGC 60.179 55.000 0.00 0.00 33.31 5.19
1365 4925 1.464429 CGTGAGATTCCTTCGTCGCG 61.464 60.000 0.00 0.00 36.69 5.87
1366 4926 1.516386 TGAGATTCCTTCGTCGCGC 60.516 57.895 0.00 0.00 0.00 6.86
1367 4927 1.516386 GAGATTCCTTCGTCGCGCA 60.516 57.895 8.75 0.00 0.00 6.09
1387 4947 4.619394 CGCAGTTCTGTATCCTTCTTGAGT 60.619 45.833 1.78 0.00 0.00 3.41
1392 4952 4.569943 TCTGTATCCTTCTTGAGTTGTGC 58.430 43.478 0.00 0.00 0.00 4.57
1397 4961 1.528129 CTTCTTGAGTTGTGCCCTCC 58.472 55.000 0.00 0.00 0.00 4.30
1398 4962 0.843309 TTCTTGAGTTGTGCCCTCCA 59.157 50.000 0.00 0.00 0.00 3.86
1402 4966 3.266772 TCTTGAGTTGTGCCCTCCATAAT 59.733 43.478 0.00 0.00 0.00 1.28
1413 4977 3.372025 GCCCTCCATAATGACCAGTTCTT 60.372 47.826 0.00 0.00 0.00 2.52
1414 4978 4.202441 CCCTCCATAATGACCAGTTCTTG 58.798 47.826 0.00 0.00 0.00 3.02
1468 5032 1.367312 CGCTGAATTCGATGCGCTG 60.367 57.895 20.99 0.00 41.85 5.18
1494 5058 2.069273 CGACAGGTCCACATTTGACTC 58.931 52.381 0.00 0.00 33.22 3.36
1509 5077 3.764466 CTCTTCCCCTGCGTCGCT 61.764 66.667 19.50 0.00 0.00 4.93
1518 5086 4.778415 TGCGTCGCTCGGCTTCTC 62.778 66.667 19.50 0.00 40.26 2.87
1603 5182 0.594796 AAAAGTTGCCGCTTTCGCTG 60.595 50.000 3.56 0.00 37.68 5.18
1609 5188 2.048222 CCGCTTTCGCTGTCCTCA 60.048 61.111 0.00 0.00 0.00 3.86
1622 5201 2.187946 CCTCACCCAGTCGATGCC 59.812 66.667 0.00 0.00 0.00 4.40
1639 5218 1.895966 CCACTGCTCTGCTCTGCTA 59.104 57.895 0.00 0.00 0.00 3.49
1648 5227 2.602211 CTCTGCTCTGCTATGTTTCGTG 59.398 50.000 0.00 0.00 0.00 4.35
1702 5293 3.056328 GCTTTCACCGGGTGCCTC 61.056 66.667 22.42 7.44 32.98 4.70
1728 5319 4.524318 CGGGATTGGGACGGGTCG 62.524 72.222 0.00 0.00 0.00 4.79
1729 5320 4.171103 GGGATTGGGACGGGTCGG 62.171 72.222 0.00 0.00 0.00 4.79
1731 5322 3.396570 GATTGGGACGGGTCGGGT 61.397 66.667 0.00 0.00 0.00 5.28
1732 5323 3.675619 GATTGGGACGGGTCGGGTG 62.676 68.421 0.00 0.00 0.00 4.61
1768 5360 6.318900 ACGATTTTCTAAAAAGCTGGGGATAG 59.681 38.462 0.00 0.00 0.00 2.08
1776 5368 2.808906 AGCTGGGGATAGTTTTGTCC 57.191 50.000 0.00 0.00 34.04 4.02
1777 5369 1.992557 AGCTGGGGATAGTTTTGTCCA 59.007 47.619 0.00 0.00 36.37 4.02
1786 5380 2.951229 AGTTTTGTCCATTCTCCCGT 57.049 45.000 0.00 0.00 0.00 5.28
1902 5497 3.674528 TCCTCTGCTCTTTCTGTCTTG 57.325 47.619 0.00 0.00 0.00 3.02
1927 5522 2.278857 CAGTCGGGCGGATTCTCG 60.279 66.667 0.00 0.00 0.00 4.04
1960 5555 2.964389 GCGATGCTTCTCGGGCTC 60.964 66.667 6.15 0.00 39.05 4.70
2050 5645 3.055385 GGAGTAAGTCCAACTGCCATACA 60.055 47.826 0.00 0.00 46.10 2.29
2055 5650 4.142609 AGTCCAACTGCCATACATACAG 57.857 45.455 0.00 0.00 37.45 2.74
2066 5661 7.030075 TGCCATACATACAGTTCATCAAATG 57.970 36.000 0.00 0.00 33.64 2.32
2067 5662 5.916883 GCCATACATACAGTTCATCAAATGC 59.083 40.000 0.00 0.00 30.32 3.56
2096 5694 8.635328 TCATCTACAGTTTACTGAACACTAACA 58.365 33.333 16.31 0.00 46.59 2.41
2101 5699 8.331730 ACAGTTTACTGAACACTAACACTTTT 57.668 30.769 16.31 0.00 46.59 2.27
2252 5853 1.017701 CGACAACGGTTAAGAGGGCC 61.018 60.000 0.00 0.00 35.72 5.80
2365 5966 1.076533 CGTACTGGCCGTGTGATGAC 61.077 60.000 10.96 1.32 0.00 3.06
2509 6110 6.554334 TTCAGTTGGTAAGTGATAACTTGC 57.446 37.500 5.64 3.99 40.34 4.01
2527 6128 4.883006 ACTTGCCATGCTTTTGATGTTTTT 59.117 33.333 0.00 0.00 0.00 1.94
2530 6131 6.483385 TGCCATGCTTTTGATGTTTTTATG 57.517 33.333 0.00 0.00 0.00 1.90
2537 6138 8.351495 TGCTTTTGATGTTTTTATGTTGTCTC 57.649 30.769 0.00 0.00 0.00 3.36
2554 6155 8.229253 TGTTGTCTCACTCTGTTTTACTACTA 57.771 34.615 0.00 0.00 0.00 1.82
2555 6156 8.133627 TGTTGTCTCACTCTGTTTTACTACTAC 58.866 37.037 0.00 0.00 0.00 2.73
2556 6157 8.351461 GTTGTCTCACTCTGTTTTACTACTACT 58.649 37.037 0.00 0.00 0.00 2.57
2604 6209 2.611224 GCTGAAAAATGCTTCTGTGGGG 60.611 50.000 0.00 0.00 0.00 4.96
2605 6210 1.969923 TGAAAAATGCTTCTGTGGGGG 59.030 47.619 0.00 0.00 0.00 5.40
2643 6248 4.696877 TCTTTGCTTCATGTGTCTGGTATG 59.303 41.667 0.00 0.00 0.00 2.39
2668 6273 6.483640 GTCCTAAGATGTGTGTCTGAACTTTT 59.516 38.462 0.00 0.00 0.00 2.27
2814 6419 8.706936 CAAGTAGAGCATAACATCATGATACAC 58.293 37.037 8.15 0.00 0.00 2.90
2837 6442 3.680786 GGTGGTGCGAAAAGGCCC 61.681 66.667 0.00 0.00 0.00 5.80
2839 6444 4.257654 TGGTGCGAAAAGGCCCGA 62.258 61.111 0.00 0.00 0.00 5.14
2848 6453 0.984230 AAAAGGCCCGACTCTGATGA 59.016 50.000 0.00 0.00 0.00 2.92
2880 6485 4.844884 AGTAGGCCTGATGTTTCCTTTAC 58.155 43.478 17.99 0.00 0.00 2.01
3263 6870 2.073816 CGGAGCGTAGAATTTGGTGTT 58.926 47.619 0.00 0.00 0.00 3.32
3401 7008 2.107366 AGCAAGGAAGAGAGAGCTACC 58.893 52.381 0.00 0.00 0.00 3.18
3546 7163 2.357075 TCTGCTATCGGATACTAGCGG 58.643 52.381 12.02 12.02 44.96 5.52
3574 7191 9.466497 ACTGTAATGTAACAATCCTCAAATCAT 57.534 29.630 0.00 0.00 0.00 2.45
3581 7198 9.513906 TGTAACAATCCTCAAATCATTACTGAA 57.486 29.630 0.00 0.00 34.37 3.02
3610 7227 3.959293 TGCATTGATGACATTCTGGTCT 58.041 40.909 0.00 0.00 38.61 3.85
