Multiple sequence alignment - TraesCS4D01G343100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G343100 chr4D 100.000 2518 0 0 1 2518 499311458 499313975 0.000000e+00 4650.0
1 TraesCS4D01G343100 chr4D 85.441 522 62 10 1877 2390 175807868 175808383 4.770000e-147 531.0
2 TraesCS4D01G343100 chr4D 89.902 307 28 3 480 783 226385249 226384943 2.350000e-105 392.0
3 TraesCS4D01G343100 chr4D 89.216 306 31 2 480 783 226455341 226455036 5.080000e-102 381.0
4 TraesCS4D01G343100 chr4D 97.260 73 1 1 2441 2512 499313831 499313903 3.400000e-24 122.0
5 TraesCS4D01G343100 chr4D 97.260 73 1 1 2374 2446 499313898 499313969 3.400000e-24 122.0
6 TraesCS4D01G343100 chr4D 85.333 75 7 4 201 271 66323718 66323644 9.660000e-10 75.0
7 TraesCS4D01G343100 chr4B 92.290 1297 69 16 782 2064 642168774 642170053 0.000000e+00 1812.0
8 TraesCS4D01G343100 chr4B 85.499 531 66 9 1877 2403 330747061 330746538 6.130000e-151 544.0
9 TraesCS4D01G343100 chr4B 88.596 114 5 5 365 475 642168667 642168775 5.650000e-27 132.0
10 TraesCS4D01G343100 chr5A 86.050 1276 108 36 365 1607 680104985 680106223 0.000000e+00 1306.0
11 TraesCS4D01G343100 chr2D 85.634 536 62 10 1877 2405 338714491 338715018 1.320000e-152 549.0
12 TraesCS4D01G343100 chr2D 84.686 542 63 15 1877 2406 332344551 332345084 7.980000e-145 523.0
13 TraesCS4D01G343100 chr2D 89.735 302 30 1 478 778 565521448 565521147 3.930000e-103 385.0
14 TraesCS4D01G343100 chr2D 94.444 54 2 1 1712 1765 641615131 641615183 5.770000e-12 82.4
15 TraesCS4D01G343100 chr2B 84.826 547 69 12 1864 2403 102129197 102129736 2.850000e-149 538.0
16 TraesCS4D01G343100 chr1D 84.743 544 72 9 1871 2407 31678954 31679493 3.690000e-148 534.0
17 TraesCS4D01G343100 chr3D 84.944 538 66 11 1877 2406 541829408 541829938 4.770000e-147 531.0
18 TraesCS4D01G343100 chr3D 84.270 534 76 6 1878 2406 292749988 292749458 4.800000e-142 514.0
19 TraesCS4D01G343100 chr3D 88.997 309 32 2 474 780 488121204 488120896 5.080000e-102 381.0
20 TraesCS4D01G343100 chr3D 89.439 303 30 2 478 778 528115689 528115387 5.080000e-102 381.0
21 TraesCS4D01G343100 chr5D 84.644 534 65 12 1882 2406 118806158 118805633 1.340000e-142 516.0
22 TraesCS4D01G343100 chr5D 89.701 301 28 3 478 776 375170919 375170620 5.080000e-102 381.0
23 TraesCS4D01G343100 chr5D 100.000 41 0 0 1718 1758 549645481 549645441 2.690000e-10 76.8
24 TraesCS4D01G343100 chr5D 86.567 67 6 3 1693 1758 520064546 520064482 1.250000e-08 71.3
25 TraesCS4D01G343100 chr2A 90.066 302 29 1 478 778 459017305 459017004 8.450000e-105 390.0
26 TraesCS4D01G343100 chr7B 89.439 303 30 2 478 778 489831696 489831394 5.080000e-102 381.0
27 TraesCS4D01G343100 chr7B 91.935 62 2 3 1703 1762 196390883 196390823 1.610000e-12 84.2
28 TraesCS4D01G343100 chr7B 92.857 56 2 2 1703 1758 11922460 11922407 2.080000e-11 80.5
29 TraesCS4D01G343100 chr7B 88.889 63 5 2 1698 1758 388175902 388175840 2.690000e-10 76.8
30 TraesCS4D01G343100 chr7A 86.726 339 39 5 444 779 734933562 734933897 3.060000e-99 372.0
31 TraesCS4D01G343100 chr6B 86.957 69 9 0 1693 1761 142092165 142092233 7.470000e-11 78.7
32 TraesCS4D01G343100 chr4A 90.323 62 2 4 1703 1762 6936608 6936549 7.470000e-11 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G343100 chr4D 499311458 499313975 2517 False 1631.333333 4650 98.173333 1 2518 3 chr4D.!!$F2 2517
1 TraesCS4D01G343100 chr4D 175807868 175808383 515 False 531.000000 531 85.441000 1877 2390 1 chr4D.!!$F1 513
2 TraesCS4D01G343100 chr4B 642168667 642170053 1386 False 972.000000 1812 90.443000 365 2064 2 chr4B.!!$F1 1699
3 TraesCS4D01G343100 chr4B 330746538 330747061 523 True 544.000000 544 85.499000 1877 2403 1 chr4B.!!$R1 526
4 TraesCS4D01G343100 chr5A 680104985 680106223 1238 False 1306.000000 1306 86.050000 365 1607 1 chr5A.!!$F1 1242
5 TraesCS4D01G343100 chr2D 338714491 338715018 527 False 549.000000 549 85.634000 1877 2405 1 chr2D.!!$F2 528
6 TraesCS4D01G343100 chr2D 332344551 332345084 533 False 523.000000 523 84.686000 1877 2406 1 chr2D.!!$F1 529
7 TraesCS4D01G343100 chr2B 102129197 102129736 539 False 538.000000 538 84.826000 1864 2403 1 chr2B.!!$F1 539
8 TraesCS4D01G343100 chr1D 31678954 31679493 539 False 534.000000 534 84.743000 1871 2407 1 chr1D.!!$F1 536
9 TraesCS4D01G343100 chr3D 541829408 541829938 530 False 531.000000 531 84.944000 1877 2406 1 chr3D.!!$F1 529
10 TraesCS4D01G343100 chr3D 292749458 292749988 530 True 514.000000 514 84.270000 1878 2406 1 chr3D.!!$R1 528
11 TraesCS4D01G343100 chr5D 118805633 118806158 525 True 516.000000 516 84.644000 1882 2406 1 chr5D.!!$R1 524

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
79 80 0.179171 GCTACAACTCGCGTCAGCTA 60.179 55.0 5.77 0.0 42.32 3.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1541 1581 0.317854 GAAACTGTCGGTTGCCTTGC 60.318 55.0 0.0 0.0 38.29 4.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.123804 AGCCGATAACATGCTCTAAACG 58.876 45.455 0.00 0.00 0.00 3.60
22 23 2.221055 GCCGATAACATGCTCTAAACGG 59.779 50.000 0.00 0.00 40.60 4.44
23 24 2.221055 CCGATAACATGCTCTAAACGGC 59.779 50.000 0.00 0.00 0.00 5.68
24 25 2.863740 CGATAACATGCTCTAAACGGCA 59.136 45.455 0.00 0.00 42.80 5.69
25 26 3.302480 CGATAACATGCTCTAAACGGCAC 60.302 47.826 0.00 0.00 41.39 5.01
26 27 2.185004 AACATGCTCTAAACGGCACT 57.815 45.000 0.00 0.00 41.39 4.40
27 28 1.442769 ACATGCTCTAAACGGCACTG 58.557 50.000 0.00 0.00 41.39 3.66
28 29 1.001974 ACATGCTCTAAACGGCACTGA 59.998 47.619 0.00 0.00 41.39 3.41
29 30 2.283298 CATGCTCTAAACGGCACTGAT 58.717 47.619 0.00 0.00 41.39 2.90
30 31 1.725641 TGCTCTAAACGGCACTGATG 58.274 50.000 0.00 0.00 33.23 3.07
44 45 4.979564 CACTGATGCTACATGTTATCGG 57.020 45.455 2.30 13.15 33.28 4.18
45 46 3.185188 CACTGATGCTACATGTTATCGGC 59.815 47.826 18.57 11.07 30.80 5.54
46 47 3.070159 ACTGATGCTACATGTTATCGGCT 59.930 43.478 18.57 9.12 30.80 5.52
47 48 3.392882 TGATGCTACATGTTATCGGCTG 58.607 45.455 2.30 0.00 0.00 4.85
48 49 3.069443 TGATGCTACATGTTATCGGCTGA 59.931 43.478 2.30 0.00 0.00 4.26
49 50 2.821546 TGCTACATGTTATCGGCTGAC 58.178 47.619 2.30 0.00 0.00 3.51
50 51 1.787155 GCTACATGTTATCGGCTGACG 59.213 52.381 2.30 0.00 46.11 4.35
51 52 1.787155 CTACATGTTATCGGCTGACGC 59.213 52.381 2.30 0.00 43.86 5.19
