Multiple sequence alignment - TraesCS4D01G342700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G342700 chr4D 100.000 6116 0 0 1 6116 498956053 498962168 0.000000e+00 11295.0
1 TraesCS4D01G342700 chr4D 95.122 41 1 1 4436 4476 165888328 165888289 5.120000e-06 63.9
2 TraesCS4D01G342700 chr4B 93.289 2876 109 44 3037 5881 641421560 641424382 0.000000e+00 4165.0
3 TraesCS4D01G342700 chr4B 84.924 1519 126 38 1527 2980 641420081 641421561 0.000000e+00 1441.0
4 TraesCS4D01G342700 chr4B 82.143 924 71 47 559 1426 641419133 641420018 0.000000e+00 706.0
5 TraesCS4D01G342700 chr4B 89.143 350 26 7 1 344 641418464 641418807 5.670000e-115 425.0
6 TraesCS4D01G342700 chr4B 88.462 78 8 1 4478 4554 641570821 641570898 6.530000e-15 93.5
7 TraesCS4D01G342700 chr4B 88.462 78 8 1 4478 4554 641612005 641612082 6.530000e-15 93.5
8 TraesCS4D01G342700 chr4B 88.462 78 8 1 4478 4554 641648708 641648785 6.530000e-15 93.5
9 TraesCS4D01G342700 chr4B 85.227 88 9 1 365 452 12517341 12517258 3.040000e-13 87.9
10 TraesCS4D01G342700 chr4B 87.037 54 3 3 447 499 578345219 578345169 2.380000e-04 58.4
11 TraesCS4D01G342700 chr4B 87.037 54 3 3 447 499 578402990 578402940 2.380000e-04 58.4
12 TraesCS4D01G342700 chr4B 87.037 54 3 3 447 499 578430691 578430641 2.380000e-04 58.4
13 TraesCS4D01G342700 chr4B 87.037 54 3 3 447 499 578475269 578475219 2.380000e-04 58.4
14 TraesCS4D01G342700 chr5A 95.755 2450 75 12 1995 4434 679755826 679758256 0.000000e+00 3921.0
15 TraesCS4D01G342700 chr5A 90.449 890 41 15 4478 5359 679758244 679759097 0.000000e+00 1133.0
16 TraesCS4D01G342700 chr5A 81.723 1056 87 57 861 1868 679754829 679755826 0.000000e+00 784.0
17 TraesCS4D01G342700 chr5A 79.106 1029 104 45 1881 2854 180350193 180351165 1.890000e-169 606.0
18 TraesCS4D01G342700 chr5A 81.992 261 32 10 24 281 679754367 679754615 2.230000e-49 207.0
19 TraesCS4D01G342700 chr6A 82.856 2409 254 68 1997 4309 581798083 581795738 0.000000e+00 2013.0
20 TraesCS4D01G342700 chr6A 97.727 44 1 0 5202 5245 581795305 581795262 6.570000e-10 76.8
21 TraesCS4D01G342700 chr6B 82.856 2269 241 72 2151 4338 657286043 657283842 0.000000e+00 1899.0
22 TraesCS4D01G342700 chr6B 89.412 255 15 2 5874 6116 417805 418059 1.660000e-80 311.0
23 TraesCS4D01G342700 chr6B 86.190 210 28 1 1881 2090 33374609 33374401 6.170000e-55 226.0
24 TraesCS4D01G342700 chr6B 97.727 44 1 0 5202 5245 657283431 657283388 6.570000e-10 76.8
25 TraesCS4D01G342700 chr6D 83.893 1937 199 56 2440 4308 434462537 434460646 0.000000e+00 1744.0