3611 7228 3.943381 TGCATTGATGACATTCTGGTCTC 59.057 43.478 0.00 0.00 38.61 3.36
3634 7251 7.646526 TCTCGTCATTTGGTAGAAATATACACG 59.353 37.037 0.00 0.00 0.00 4.49
3648 7265 5.973651 ATATACACGTGTGCAAAGAGATG 57.026 39.130 30.83 0.00 0.00 2.90
3679 7296 4.160814 TCTTGATTGGCCCATTTGAAGATG 59.839 41.667 0.00 0.00 0.00 2.90
3714 7331 6.304922 GTGAATATGATCTTGATTGCGCATTC 59.695 38.462 22.15 22.15 0.00 2.67
3715 7332 6.206048 TGAATATGATCTTGATTGCGCATTCT 59.794 34.615 27.05 11.63 0.00 2.40
3719 7336 0.028505 CTTGATTGCGCATTCTCCCG 59.971 55.000 27.05 12.67 0.00 5.14
3909 7526 4.024893 CGATTGCGCTTGGAGTATAAATGT 60.025 41.667 9.73 0.00 0.00 2.71
3920 7537 9.319143 CTTGGAGTATAAATGTAAGGAGTGAAG 57.681 37.037 0.00 0.00 0.00 3.02
3921 7538 8.375493 TGGAGTATAAATGTAAGGAGTGAAGT 57.625 34.615 0.00 0.00 0.00 3.01
3925 7542 9.654663 AGTATAAATGTAAGGAGTGAAGTGAAC 57.345 33.333 0.00 0.00 0.00 3.18
3963 7580 9.255304 GATCTGATACCACTGAAACTTCTAATC 57.745 37.037 0.00 0.00 0.00 1.75
3975 7592 7.164122 TGAAACTTCTAATCTGAAGCACATCT 58.836 34.615 4.41 0.00 45.20 2.90
3978 7595 6.705302 ACTTCTAATCTGAAGCACATCTTGA 58.295 36.000 4.41 0.00 45.20 3.02
4032 7657 0.806868 GCAGCATAAGAAGCACAGCA 59.193 50.000 0.00 0.00 0.00 4.41
4041 7666 6.404074 GCATAAGAAGCACAGCATAGTTTCTT 60.404 38.462 14.74 14.74 44.10 2.52
4079 7704 7.674471 AAACTGCTTAGTTCCTCTGAATTAC 57.326 36.000 0.00 0.00 31.98 1.89
4093 7719 8.383175 TCCTCTGAATTACCATATAAACCATCC 58.617 37.037 0.00 0.00 0.00 3.51
4137 7821 3.482156 AGCTGAGAGAAAAGTCAAGCA 57.518 42.857 0.00 0.00 33.16 3.91
4168 7852 5.413499 TCTAACGAAATAACTTTCCTCCGG 58.587 41.667 0.00 0.00 37.99 5.14
4220 7904 3.782244 GAGCACGACAGGCTTGCG 61.782 66.667 0.00 10.21 45.59 4.85
4221 7905 4.299547 AGCACGACAGGCTTGCGA 62.300 61.111 16.78 0.00 45.59 5.10
4232 7916 2.359107 CTTGCGAGGAAGCTGGCA 60.359 61.111 0.00 0.00 36.32 4.92
4358 8042 3.471680 GCACATACCTTCCTCAATCTCC 58.528 50.000 0.00 0.00 0.00 3.71
4386 8076 3.503748 GTGCTGGTGCCTATGATAAATCC 59.496 47.826 0.00 0.00 38.71 3.01
4511 8215 1.207089 TCGTCCTCTCGAATTTGCCAT 59.793 47.619 0.00 0.00 36.89 4.40
4530 8246 5.300792 TGCCATATCGGATAATATCTGCGTA 59.699 40.000 4.24 1.38 36.56 4.42
4565 8281 1.982913 CGCGAATTAAAACCTTGCCAC 59.017 47.619 0.00 0.00 0.00 5.01
4571 8287 0.179051 TAAAACCTTGCCACGACCGT 60.179 50.000 0.00 0.00 0.00 4.83
4687 8417 9.612066 TGCATATAAAAAGGAAAATGAAATCCC 57.388 29.630 0.00 0.00 36.31 3.85
4696 8426 7.441903 AGGAAAATGAAATCCCTTGCATAAT 57.558 32.000 0.00 0.00 36.31 1.28
4697 8427 7.277396 AGGAAAATGAAATCCCTTGCATAATG 58.723 34.615 0.00 0.00 36.31 1.90
4717 8456 9.730420 CATAATGGTAAAAATTGTACTACCAGC 57.270 33.333 13.11 0.00 45.22 4.85
4720 8459 5.179742 TGGTAAAAATTGTACTACCAGCACG 59.820 40.000 5.55 0.00 39.06 5.34
4727 8466 4.524316 TGTACTACCAGCACGTTAATGT 57.476 40.909 0.00 0.00 0.00 2.71
4772 8513 4.697352 CCATTAATTTCCTAGGCGGATCTG 59.303 45.833 2.96 0.00 42.70 2.90
4793 8540 8.814038 ATCTGGATAATAATGGTGGAATTAGC 57.186 34.615 0.00 0.00 0.00 3.09
4823 8579 4.617520 ATGCCACGTGCGTCCACA 62.618 61.111 10.91 1.08 45.60 4.17
4846 8602 4.889856 CGTGCGATGCCGGATCCA 62.890 66.667 13.41 0.00 38.66 3.41
4860 8616 1.153168 ATCCAACGGCTGGGAATCG 60.153 57.895 6.02 0.00 46.44 3.34
4902 8667 3.953712 ATCCAAAAACATTCCCGTTCC 57.046 42.857 0.00 0.00 0.00 3.62
4906 8671 1.858372 AAAACATTCCCGTTCCGGCG 61.858 55.000 0.00 0.00 46.86 6.46
4909 8674 4.807039 ATTCCCGTTCCGGCGTCG 62.807 66.667 0.29 0.29 46.86 5.12
4915 8680 4.651008 GTTCCGGCGTCGTCCACA 62.651 66.667 9.28 0.00 33.95 4.17
4916 8681 4.651008 TTCCGGCGTCGTCCACAC 62.651 66.667 9.28 0.00 33.95 3.82
4924 8689 3.608662 TCGTCCACACGGGGTGTC 61.609 66.667 9.90 1.37 43.92 3.67
4925 8690 4.675029 CGTCCACACGGGGTGTCC 62.675 72.222 9.90 0.00 43.92 4.02
4928 8693 3.238497 CCACACGGGGTGTCCTGA 61.238 66.667 9.90 0.00 43.92 3.86
4929 8694 2.592993 CCACACGGGGTGTCCTGAT 61.593 63.158 9.90 0.00 43.92 2.90
4930 8695 1.079127 CACACGGGGTGTCCTGATC 60.079 63.158 1.21 0.00 43.92 2.92
4932 8697 3.075005 ACGGGGTGTCCTGATCCG 61.075 66.667 0.00 0.00 42.08 4.18
4933 8698 2.758327 CGGGGTGTCCTGATCCGA 60.758 66.667 0.00 0.00 42.94 4.55
4934 8699 2.134287 CGGGGTGTCCTGATCCGAT 61.134 63.158 0.00 0.00 42.94 4.18
4935 8700 1.749033 GGGGTGTCCTGATCCGATC 59.251 63.158 1.01 1.01 0.00 3.69
4936 8701 1.749033 GGGTGTCCTGATCCGATCC 59.251 63.158 5.91 0.00 0.00 3.36
4937 8702 1.048724 GGGTGTCCTGATCCGATCCA 61.049 60.000 5.91 0.00 0.00 3.41
4955 8720 6.017934 CCGATCCAAAGTGTCCTGTATAAATG 60.018 42.308 0.00 0.00 0.00 2.32
4994 8769 0.373370 CTCGCTGACTCTGTCTCTCG 59.627 60.000 0.00 1.22 33.15 4.04
4996 8771 1.138671 GCTGACTCTGTCTCTCGCC 59.861 63.158 0.00 0.00 33.15 5.54
4997 8772 1.590610 GCTGACTCTGTCTCTCGCCA 61.591 60.000 0.00 0.00 33.15 5.69
5001 8786 0.678366 ACTCTGTCTCTCGCCACGAT 60.678 55.000 0.00 0.00 34.61 3.73