52 53 1.145759 ACATGTTATCGGCTGACGCG 61.146 55.000 3.53 3.53 43.86 6.01
53 54 0.869880 CATGTTATCGGCTGACGCGA 60.870 55.000 15.93 0.00 43.86 5.87
54 55 0.595053 ATGTTATCGGCTGACGCGAG 60.595 55.000 15.93 0.36 43.86 5.03
55 56 2.278596 TTATCGGCTGACGCGAGC 60.279 61.111 15.93 13.04 43.86 5.03
56 57 4.607606 TATCGGCTGACGCGAGCG 62.608 66.667 15.93 16.38 43.86 5.03
73 74 4.554163 GAGTGCTACAACTCGCGT 57.446 55.556 5.77 0.00 37.44 6.01
74 75 2.350833 GAGTGCTACAACTCGCGTC 58.649 57.895 5.77 0.00 37.44 5.19
75 76 0.386858 GAGTGCTACAACTCGCGTCA 60.387 55.000 5.77 0.00 37.44 4.35
76 77 0.387367 AGTGCTACAACTCGCGTCAG 60.387 55.000 5.77 0.00 0.00 3.51
77 78 1.733041 TGCTACAACTCGCGTCAGC 60.733 57.895 5.77 7.63 40.74 4.26
78 79 1.444553 GCTACAACTCGCGTCAGCT 60.445 57.895 5.77 0.00 42.32 4.24
79 80 0.179171 GCTACAACTCGCGTCAGCTA 60.179 55.000 5.77 0.00 42.32 3.32
80 81 1.731424 GCTACAACTCGCGTCAGCTAA 60.731 52.381 5.77 0.00 42.32 3.09
81 82 2.592194 CTACAACTCGCGTCAGCTAAA 58.408 47.619 5.77 0.00 42.32 1.85
82 83 1.860676 ACAACTCGCGTCAGCTAAAA 58.139 45.000 5.77 0.00 42.32 1.52
83 84 1.792949 ACAACTCGCGTCAGCTAAAAG 59.207 47.619 5.77 0.00 42.32 2.27
84 85 1.126846 CAACTCGCGTCAGCTAAAAGG 59.873 52.381 5.77 0.00 42.32 3.11
85 86 1.014564 ACTCGCGTCAGCTAAAAGGC 61.015 55.000 5.77 0.00 42.32 4.35
86 87 1.005512 TCGCGTCAGCTAAAAGGCA 60.006 52.632 5.77 0.00 42.32 4.75
87 88 1.132640 CGCGTCAGCTAAAAGGCAC 59.867 57.895 0.00 0.00 42.32 5.01
88 89 1.291877 CGCGTCAGCTAAAAGGCACT 61.292 55.000 0.00 0.00 41.27 4.40
89 90 0.875059 GCGTCAGCTAAAAGGCACTT 59.125 50.000 0.00 0.00 46.80 3.16
90 91 2.073816 GCGTCAGCTAAAAGGCACTTA 58.926 47.619 0.00 0.00 44.93 2.24
91 92 2.094417 GCGTCAGCTAAAAGGCACTTAG 59.906 50.000 0.00 2.23 44.93 2.18
92 93 5.015020 GCGTCAGCTAAAAGGCACTTAGG 62.015 52.174 7.47 0.00 44.93 2.69
101 102 2.479566 AGGCACTTAGGTCACATGTG 57.520 50.000 20.18 20.18 27.25 3.21
102 103 1.699634 AGGCACTTAGGTCACATGTGT 59.300 47.619 24.63 9.13 27.25 3.72
103 104 2.106511 AGGCACTTAGGTCACATGTGTT 59.893 45.455 24.63 14.10 27.25 3.32
104 105 2.226437 GGCACTTAGGTCACATGTGTTG 59.774 50.000 24.63 12.22 0.00 3.33
105 106 3.138304 GCACTTAGGTCACATGTGTTGA 58.862 45.455 24.63 3.51 0.00 3.18
106 107 3.187227 GCACTTAGGTCACATGTGTTGAG 59.813 47.826 24.63 17.97 0.00 3.02
107 108 4.380531 CACTTAGGTCACATGTGTTGAGT 58.619 43.478 24.63 18.51 0.00 3.41
108 109 4.816385 CACTTAGGTCACATGTGTTGAGTT 59.184 41.667 24.63 8.97 0.00 3.01
109 110 5.050091 CACTTAGGTCACATGTGTTGAGTTC 60.050 44.000 24.63 8.29 0.00 3.01
110 111 3.845781 AGGTCACATGTGTTGAGTTCT 57.154 42.857 24.63 10.15 0.00 3.01
111 112 3.470709 AGGTCACATGTGTTGAGTTCTG 58.529 45.455 24.63 0.00 0.00 3.02
112 113 2.549754 GGTCACATGTGTTGAGTTCTGG 59.450 50.000 24.63 0.00 0.00 3.86
113 114 2.031682 GTCACATGTGTTGAGTTCTGGC 60.032 50.000 24.63 0.00 0.00 4.85
114 115 1.948834 CACATGTGTTGAGTTCTGGCA 59.051 47.619 18.03 0.00 0.00 4.92
115 116 1.949525 ACATGTGTTGAGTTCTGGCAC 59.050 47.619 0.00 0.00 0.00 5.01
116 117 1.948834 CATGTGTTGAGTTCTGGCACA 59.051 47.619 0.00 0.00 42.99 4.57
117 118 2.121291 TGTGTTGAGTTCTGGCACAA 57.879 45.000 0.00 0.00 38.70 3.33
118 119 2.653726 TGTGTTGAGTTCTGGCACAAT 58.346 42.857 0.00 0.00 38.70 2.71
119 120 3.814625 TGTGTTGAGTTCTGGCACAATA 58.185 40.909 0.00 0.00 38.70 1.90
120 121 4.397420 TGTGTTGAGTTCTGGCACAATAT 58.603 39.130 0.00 0.00 38.70 1.28
121 122 4.455533 TGTGTTGAGTTCTGGCACAATATC 59.544 41.667 0.00 0.00 38.70 1.63
122 123 4.697352 GTGTTGAGTTCTGGCACAATATCT 59.303 41.667 0.00 0.00 38.70 1.98
123 124 5.182001 GTGTTGAGTTCTGGCACAATATCTT 59.818 40.000 0.00 0.00 38.70 2.40
124 125 5.769662 TGTTGAGTTCTGGCACAATATCTTT 59.230 36.000 0.00 0.00 38.70 2.52
125 126 6.265196 TGTTGAGTTCTGGCACAATATCTTTT 59.735 34.615 0.00 0.00 38.70 2.27
126 127 7.446931 TGTTGAGTTCTGGCACAATATCTTTTA 59.553 33.333 0.00 0.00 38.70 1.52
127 128 7.377766 TGAGTTCTGGCACAATATCTTTTAC 57.622 36.000 0.00 0.00 38.70 2.01
128 129 6.092122 TGAGTTCTGGCACAATATCTTTTACG 59.908 38.462 0.00 0.00 38.70 3.18
129 130 6.170506 AGTTCTGGCACAATATCTTTTACGA 58.829 36.000 0.00 0.00 38.70 3.43
130 131 6.313905 AGTTCTGGCACAATATCTTTTACGAG 59.686 38.462 0.00 0.00 38.70 4.18
131 132 5.116180 TCTGGCACAATATCTTTTACGAGG 58.884 41.667 0.00 0.00 38.70 4.63
132 133 3.625764 TGGCACAATATCTTTTACGAGGC 59.374 43.478 0.00 0.00 31.92 4.70
133 134 3.003378 GGCACAATATCTTTTACGAGGCC 59.997 47.826 0.00 0.00 0.00 5.19
134 135 3.877508 GCACAATATCTTTTACGAGGCCT 59.122 43.478 3.86 3.86 0.00 5.19
135 136 4.335594 GCACAATATCTTTTACGAGGCCTT 59.664 41.667 6.77 0.00 0.00 4.35
136 137 5.526111 GCACAATATCTTTTACGAGGCCTTA 59.474 40.000 6.77 0.00 0.00 2.69
137 138 6.204882 GCACAATATCTTTTACGAGGCCTTAT 59.795 38.462 6.77 0.00 0.00 1.73
138 139 7.386848 GCACAATATCTTTTACGAGGCCTTATA 59.613 37.037 6.77 0.00 0.00 0.98
139 140 9.436957 CACAATATCTTTTACGAGGCCTTATAT 57.563 33.333 6.77 0.00 0.00 0.86
140 141 9.436957 ACAATATCTTTTACGAGGCCTTATATG 57.563 33.333 6.77 0.00 0.00 1.78
141 142 9.436957 CAATATCTTTTACGAGGCCTTATATGT 57.563 33.333 6.77 3.64 0.00 2.29
142 143 9.436957 AATATCTTTTACGAGGCCTTATATGTG 57.563 33.333 6.77 0.00 0.00 3.21
143 144 6.229936 TCTTTTACGAGGCCTTATATGTGT 57.770 37.500 6.77 0.00 0.00 3.72
144 145 6.046593 TCTTTTACGAGGCCTTATATGTGTG 58.953 40.000 6.77 0.00 0.00 3.82
145 146 5.347620 TTTACGAGGCCTTATATGTGTGT 57.652 39.130 6.77 0.00 0.00 3.72
146 147 3.906720 ACGAGGCCTTATATGTGTGTT 57.093 42.857 6.77 0.00 0.00 3.32
147 148 6.468333 TTACGAGGCCTTATATGTGTGTTA 57.532 37.500 6.77 0.00 0.00 2.41
148 149 4.945246 ACGAGGCCTTATATGTGTGTTAG 58.055 43.478 6.77 0.00 0.00 2.34
149 150 3.741344 CGAGGCCTTATATGTGTGTTAGC 59.259 47.826 6.77 0.00 0.00 3.09
150 151 4.501571 CGAGGCCTTATATGTGTGTTAGCT 60.502 45.833 6.77 0.00 0.00 3.32
151 152 5.368989 GAGGCCTTATATGTGTGTTAGCTT 58.631 41.667 6.77 0.00 0.00 3.74
152 153 5.755849 AGGCCTTATATGTGTGTTAGCTTT 58.244 37.500 0.00 0.00 0.00 3.51
153 154 6.187682 AGGCCTTATATGTGTGTTAGCTTTT 58.812 36.000 0.00 0.00 0.00 2.27
154 155 7.343357 AGGCCTTATATGTGTGTTAGCTTTTA 58.657 34.615 0.00 0.00 0.00 1.52
155 156 7.832187 AGGCCTTATATGTGTGTTAGCTTTTAA 59.168 33.333 0.00 0.00 0.00 1.52
156 157 7.913821 GGCCTTATATGTGTGTTAGCTTTTAAC 59.086 37.037 0.00 0.00 0.00 2.01
157 158 8.674607 GCCTTATATGTGTGTTAGCTTTTAACT 58.325 33.333 0.00 0.00 0.00 2.24