26 TraesCS4D01G342700 chr6D 79.590 1024 104 43 1881 2854 7893887 7892919 2.400000e-178 636.0
27 TraesCS4D01G342700 chr6D 80.000 745 81 25 1881 2605 142861668 142862364 7.130000e-134 488.0
28 TraesCS4D01G342700 chr6D 86.454 251 24 8 2605 2854 142862394 142862635 3.630000e-67 267.0
29 TraesCS4D01G342700 chr6D 97.297 37 1 0 4441 4477 3923847 3923811 5.120000e-06 63.9
30 TraesCS4D01G342700 chr6D 91.489 47 1 1 5202 5245 434460210 434460164 1.840000e-05 62.1
31 TraesCS4D01G342700 chrUn 79.610 1025 102 42 1881 2854 94925468 94926436 2.400000e-178 636.0
32 TraesCS4D01G342700 chrUn 88.235 51 2 3 447 496 345775988 345776035 2.380000e-04 58.4
33 TraesCS4D01G342700 chr2A 79.764 934 111 41 1881 2778 704701315 704702206 1.890000e-169 606.0
34 TraesCS4D01G342700 chr2A 93.023 43 3 0 5696 5738 526296966 526297008 5.120000e-06 63.9
35 TraesCS4D01G342700 chr2A 100.000 31 0 0 450 480 768058162 768058192 2.380000e-04 58.4
36 TraesCS4D01G342700 chr3D 78.922 1020 118 47 1881 2854 167407948 167408916 2.440000e-168 603.0
37 TraesCS4D01G342700 chr3D 93.822 259 4 2 5870 6116 20896728 20896986 4.470000e-101 379.0
38 TraesCS4D01G342700 chr3D 93.478 46 3 0 454 499 486053733 486053688 1.100000e-07 69.4
39 TraesCS4D01G342700 chr2D 80.403 745 78 25 1881 2605 190425416 190426112 7.070000e-139 505.0
40 TraesCS4D01G342700 chr2D 87.356 87 6 1 366 452 11025402 11025321 1.810000e-15 95.3
41 TraesCS4D01G342700 chr2D 97.500 40 1 0 4437 4476 605457338 605457299 1.100000e-07 69.4
42 TraesCS4D01G342700 chr2D 97.436 39 1 0 4438 4476 79979887 79979849 3.960000e-07 67.6
43 TraesCS4D01G342700 chr7A 80.107 749 77 26 1881 2605 259566568 259565868 5.510000e-135 492.0
44 TraesCS4D01G342700 chr7A 91.304 46 3 1 4433 4477 17210606 17210561 1.840000e-05 62.1
45 TraesCS4D01G342700 chr3A 90.805 87 4 1 366 452 681661108 681661026 5.010000e-21 113.0
46 TraesCS4D01G342700 chr2B 97.500 40 1 0 4437 4476 131518240 131518201 1.100000e-07 69.4
47 TraesCS4D01G342700 chr7D 90.000 50 4 1 451 499 263451628 263451677 5.120000e-06 63.9
48 TraesCS4D01G342700 chr5B 95.122 41 1 1 4436 4476 606979064 606979103 5.120000e-06 63.9
49 TraesCS4D01G342700 chr7B 91.304 46 3 1 4432 4477 743724833 743724789 1.840000e-05 62.1
50 TraesCS4D01G342700 chr3B 93.023 43 1 2 454 496 254943897 254943857 1.840000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G342700 chr4D 498956053 498962168 6115 False 11295.00 11295 100.00000 1 6116 1 chr4D.!!$F1 6115
1 TraesCS4D01G342700 chr4B 641418464 641424382 5918 False 1684.25 4165 87.37475 1 5881 4 chr4B.!!$F4 5880