5022 8807 0.162294 CAAACCCTAACGCGAACGAC 59.838 55.000 15.93 0.00 43.93 4.34
5326 9119 2.123077 CTGATCCTCCGCCCTCCT 60.123 66.667 0.00 0.00 0.00 3.69
5327 9120 2.123251 TGATCCTCCGCCCTCCTC 60.123 66.667 0.00 0.00 0.00 3.71
5328 9121 2.920384 GATCCTCCGCCCTCCTCC 60.920 72.222 0.00 0.00 0.00 4.30
5329 9122 4.924187 ATCCTCCGCCCTCCTCCG 62.924 72.222 0.00 0.00 0.00 4.63
5351 9144 3.957535 GGGCGATCGCTTGGCATG 61.958 66.667 36.25 0.00 41.60 4.06
5352 9145 4.619140 GGCGATCGCTTGGCATGC 62.619 66.667 36.25 15.82 41.60 4.06
5353 9146 4.619140 GCGATCGCTTGGCATGCC 62.619 66.667 31.94 30.54 38.26 4.40
5354 9147 4.303603 CGATCGCTTGGCATGCCG 62.304 66.667 30.87 19.06 39.42 5.69
5355 9148 3.957535 GATCGCTTGGCATGCCGG 61.958 66.667 30.87 25.31 39.42 6.13
5376 9169 4.183686 GCGCATGCATCTTGCCGT 62.184 61.111 19.57 0.00 44.23 5.68
5377 9170 2.023741 CGCATGCATCTTGCCGTC 59.976 61.111 19.57 0.00 44.23 4.79
5378 9171 2.466982 CGCATGCATCTTGCCGTCT 61.467 57.895 19.57 0.00 44.23 4.18
5379 9172 1.354506 GCATGCATCTTGCCGTCTC 59.645 57.895 14.21 0.00 44.23 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.928077 ACTCCACTGGCTACCCTACTA 59.072 52.381 0.00 0.00 0.00 1.82
1 2 0.711184 ACTCCACTGGCTACCCTACT 59.289 55.000 0.00 0.00 0.00 2.57
2 3 1.112950 GACTCCACTGGCTACCCTAC 58.887 60.000 0.00 0.00 0.00 3.18
3 4 1.008403 AGACTCCACTGGCTACCCTA 58.992 55.000 0.00 0.00 0.00 3.53
4 5 0.616111 CAGACTCCACTGGCTACCCT 60.616 60.000 0.00 0.00 34.64 4.34
5 6 0.614979 TCAGACTCCACTGGCTACCC 60.615 60.000 0.00 0.00 38.31 3.69
6 7 0.533032 GTCAGACTCCACTGGCTACC 59.467 60.000 0.00 0.00 39.14 3.18
9 10 4.963944 AGTCAGACTCCACTGGCT 57.036 55.556 0.00 0.00 46.15 4.75
10 11 1.070758 TGAAAGTCAGACTCCACTGGC 59.929 52.381 2.72 0.00 42.05 4.85
11 12 2.548920 GGTGAAAGTCAGACTCCACTGG 60.549 54.545 24.12 0.00 38.31 4.00
12 13 2.366916 AGGTGAAAGTCAGACTCCACTG 59.633 50.000 24.12 0.00 39.02 3.66
13 14 2.683768 AGGTGAAAGTCAGACTCCACT 58.316 47.619 24.12 14.02 0.00 4.00
14 15 3.070302 AGAAGGTGAAAGTCAGACTCCAC 59.930 47.826 20.08 20.08 0.00 4.02
15 16 3.309296 AGAAGGTGAAAGTCAGACTCCA 58.691 45.455 2.72 2.52 0.00 3.86
16 17 4.061596 CAAGAAGGTGAAAGTCAGACTCC 58.938 47.826 2.72 0.32 0.00 3.85
17 18 4.698575 ACAAGAAGGTGAAAGTCAGACTC 58.301 43.478 2.72 0.00 0.00 3.36
18 19 4.762289 ACAAGAAGGTGAAAGTCAGACT 57.238 40.909 0.00 0.00 0.00 3.24
19 20 5.819825 AAACAAGAAGGTGAAAGTCAGAC 57.180 39.130 0.00 0.00 0.00 3.51
35 36 8.621286 ACTCCATACAAAGTCAAGTTAAACAAG 58.379 33.333 0.00 0.00 0.00 3.16
45 46 5.045942 TGCTCCATACTCCATACAAAGTCAA 60.046 40.000 0.00 0.00 0.00 3.18
53 54 4.051922 CGAAACTGCTCCATACTCCATAC 58.948 47.826 0.00 0.00 0.00 2.39
54 55 3.958147 TCGAAACTGCTCCATACTCCATA 59.042 43.478 0.00 0.00 0.00 2.74
56 57 2.176045 TCGAAACTGCTCCATACTCCA 58.824 47.619 0.00 0.00 0.00 3.86
60 61 2.093783 CCGTTTCGAAACTGCTCCATAC 59.906 50.000 31.88 9.00 36.77 2.39
61 62 2.343101 CCGTTTCGAAACTGCTCCATA 58.657 47.619 31.88 0.00 36.77 2.74
62 63 1.156736 CCGTTTCGAAACTGCTCCAT 58.843 50.000 31.88 0.00 36.77 3.41
63 64 1.503818 GCCGTTTCGAAACTGCTCCA 61.504 55.000 35.52 4.15 43.13 3.86
64 65 1.206831 GCCGTTTCGAAACTGCTCC 59.793 57.895 35.52 17.38 43.13 4.70
65 66 0.110644 CTGCCGTTTCGAAACTGCTC 60.111 55.000 38.86 24.81 45.55 4.26
66 67 0.531974 TCTGCCGTTTCGAAACTGCT 60.532 50.000 38.86 0.00 45.55 4.24
67 68 0.110644 CTCTGCCGTTTCGAAACTGC 60.111 55.000 35.92 35.92 45.55 4.40
68 69 1.217882 ACTCTGCCGTTTCGAAACTG 58.782 50.000 31.88 27.62 36.77 3.16
70 71 2.031191 TCAAACTCTGCCGTTTCGAAAC 59.969 45.455 27.37 27.37 35.06 2.78
71 72 2.281517 TCAAACTCTGCCGTTTCGAAA 58.718 42.857 6.47 6.47 35.06 3.46
73 74 1.942677 TTCAAACTCTGCCGTTTCGA 58.057 45.000 0.00 0.00 35.06 3.71
74 75 2.969443 ATTCAAACTCTGCCGTTTCG 57.031 45.000 0.00 0.00 35.06 3.46
75 76 4.378459 CCACTATTCAAACTCTGCCGTTTC 60.378 45.833 0.00 0.00 35.06 2.78
76 77 3.502211 CCACTATTCAAACTCTGCCGTTT 59.498 43.478 0.00 0.00 37.58 3.60
77 78 3.074412 CCACTATTCAAACTCTGCCGTT 58.926 45.455 0.00 0.00 0.00 4.44
78 79 2.699954 CCACTATTCAAACTCTGCCGT 58.300 47.619 0.00 0.00 0.00 5.68
79 80 1.398390 GCCACTATTCAAACTCTGCCG 59.602 52.381 0.00 0.00 0.00 5.69
80 81 2.421424 CAGCCACTATTCAAACTCTGCC 59.579 50.000 0.00 0.00 0.00 4.85
81 82 3.077359 ACAGCCACTATTCAAACTCTGC 58.923 45.455 0.00 0.00 0.00 4.26
82 83 4.614535 GCAACAGCCACTATTCAAACTCTG 60.615 45.833 0.00 0.00 0.00 3.35
83 84 3.503748 GCAACAGCCACTATTCAAACTCT 59.496 43.478 0.00 0.00 0.00 3.24
98 99 2.281484 TTCCCCTGACGCAACAGC 60.281 61.111 2.14 0.00 36.67 4.40
99 100 1.672356 CCTTCCCCTGACGCAACAG 60.672 63.158 0.00 0.00 37.61 3.16
115 116 3.073735 CCGCAGTCTGCTCTCCCT 61.074 66.667 22.13 0.00 42.25 4.20
116 117 4.828925 GCCGCAGTCTGCTCTCCC 62.829 72.222 22.13 2.77 42.25 4.30
136 137 0.437295 CACAGCAGGTTACGTTACGC 59.563 55.000 4.09 0.00 0.00 4.42
176 177 2.849096 ATACGCAGAGGGACGGGACA 62.849 60.000 0.00 0.00 0.00 4.02