165 166 8.073768 TGTGTGTTAGCTTTTAACTATCTTTGC 58.926 33.333 0.00 0.00 0.00 3.68
166 167 8.290325 GTGTGTTAGCTTTTAACTATCTTTGCT 58.710 33.333 0.00 0.00 0.00 3.91
167 168 8.504005 TGTGTTAGCTTTTAACTATCTTTGCTC 58.496 33.333 0.00 0.00 0.00 4.26
168 169 8.722394 GTGTTAGCTTTTAACTATCTTTGCTCT 58.278 33.333 0.00 0.00 0.00 4.09
169 170 8.721478 TGTTAGCTTTTAACTATCTTTGCTCTG 58.279 33.333 0.00 0.00 0.00 3.35
170 171 8.722394 GTTAGCTTTTAACTATCTTTGCTCTGT 58.278 33.333 0.00 0.00 0.00 3.41
171 172 7.751768 AGCTTTTAACTATCTTTGCTCTGTT 57.248 32.000 0.00 0.00 0.00 3.16
172 173 8.171164 AGCTTTTAACTATCTTTGCTCTGTTT 57.829 30.769 0.00 0.00 0.00 2.83
173 174 8.633561 AGCTTTTAACTATCTTTGCTCTGTTTT 58.366 29.630 0.00 0.00 0.00 2.43
174 175 9.249457 GCTTTTAACTATCTTTGCTCTGTTTTT 57.751 29.630 0.00 0.00 0.00 1.94
210 211 9.585099 TCTGTGCCATTCAAATAAAATATTCAC 57.415 29.630 0.00 0.00 0.00 3.18
211 212 8.404889 TGTGCCATTCAAATAAAATATTCACG 57.595 30.769 0.00 0.00 0.00 4.35
212 213 8.031864 TGTGCCATTCAAATAAAATATTCACGT 58.968 29.630 0.00 0.00 0.00 4.49
213 214 8.320295 GTGCCATTCAAATAAAATATTCACGTG 58.680 33.333 9.94 9.94 0.00 4.49
214 215 8.031864 TGCCATTCAAATAAAATATTCACGTGT 58.968 29.630 16.51 0.00 0.00 4.49
215 216 8.868916 GCCATTCAAATAAAATATTCACGTGTT 58.131 29.630 16.51 7.21 0.00 3.32
226 227 9.528018 AAAATATTCACGTGTTTCAGAAAATGT 57.472 25.926 16.51 0.72 0.00 2.71
227 228 9.528018 AAATATTCACGTGTTTCAGAAAATGTT 57.472 25.926 16.51 6.94 0.00 2.71
228 229 8.728088 ATATTCACGTGTTTCAGAAAATGTTC 57.272 30.769 16.51 0.00 0.00 3.18
229 230 5.553290 TCACGTGTTTCAGAAAATGTTCA 57.447 34.783 16.51 0.00 36.09 3.18
230 231 6.130298 TCACGTGTTTCAGAAAATGTTCAT 57.870 33.333 16.51 0.00 36.09 2.57
231 232 6.198687 TCACGTGTTTCAGAAAATGTTCATC 58.801 36.000 16.51 0.00 36.09 2.92
232 233 5.970612 CACGTGTTTCAGAAAATGTTCATCA 59.029 36.000 7.58 0.00 36.09 3.07
233 234 6.638063 CACGTGTTTCAGAAAATGTTCATCAT 59.362 34.615 7.58 0.00 36.09 2.45
234 235 7.802720 CACGTGTTTCAGAAAATGTTCATCATA 59.197 33.333 7.58 0.00 36.09 2.15
235 236 8.514594 ACGTGTTTCAGAAAATGTTCATCATAT 58.485 29.630 0.00 0.00 36.09 1.78
236 237 9.345517 CGTGTTTCAGAAAATGTTCATCATATT 57.654 29.630 0.00 0.00 36.09 1.28
302 303 7.546250 TTTTAAGAAAAGCCATACCATTCCA 57.454 32.000 0.00 0.00 0.00 3.53
303 304 7.546250 TTTAAGAAAAGCCATACCATTCCAA 57.454 32.000 0.00 0.00 0.00 3.53
304 305 7.546250 TTAAGAAAAGCCATACCATTCCAAA 57.454 32.000 0.00 0.00 0.00 3.28
305 306 6.432403 AAGAAAAGCCATACCATTCCAAAA 57.568 33.333 0.00 0.00 0.00 2.44
306 307 6.041423 AGAAAAGCCATACCATTCCAAAAG 57.959 37.500 0.00 0.00 0.00 2.27
307 308 5.543790 AGAAAAGCCATACCATTCCAAAAGT 59.456 36.000 0.00 0.00 0.00 2.66
308 309 4.806640 AAGCCATACCATTCCAAAAGTG 57.193 40.909 0.00 0.00 0.00 3.16
309 310 3.778265 AGCCATACCATTCCAAAAGTGT 58.222 40.909 0.00 0.00 0.00 3.55
310 311 4.159557 AGCCATACCATTCCAAAAGTGTT 58.840 39.130 0.00 0.00 0.00 3.32
311 312 4.220602 AGCCATACCATTCCAAAAGTGTTC 59.779 41.667 0.00 0.00 0.00 3.18
312 313 4.021544 GCCATACCATTCCAAAAGTGTTCA 60.022 41.667 0.00 0.00 0.00 3.18
313 314 5.510520 GCCATACCATTCCAAAAGTGTTCAA 60.511 40.000 0.00 0.00 0.00 2.69
314 315 5.925969 CCATACCATTCCAAAAGTGTTCAAC 59.074 40.000 0.00 0.00 0.00 3.18
315 316 4.040445 ACCATTCCAAAAGTGTTCAACG 57.960 40.909 0.00 0.00 0.00 4.10
316 317 3.445805 ACCATTCCAAAAGTGTTCAACGT 59.554 39.130 0.00 0.00 0.00 3.99
317 318 4.081917 ACCATTCCAAAAGTGTTCAACGTT 60.082 37.500 0.00 0.00 31.20 3.99
318 319 4.867608 CCATTCCAAAAGTGTTCAACGTTT 59.132 37.500 0.00 0.00 40.53 3.60
319 320 6.037098 CCATTCCAAAAGTGTTCAACGTTTA 58.963 36.000 0.00 0.00 38.24 2.01
320 321 6.020201 CCATTCCAAAAGTGTTCAACGTTTAC 60.020 38.462 0.00 0.13 38.24 2.01
321 322 5.883503 TCCAAAAGTGTTCAACGTTTACT 57.116 34.783 0.00 0.00 38.24 2.24
322 323 6.981762 TCCAAAAGTGTTCAACGTTTACTA 57.018 33.333 0.00 0.00 38.24 1.82
323 324 7.375106 TCCAAAAGTGTTCAACGTTTACTAA 57.625 32.000 0.00 0.00 38.24 2.24
324 325 7.814642 TCCAAAAGTGTTCAACGTTTACTAAA 58.185 30.769 0.00 0.00 38.24 1.85
325 326 7.964011 TCCAAAAGTGTTCAACGTTTACTAAAG 59.036 33.333 0.00 0.00 38.24 1.85
326 327 7.964011 CCAAAAGTGTTCAACGTTTACTAAAGA 59.036 33.333 0.00 0.00 38.24 2.52
327 328 9.332301 CAAAAGTGTTCAACGTTTACTAAAGAA 57.668 29.630 0.00 0.00 38.24 2.52
328 329 9.896263 AAAAGTGTTCAACGTTTACTAAAGAAA 57.104 25.926 0.00 0.00 38.49 2.52
329 330 8.885302 AAGTGTTCAACGTTTACTAAAGAAAC 57.115 30.769 0.00 0.00 34.16 2.78
330 331 8.031848 AGTGTTCAACGTTTACTAAAGAAACA 57.968 30.769 0.00 0.00 36.74 2.83
331 332 8.671028 AGTGTTCAACGTTTACTAAAGAAACAT 58.329 29.630 0.00 0.00 36.74 2.71
332 333 8.730427 GTGTTCAACGTTTACTAAAGAAACATG 58.270 33.333 0.00 0.00 36.74 3.21
333 334 8.452534 TGTTCAACGTTTACTAAAGAAACATGT 58.547 29.630 0.00 0.00 36.74 3.21
334 335 9.919348 GTTCAACGTTTACTAAAGAAACATGTA 57.081 29.630 0.00 0.00 36.74 2.29
401 402 1.332375 TGCACACGGAAAAAGTACAGC 59.668 47.619 0.00 0.00 0.00 4.40
462 466 8.475331 AGAACAAATTACGACTTACATACCAG 57.525 34.615 0.00 0.00 0.00 4.00
463 467 8.092687 AGAACAAATTACGACTTACATACCAGT 58.907 33.333 0.00 0.00 0.00 4.00
464 468 9.357652 GAACAAATTACGACTTACATACCAGTA 57.642 33.333 0.00 0.00 0.00 2.74
466 470 9.309516 ACAAATTACGACTTACATACCAGTATG 57.690 33.333 14.76 14.76 46.24 2.39
467 471 7.941795 AATTACGACTTACATACCAGTATGC 57.058 36.000 15.99 1.15 45.06 3.14
469 473 5.184340 ACGACTTACATACCAGTATGCTC 57.816 43.478 15.99 6.53 45.06 4.26
470 474 4.888239 ACGACTTACATACCAGTATGCTCT 59.112 41.667 15.99 2.01 45.06 4.09
471 475 6.060136 ACGACTTACATACCAGTATGCTCTA 58.940 40.000 15.99 1.15 45.06 2.43
472 476 6.017275 ACGACTTACATACCAGTATGCTCTAC 60.017 42.308 15.99 6.36 45.06 2.59
473 477 6.017357 CGACTTACATACCAGTATGCTCTACA 60.017 42.308 15.99 0.00 45.06 2.74
474 478 7.308649 CGACTTACATACCAGTATGCTCTACAT 60.309 40.741 15.99 0.12 45.06 2.29
475 479 8.935614 ACTTACATACCAGTATGCTCTACATA 57.064 34.615 15.99 0.00 45.06 2.29
486 490 2.159156 TGCTCTACATACGCGAACCAAT 60.159 45.455 15.93 0.00 0.00 3.16
490 494 2.380084 ACATACGCGAACCAATCTGT 57.620 45.000 15.93 0.00 0.00 3.41
491 495 3.513680 ACATACGCGAACCAATCTGTA 57.486 42.857 15.93 0.00 0.00 2.74
492 496 3.444916 ACATACGCGAACCAATCTGTAG 58.555 45.455 15.93 0.00 0.00 2.74
527 531 1.413227 GGACAGTGGTATCCCTAGCCT 60.413 57.143 0.00 0.00 0.00 4.58