2 TraesCS4D01G342700 chr5A 679754367 679759097 4730 False 1511.25 3921 87.47975 24 5359 4 chr5A.!!$F2 5335
3 TraesCS4D01G342700 chr5A 180350193 180351165 972 False 606.00 606 79.10600 1881 2854 1 chr5A.!!$F1 973
4 TraesCS4D01G342700 chr6A 581795262 581798083 2821 True 1044.90 2013 90.29150 1997 5245 2 chr6A.!!$R1 3248
5 TraesCS4D01G342700 chr6B 657283388 657286043 2655 True 987.90 1899 90.29150 2151 5245 2 chr6B.!!$R2 3094
6 TraesCS4D01G342700 chr6D 434460164 434462537 2373 True 903.05 1744 87.69100 2440 5245 2 chr6D.!!$R3 2805
7 TraesCS4D01G342700 chr6D 7892919 7893887 968 True 636.00 636 79.59000 1881 2854 1 chr6D.!!$R2 973
8 TraesCS4D01G342700 chr6D 142861668 142862635 967 False 377.50 488 83.22700 1881 2854 2 chr6D.!!$F1 973
9 TraesCS4D01G342700 chrUn 94925468 94926436 968 False 636.00 636 79.61000 1881 2854 1 chrUn.!!$F1 973
10 TraesCS4D01G342700 chr2A 704701315 704702206 891 False 606.00 606 79.76400 1881 2778 1 chr2A.!!$F2 897
11 TraesCS4D01G342700 chr3D 167407948 167408916 968 False 603.00 603 78.92200 1881 2854 1 chr3D.!!$F2 973
12 TraesCS4D01G342700 chr2D 190425416 190426112 696 False 505.00 505 80.40300 1881 2605 1 chr2D.!!$F1 724
13 TraesCS4D01G342700 chr7A 259565868 259566568 700 True 492.00 492 80.10700 1881 2605 1 chr7A.!!$R2 724

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
612 916 0.179067 TGTCACGTGGTGGGAAACTC 60.179 55.000 17.00 0.00 33.87 3.01 F
1300 1640 0.032952 TCGTGGCTTACTTTCGCTGT 59.967 50.000 0.00 0.00 0.00 4.40 F
1489 1860 0.320771 GTGTGGTTCTCGTCTGGCAT 60.321 55.000 0.00 0.00 0.00 4.40 F
1934 2328 0.863956 TGGGGTGAGGTTGGGATTTT 59.136 50.000 0.00 0.00 0.00 1.82 F
2810 3313 0.320771 TTTCAGAAGGTGAGGCGCTC 60.321 55.000 7.64 3.37 36.21 5.03 F
3614 4155 2.912956 TCCTGTATTGGCTCTTGTCCTT 59.087 45.455 0.00 0.00 0.00 3.36 F
4434 5006 4.102367 AGAGAGAAGCTTGTCTTTTCAGGT 59.898 41.667 25.35 2.58 38.12 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2087 2486 0.038455 TCAAAACCATGGTACCCGGG 59.962 55.000 22.25 22.25 0.00 5.73 R
2999 3506 1.561643 ATGGACCACGACTGACTGAT 58.438 50.000 0.00 0.00 0.00 2.90 R
3614 4155 0.391661 GGAGAGCCAAAGATGCGACA 60.392 55.000 0.00 0.00 0.00 4.35 R
3852 4397 5.177511 GCCTGCATTAGAAAAAGGAACAAAC 59.822 40.000 0.00 0.00 0.00 2.93 R
4454 5026 0.454196 TGTATGAGCGCTTGCGTCTA 59.546 50.000 13.26 3.62 45.69 2.59 R
4785 5375 1.336332 ACGTAACTGCTCTGCACTCAG 60.336 52.381 0.00 4.17 41.67 3.35 R
6002 6622 0.035458 AAGGTTGGAGAAGACCTGCG 59.965 55.000 0.00 0.00 45.32 5.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 0.716108 GTGTCGCTTTGATCTGACGG 59.284 55.000 0.00 0.00 34.11 4.79