246 252 1.529244 CGGGGAAAGGATGGATGCC 60.529 63.158 0.00 0.00 0.00 4.40
248 254 1.893808 CGCGGGGAAAGGATGGATG 60.894 63.158 0.00 0.00 0.00 3.51
252 258 2.513897 GGACGCGGGGAAAGGATG 60.514 66.667 12.47 0.00 0.00 3.51
298 304 8.137437 GGCTCACGTTATAAATGGTACTTACTA 58.863 37.037 0.00 0.00 0.00 1.82
299 305 6.982724 GGCTCACGTTATAAATGGTACTTACT 59.017 38.462 0.00 0.00 0.00 2.24
300 306 6.074676 CGGCTCACGTTATAAATGGTACTTAC 60.075 42.308 0.00 0.00 37.93 2.34
301 307 5.978919 CGGCTCACGTTATAAATGGTACTTA 59.021 40.000 0.00 0.00 37.93 2.24
302 308 4.807304 CGGCTCACGTTATAAATGGTACTT 59.193 41.667 0.00 0.00 37.93 2.24
361 370 4.910195 TGAGTTGAAATGCAGATACTGGT 58.090 39.130 0.00 0.00 31.21 4.00
363 372 8.169839 CATTTTGAGTTGAAATGCAGATACTG 57.830 34.615 0.00 0.00 37.58 2.74
378 387 5.470098 CACTGTACTAGGTGCATTTTGAGTT 59.530 40.000 0.00 0.00 0.00 3.01
379 388 4.997395 CACTGTACTAGGTGCATTTTGAGT 59.003 41.667 0.00 0.00 0.00 3.41
390 399 5.106876 ACAAAAACACCACTGTACTAGGT 57.893 39.130 0.00 0.00 35.65 3.08
391 400 5.587043 TGAACAAAAACACCACTGTACTAGG 59.413 40.000 0.00 0.00 0.00 3.02
392 401 6.671614 TGAACAAAAACACCACTGTACTAG 57.328 37.500 0.00 0.00 0.00 2.57
393 402 6.824196 TCATGAACAAAAACACCACTGTACTA 59.176 34.615 0.00 0.00 0.00 1.82
400 409 7.920682 AGAACTAATCATGAACAAAAACACCAC 59.079 33.333 0.00 0.00 0.00 4.16
419 428 9.417561 AGTTGGCATGTAGTATACTAGAACTAA 57.582 33.333 12.99 9.72 43.54 2.24
422 431 6.924060 CCAGTTGGCATGTAGTATACTAGAAC 59.076 42.308 12.99 8.52 43.54 3.01
423 432 6.610020 ACCAGTTGGCATGTAGTATACTAGAA 59.390 38.462 12.99 5.37 39.91 2.10
425 434 6.406692 ACCAGTTGGCATGTAGTATACTAG 57.593 41.667 12.99 3.30 39.91 2.57
426 435 7.901283 TTACCAGTTGGCATGTAGTATACTA 57.099 36.000 8.59 8.59 39.91 1.82
427 436 6.801718 TTACCAGTTGGCATGTAGTATACT 57.198 37.500 10.87 10.87 39.91 2.12
428 437 9.720769 ATTATTACCAGTTGGCATGTAGTATAC 57.279 33.333 0.00 0.00 39.73 1.47
429 438 9.719355 CATTATTACCAGTTGGCATGTAGTATA 57.281 33.333 0.00 0.00 39.32 1.47
430 439 8.217799 ACATTATTACCAGTTGGCATGTAGTAT 58.782 33.333 0.00 0.00 39.32 2.12
434 443 6.661377 ACAACATTATTACCAGTTGGCATGTA 59.339 34.615 8.72 0.00 44.10 2.29
435 444 5.480073 ACAACATTATTACCAGTTGGCATGT 59.520 36.000 8.72 0.00 44.10 3.21
436 445 5.964758 ACAACATTATTACCAGTTGGCATG 58.035 37.500 8.72 0.00 44.10 4.06
437 446 6.397272 CAACAACATTATTACCAGTTGGCAT 58.603 36.000 8.72 0.00 44.10 4.40
439 448 4.625311 GCAACAACATTATTACCAGTTGGC 59.375 41.667 8.72 0.61 44.10 4.52
440 449 5.047377 AGGCAACAACATTATTACCAGTTGG 60.047 40.000 8.72 0.00 44.10 3.77
441 450 6.024552 AGGCAACAACATTATTACCAGTTG 57.975 37.500 0.00 0.00 45.02 3.16
443 452 6.152154 GGTTAGGCAACAACATTATTACCAGT 59.848 38.462 0.00 0.00 36.29 4.00
445 454 6.010850 TGGTTAGGCAACAACATTATTACCA 58.989 36.000 0.00 0.00 36.29 3.25
446 455 6.518208 TGGTTAGGCAACAACATTATTACC 57.482 37.500 0.00 0.00 36.29 2.85
447 456 6.530181 GCTTGGTTAGGCAACAACATTATTAC 59.470 38.462 0.00 0.00 36.29 1.89
449 458 5.478407 GCTTGGTTAGGCAACAACATTATT 58.522 37.500 0.00 0.00 36.29 1.40
450 459 4.380444 CGCTTGGTTAGGCAACAACATTAT 60.380 41.667 0.00 0.00 36.29 1.28
456 1911 1.103987 TGCGCTTGGTTAGGCAACAA 61.104 50.000 9.73 0.00 36.29 2.83
463 1918 1.728971 CTCAAGACTGCGCTTGGTTAG 59.271 52.381 9.73 0.00 44.14 2.34
466 1921 0.320247 CTCTCAAGACTGCGCTTGGT 60.320 55.000 9.73 4.80 44.14 3.67
467 1922 0.037882 TCTCTCAAGACTGCGCTTGG 60.038 55.000 9.73 1.02 44.14 3.61
468 1923 1.336702 ACTCTCTCAAGACTGCGCTTG 60.337 52.381 9.73 4.65 45.10 4.01
469 1924 0.965439 ACTCTCTCAAGACTGCGCTT 59.035 50.000 9.73 0.00 0.00 4.68
471 1926 1.350706 GCACTCTCTCAAGACTGCGC 61.351 60.000 0.00 0.00 33.54 6.09
473 1928 0.735632 CCGCACTCTCTCAAGACTGC 60.736 60.000 0.00 0.00 37.74 4.40
490 3746 1.771073 TTTGTCAGTCAAGCGCACCG 61.771 55.000 11.47 0.00 37.35 4.94
492 3748 0.657840 ACTTTGTCAGTCAAGCGCAC 59.342 50.000 11.47 0.00 37.35 5.34
503 3759 2.288666 GTTCTGCCAGTGACTTTGTCA 58.711 47.619 0.00 0.00 40.50 3.58
504 3760 2.288666 TGTTCTGCCAGTGACTTTGTC 58.711 47.619 0.00 0.00 0.00 3.18
506 3762 3.119531 TGTTTGTTCTGCCAGTGACTTTG 60.120 43.478 0.00 0.00 0.00 2.77
507 3763 3.088532 TGTTTGTTCTGCCAGTGACTTT 58.911 40.909 0.00 0.00 0.00 2.66
508 3764 2.722094 TGTTTGTTCTGCCAGTGACTT 58.278 42.857 0.00 0.00 0.00 3.01
510 3766 3.502191 TTTGTTTGTTCTGCCAGTGAC 57.498 42.857 0.00 0.00 0.00 3.67
511 3767 3.737663 GCATTTGTTTGTTCTGCCAGTGA 60.738 43.478 0.00 0.00 0.00 3.41
512 3768 2.540931 GCATTTGTTTGTTCTGCCAGTG 59.459 45.455 0.00 0.00 0.00 3.66
513 3769 2.168106 TGCATTTGTTTGTTCTGCCAGT 59.832 40.909 0.00 0.00 31.89 4.00
514 3770 2.823984 TGCATTTGTTTGTTCTGCCAG 58.176 42.857 0.00 0.00 31.89 4.85
515 3771 2.975732 TGCATTTGTTTGTTCTGCCA 57.024 40.000 0.00 0.00 31.89 4.92
516 3772 4.529446 CATTTGCATTTGTTTGTTCTGCC 58.471 39.130 0.00 0.00 31.89 4.85