531 535 1.864251 AGTGGTATCCCTAGCCTACCA 59.136 52.381 10.57 10.57 41.93 3.25
532 536 2.158295 AGTGGTATCCCTAGCCTACCAG 60.158 54.545 13.55 0.00 44.11 4.00
564 568 1.209261 TGGTGCTCGCATTATTCCTGA 59.791 47.619 0.00 0.00 0.00 3.86
609 613 2.093288 TGCGCTTTCAATCAGAGGAGAT 60.093 45.455 9.73 0.00 0.00 2.75
623 627 0.245539 GGAGATGTTCCCGTCAACGA 59.754 55.000 3.71 0.00 40.37 3.85
624 628 1.347320 GAGATGTTCCCGTCAACGAC 58.653 55.000 3.71 0.00 43.02 4.34
633 637 4.719369 GTCAACGACGAGGCGCCT 62.719 66.667 33.48 33.48 33.86 5.52
634 638 3.057548 TCAACGACGAGGCGCCTA 61.058 61.111 32.97 8.37 33.86 3.93
635 639 2.879462 CAACGACGAGGCGCCTAC 60.879 66.667 32.97 22.05 33.86 3.18
636 640 4.471726 AACGACGAGGCGCCTACG 62.472 66.667 32.91 32.91 44.07 3.51
668 672 3.548745 AATCTCAAGATGACATGCCGA 57.451 42.857 0.00 0.00 34.49 5.54
680 684 0.813821 CATGCCGACTCAGTCTCTCA 59.186 55.000 2.61 0.00 0.00 3.27
681 685 1.203287 CATGCCGACTCAGTCTCTCAA 59.797 52.381 2.61 0.00 0.00 3.02
683 687 1.895798 TGCCGACTCAGTCTCTCAAAT 59.104 47.619 2.61 0.00 0.00 2.32
695 699 4.125703 GTCTCTCAAATGTGCTCATAGGG 58.874 47.826 0.93 0.00 33.49 3.53
696 700 4.033009 TCTCTCAAATGTGCTCATAGGGA 58.967 43.478 0.93 2.99 33.49 4.20
701 705 4.907269 TCAAATGTGCTCATAGGGATAGGA 59.093 41.667 0.93 0.00 33.49 2.94
703 707 5.432680 AATGTGCTCATAGGGATAGGATG 57.567 43.478 0.93 0.00 33.49 3.51
706 710 2.568956 TGCTCATAGGGATAGGATGTGC 59.431 50.000 0.00 0.00 33.82 4.57
707 711 2.568956 GCTCATAGGGATAGGATGTGCA 59.431 50.000 0.00 0.00 33.54 4.57
711 715 5.341169 TCATAGGGATAGGATGTGCATGTA 58.659 41.667 0.00 0.00 0.00 2.29
728 733 3.897141 TGTATGCGTTCATAGGGTGAA 57.103 42.857 0.00 0.00 44.36 3.18
737 742 2.766313 TCATAGGGTGAATGTATGCGC 58.234 47.619 0.00 0.00 32.78 6.09
744 749 3.054166 GGTGAATGTATGCGCGTATGTA 58.946 45.455 20.45 8.73 0.00 2.29
754 759 1.681825 CGCGTATGTATGAGCGCTTA 58.318 50.000 13.26 8.30 46.56 3.09
760 765 4.376717 CGTATGTATGAGCGCTTACGTCTA 60.377 45.833 22.50 9.31 42.83 2.59
761 766 4.768130 ATGTATGAGCGCTTACGTCTAT 57.232 40.909 13.26 0.00 42.83 1.98
762 767 5.874895 ATGTATGAGCGCTTACGTCTATA 57.125 39.130 13.26 0.00 42.83 1.31
820 840 3.500680 TGGAAGACGTTTCTAATTGGTGC 59.499 43.478 0.00 0.00 0.00 5.01
848 868 0.253044 GTGGTTAGCTCATCCTGCCA 59.747 55.000 0.00 0.00 0.00 4.92
870 890 2.295629 TCGTGGACATGTACGTAACCAA 59.704 45.455 18.04 0.00 40.87 3.67
903 923 2.053811 CGACGCGCACGAAACAAA 60.054 55.556 18.74 0.00 43.93 2.83
935 955 2.315176 CCTCCACCTCCATCTACTCTG 58.685 57.143 0.00 0.00 0.00 3.35
936 956 2.091610 CCTCCACCTCCATCTACTCTGA 60.092 54.545 0.00 0.00 0.00 3.27
937 957 3.221771 CTCCACCTCCATCTACTCTGAG 58.778 54.545 2.45 2.45 0.00 3.35
939 959 2.091610 CCACCTCCATCTACTCTGAGGA 60.092 54.545 9.85 0.00 45.93 3.71
952 973 0.249868 CTGAGGAAGTCACGCCACAA 60.250 55.000 0.00 0.00 0.00 3.33
973 995 1.296392 CCCAAGGCGACACTGATCA 59.704 57.895 0.00 0.00 0.00 2.92
980 1002 2.159043 AGGCGACACTGATCAATCGATT 60.159 45.455 21.52 4.39 36.70 3.34
986 1008 1.863454 ACTGATCAATCGATTCAGCGC 59.137 47.619 20.48 0.00 33.56 5.92
987 1009 1.194098 CTGATCAATCGATTCAGCGCC 59.806 52.381 7.92 0.00 29.66 6.53
988 1010 1.202568 TGATCAATCGATTCAGCGCCT 60.203 47.619 7.92 0.00 29.66 5.52
989 1011 2.035832 TGATCAATCGATTCAGCGCCTA 59.964 45.455 7.92 0.00 29.66 3.93
990 1012 2.140065 TCAATCGATTCAGCGCCTAG 57.860 50.000 7.92 0.00 0.00 3.02
1125 1156 1.979693 GTCCTCCTCGCTGGACTGT 60.980 63.158 5.05 0.00 46.65 3.55
1127 1158 1.979155 CCTCCTCGCTGGACTGTGA 60.979 63.158 0.00 0.00 40.56 3.58
1404 1435 2.612221 GGTCACCTACTGCAACAGGTAC 60.612 54.545 16.47 14.16 43.45 3.34
1406 1437 2.701423 TCACCTACTGCAACAGGTACAA 59.299 45.455 16.47 5.29 43.45 2.41
1461 1500 2.994578 CACTCACTCACAAGCAGATGAG 59.005 50.000 8.98 8.98 46.49 2.90
1572 1612 1.340889 GACAGTTTCAAGGGCATGCAA 59.659 47.619 21.36 0.99 0.00 4.08
1615 1655 8.919661 GTTCTCAATTTTGTTCTTCATCAATCC 58.080 33.333 0.00 0.00 0.00 3.01
1636 1676 5.063204 TCCTGTTAGTTTCATGGAACTGTG 58.937 41.667 26.79 14.12 39.99 3.66
1641 1681 6.039270 TGTTAGTTTCATGGAACTGTGGAAAG 59.961 38.462 26.79 0.00 39.99 2.62
1706 1746 3.589988 ACTTCTGAAATGTACTGCTCCG 58.410 45.455 0.00 0.00 0.00 4.63
1778 1818 6.338937 AGTAGATTTCTTGGTTGACGATACC 58.661 40.000 0.00 0.00 36.17 2.73
1811 1851 2.281484 CGTGTGGTGACTTGGGGG 60.281 66.667 0.00 0.00 0.00 5.40
1815 1855 2.933287 TGGTGACTTGGGGGCGAT 60.933 61.111 0.00 0.00 0.00 4.58
1818 1858 0.034863 GGTGACTTGGGGGCGATTAA 60.035 55.000 0.00 0.00 0.00 1.40
2086 2129 4.451900 GAACAGTCCCTTGAACTGAAGAA 58.548 43.478 10.04 0.00 45.64 2.52
2099 2142 1.536766 CTGAAGAACGAAAGCATGGCA 59.463 47.619 0.00 0.00 0.00 4.92
2109 2152 3.624861 CGAAAGCATGGCATCTCTACTTT 59.375 43.478 0.00 3.00 0.00 2.66
2178 2221 3.462021 AGCTAATCGTTGCCAGAGAATC 58.538 45.455 0.00 0.00 0.00 2.52
2179 2222 3.118629 AGCTAATCGTTGCCAGAGAATCA 60.119 43.478 0.00 0.00 37.82 2.57
2187 2230 2.485659 TGCCAGAGAATCAAGAGGGAT 58.514 47.619 0.00 0.00 37.82 3.85
2202 2246 4.889780 AGAGGGATGAGATTAGAACCACT 58.110 43.478 0.00 0.00 0.00 4.00
2210 2254 0.831307 ATTAGAACCACTCGGGGCTC 59.169 55.000 0.00 0.00 42.91 4.70
2255 2303 8.536175 GGATTAGCCTAGCTCTAATTAGTCAAT 58.464 37.037 12.19 0.91 40.44 2.57
2294 2342 6.737608 ACTAGAACTAGAAGAACTGGAGGAT 58.262 40.000 14.64 0.00 36.97 3.24
2295 2343 7.874252 ACTAGAACTAGAAGAACTGGAGGATA 58.126 38.462 14.64 0.00 36.97 2.59
2328 2379 5.398603 TGTATGTTACAAAAGGGCCAATG 57.601 39.130 6.18 3.74 35.38 2.82
2354 2409 6.071616 CCTCAAGTATATGTTAGAGGAGAGGC 60.072 46.154 0.00 0.00 44.12 4.70
2379 2437 1.151810 AGCCACCAAGGAGGGAAGA 60.152 57.895 4.72 0.00 43.89 2.87
2380 2438 0.772124 AGCCACCAAGGAGGGAAGAA 60.772 55.000 4.72 0.00 43.89 2.52
2382 2440 0.321653 CCACCAAGGAGGGAAGAACG 60.322 60.000 0.00 0.00 43.89 3.95
2384 2442 1.128188 ACCAAGGAGGGAAGAACGCT 61.128 55.000 0.00 0.00 43.89 5.07
2390 2448 2.759985 AGGGAAGAACGCTCCTTGA 58.240 52.632 0.00 0.00 37.17 3.02
2407 2465 4.365111 ATGCGCCAGCCAAGGGAA 62.365 61.111 4.18 0.00 44.33 3.97
2410 2468 2.747855 CGCCAGCCAAGGGAAGTC 60.748 66.667 0.00 0.00 0.00 3.01
2411 2469 2.361737 GCCAGCCAAGGGAAGTCC 60.362 66.667 0.00 0.00 0.00 3.85
2423 2481 1.205055 GGAAGTCCTCCCCAAGTAGG 58.795 60.000 0.00 0.00 38.44 3.18
2424 2482 1.273666 GGAAGTCCTCCCCAAGTAGGA 60.274 57.143 0.00 0.00 39.63 2.94