22 23 0.737715 GTCGCTTTGATCTGACGGCT 60.738 55.000 0.00 0.00 0.00 5.52
26 27 1.560923 CTTTGATCTGACGGCTACGG 58.439 55.000 0.00 0.00 46.48 4.02
78 79 1.379527 GACCGATCGAAAATTGGGCT 58.620 50.000 18.66 0.00 0.00 5.19
86 87 1.260544 GAAAATTGGGCTGGCTGACT 58.739 50.000 0.00 0.00 0.00 3.41
115 116 1.545582 GCACTGGCCTTTAGCAATTGA 59.454 47.619 10.34 0.00 46.50 2.57
116 117 2.029110 GCACTGGCCTTTAGCAATTGAA 60.029 45.455 10.34 0.00 46.50 2.69
117 118 3.841643 CACTGGCCTTTAGCAATTGAAG 58.158 45.455 10.34 3.99 46.50 3.02
122 126 6.112927 TGGCCTTTAGCAATTGAAGAAAAT 57.887 33.333 10.34 0.00 46.50 1.82
221 227 9.990868 TTATCCAAGGCATGAGATATACTAGTA 57.009 33.333 4.77 4.77 0.00 1.82
269 275 1.409412 CAGTTGTCAACTCTCGACCG 58.591 55.000 15.48 0.00 40.46 4.79
279 285 5.908499 GTCAACTCTCGACCGTATTATTCTC 59.092 44.000 0.00 0.00 0.00 2.87
345 387 1.066605 CGTACCAGGAACCAGATACCG 59.933 57.143 0.00 0.00 0.00 4.02
346 388 2.105766 GTACCAGGAACCAGATACCGT 58.894 52.381 0.00 0.00 0.00 4.83
354 396 1.191535 ACCAGATACCGTAAGCAGCA 58.808 50.000 0.00 0.00 0.00 4.41
361 403 1.961793 ACCGTAAGCAGCACTGAAAA 58.038 45.000 0.81 0.00 0.00 2.29
362 404 2.504367 ACCGTAAGCAGCACTGAAAAT 58.496 42.857 0.81 0.00 0.00 1.82
364 406 2.414559 CCGTAAGCAGCACTGAAAATGG 60.415 50.000 0.81 0.00 0.00 3.16
365 407 2.226437 CGTAAGCAGCACTGAAAATGGT 59.774 45.455 0.81 0.00 0.00 3.55
366 408 3.435327 CGTAAGCAGCACTGAAAATGGTA 59.565 43.478 0.81 0.00 0.00 3.25
367 409 3.923017 AAGCAGCACTGAAAATGGTAC 57.077 42.857 0.81 0.00 0.00 3.34
368 410 3.146104 AGCAGCACTGAAAATGGTACT 57.854 42.857 0.81 0.00 0.00 2.73
370 412 3.503748 AGCAGCACTGAAAATGGTACTTC 59.496 43.478 0.81 0.00 0.00 3.01
371 413 3.366374 GCAGCACTGAAAATGGTACTTCC 60.366 47.826 0.81 0.00 0.00 3.46
372 414 4.074970 CAGCACTGAAAATGGTACTTCCT 58.925 43.478 0.00 0.00 37.07 3.36
373 415 4.154918 CAGCACTGAAAATGGTACTTCCTC 59.845 45.833 0.00 0.00 37.07 3.71
374 416 3.440522 GCACTGAAAATGGTACTTCCTCC 59.559 47.826 0.00 0.00 37.07 4.30
375 417 3.684788 CACTGAAAATGGTACTTCCTCCG 59.315 47.826 0.00 0.00 37.07 4.63
376 418 3.326880 ACTGAAAATGGTACTTCCTCCGT 59.673 43.478 0.00 0.00 37.07 4.69
377 419 4.529377 ACTGAAAATGGTACTTCCTCCGTA 59.471 41.667 0.00 0.00 37.07 4.02
378 420 4.824289 TGAAAATGGTACTTCCTCCGTAC 58.176 43.478 0.00 0.00 37.18 3.67
379 421 4.283978 TGAAAATGGTACTTCCTCCGTACA 59.716 41.667 0.00 0.00 39.11 2.90
380 422 3.881937 AATGGTACTTCCTCCGTACAC 57.118 47.619 0.00 0.00 39.11 2.90