522 3778 1.872313 CGGGCATTTGCATTTGTTTGT 59.128 42.857 4.74 0.00 44.36 2.83
553 3809 0.470833 CCGGATCCTCCTCATCCACT 60.471 60.000 10.75 0.00 40.09 4.00
555 3811 1.838846 GCCGGATCCTCCTCATCCA 60.839 63.158 5.05 0.00 40.09 3.41
557 3813 1.872197 CTCGCCGGATCCTCCTCATC 61.872 65.000 5.05 0.00 33.30 2.92
558 3814 1.905843 CTCGCCGGATCCTCCTCAT 60.906 63.158 5.05 0.00 33.30 2.90
559 3815 2.519541 CTCGCCGGATCCTCCTCA 60.520 66.667 5.05 0.00 33.30 3.86
560 3816 3.984749 GCTCGCCGGATCCTCCTC 61.985 72.222 5.05 0.00 33.30 3.71
561 3817 4.841617 TGCTCGCCGGATCCTCCT 62.842 66.667 5.05 0.00 33.30 3.69
563 3819 2.279784 CTTGCTCGCCGGATCCTC 60.280 66.667 5.05 0.18 0.00 3.71
564 3820 3.077556 ACTTGCTCGCCGGATCCT 61.078 61.111 5.05 0.00 0.00 3.24
566 3822 2.956964 CGACTTGCTCGCCGGATC 60.957 66.667 5.05 0.00 35.06 3.36
578 3841 2.235016 CCGCACACGAACACGACTT 61.235 57.895 0.00 0.00 43.93 3.01
586 3849 1.590525 GTGTCTGTCCGCACACGAA 60.591 57.895 0.00 0.00 43.93 3.85
595 3858 2.939022 GTGCGCTTGTGTCTGTCC 59.061 61.111 9.73 0.00 0.00 4.02
611 3874 3.202906 ACAATTATACCAATCTGCGCGT 58.797 40.909 8.43 0.00 0.00 6.01
627 3890 9.469807 GTGAGTCGAGAAGATGATAATACAATT 57.530 33.333 0.00 0.00 0.00 2.32
628 3891 7.805542 CGTGAGTCGAGAAGATGATAATACAAT 59.194 37.037 0.00 0.00 42.86 2.71
629 3892 7.012044 TCGTGAGTCGAGAAGATGATAATACAA 59.988 37.037 0.00 0.00 44.01 2.41
630 3893 6.482308 TCGTGAGTCGAGAAGATGATAATACA 59.518 38.462 0.00 0.00 44.01 2.29
631 3894 6.889494 TCGTGAGTCGAGAAGATGATAATAC 58.111 40.000 0.00 0.00 44.01 1.89
652 3915 0.584876 CTTTTCTCCCGCGTTTTCGT 59.415 50.000 4.92 0.00 46.03 3.85
654 3917 1.232119 TCCTTTTCTCCCGCGTTTTC 58.768 50.000 4.92 0.00 0.00 2.29
655 3918 1.810755 GATCCTTTTCTCCCGCGTTTT 59.189 47.619 4.92 0.00 0.00 2.43
656 3919 1.450025 GATCCTTTTCTCCCGCGTTT 58.550 50.000 4.92 0.00 0.00 3.60
657 3920 0.392595 GGATCCTTTTCTCCCGCGTT 60.393 55.000 3.84 0.00 0.00 4.84
658 3921 1.221021 GGATCCTTTTCTCCCGCGT 59.779 57.895 3.84 0.00 0.00 6.01
659 3922 0.392461 TTGGATCCTTTTCTCCCGCG 60.392 55.000 14.23 0.00 0.00 6.46
660 3923 1.095600 GTTGGATCCTTTTCTCCCGC 58.904 55.000 14.23 0.00 0.00 6.13
661 3924 1.751437 GGTTGGATCCTTTTCTCCCG 58.249 55.000 14.23 0.00 0.00 5.14
662 3925 1.682087 CCGGTTGGATCCTTTTCTCCC 60.682 57.143 14.23 1.51 37.49 4.30
663 3926 1.280998 TCCGGTTGGATCCTTTTCTCC 59.719 52.381 14.23 5.49 40.17 3.71
664 3927 2.781681 TCCGGTTGGATCCTTTTCTC 57.218 50.000 14.23 0.00 40.17 2.87
682 3945 2.202892 GAATCGGGAGTGCGGGTC 60.203 66.667 0.00 0.00 0.00 4.46
685 3948 2.107141 GGAGAATCGGGAGTGCGG 59.893 66.667 0.00 0.00 34.37 5.69
686 3949 1.066587 GAGGAGAATCGGGAGTGCG 59.933 63.158 0.00 0.00 34.37 5.34
687 3950 1.066587 CGAGGAGAATCGGGAGTGC 59.933 63.158 0.00 0.00 39.04 4.40
688 3951 1.066587 GCGAGGAGAATCGGGAGTG 59.933 63.158 0.00 0.00 42.94 3.51
689 3952 0.970937 TTGCGAGGAGAATCGGGAGT 60.971 55.000 0.00 0.00 42.94 3.85
690 3953 0.390860 ATTGCGAGGAGAATCGGGAG 59.609 55.000 0.00 0.00 42.94 4.30
719 3982 2.619697 TGGGAGGAATTGCATTTGGA 57.380 45.000 0.00 0.00 0.00 3.53
725 3988 1.925255 AGGAGAATGGGAGGAATTGCA 59.075 47.619 0.00 0.00 0.00 4.08
731 3994 0.399091 ATGCGAGGAGAATGGGAGGA 60.399 55.000 0.00 0.00 0.00 3.71
761 4039 1.202452 GCCATTGCTAATCAACCCAGC 60.202 52.381 0.00 0.00 37.53 4.85
764 4042 3.891366 ACTATGCCATTGCTAATCAACCC 59.109 43.478 0.00 0.00 37.53 4.11
766 4044 4.261741 CCCACTATGCCATTGCTAATCAAC 60.262 45.833 0.00 0.00 37.53 3.18
767 4045 3.890756 CCCACTATGCCATTGCTAATCAA 59.109 43.478 0.00 0.00 39.32 2.57
768 4046 3.138098 TCCCACTATGCCATTGCTAATCA 59.862 43.478 0.00 0.00 38.71 2.57
769 4047 3.754965 TCCCACTATGCCATTGCTAATC 58.245 45.455 0.00 0.00 38.71 1.75
770 4048 3.882102 TCCCACTATGCCATTGCTAAT 57.118 42.857 0.00 0.00 38.71 1.73
772 4050 2.815215 GCATCCCACTATGCCATTGCTA 60.815 50.000 0.00 0.00 45.31 3.49
774 4052 0.316204 GCATCCCACTATGCCATTGC 59.684 55.000 0.00 0.00 45.31 3.56
781 4066 5.693104 GCAAAACAATATGCATCCCACTATG 59.307 40.000 0.19 0.00 42.12 2.23
784 4069 3.770933 AGCAAAACAATATGCATCCCACT 59.229 39.130 0.19 0.00 44.95 4.00
829 4114 1.525442 CCGGTGGGGGTGATTAGTC 59.475 63.158 0.00 0.00 0.00 2.59
858 4150 4.451150 TGGGGACGTGCGAGCATC 62.451 66.667 0.00 0.00 0.00 3.91
886 4178 2.064581 GGGAGGGGAAGCTTAGCGA 61.065 63.158 0.00 0.00 0.00 4.93
887 4179 2.506472 GGGAGGGGAAGCTTAGCG 59.494 66.667 0.00 0.00 0.00 4.26
888 4180 1.282653 AAGGGGAGGGGAAGCTTAGC 61.283 60.000 0.00 0.00 0.00 3.09
889 4181 0.840617 GAAGGGGAGGGGAAGCTTAG 59.159 60.000 0.00 0.00 0.00 2.18
890 4182 0.421904 AGAAGGGGAGGGGAAGCTTA 59.578 55.000 0.00 0.00 0.00 3.09
891 4183 0.478589 AAGAAGGGGAGGGGAAGCTT 60.479 55.000 0.00 0.00 0.00 3.74
892 4184 0.916845 GAAGAAGGGGAGGGGAAGCT 60.917 60.000 0.00 0.00 0.00 3.74
893 4185 0.916845 AGAAGAAGGGGAGGGGAAGC 60.917 60.000 0.00 0.00 0.00 3.86