2427 2485 1.394963 TCCTCCCCAAGTAGGACCC 59.605 63.158 0.00 0.00 41.22 4.46
2428 2486 1.693103 CCTCCCCAAGTAGGACCCC 60.693 68.421 0.00 0.00 41.22 4.95
2429 2487 1.693103 CTCCCCAAGTAGGACCCCC 60.693 68.421 0.00 0.00 41.22 5.40
2446 2504 2.397815 CCCCCTCCACATGGAAAGA 58.602 57.895 1.50 0.00 44.91 2.52
2447 2505 0.704076 CCCCCTCCACATGGAAAGAA 59.296 55.000 1.50 0.00 44.91 2.52
2448 2506 1.616994 CCCCCTCCACATGGAAAGAAC 60.617 57.143 1.50 0.00 44.91 3.01
2449 2507 1.453155 CCCTCCACATGGAAAGAACG 58.547 55.000 1.50 0.00 44.91 3.95
2450 2508 0.804989 CCTCCACATGGAAAGAACGC 59.195 55.000 1.50 0.00 44.91 4.84
2451 2509 1.611673 CCTCCACATGGAAAGAACGCT 60.612 52.381 1.50 0.00 44.91 5.07
2452 2510 1.734465 CTCCACATGGAAAGAACGCTC 59.266 52.381 1.50 0.00 44.91 5.03
2453 2511 0.804989 CCACATGGAAAGAACGCTCC 59.195 55.000 0.00 0.00 37.39 4.70
2454 2512 1.611673 CCACATGGAAAGAACGCTCCT 60.612 52.381 0.00 0.00 37.39 3.69
2455 2513 2.154462 CACATGGAAAGAACGCTCCTT 58.846 47.619 0.00 0.00 32.51 3.36
2456 2514 2.095567 CACATGGAAAGAACGCTCCTTG 60.096 50.000 0.00 3.23 40.82 3.61
2457 2515 2.224523 ACATGGAAAGAACGCTCCTTGA 60.225 45.455 10.07 0.00 38.53 3.02
2458 2516 2.859165 TGGAAAGAACGCTCCTTGAT 57.141 45.000 0.00 0.00 32.51 2.57
2459 2517 2.426522 TGGAAAGAACGCTCCTTGATG 58.573 47.619 0.00 0.00 32.51 3.07
2460 2518 1.131315 GGAAAGAACGCTCCTTGATGC 59.869 52.381 0.00 0.00 0.00 3.91
2465 2523 3.570638 CGCTCCTTGATGCGCCAG 61.571 66.667 4.18 0.00 45.50 4.85
2466 2524 3.885521 GCTCCTTGATGCGCCAGC 61.886 66.667 4.18 0.00 45.41 4.85
2467 2525 3.207669 CTCCTTGATGCGCCAGCC 61.208 66.667 4.18 0.00 44.33 4.85
2468 2526 3.982316 CTCCTTGATGCGCCAGCCA 62.982 63.158 4.18 0.00 44.33 4.75
2469 2527 3.063704 CCTTGATGCGCCAGCCAA 61.064 61.111 4.18 2.75 44.33 4.52
2470 2528 2.488355 CTTGATGCGCCAGCCAAG 59.512 61.111 4.18 9.23 44.33 3.61
2471 2529 3.060020 CTTGATGCGCCAGCCAAGG 62.060 63.158 4.18 0.00 44.33 3.61
2473 2531 4.802051 GATGCGCCAGCCAAGGGA 62.802 66.667 4.18 0.00 44.33 4.20
2474 2532 4.365111 ATGCGCCAGCCAAGGGAA 62.365 61.111 4.18 0.00 44.33 3.97
2477 2535 2.747855 CGCCAGCCAAGGGAAGTC 60.748 66.667 0.00 0.00 0.00 3.01
2478 2536 2.361737 GCCAGCCAAGGGAAGTCC 60.362 66.667 0.00 0.00 0.00 3.85
2490 2548 1.205055 GGAAGTCCTCCCCAAGTAGG 58.795 60.000 0.00 0.00 38.44 3.18
2491 2549 1.273666 GGAAGTCCTCCCCAAGTAGGA 60.274 57.143 0.00 0.00 39.63 2.94
2494 2552 1.394963 TCCTCCCCAAGTAGGACCC 59.605 63.158 0.00 0.00 41.22 4.46
2495 2553 1.693103 CCTCCCCAAGTAGGACCCC 60.693 68.421 0.00 0.00 41.22 4.95
2496 2554 1.693103 CTCCCCAAGTAGGACCCCC 60.693 68.421 0.00 0.00 41.22 5.40
2512 2570 1.307647 CCCCCTCCACATGGAAAGG 59.692 63.158 1.50 5.93 44.91 3.11
2513 2571 1.307647 CCCCTCCACATGGAAAGGG 59.692 63.158 17.39 17.39 45.87 3.95
2514 2572 1.307647 CCCTCCACATGGAAAGGGG 59.692 63.158 14.88 11.98 42.87 4.79
2515 2573 1.214305 CCCTCCACATGGAAAGGGGA 61.214 60.000 15.69 4.98 45.42 4.81
2516 2574 0.257039 CCTCCACATGGAAAGGGGAG 59.743 60.000 4.51 4.51 44.91 4.30
2517 2575 0.394899 CTCCACATGGAAAGGGGAGC 60.395 60.000 1.50 0.00 44.91 4.70
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.123804 CGTTTAGAGCATGTTATCGGCT 58.876 45.455 0.00 0.00 41.35 5.52
2 3 2.221055 GCCGTTTAGAGCATGTTATCGG 59.779 50.000 0.00 0.00 38.67 4.18
3 4 2.863740 TGCCGTTTAGAGCATGTTATCG 59.136 45.455 0.00 0.00 33.08 2.92
4 5 3.871594 AGTGCCGTTTAGAGCATGTTATC 59.128 43.478 0.00 0.00 41.86 1.75
6 7 3.000041 CAGTGCCGTTTAGAGCATGTTA 59.000 45.455 0.00 0.00 41.86 2.41
7 8 1.806542 CAGTGCCGTTTAGAGCATGTT 59.193 47.619 0.00 0.00 41.86 2.71
8 9 1.001974 TCAGTGCCGTTTAGAGCATGT 59.998 47.619 0.00 0.00 41.86 3.21
9 10 1.725641 TCAGTGCCGTTTAGAGCATG 58.274 50.000 0.00 0.00 41.86 4.06
10 11 2.283298 CATCAGTGCCGTTTAGAGCAT 58.717 47.619 0.00 0.00 41.86 3.79
11 12 1.725641 CATCAGTGCCGTTTAGAGCA 58.274 50.000 0.00 0.00 36.44 4.26
12 13 0.375106 GCATCAGTGCCGTTTAGAGC 59.625 55.000 0.00 0.00 45.76 4.09
23 24 3.185188 GCCGATAACATGTAGCATCAGTG 59.815 47.826 0.00 0.00 0.00 3.66
24 25 3.070159 AGCCGATAACATGTAGCATCAGT 59.930 43.478 0.00 0.00 0.00 3.41
25 26 3.431233 CAGCCGATAACATGTAGCATCAG 59.569 47.826 0.00 0.00 0.00 2.90
26 27 3.069443 TCAGCCGATAACATGTAGCATCA 59.931 43.478 0.00 0.00 0.00 3.07
27 28 3.430218 GTCAGCCGATAACATGTAGCATC 59.570 47.826 0.00 1.89 0.00 3.91
28 29 3.393800 GTCAGCCGATAACATGTAGCAT 58.606 45.455 0.00 0.00 0.00 3.79
29 30 2.798145 CGTCAGCCGATAACATGTAGCA 60.798 50.000 0.00 0.00 39.56 3.49
30 31 1.787155 CGTCAGCCGATAACATGTAGC 59.213 52.381 0.00 0.00 39.56 3.58
31 32 1.787155 GCGTCAGCCGATAACATGTAG 59.213 52.381 0.00 0.00 39.56 2.74
32 33 1.847818 GCGTCAGCCGATAACATGTA 58.152 50.000 0.00 0.00 39.56 2.29
33 34 1.145759 CGCGTCAGCCGATAACATGT 61.146 55.000 0.00 0.00 41.18 3.21
34 35 0.869880 TCGCGTCAGCCGATAACATG 60.870 55.000 5.77 0.00 41.18 3.21
35 36 0.595053 CTCGCGTCAGCCGATAACAT 60.595 55.000 5.77 0.00 41.18 2.71
36 37 1.226575 CTCGCGTCAGCCGATAACA 60.227 57.895 5.77 0.00 41.18 2.41
37 38 2.577785 GCTCGCGTCAGCCGATAAC 61.578 63.158 5.77 0.00 41.18 1.89
38 39 2.278596 GCTCGCGTCAGCCGATAA 60.279 61.111 5.77 0.00 41.18 1.75
39 40 4.607606 CGCTCGCGTCAGCCGATA 62.608 66.667 13.49 0.00 41.18 2.92
56 57 4.554163 ACGCGAGTTGTAGCACTC 57.446 55.556 15.93 0.00 46.40 3.51
67 68 1.014044 TGCCTTTTAGCTGACGCGAG 61.014 55.000 15.93 0.36 42.32 5.03
68 69 1.005512 TGCCTTTTAGCTGACGCGA 60.006 52.632 15.93 0.00 42.32 5.87
69 70 1.132640 GTGCCTTTTAGCTGACGCG 59.867 57.895 3.53 3.53 42.32 6.01
70 71 0.875059 AAGTGCCTTTTAGCTGACGC 59.125 50.000 0.00 0.00 0.00 5.19
71 72 2.673368 CCTAAGTGCCTTTTAGCTGACG 59.327 50.000 0.00 0.00 0.00 4.35
72 73 3.676093 ACCTAAGTGCCTTTTAGCTGAC 58.324 45.455 0.00 0.00 0.00 3.51
73 74 3.326588 TGACCTAAGTGCCTTTTAGCTGA 59.673 43.478 0.00 0.00 0.00 4.26
74 75 3.437049 GTGACCTAAGTGCCTTTTAGCTG 59.563 47.826 0.00 0.00 0.00 4.24
75 76 3.072476 TGTGACCTAAGTGCCTTTTAGCT 59.928 43.478 0.00 0.00 0.00 3.32
76 77 3.408634 TGTGACCTAAGTGCCTTTTAGC 58.591 45.455 0.00 0.00 0.00 3.09
77 78 5.003804 ACATGTGACCTAAGTGCCTTTTAG 58.996 41.667 0.00 0.00 0.00 1.85
78 79 4.759693 CACATGTGACCTAAGTGCCTTTTA 59.240 41.667 21.64 0.00 0.00 1.52
79 80 3.569701 CACATGTGACCTAAGTGCCTTTT 59.430 43.478 21.64 0.00 0.00 2.27
80 81 3.149196 CACATGTGACCTAAGTGCCTTT 58.851 45.455 21.64 0.00 0.00 3.11