381 423 2.592102 TGGTACTTCCTCCGTACACT 57.408 50.000 0.00 0.00 39.11 3.55
382 424 3.719268 TGGTACTTCCTCCGTACACTA 57.281 47.619 0.00 0.00 39.11 2.74
383 425 4.032960 TGGTACTTCCTCCGTACACTAA 57.967 45.455 0.00 0.00 39.11 2.24
384 426 4.603131 TGGTACTTCCTCCGTACACTAAT 58.397 43.478 0.00 0.00 39.11 1.73
385 427 5.754782 TGGTACTTCCTCCGTACACTAATA 58.245 41.667 0.00 0.00 39.11 0.98
386 428 6.367983 TGGTACTTCCTCCGTACACTAATAT 58.632 40.000 0.00 0.00 39.11 1.28
387 429 7.517320 TGGTACTTCCTCCGTACACTAATATA 58.483 38.462 0.00 0.00 39.11 0.86
388 430 7.998383 TGGTACTTCCTCCGTACACTAATATAA 59.002 37.037 0.00 0.00 39.11 0.98
389 431 8.850156 GGTACTTCCTCCGTACACTAATATAAA 58.150 37.037 0.00 0.00 39.11 1.40
392 434 7.924947 ACTTCCTCCGTACACTAATATAAAAGC 59.075 37.037 0.00 0.00 0.00 3.51
393 435 6.441274 TCCTCCGTACACTAATATAAAAGCG 58.559 40.000 0.00 0.00 0.00 4.68
394 436 6.039717 TCCTCCGTACACTAATATAAAAGCGT 59.960 38.462 0.00 0.00 0.00 5.07
395 437 6.698766 CCTCCGTACACTAATATAAAAGCGTT 59.301 38.462 0.00 0.00 0.00 4.84
396 438 7.223387 CCTCCGTACACTAATATAAAAGCGTTT 59.777 37.037 2.53 2.53 0.00 3.60
397 439 9.236691 CTCCGTACACTAATATAAAAGCGTTTA 57.763 33.333 7.30 7.30 33.76 2.01
398 440 9.236691 TCCGTACACTAATATAAAAGCGTTTAG 57.763 33.333 10.55 1.25 32.76 1.85
399 441 9.236691 CCGTACACTAATATAAAAGCGTTTAGA 57.763 33.333 10.55 6.46 32.76 2.10
403 445 8.876790 ACACTAATATAAAAGCGTTTAGACCAC 58.123 33.333 10.55 0.00 32.76 4.16
404 446 9.095065 CACTAATATAAAAGCGTTTAGACCACT 57.905 33.333 10.55 0.00 32.76 4.00
408 450 9.609346 AATATAAAAGCGTTTAGACCACTACAT 57.391 29.630 10.55 0.00 32.76 2.29
409 451 7.916914 ATAAAAGCGTTTAGACCACTACATT 57.083 32.000 10.55 0.00 32.76 2.71
411 453 7.733402 AAAAGCGTTTAGACCACTACATTAA 57.267 32.000 0.00 0.00 0.00 1.40
412 454 7.916914 AAAGCGTTTAGACCACTACATTAAT 57.083 32.000 0.00 0.00 0.00 1.40
413 455 6.903883 AGCGTTTAGACCACTACATTAATG 57.096 37.500 14.01 14.01 0.00 1.90
414 456 6.636705 AGCGTTTAGACCACTACATTAATGA 58.363 36.000 22.16 5.10 0.00 2.57
415 457 7.272978 AGCGTTTAGACCACTACATTAATGAT 58.727 34.615 22.16 8.81 0.00 2.45
416 458 7.438459 AGCGTTTAGACCACTACATTAATGATC 59.562 37.037 22.16 8.87 0.00 2.92
417 459 7.438459 GCGTTTAGACCACTACATTAATGATCT 59.562 37.037 22.16 14.48 0.00 2.75
418 460 9.961265 CGTTTAGACCACTACATTAATGATCTA 57.039 33.333 22.16 13.66 0.00 1.98
456 498 9.817809 TTATATTAGTTTACAGAAGGAGCAGTG 57.182 33.333 0.00 0.00 0.00 3.66
457 499 5.801531 TTAGTTTACAGAAGGAGCAGTGA 57.198 39.130 0.00 0.00 0.00 3.41
458 500 4.899352 AGTTTACAGAAGGAGCAGTGAT 57.101 40.909 0.00 0.00 0.00 3.06