894 4186 1.208706 GAGAAGAAGGGGAGGGGAAG 58.791 60.000 0.00 0.00 0.00 3.46
895 4187 0.253207 GGAGAAGAAGGGGAGGGGAA 60.253 60.000 0.00 0.00 0.00 3.97
899 4203 1.082954 TGGGGAGAAGAAGGGGAGG 59.917 63.158 0.00 0.00 0.00 4.30
940 4244 4.310600 GGGTTGGTTGGGGGTCCC 62.311 72.222 0.00 0.00 45.71 4.46
941 4245 4.310600 GGGGTTGGTTGGGGGTCC 62.311 72.222 0.00 0.00 0.00 4.46
942 4246 4.310600 GGGGGTTGGTTGGGGGTC 62.311 72.222 0.00 0.00 0.00 4.46
990 4294 4.155733 TAGTCCATGGGCGGCGTG 62.156 66.667 11.52 4.32 0.00 5.34
991 4295 4.157120 GTAGTCCATGGGCGGCGT 62.157 66.667 11.52 0.00 0.00 5.68
1077 4614 2.154580 CGATCCGAATGAGAATGAAGCG 59.845 50.000 0.00 0.00 0.00 4.68
1082 4619 4.185467 AGATCCGATCCGAATGAGAATG 57.815 45.455 4.67 0.00 0.00 2.67
1083 4620 4.526262 AGAAGATCCGATCCGAATGAGAAT 59.474 41.667 4.67 0.00 0.00 2.40
1120 4659 1.165270 GCAGTACCGCAAGAAACCAT 58.835 50.000 0.00 0.00 43.02 3.55
1125 4664 0.685097 AGGAAGCAGTACCGCAAGAA 59.315 50.000 3.48 0.00 43.02 2.52
1156 4702 2.480610 CCAATCGTTCCCGCCATGG 61.481 63.158 7.63 7.63 37.55 3.66
1166 4712 2.275380 GCCAAGGCACCCAATCGTT 61.275 57.895 6.14 0.00 41.49 3.85
1178 4738 3.437795 CAGAAGCGGCAGCCAAGG 61.438 66.667 13.30 0.00 46.67 3.61
1179 4739 3.437795 CCAGAAGCGGCAGCCAAG 61.438 66.667 13.30 0.00 46.67 3.61
1197 4757 4.357115 TGCAAACCGCGCGTAACG 62.357 61.111 29.95 15.91 46.97 3.18
1198 4758 2.498887 CTGCAAACCGCGCGTAAC 60.499 61.111 29.95 13.47 46.97 2.50
1319 4879 1.079127 GCTAGCAGCGGAAACCTCA 60.079 57.895 10.63 0.00 0.00 3.86
1344 4904 1.816370 CGACGAAGGAATCTCACGAG 58.184 55.000 0.00 0.00 0.00 4.18
1345 4905 0.179171 GCGACGAAGGAATCTCACGA 60.179 55.000 0.00 0.00 0.00 4.35
1347 4907 1.743855 GCGCGACGAAGGAATCTCAC 61.744 60.000 12.10 0.00 0.00 3.51
1348 4908 1.516386 GCGCGACGAAGGAATCTCA 60.516 57.895 12.10 0.00 0.00 3.27
1349 4909 1.475441 CTGCGCGACGAAGGAATCTC 61.475 60.000 12.10 0.00 0.00 2.75
1350 4910 1.517257 CTGCGCGACGAAGGAATCT 60.517 57.895 12.10 0.00 0.00 2.40
1351 4911 1.352156 AACTGCGCGACGAAGGAATC 61.352 55.000 12.10 0.00 36.73 2.52
1352 4912 1.352156 GAACTGCGCGACGAAGGAAT 61.352 55.000 12.10 0.00 36.73 3.01
1353 4913 2.019951 GAACTGCGCGACGAAGGAA 61.020 57.895 12.10 0.00 36.73 3.36
1354 4914 2.430244 GAACTGCGCGACGAAGGA 60.430 61.111 12.10 0.00 36.73 3.36
1355 4915 2.430921 AGAACTGCGCGACGAAGG 60.431 61.111 12.10 0.00 36.73 3.46
1356 4916 0.728129 TACAGAACTGCGCGACGAAG 60.728 55.000 12.10 3.32 38.69 3.79
1357 4917 0.109458 ATACAGAACTGCGCGACGAA 60.109 50.000 12.10 0.00 0.00 3.85
1358 4918 0.522705 GATACAGAACTGCGCGACGA 60.523 55.000 12.10 0.00 0.00 4.20
1359 4919 1.472276 GGATACAGAACTGCGCGACG 61.472 60.000 12.10 0.82 0.00 5.12
1360 4920 0.179134 AGGATACAGAACTGCGCGAC 60.179 55.000 12.10 0.88 41.41 5.19
1361 4921 0.530744 AAGGATACAGAACTGCGCGA 59.469 50.000 12.10 0.00 41.41 5.87
1362 4922 0.924090 GAAGGATACAGAACTGCGCG 59.076 55.000 0.00 0.00 41.41 6.86
1363 4923 2.301577 AGAAGGATACAGAACTGCGC 57.698 50.000 0.00 0.00 41.41 6.09
1364 4924 3.849911 TCAAGAAGGATACAGAACTGCG 58.150 45.455 1.46 0.00 41.41 5.18
1365 4925 4.826556 ACTCAAGAAGGATACAGAACTGC 58.173 43.478 1.46 0.00 41.41 4.40
1366 4926 6.146837 CACAACTCAAGAAGGATACAGAACTG 59.853 42.308 0.00 0.00 41.41 3.16
1367 4927 6.226787 CACAACTCAAGAAGGATACAGAACT 58.773 40.000 0.00 0.00 41.41 3.01
1387 4947 1.638070 TGGTCATTATGGAGGGCACAA 59.362 47.619 0.00 0.00 0.00 3.33
1392 4952 4.202441 CAAGAACTGGTCATTATGGAGGG 58.798 47.826 0.00 0.00 0.00 4.30
1397 4961 5.439721 TCCATCCAAGAACTGGTCATTATG 58.560 41.667 0.00 0.00 46.51 1.90
1398 4962 5.715439 TCCATCCAAGAACTGGTCATTAT 57.285 39.130 0.00 0.00 46.51 1.28
1402 4966 3.754965 CTTTCCATCCAAGAACTGGTCA 58.245 45.455 0.00 0.00 46.51 4.02
1413 4977 1.000521 CCTGCCTGCTTTCCATCCA 60.001 57.895 0.00 0.00 0.00 3.41
1414 4978 2.421399 GCCTGCCTGCTTTCCATCC 61.421 63.158 0.00 0.00 0.00 3.51
1415 4979 1.041447 ATGCCTGCCTGCTTTCCATC 61.041 55.000 0.00 0.00 0.00 3.51
1416 4980 0.259647 TATGCCTGCCTGCTTTCCAT 59.740 50.000 0.00 0.00 0.00 3.41
1468 5032 2.048127 GTGGACCTGTCGCTGGAC 60.048 66.667 9.15 3.98 43.71 4.02
1509 5077 1.550976 GAAGGGAAGAAGAGAAGCCGA 59.449 52.381 0.00 0.00 0.00 5.54
1514 5082 2.552367 GGGGAGAAGGGAAGAAGAGAA 58.448 52.381 0.00 0.00 0.00 2.87
1548 5119 4.083537 CGTCGAATTCAGGACCAAAAATGA 60.084 41.667 6.22 0.00 0.00 2.57
1603 5182 1.153549 GCATCGACTGGGTGAGGAC 60.154 63.158 0.00 0.00 0.00 3.85
1609 5188 2.665000 CAGTGGCATCGACTGGGT 59.335 61.111 0.00 0.00 37.72 4.51
1622 5201 1.134759 ACATAGCAGAGCAGAGCAGTG 60.135 52.381 0.00 0.00 0.00 3.66
1639 5218 2.664424 CGCCGAATTCAACACGAAACAT 60.664 45.455 6.22 0.00 37.12 2.71
1702 5293 2.124570 CCAATCCCGTGCCTCCAG 60.125 66.667 0.00 0.00 0.00 3.86
1728 5319 4.639171 CGTGCGCCCAAAACACCC 62.639 66.667 4.18 0.00 0.00 4.61
1729 5320 2.414840 AATCGTGCGCCCAAAACACC 62.415 55.000 4.18 0.00 0.00 4.16