81 82 2.106511 ACACATGTGACCTAAGTGCCTT 59.893 45.455 31.94 1.65 33.69 4.35
82 83 1.699634 ACACATGTGACCTAAGTGCCT 59.300 47.619 31.94 1.87 33.69 4.75
83 84 2.185004 ACACATGTGACCTAAGTGCC 57.815 50.000 31.94 0.00 33.69 5.01
84 85 3.138304 TCAACACATGTGACCTAAGTGC 58.862 45.455 31.94 0.00 33.69 4.40
85 86 4.380531 ACTCAACACATGTGACCTAAGTG 58.619 43.478 31.94 15.80 36.34 3.16
86 87 4.689612 ACTCAACACATGTGACCTAAGT 57.310 40.909 31.94 21.10 0.00 2.24
87 88 5.178252 CAGAACTCAACACATGTGACCTAAG 59.822 44.000 31.94 20.53 0.00 2.18
88 89 5.056480 CAGAACTCAACACATGTGACCTAA 58.944 41.667 31.94 11.13 0.00 2.69
89 90 4.503123 CCAGAACTCAACACATGTGACCTA 60.503 45.833 31.94 12.79 0.00 3.08
90 91 3.470709 CAGAACTCAACACATGTGACCT 58.529 45.455 31.94 12.87 0.00 3.85
91 92 2.549754 CCAGAACTCAACACATGTGACC 59.450 50.000 31.94 11.62 0.00 4.02
92 93 2.031682 GCCAGAACTCAACACATGTGAC 60.032 50.000 31.94 12.74 0.00 3.67
93 94 2.221169 GCCAGAACTCAACACATGTGA 58.779 47.619 31.94 9.23 0.00 3.58
94 95 1.948834 TGCCAGAACTCAACACATGTG 59.051 47.619 24.25 24.25 0.00 3.21
95 96 1.949525 GTGCCAGAACTCAACACATGT 59.050 47.619 0.00 0.00 0.00 3.21
96 97 1.948834 TGTGCCAGAACTCAACACATG 59.051 47.619 0.00 0.00 36.39 3.21
97 98 2.346766 TGTGCCAGAACTCAACACAT 57.653 45.000 0.00 0.00 36.39 3.21
98 99 2.121291 TTGTGCCAGAACTCAACACA 57.879 45.000 0.00 0.00 39.35 3.72
99 100 4.697352 AGATATTGTGCCAGAACTCAACAC 59.303 41.667 0.00 0.00 0.00 3.32
100 101 4.910195 AGATATTGTGCCAGAACTCAACA 58.090 39.130 0.00 0.00 0.00 3.33
101 102 5.886960 AAGATATTGTGCCAGAACTCAAC 57.113 39.130 0.00 0.00 0.00 3.18
102 103 6.899393 AAAAGATATTGTGCCAGAACTCAA 57.101 33.333 0.00 0.00 0.00 3.02
103 104 6.092122 CGTAAAAGATATTGTGCCAGAACTCA 59.908 38.462 0.00 0.00 0.00 3.41
104 105 6.312918 TCGTAAAAGATATTGTGCCAGAACTC 59.687 38.462 0.00 0.00 0.00 3.01
105 106 6.170506 TCGTAAAAGATATTGTGCCAGAACT 58.829 36.000 0.00 0.00 0.00 3.01
106 107 6.417191 TCGTAAAAGATATTGTGCCAGAAC 57.583 37.500 0.00 0.00 0.00 3.01
107 108 5.584649 CCTCGTAAAAGATATTGTGCCAGAA 59.415 40.000 0.00 0.00 0.00 3.02
108 109 5.116180 CCTCGTAAAAGATATTGTGCCAGA 58.884 41.667 0.00 0.00 0.00 3.86
109 110 4.260784 GCCTCGTAAAAGATATTGTGCCAG 60.261 45.833 0.00 0.00 0.00 4.85
110 111 3.625764 GCCTCGTAAAAGATATTGTGCCA 59.374 43.478 0.00 0.00 0.00 4.92
111 112 3.003378 GGCCTCGTAAAAGATATTGTGCC 59.997 47.826 0.00 0.00 0.00 5.01
112 113 3.877508 AGGCCTCGTAAAAGATATTGTGC 59.122 43.478 0.00 0.00 0.00 4.57
113 114 7.730364 ATAAGGCCTCGTAAAAGATATTGTG 57.270 36.000 5.23 0.00 0.00 3.33
114 115 9.436957 CATATAAGGCCTCGTAAAAGATATTGT 57.563 33.333 5.23 0.00 0.00 2.71
115 116 9.436957 ACATATAAGGCCTCGTAAAAGATATTG 57.563 33.333 5.23 1.57 0.00 1.90
116 117 9.436957 CACATATAAGGCCTCGTAAAAGATATT 57.563 33.333 5.23 0.00 0.00 1.28
117 118 8.594550 ACACATATAAGGCCTCGTAAAAGATAT 58.405 33.333 5.23 0.00 0.00 1.63
118 119 7.870954 CACACATATAAGGCCTCGTAAAAGATA 59.129 37.037 5.23 0.00 0.00 1.98
119 120 6.706270 CACACATATAAGGCCTCGTAAAAGAT 59.294 38.462 5.23 0.00 0.00 2.40
120 121 6.046593 CACACATATAAGGCCTCGTAAAAGA 58.953 40.000 5.23 0.00 0.00 2.52
121 122 5.815740 ACACACATATAAGGCCTCGTAAAAG 59.184 40.000 5.23 0.00 0.00 2.27
122 123 5.736813 ACACACATATAAGGCCTCGTAAAA 58.263 37.500 5.23 0.00 0.00 1.52
123 124 5.347620 ACACACATATAAGGCCTCGTAAA 57.652 39.130 5.23 0.00 0.00 2.01
124 125 5.347620 AACACACATATAAGGCCTCGTAA 57.652 39.130 5.23 0.00 0.00 3.18
125 126 5.508489 GCTAACACACATATAAGGCCTCGTA 60.508 44.000 5.23 1.97 0.00 3.43
126 127 3.906720 AACACACATATAAGGCCTCGT 57.093 42.857 5.23 0.00 0.00 4.18
127 128 3.741344 GCTAACACACATATAAGGCCTCG 59.259 47.826 5.23 0.00 0.00 4.63
128 129 4.962155 AGCTAACACACATATAAGGCCTC 58.038 43.478 5.23 0.00 0.00 4.70
129 130 5.373812 AAGCTAACACACATATAAGGCCT 57.626 39.130 0.00 0.00 0.00 5.19
130 131 6.451064 AAAAGCTAACACACATATAAGGCC 57.549 37.500 0.00 0.00 0.00 5.19
131 132 8.674607 AGTTAAAAGCTAACACACATATAAGGC 58.325 33.333 0.93 0.00 0.00 4.35
139 140 8.073768 GCAAAGATAGTTAAAAGCTAACACACA 58.926 33.333 0.93 0.00 0.00 3.72
140 141 8.290325 AGCAAAGATAGTTAAAAGCTAACACAC 58.710 33.333 0.93 0.00 0.00 3.82
141 142 8.391075 AGCAAAGATAGTTAAAAGCTAACACA 57.609 30.769 0.93 0.00 0.00 3.72
142 143 8.722394 AGAGCAAAGATAGTTAAAAGCTAACAC 58.278 33.333 0.93 0.00 0.00 3.32
143 144 8.721478 CAGAGCAAAGATAGTTAAAAGCTAACA 58.279 33.333 0.93 0.00 0.00 2.41
144 145 8.722394 ACAGAGCAAAGATAGTTAAAAGCTAAC 58.278 33.333 0.00 0.00 0.00 2.34
145 146 8.848474 ACAGAGCAAAGATAGTTAAAAGCTAA 57.152 30.769 0.00 0.00 0.00 3.09
146 147 8.848474 AACAGAGCAAAGATAGTTAAAAGCTA 57.152 30.769 0.00 0.00 0.00 3.32
147 148 7.751768 AACAGAGCAAAGATAGTTAAAAGCT 57.248 32.000 0.00 0.00 0.00 3.74
148 149 8.803201 AAAACAGAGCAAAGATAGTTAAAAGC 57.197 30.769 0.00 0.00 0.00 3.51
187 188 8.320295 CACGTGAATATTTTATTTGAATGGCAC 58.680 33.333 10.90 0.00 0.00 5.01
188 189 8.031864 ACACGTGAATATTTTATTTGAATGGCA 58.968 29.630 25.01 0.00 0.00 4.92
189 190 8.406172 ACACGTGAATATTTTATTTGAATGGC 57.594 30.769 25.01 0.00 0.00 4.40
200 201 9.528018 ACATTTTCTGAAACACGTGAATATTTT 57.472 25.926 25.01 11.84 0.00 1.82
201 202 9.528018 AACATTTTCTGAAACACGTGAATATTT 57.472 25.926 25.01 12.25 0.00 1.40
202 203 9.180678 GAACATTTTCTGAAACACGTGAATATT 57.819 29.630 25.01 11.22 0.00 1.28
203 204 8.349245 TGAACATTTTCTGAAACACGTGAATAT 58.651 29.630 25.01 4.61 32.36 1.28
204 205 7.698628 TGAACATTTTCTGAAACACGTGAATA 58.301 30.769 25.01 4.50 32.36 1.75
205 206 6.559810 TGAACATTTTCTGAAACACGTGAAT 58.440 32.000 25.01 10.29 32.36 2.57
206 207 5.944013 TGAACATTTTCTGAAACACGTGAA 58.056 33.333 25.01 3.21 32.36 3.18
207 208 5.553290 TGAACATTTTCTGAAACACGTGA 57.447 34.783 25.01 0.00 32.36 4.35
208 209 5.970612 TGATGAACATTTTCTGAAACACGTG 59.029 36.000 15.48 15.48 32.36 4.49
209 210 6.130298 TGATGAACATTTTCTGAAACACGT 57.870 33.333 1.58 0.00 32.36 4.49
210 211 8.900511 ATATGATGAACATTTTCTGAAACACG 57.099 30.769 1.58 0.00 40.07 4.49
277 278 7.967908 TGGAATGGTATGGCTTTTCTTAAAAA 58.032 30.769 0.00 0.00 33.42 1.94
278 279 7.546250 TGGAATGGTATGGCTTTTCTTAAAA 57.454 32.000 0.00 0.00 0.00 1.52
279 280 7.546250 TTGGAATGGTATGGCTTTTCTTAAA 57.454 32.000 0.00 0.00 0.00 1.52
280 281 7.546250 TTTGGAATGGTATGGCTTTTCTTAA 57.454 32.000 0.00 0.00 0.00 1.85