459 501 4.826556 AGTTTACAGAAGGAGCAGTGATC 58.173 43.478 0.00 0.00 0.00 2.92
460 502 4.530161 AGTTTACAGAAGGAGCAGTGATCT 59.470 41.667 8.52 0.00 0.00 2.75
461 503 5.717178 AGTTTACAGAAGGAGCAGTGATCTA 59.283 40.000 8.52 0.00 0.00 1.98
462 504 6.211584 AGTTTACAGAAGGAGCAGTGATCTAA 59.788 38.462 8.52 0.00 0.00 2.10
463 505 6.605471 TTACAGAAGGAGCAGTGATCTAAA 57.395 37.500 8.52 0.00 0.00 1.85
464 506 4.826556 ACAGAAGGAGCAGTGATCTAAAC 58.173 43.478 8.52 0.00 0.00 2.01
465 507 3.862267 CAGAAGGAGCAGTGATCTAAACG 59.138 47.826 8.52 0.00 0.00 3.60
466 508 2.301577 AGGAGCAGTGATCTAAACGC 57.698 50.000 8.52 0.00 0.00 4.84
467 509 1.827969 AGGAGCAGTGATCTAAACGCT 59.172 47.619 8.52 0.00 32.68 5.07
468 510 2.159170 AGGAGCAGTGATCTAAACGCTC 60.159 50.000 8.52 14.39 40.36 5.03
469 511 2.159170 GGAGCAGTGATCTAAACGCTCT 60.159 50.000 8.52 2.77 40.63 4.09
470 512 3.516615 GAGCAGTGATCTAAACGCTCTT 58.483 45.455 0.00 0.00 39.20 2.85
471 513 4.440250 GGAGCAGTGATCTAAACGCTCTTA 60.440 45.833 8.52 0.00 40.63 2.10
472 514 5.269505 AGCAGTGATCTAAACGCTCTTAT 57.730 39.130 0.00 0.00 0.00 1.73
473 515 6.392625 AGCAGTGATCTAAACGCTCTTATA 57.607 37.500 0.00 0.00 0.00 0.98
474 516 6.987386 AGCAGTGATCTAAACGCTCTTATAT 58.013 36.000 0.00 0.00 0.00 0.86
475 517 7.437748 AGCAGTGATCTAAACGCTCTTATATT 58.562 34.615 0.00 0.00 0.00 1.28
476 518 8.577296 AGCAGTGATCTAAACGCTCTTATATTA 58.423 33.333 0.00 0.00 0.00 0.98
477 519 9.360093 GCAGTGATCTAAACGCTCTTATATTAT 57.640 33.333 0.00 0.00 0.00 1.28
543 586 4.557496 GCAAAAGAAAAGTCCCAGCTACTG 60.557 45.833 0.00 0.00 0.00 2.74
609 913 1.521906 CGTGTCACGTGGTGGGAAA 60.522 57.895 17.00 0.00 36.74 3.13
612 916 0.179067 TGTCACGTGGTGGGAAACTC 60.179 55.000 17.00 0.00 33.87 3.01
613 917 1.068417 TCACGTGGTGGGAAACTCG 59.932 57.895 17.00 0.00 33.87 4.18
629 933 2.359792 TCGAATTTCACGAGCGAGC 58.640 52.632 0.00 0.00 34.85 5.03
630 934 1.014399 CGAATTTCACGAGCGAGCG 60.014 57.895 0.00 0.00 37.29 5.03
631 935 1.345176 GAATTTCACGAGCGAGCGG 59.655 57.895 0.00 0.00 35.12 5.52
632 936 2.618260 GAATTTCACGAGCGAGCGGC 62.618 60.000 0.00 0.00 44.05 6.53
752 1056 2.359975 CAGGGGCAGTTTCGTCCC 60.360 66.667 0.00 0.00 39.67 4.46
753 1057 4.016706 AGGGGCAGTTTCGTCCCG 62.017 66.667 0.00 0.00 43.92 5.14
787 1091 3.893399 ACCAACCGGTCCAACCCC 61.893 66.667 8.04 0.00 44.71 4.95
788 1092 4.671590 CCAACCGGTCCAACCCCC 62.672 72.222 8.04 0.00 33.75 5.40
789 1093 3.892162 CAACCGGTCCAACCCCCA 61.892 66.667 8.04 0.00 33.75 4.96
790 1094 3.104568 AACCGGTCCAACCCCCAA 61.105 61.111 8.04 0.00 33.75 4.12
791 1095 2.475172 AACCGGTCCAACCCCCAAT 61.475 57.895 8.04 0.00 33.75 3.16