1731 5322 0.103208 AAAATCGTGCGCCCAAAACA 59.897 45.000 4.18 0.00 0.00 2.83
1732 5323 0.781787 GAAAATCGTGCGCCCAAAAC 59.218 50.000 4.18 0.00 0.00 2.43
1768 5360 2.500229 TCACGGGAGAATGGACAAAAC 58.500 47.619 0.00 0.00 0.00 2.43
1776 5368 1.134818 TGACGGAATCACGGGAGAATG 60.135 52.381 0.00 0.00 38.39 2.67
1777 5369 1.191535 TGACGGAATCACGGGAGAAT 58.808 50.000 0.00 0.00 38.39 2.40
1786 5380 4.533919 ATTGCCAAATTTGACGGAATCA 57.466 36.364 19.86 3.21 34.65 2.57
1902 5497 4.465512 CGCCCGACTGCATTGCAC 62.466 66.667 7.38 0.00 33.79 4.57
1945 5540 2.808315 TCGAGCCCGAGAAGCATC 59.192 61.111 0.00 0.00 40.30 3.91
1960 5555 1.739562 GGAGTGCTGGTGCTTCTCG 60.740 63.158 0.00 0.00 39.59 4.04
2041 5636 6.682423 TTTGATGAACTGTATGTATGGCAG 57.318 37.500 0.00 0.00 36.41 4.85
2043 5638 5.916883 GCATTTGATGAACTGTATGTATGGC 59.083 40.000 0.00 0.00 0.00 4.40
2044 5639 7.268199 AGCATTTGATGAACTGTATGTATGG 57.732 36.000 0.00 0.00 0.00 2.74
2046 5641 9.783081 TGATAGCATTTGATGAACTGTATGTAT 57.217 29.630 0.00 0.00 0.00 2.29
2055 5650 8.375608 ACTGTAGATGATAGCATTTGATGAAC 57.624 34.615 0.00 0.00 34.11 3.18
2066 5661 7.976734 AGTGTTCAGTAAACTGTAGATGATAGC 59.023 37.037 9.81 0.00 44.12 2.97
2096 5694 3.143728 GGACACGATTGGTACCAAAAGT 58.856 45.455 30.31 26.76 39.55 2.66
2101 5699 1.001520 CTGTGGACACGATTGGTACCA 59.998 52.381 11.60 11.60 33.74 3.25
2303 5904 3.064987 CTTCTCGGCGTCGTCCCAT 62.065 63.158 10.18 0.00 37.69 4.00
2372 5973 1.966451 CTTCTTCGGCGCAAACCCT 60.966 57.895 10.83 0.00 0.00 4.34
2500 6101 5.413499 ACATCAAAAGCATGGCAAGTTATC 58.587 37.500 0.00 0.00 0.00 1.75
2502 6103 4.870123 ACATCAAAAGCATGGCAAGTTA 57.130 36.364 0.00 0.00 0.00 2.24
2504 6105 3.756933 AACATCAAAAGCATGGCAAGT 57.243 38.095 0.00 0.00 0.00 3.16
2505 6106 5.427036 AAAAACATCAAAAGCATGGCAAG 57.573 34.783 0.00 0.00 0.00 4.01
2509 6110 7.863666 ACAACATAAAAACATCAAAAGCATGG 58.136 30.769 0.00 0.00 0.00 3.66
2513 6114 8.268738 GTGAGACAACATAAAAACATCAAAAGC 58.731 33.333 0.00 0.00 0.00 3.51
2527 6128 8.857098 AGTAGTAAAACAGAGTGAGACAACATA 58.143 33.333 0.00 0.00 0.00 2.29
2530 6131 8.351461 AGTAGTAGTAAAACAGAGTGAGACAAC 58.649 37.037 0.00 0.00 0.00 3.32
2554 6155 4.758688 TCACATCGCAGTCATTATCAAGT 58.241 39.130 0.00 0.00 0.00 3.16
2555 6156 5.464389 TGATCACATCGCAGTCATTATCAAG 59.536 40.000 0.00 0.00 0.00 3.02
2556 6157 5.358922 TGATCACATCGCAGTCATTATCAA 58.641 37.500 0.00 0.00 0.00 2.57
2563 6164 2.817901 CTCATGATCACATCGCAGTCA 58.182 47.619 0.00 0.00 34.15 3.41
2569 6170 4.870221 TTTTCAGCTCATGATCACATCG 57.130 40.909 0.00 0.00 37.89 3.84
2604 6209 5.167218 GCAAAGATATTGCTCTCAAGTCC 57.833 43.478 5.94 0.00 41.87 3.85
2643 6248 5.140747 AGTTCAGACACACATCTTAGGAC 57.859 43.478 0.00 0.00 0.00 3.85
2668 6273 4.713553 TGAAACATGCTAGTTGAACCTCA 58.286 39.130 0.00 0.00 0.00 3.86
2814 6419 1.535462 CCTTTTCGCACCACCAACTAG 59.465 52.381 0.00 0.00 0.00 2.57
2837 6442 8.180920 CCTACTACAATGATATCATCAGAGTCG 58.819 40.741 18.44 15.12 43.53 4.18
2839 6444 7.093552 GGCCTACTACAATGATATCATCAGAGT 60.094 40.741 18.44 20.05 43.53 3.24
2848 6453 6.942163 ACATCAGGCCTACTACAATGATAT 57.058 37.500 3.98 0.00 0.00 1.63
2880 6485 1.259609 TGGCAGATTGGCTTTTCTGG 58.740 50.000 11.83 0.00 44.10 3.86
2928 6533 1.202521 CCCCACTTGAAACTGTTTGCC 60.203 52.381 11.03 0.00 0.00 4.52
3248 6855 5.676532 TTGTACCAACACCAAATTCTACG 57.323 39.130 0.00 0.00 34.61 3.51
3263 6870 4.661222 TCTTGCTGGAATCAATTGTACCA 58.339 39.130 5.13 11.92 0.00 3.25
3341 6948 3.665675 CTTGCCTAGCCGTTCGCCT 62.666 63.158 0.00 0.00 38.78 5.52
3401 7008 2.474359 TGGAACATTTGCGAAATTTGCG 59.526 40.909 0.00 0.39 34.24 4.85
3473 7080 1.517242 ACTTTGCTTTCTCTGCCTCG 58.483 50.000 0.00 0.00 0.00 4.63
3533 7144 2.048444 ACAGTTCCGCTAGTATCCGA 57.952 50.000 0.00 0.00 0.00 4.55
3546 7163 9.774742 GATTTGAGGATTGTTACATTACAGTTC 57.225 33.333 0.00 0.00 0.00 3.01
3574 7191 7.970061 GTCATCAATGCAAGCTTAATTCAGTAA 59.030 33.333 0.00 0.00 0.00 2.24
3581 7198 6.978659 CAGAATGTCATCAATGCAAGCTTAAT 59.021 34.615 0.00 0.00 0.00 1.40
3610 7227 7.221259 CACGTGTATATTTCTACCAAATGACGA 59.779 37.037 7.58 0.00 0.00 4.20
3611 7228 7.009815 ACACGTGTATATTTCTACCAAATGACG 59.990 37.037 21.98 0.00 0.00 4.35
3634 7251 2.498167 AGTGTCCATCTCTTTGCACAC 58.502 47.619 0.00 0.00 35.42 3.82
3648 7265 2.092429 TGGGCCAATCAAGATAGTGTCC 60.092 50.000 2.13 0.00 0.00 4.02
3679 7296 5.808042 AGATCATATTCACAAGTGTGCAC 57.192 39.130 10.75 10.75 45.25 4.57
3697 7314 2.031333 GGGAGAATGCGCAATCAAGATC 60.031 50.000 26.25 14.84 0.00 2.75
3757 7374 5.422214 TCCCTCTGAAACCTACAAGAATC 57.578 43.478 0.00 0.00 0.00 2.52
3887 7504 5.424121 ACATTTATACTCCAAGCGCAATC 57.576 39.130 11.47 0.00 0.00 2.67
3909 7526 6.726490 AGTAACAGTTCACTTCACTCCTTA 57.274 37.500 0.00 0.00 0.00 2.69
3920 7537 7.840342 ATCAGATCATCAAGTAACAGTTCAC 57.160 36.000 0.00 0.00 0.00 3.18
3921 7538 7.981789 GGTATCAGATCATCAAGTAACAGTTCA 59.018 37.037 0.00 0.00 0.00 3.18