281 282 7.234577 ACTTTTGGAATGGTATGGCTTTTCTTA 59.765 33.333 0.00 0.00 0.00 2.10
282 283 6.043127 ACTTTTGGAATGGTATGGCTTTTCTT 59.957 34.615 0.00 0.00 0.00 2.52
283 284 5.543790 ACTTTTGGAATGGTATGGCTTTTCT 59.456 36.000 0.00 0.00 0.00 2.52
284 285 5.639082 CACTTTTGGAATGGTATGGCTTTTC 59.361 40.000 0.00 0.00 0.00 2.29
285 286 5.071653 ACACTTTTGGAATGGTATGGCTTTT 59.928 36.000 0.00 0.00 0.00 2.27
286 287 4.592778 ACACTTTTGGAATGGTATGGCTTT 59.407 37.500 0.00 0.00 0.00 3.51
287 288 4.159557 ACACTTTTGGAATGGTATGGCTT 58.840 39.130 0.00 0.00 0.00 4.35
288 289 3.778265 ACACTTTTGGAATGGTATGGCT 58.222 40.909 0.00 0.00 0.00 4.75
289 290 4.021544 TGAACACTTTTGGAATGGTATGGC 60.022 41.667 0.00 0.00 0.00 4.40
290 291 5.720371 TGAACACTTTTGGAATGGTATGG 57.280 39.130 0.00 0.00 0.00 2.74
291 292 5.629020 CGTTGAACACTTTTGGAATGGTATG 59.371 40.000 0.00 0.00 0.00 2.39
292 293 5.300792 ACGTTGAACACTTTTGGAATGGTAT 59.699 36.000 0.00 0.00 0.00 2.73
293 294 4.641094 ACGTTGAACACTTTTGGAATGGTA 59.359 37.500 0.00 0.00 0.00 3.25
294 295 3.445805 ACGTTGAACACTTTTGGAATGGT 59.554 39.130 0.00 0.00 0.00 3.55
295 296 4.040445 ACGTTGAACACTTTTGGAATGG 57.960 40.909 0.00 0.00 0.00 3.16
296 297 6.750039 AGTAAACGTTGAACACTTTTGGAATG 59.250 34.615 0.00 0.00 29.93 2.67
297 298 6.859017 AGTAAACGTTGAACACTTTTGGAAT 58.141 32.000 0.00 0.00 29.93 3.01
298 299 6.256912 AGTAAACGTTGAACACTTTTGGAA 57.743 33.333 0.00 0.00 29.93 3.53
299 300 5.883503 AGTAAACGTTGAACACTTTTGGA 57.116 34.783 0.00 0.00 29.93 3.53
300 301 7.964011 TCTTTAGTAAACGTTGAACACTTTTGG 59.036 33.333 0.00 0.00 29.93 3.28
301 302 8.883789 TCTTTAGTAAACGTTGAACACTTTTG 57.116 30.769 0.00 0.00 29.93 2.44
302 303 9.896263 TTTCTTTAGTAAACGTTGAACACTTTT 57.104 25.926 0.00 0.00 31.96 2.27
303 304 9.333497 GTTTCTTTAGTAAACGTTGAACACTTT 57.667 29.630 0.00 0.00 0.00 2.66
304 305 8.505625 TGTTTCTTTAGTAAACGTTGAACACTT 58.494 29.630 0.00 0.00 39.23 3.16
305 306 8.031848 TGTTTCTTTAGTAAACGTTGAACACT 57.968 30.769 0.00 5.98 39.23 3.55
306 307 8.730427 CATGTTTCTTTAGTAAACGTTGAACAC 58.270 33.333 0.00 0.00 39.23 3.32
307 308 8.452534 ACATGTTTCTTTAGTAAACGTTGAACA 58.547 29.630 0.00 3.23 39.23 3.18
308 309 8.831000 ACATGTTTCTTTAGTAAACGTTGAAC 57.169 30.769 0.00 3.51 39.23 3.18
362 363 8.270111 CGTGTGCATACGTAATATATTTGAACA 58.730 33.333 25.65 3.74 39.13 3.18
363 364 7.738609 CCGTGTGCATACGTAATATATTTGAAC 59.261 37.037 30.06 1.08 42.24 3.18
377 378 2.961522 ACTTTTTCCGTGTGCATACG 57.038 45.000 26.79 26.79 43.35 3.06
388 389 5.600908 TCAATACACGCTGTACTTTTTCC 57.399 39.130 0.00 0.00 35.42 3.13
463 467 2.619646 TGGTTCGCGTATGTAGAGCATA 59.380 45.455 5.77 0.00 38.94 3.14
464 468 1.407618 TGGTTCGCGTATGTAGAGCAT 59.592 47.619 5.77 0.00 41.42 3.79
466 470 1.917273 TTGGTTCGCGTATGTAGAGC 58.083 50.000 5.77 0.00 0.00 4.09
467 471 3.731216 CAGATTGGTTCGCGTATGTAGAG 59.269 47.826 5.77 0.00 0.00 2.43
469 473 3.444916 ACAGATTGGTTCGCGTATGTAG 58.555 45.455 5.77 0.00 0.00 2.74
470 474 3.513680 ACAGATTGGTTCGCGTATGTA 57.486 42.857 5.77 0.00 0.00 2.29
471 475 2.380084 ACAGATTGGTTCGCGTATGT 57.620 45.000 5.77 0.00 0.00 2.29
472 476 3.444916 ACTACAGATTGGTTCGCGTATG 58.555 45.455 5.77 0.00 0.00 2.39
473 477 3.795623 ACTACAGATTGGTTCGCGTAT 57.204 42.857 5.77 0.00 0.00 3.06
474 478 3.247442 CAACTACAGATTGGTTCGCGTA 58.753 45.455 5.77 0.00 0.00 4.42
475 479 2.066262 CAACTACAGATTGGTTCGCGT 58.934 47.619 5.77 0.00 0.00 6.01
476 480 1.393539 CCAACTACAGATTGGTTCGCG 59.606 52.381 0.00 0.00 41.55 5.87
482 486 6.933521 CCTCTAATCATCCAACTACAGATTGG 59.066 42.308 0.00 0.00 46.86 3.16
486 490 5.598830 GTCCCTCTAATCATCCAACTACAGA 59.401 44.000 0.00 0.00 0.00 3.41
490 494 5.363868 CACTGTCCCTCTAATCATCCAACTA 59.636 44.000 0.00 0.00 0.00 2.24
491 495 4.163078 CACTGTCCCTCTAATCATCCAACT 59.837 45.833 0.00 0.00 0.00 3.16
492 496 4.446371 CACTGTCCCTCTAATCATCCAAC 58.554 47.826 0.00 0.00 0.00 3.77
522 526 2.185387 GACTTGAACCCTGGTAGGCTA 58.815 52.381 0.00 0.00 32.73 3.93
525 529 1.279271 CAGGACTTGAACCCTGGTAGG 59.721 57.143 0.00 0.00 44.68 3.18
531 535 1.062488 AGCACCAGGACTTGAACCCT 61.062 55.000 0.00 0.00 0.00 4.34
532 536 0.606673 GAGCACCAGGACTTGAACCC 60.607 60.000 0.00 0.00 0.00 4.11
535 539 1.301716 GCGAGCACCAGGACTTGAA 60.302 57.895 0.00 0.00 0.00 2.69
564 568 4.642885 TCGCCGGAAATCCTGAAATAAATT 59.357 37.500 5.05 0.00 0.00 1.82
596 600 2.169352 ACGGGAACATCTCCTCTGATTG 59.831 50.000 0.00 0.00 44.68 2.67
598 602 2.035632 GACGGGAACATCTCCTCTGAT 58.964 52.381 0.00 0.00 44.68 2.90
600 604 1.186200 TGACGGGAACATCTCCTCTG 58.814 55.000 0.00 0.00 44.68 3.35
601 605 1.550976 GTTGACGGGAACATCTCCTCT 59.449 52.381 0.00 0.00 44.68 3.69
619 623 4.471726 CGTAGGCGCCTCGTCGTT 62.472 66.667 36.73 10.36 36.23 3.85
623 627 2.827190 TCATCGTAGGCGCCTCGT 60.827 61.111 36.73 21.23 38.14 4.18
624 628 2.337749 AAGTCATCGTAGGCGCCTCG 62.338 60.000 36.73 32.58 38.14 4.63
625 629 0.595310 GAAGTCATCGTAGGCGCCTC 60.595 60.000 36.73 23.04 38.14 4.70
626 630 1.437986 GAAGTCATCGTAGGCGCCT 59.562 57.895 34.85 34.85 38.14 5.52
627 631 1.944676 CGAAGTCATCGTAGGCGCC 60.945 63.158 21.89 21.89 46.52 6.53
628 632 3.601981 CGAAGTCATCGTAGGCGC 58.398 61.111 0.00 0.00 46.52 6.53
635 639 6.693113 TCATCTTGAGATTTACGAAGTCATCG 59.307 38.462 0.00 0.00 44.39 3.84
636 640 7.489435 TGTCATCTTGAGATTTACGAAGTCATC 59.511 37.037 0.00 0.00 35.39 2.92
637 641 7.323420 TGTCATCTTGAGATTTACGAAGTCAT 58.677 34.615 0.00 0.00 35.39 3.06
651 655 2.200067 GAGTCGGCATGTCATCTTGAG 58.800 52.381 0.00 0.00 0.00 3.02
668 672 3.323115 TGAGCACATTTGAGAGACTGAGT 59.677 43.478 0.00 0.00 0.00 3.41
680 684 5.311649 ACATCCTATCCCTATGAGCACATTT 59.688 40.000 0.83 0.00 37.87 2.32
681 685 4.848660 ACATCCTATCCCTATGAGCACATT 59.151 41.667 0.83 0.00 37.87 2.71
683 687 3.580022 CACATCCTATCCCTATGAGCACA 59.420 47.826 0.00 0.00 0.00 4.57
706 710 3.727726 TCACCCTATGAACGCATACATG 58.272 45.455 0.00 0.00 35.94 3.21
707 711 4.415881 TTCACCCTATGAACGCATACAT 57.584 40.909 0.00 0.00 42.62 2.29
728 733 2.923655 GCTCATACATACGCGCATACAT 59.076 45.455 5.73 0.00 0.00 2.29
737 742 2.647337 ACGTAAGCGCTCATACATACG 58.353 47.619 26.72 26.72 42.83 3.06
744 749 3.564644 ACAGTATAGACGTAAGCGCTCAT 59.435 43.478 12.06 0.00 42.83 2.90
820 840 0.253327 GAGCTAACCACTTCAGGGGG 59.747 60.000 0.00 0.00 0.00 5.40
848 868 2.492881 TGGTTACGTACATGTCCACGAT 59.507 45.455 24.02 12.66 40.56 3.73
870 890 0.866061 GTCGCATGCGTACGTCATCT 60.866 55.000 36.50 0.00 40.74 2.90
892 912 0.798771 TTGCGGTGTTTGTTTCGTGC 60.799 50.000 0.00 0.00 0.00 5.34
903 923 1.388837 GGTGGAGGTTTTTGCGGTGT 61.389 55.000 0.00 0.00 0.00 4.16
935 955 1.079503 GATTGTGGCGTGACTTCCTC 58.920 55.000 0.00 0.00 0.00 3.71
936 956 0.321653 GGATTGTGGCGTGACTTCCT 60.322 55.000 0.00 0.00 0.00 3.36
937 957 1.305930 GGGATTGTGGCGTGACTTCC 61.306 60.000 0.00 0.00 0.00 3.46
939 959 1.303317 GGGGATTGTGGCGTGACTT 60.303 57.895 0.00 0.00 0.00 3.01
952 973 1.274703 ATCAGTGTCGCCTTGGGGAT 61.275 55.000 9.60 0.00 33.58 3.85
973 995 1.683917 AGTCTAGGCGCTGAATCGATT 59.316 47.619 11.20 11.20 0.00 3.34
980 1002 1.828660 GCCCTAGTCTAGGCGCTGA 60.829 63.158 19.30 0.10 44.86 4.26
986 1008 1.821061 CGCCATGGCCCTAGTCTAGG 61.821 65.000 30.79 17.97 45.81 3.02
987 1009 1.668294 CGCCATGGCCCTAGTCTAG 59.332 63.158 30.79 9.64 37.98 2.43
988 1010 1.837051 CCGCCATGGCCCTAGTCTA 60.837 63.158 30.79 0.00 37.98 2.59
989 1011 3.164269 CCGCCATGGCCCTAGTCT 61.164 66.667 30.79 0.00 37.98 3.24
1397 1428 4.469657 TGAAGCATTTTCCTTGTACCTGT 58.530 39.130 0.00 0.00 0.00 4.00
1398 1429 4.520492 ACTGAAGCATTTTCCTTGTACCTG 59.480 41.667 0.00 0.00 0.00 4.00
1404 1435 4.228912 ACGAACTGAAGCATTTTCCTTG 57.771 40.909 0.00 0.00 0.00 3.61
1406 1437 3.058914 CGAACGAACTGAAGCATTTTCCT 60.059 43.478 0.00 0.00 0.00 3.36
1541 1581 0.317854 GAAACTGTCGGTTGCCTTGC 60.318 55.000 0.00 0.00 38.29 4.01
1556 1596 2.137523 CAAGTTGCATGCCCTTGAAAC 58.862 47.619 29.47 20.01 38.23 2.78
1572 1612 3.879892 GAGAACTCCAAACTGAAGCAAGT 59.120 43.478 0.00 0.00 0.00 3.16
1615 1655 5.063204 TCCACAGTTCCATGAAACTAACAG 58.937 41.667 0.00 0.00 37.38 3.16
1636 1676 1.134670 AGCTACGTGATCCAGCTTTCC 60.135 52.381 3.93 0.00 42.95 3.13
1641 1681 0.457851 ACTGAGCTACGTGATCCAGC 59.542 55.000 0.00 0.00 35.49 4.85
1745 1785 3.181474 CCAAGAAATCTACTCCCTCCGTC 60.181 52.174 0.00 0.00 0.00 4.79
2060 2103 1.485066 AGTTCAAGGGACTGTTCGTGT 59.515 47.619 0.00 0.00 40.86 4.49
2086 2129 2.169352 AGTAGAGATGCCATGCTTTCGT 59.831 45.455 0.00 0.00 0.00 3.85
2099 2142 3.187227 CACGCTTGCAACAAAGTAGAGAT 59.813 43.478 0.00 0.00 0.00 2.75
2178 2221 5.130145 AGTGGTTCTAATCTCATCCCTCTTG 59.870 44.000 0.00 0.00 0.00 3.02
2179 2222 5.284582 AGTGGTTCTAATCTCATCCCTCTT 58.715 41.667 0.00 0.00 0.00 2.85
2187 2230 2.108168 CCCCGAGTGGTTCTAATCTCA 58.892 52.381 0.00 0.00 0.00 3.27
2202 2246 2.158219 TCCTCATAATTAGGAGCCCCGA 60.158 50.000 19.37 9.90 38.24 5.14
2210 2254 7.821846 GCTAATCCTCTTGTCCTCATAATTAGG 59.178 40.741 0.00 0.00 35.26 2.69
2255 2303 8.609483 TCTAGTTCTAGTTCTAGTTGGTCCTAA 58.391 37.037 16.91 0.00 36.17 2.69
2328 2379 6.071616 CCTCTCCTCTAACATATACTTGAGGC 60.072 46.154 0.00 0.00 40.42 4.70
2382 2440 3.885521 GCTGGCGCATCAAGGAGC 61.886 66.667 10.83 0.26 35.78 4.70
2384 2442 3.565961 TTGGCTGGCGCATCAAGGA 62.566 57.895 10.83 0.00 38.10 3.36
2390 2448 4.365111 TTCCCTTGGCTGGCGCAT 62.365 61.111 10.83 0.00 38.10 4.73
2409 2467 1.394963 GGGTCCTACTTGGGGAGGA 59.605 63.158 0.00 0.00 39.63 3.71
2410 2468 1.693103 GGGGTCCTACTTGGGGAGG 60.693 68.421 0.00 0.00 36.20 4.30
2411 2469 1.693103 GGGGGTCCTACTTGGGGAG 60.693 68.421 0.00 0.00 36.20 4.30
2412 2470 2.457794 GGGGGTCCTACTTGGGGA 59.542 66.667 0.00 0.00 36.20 4.81
2428 2486 0.704076 TTCTTTCCATGTGGAGGGGG 59.296 55.000 1.49 0.00 46.36 5.40
2429 2487 1.839424 GTTCTTTCCATGTGGAGGGG 58.161 55.000 1.49 0.00 46.36 4.79
2430 2488 1.453155 CGTTCTTTCCATGTGGAGGG 58.547 55.000 1.49 0.18 46.36 4.30
2431 2489 0.804989 GCGTTCTTTCCATGTGGAGG 59.195 55.000 1.49 0.51 46.36 4.30
2432 2490 1.734465 GAGCGTTCTTTCCATGTGGAG 59.266 52.381 1.49 0.00 46.36 3.86
2433 2491 1.610624 GGAGCGTTCTTTCCATGTGGA 60.611 52.381 0.00 0.00 43.73 4.02
2434 2492 0.804989 GGAGCGTTCTTTCCATGTGG 59.195 55.000 0.00 0.00 33.55 4.17
2435 2493 1.813513 AGGAGCGTTCTTTCCATGTG 58.186 50.000 0.00 0.00 35.88 3.21
2436 2494 2.154462 CAAGGAGCGTTCTTTCCATGT 58.846 47.619 0.00 0.00 35.88 3.21
2437 2495 2.426522 TCAAGGAGCGTTCTTTCCATG 58.573 47.619 0.00 0.00 35.88 3.66
2438 2496 2.859165 TCAAGGAGCGTTCTTTCCAT 57.141 45.000 0.00 0.00 35.88 3.41
2439 2497 2.426522 CATCAAGGAGCGTTCTTTCCA 58.573 47.619 0.00 0.00 35.88 3.53
2440 2498 1.131315 GCATCAAGGAGCGTTCTTTCC 59.869 52.381 0.00 0.00 0.00 3.13
2441 2499 2.534231 GCATCAAGGAGCGTTCTTTC 57.466 50.000 0.00 0.00 0.00 2.62
2449 2507 3.885521 GCTGGCGCATCAAGGAGC 61.886 66.667 10.83 0.26 35.78 4.70
2450 2508 3.207669 GGCTGGCGCATCAAGGAG 61.208 66.667 10.83 0.00 38.10 3.69
2451 2509 3.565961 TTGGCTGGCGCATCAAGGA 62.566 57.895 10.83 0.00 38.10 3.36
2452 2510 3.060020 CTTGGCTGGCGCATCAAGG 62.060 63.158 10.83 0.00 38.10 3.61
2453 2511 2.488355 CTTGGCTGGCGCATCAAG 59.512 61.111 10.83 12.75 38.10 3.02
2454 2512 3.063704 CCTTGGCTGGCGCATCAA 61.064 61.111 10.83 6.75 38.10 2.57
2456 2514 4.802051 TCCCTTGGCTGGCGCATC 62.802 66.667 10.83 0.00 38.10 3.91
2457 2515 4.365111 TTCCCTTGGCTGGCGCAT 62.365 61.111 10.83 0.00 38.10 4.73
2460 2518 2.747855 GACTTCCCTTGGCTGGCG 60.748 66.667 0.00 0.00 0.00 5.69
2461 2519 2.361737 GGACTTCCCTTGGCTGGC 60.362 66.667 0.00 0.00 0.00 4.85
2462 2520 3.500635 AGGACTTCCCTTGGCTGG 58.499 61.111 0.00 0.00 44.85 4.85
2471 2529 1.205055 CCTACTTGGGGAGGACTTCC 58.795 60.000 0.00 0.00 46.00 3.46
2472 2530 2.249309 TCCTACTTGGGGAGGACTTC 57.751 55.000 0.00 0.00 36.92 3.01
2476 2534 1.394963 GGGTCCTACTTGGGGAGGA 59.605 63.158 0.00 0.00 39.63 3.71
2477 2535 1.693103 GGGGTCCTACTTGGGGAGG 60.693 68.421 0.00 0.00 36.20 4.30
2478 2536 1.693103 GGGGGTCCTACTTGGGGAG 60.693 68.421 0.00 0.00 36.20 4.30
2479 2537 2.457794 GGGGGTCCTACTTGGGGA 59.542 66.667 0.00 0.00 36.20 4.81
2494 2552 1.307647 CCTTTCCATGTGGAGGGGG 59.692 63.158 12.45 8.22 46.36 5.40
2495 2553 1.307647 CCCTTTCCATGTGGAGGGG 59.692 63.158 20.21 20.21 46.36 4.79
2496 2554 1.214305 TCCCCTTTCCATGTGGAGGG 61.214 60.000 16.03 16.03 46.36 4.30
2497 2555 0.257039 CTCCCCTTTCCATGTGGAGG 59.743 60.000 1.49 1.40 46.36 4.30
2498 2556 0.394899 GCTCCCCTTTCCATGTGGAG 60.395 60.000 1.49 0.00 46.36 3.86
2499 2557 1.691219 GCTCCCCTTTCCATGTGGA 59.309 57.895 0.00 0.00 43.73 4.02
2500 2558 4.344237 GCTCCCCTTTCCATGTGG 57.656 61.111 0.00 0.00 0.00 4.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.