3925 7542 7.437565 CAGTGGTATCAGATCATCAAGTAACAG 59.562 40.741 0.00 0.00 0.00 3.16
3963 7580 5.455392 ACGAAATTTCAAGATGTGCTTCAG 58.545 37.500 17.99 0.00 33.60 3.02
3975 7592 6.464222 ACAGATCAGACCTACGAAATTTCAA 58.536 36.000 17.99 4.71 0.00 2.69
3978 7595 8.258007 TGATTACAGATCAGACCTACGAAATTT 58.742 33.333 0.00 0.00 0.00 1.82
4093 7719 9.884465 GCTATGAGCTGTACAATTTTATTTAGG 57.116 33.333 0.00 0.00 38.45 2.69
4137 7821 8.398665 GGAAAGTTATTTCGTTAGATGCTGAAT 58.601 33.333 0.00 0.00 44.87 2.57
4232 7916 2.018727 CTGCTCTGCTCCTCGCTGAT 62.019 60.000 0.00 0.00 44.19 2.90
4242 7926 1.947597 CTCTTCGCCTCTGCTCTGCT 61.948 60.000 0.00 0.00 34.43 4.24
4358 8042 2.547640 ATAGGCACCAGCACCAGCAG 62.548 60.000 0.00 0.00 45.49 4.24
4511 8215 8.846211 TGATGAATACGCAGATATTATCCGATA 58.154 33.333 8.66 0.00 0.00 2.92
4530 8246 9.729023 TTTTAATTCGCGATGTAAATGATGAAT 57.271 25.926 10.88 0.00 0.00 2.57
4565 8281 2.758770 TTCCTCGCCAAAGACGGTCG 62.759 60.000 1.89 0.00 0.00 4.79
4571 8287 2.073816 GTCGAATTTCCTCGCCAAAGA 58.926 47.619 0.00 0.00 38.73 2.52
4600 8316 8.603304 ACTGGATTTCCTACGGCTATAATAAAT 58.397 33.333 0.00 0.00 36.82 1.40
4601 8317 7.970102 ACTGGATTTCCTACGGCTATAATAAA 58.030 34.615 0.00 0.00 36.82 1.40
4602 8318 7.549147 ACTGGATTTCCTACGGCTATAATAA 57.451 36.000 0.00 0.00 36.82 1.40
4603 8319 7.549147 AACTGGATTTCCTACGGCTATAATA 57.451 36.000 0.00 0.00 36.82 0.98
4604 8320 6.435292 AACTGGATTTCCTACGGCTATAAT 57.565 37.500 0.00 0.00 36.82 1.28
4613 8329 8.225777 CGTGTTAACTAAAACTGGATTTCCTAC 58.774 37.037 7.22 0.00 36.82 3.18
4662 8388 9.836864 AGGGATTTCATTTTCCTTTTTATATGC 57.163 29.630 0.00 0.00 32.34 3.14
4679 8405 7.487822 TTTTACCATTATGCAAGGGATTTCA 57.512 32.000 0.00 0.00 37.84 2.69
4680 8406 8.962884 ATTTTTACCATTATGCAAGGGATTTC 57.037 30.769 0.00 0.00 37.84 2.17
4696 8426 5.179742 CGTGCTGGTAGTACAATTTTTACCA 59.820 40.000 8.63 8.63 42.31 3.25
4697 8427 5.179929 ACGTGCTGGTAGTACAATTTTTACC 59.820 40.000 2.06 0.00 36.84 2.85
4772 8513 6.183360 GCTCGCTAATTCCACCATTATTATCC 60.183 42.308 0.00 0.00 0.00 2.59
4829 8585 4.889856 TGGATCCGGCATCGCACG 62.890 66.667 7.39 0.00 34.56 5.34
4830 8586 2.513666 TTGGATCCGGCATCGCAC 60.514 61.111 7.39 0.00 34.56 5.34
4831 8587 2.513666 GTTGGATCCGGCATCGCA 60.514 61.111 7.39 0.00 34.56 5.10
4832 8588 3.640000 CGTTGGATCCGGCATCGC 61.640 66.667 7.39 0.00 34.56 4.58
4833 8589 2.967076 CCGTTGGATCCGGCATCG 60.967 66.667 7.39 7.02 38.85 3.84
4845 8601 2.436646 AGCGATTCCCAGCCGTTG 60.437 61.111 0.00 0.00 0.00 4.10
4846 8602 2.125106 GAGCGATTCCCAGCCGTT 60.125 61.111 0.00 0.00 0.00 4.44
4915 8680 2.873557 ATCGGATCAGGACACCCCGT 62.874 60.000 0.00 0.00 40.87 5.28
4916 8681 2.088674 GATCGGATCAGGACACCCCG 62.089 65.000 13.02 0.00 40.87 5.73
4917 8682 1.749033 GATCGGATCAGGACACCCC 59.251 63.158 13.02 0.00 0.00 4.95
4921 8686 2.093500 CACTTTGGATCGGATCAGGACA 60.093 50.000 18.99 5.56 0.00 4.02
4923 8688 2.168521 GACACTTTGGATCGGATCAGGA 59.831 50.000 18.99 2.18 0.00 3.86
4924 8689 2.555199 GACACTTTGGATCGGATCAGG 58.445 52.381 18.99 8.32 0.00 3.86
4925 8690 2.169352 AGGACACTTTGGATCGGATCAG 59.831 50.000 18.99 10.61 0.00 2.90
4928 8693 1.909302 ACAGGACACTTTGGATCGGAT 59.091 47.619 0.00 0.00 0.00 4.18
4929 8694 1.348064 ACAGGACACTTTGGATCGGA 58.652 50.000 0.00 0.00 0.00 4.55
4930 8695 3.543680 ATACAGGACACTTTGGATCGG 57.456 47.619 0.00 0.00 0.00 4.18
4932 8697 8.506168 TTCATTTATACAGGACACTTTGGATC 57.494 34.615 0.00 0.00 0.00 3.36
4933 8698 8.739972 GTTTCATTTATACAGGACACTTTGGAT 58.260 33.333 0.00 0.00 0.00 3.41
4934 8699 7.094975 CGTTTCATTTATACAGGACACTTTGGA 60.095 37.037 0.00 0.00 0.00 3.53
4935 8700 7.021196 CGTTTCATTTATACAGGACACTTTGG 58.979 38.462 0.00 0.00 0.00 3.28
4936 8701 7.021196 CCGTTTCATTTATACAGGACACTTTG 58.979 38.462 0.00 0.00 0.00 2.77
4937 8702 6.349033 GCCGTTTCATTTATACAGGACACTTT 60.349 38.462 0.00 0.00 0.00 2.66
4978 8743 1.138671 GGCGAGAGACAGAGTCAGC 59.861 63.158 0.00 0.21 40.66 4.26
4994 8769 1.092348 GTTAGGGTTTGGATCGTGGC 58.908 55.000 0.00 0.00 0.00 5.01
4996 8771 0.725117 GCGTTAGGGTTTGGATCGTG 59.275 55.000 0.00 0.00 0.00 4.35
4997 8772 0.738412 CGCGTTAGGGTTTGGATCGT 60.738 55.000 0.00 0.00 0.00 3.73
5001 8786 0.945265 CGTTCGCGTTAGGGTTTGGA 60.945 55.000 5.77 0.00 35.57 3.53
5032 8817 3.222855 CCCTGCCTCGCTCGATCT 61.223 66.667 0.00 0.00 0.00 2.75
5207 9000 2.868566 TTGGCCAGGAACCCCCAT 60.869 61.111 5.11 0.00 37.41 4.00
5334 9127 3.957535 CATGCCAAGCGATCGCCC 61.958 66.667 34.89 20.99 43.17 6.13
5335 9128 4.619140 GCATGCCAAGCGATCGCC 62.619 66.667 34.89 20.58 43.17 5.54
5336 9129 4.619140 GGCATGCCAAGCGATCGC 62.619 66.667 32.15 32.15 37.45 4.58
5337 9130 4.303603 CGGCATGCCAAGCGATCG 62.304 66.667 34.93 15.41 35.37 3.69
5338 9131 3.957535 CCGGCATGCCAAGCGATC 61.958 66.667 34.93 6.89 35.37 3.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.