803 1107 2.195683 CCCAATAGTGCGGGGCAT 59.804 61.111 0.00 0.00 41.91 4.40
806 1110 0.751277 CCAATAGTGCGGGGCATTCA 60.751 55.000 0.00 0.00 41.91 2.57
810 1114 0.978667 TAGTGCGGGGCATTCAGGTA 60.979 55.000 0.00 0.00 41.91 3.08
819 1123 1.379527 GCATTCAGGTACTTTCCCCG 58.620 55.000 0.00 0.00 34.60 5.73
894 1202 1.208706 CTCTCTTTTCCCCTCTCCCC 58.791 60.000 0.00 0.00 0.00 4.81
943 1251 3.191539 GCCGCGAGCTTCCAGAAG 61.192 66.667 8.23 2.93 41.24 2.85
951 1259 4.485554 CTTCCAGAAGCGACGGAG 57.514 61.111 0.00 0.00 0.00 4.63
952 1260 1.883732 CTTCCAGAAGCGACGGAGA 59.116 57.895 0.00 0.00 0.00 3.71
953 1261 0.243907 CTTCCAGAAGCGACGGAGAA 59.756 55.000 0.00 0.00 0.00 2.87
954 1262 0.243907 TTCCAGAAGCGACGGAGAAG 59.756 55.000 0.00 0.00 0.00 2.85
955 1263 1.153745 CCAGAAGCGACGGAGAAGG 60.154 63.158 0.00 0.00 0.00 3.46
1152 1484 4.251843 CGAGCGATTCCGGCGAGA 62.252 66.667 9.30 0.12 36.06 4.04
1189 1521 1.765074 GTCAGGGCTTGGGTGGTAA 59.235 57.895 0.00 0.00 0.00 2.85
1190 1522 0.322546 GTCAGGGCTTGGGTGGTAAG 60.323 60.000 0.00 0.00 0.00 2.34
1199 1536 1.737199 TGGGTGGTAAGCAGTTAGGT 58.263 50.000 0.00 0.00 0.00 3.08
1208 1545 2.509336 CAGTTAGGTCGCGGCCAG 60.509 66.667 34.17 12.16 0.00 4.85
1218 1555 3.202706 GCGGCCAGATTCCCGTTC 61.203 66.667 2.24 0.00 45.98 3.95
1223 1560 1.144057 CCAGATTCCCGTTCGGAGG 59.856 63.158 13.08 0.00 43.39 4.30
1227 1564 2.093869 CAGATTCCCGTTCGGAGGTTTA 60.094 50.000 13.08 0.00 43.39 2.01
1228 1565 2.770232 AGATTCCCGTTCGGAGGTTTAT 59.230 45.455 13.08 0.00 43.39 1.40
1229 1566 2.678471 TTCCCGTTCGGAGGTTTATC 57.322 50.000 13.08 0.00 43.39 1.75
1242 1579 6.990349 TCGGAGGTTTATCAATCTGTTATTCC 59.010 38.462 0.00 0.00 0.00 3.01
1247 1584 8.116026 AGGTTTATCAATCTGTTATTCCCTTGT 58.884 33.333 0.00 0.00 0.00 3.16
1252 1589 7.921786 TCAATCTGTTATTCCCTTGTTACTG 57.078 36.000 0.00 0.00 0.00 2.74
1254 1591 4.585879 TCTGTTATTCCCTTGTTACTGCC 58.414 43.478 0.00 0.00 0.00 4.85
1255 1592 3.692690 TGTTATTCCCTTGTTACTGCCC 58.307 45.455 0.00 0.00 0.00 5.36
1256 1593 3.021695 GTTATTCCCTTGTTACTGCCCC 58.978 50.000 0.00 0.00 0.00 5.80
1257 1594 1.080638 ATTCCCTTGTTACTGCCCCA 58.919 50.000 0.00 0.00 0.00 4.96
1258 1595 0.854218 TTCCCTTGTTACTGCCCCAA 59.146 50.000 0.00 0.00 0.00 4.12
1259 1596 0.854218 TCCCTTGTTACTGCCCCAAA 59.146 50.000 0.00 0.00 0.00 3.28
1262 1599 2.247358 CCTTGTTACTGCCCCAAACAT 58.753 47.619 0.00 0.00 33.44 2.71
1272 1612 2.380590 TGCCCCAAACATAGGTTTAGGT 59.619 45.455 14.81 0.00 45.18 3.08
1284 1624 2.027837 AGGTTTAGGTACGCCAAATCGT 60.028 45.455 0.00 0.00 45.49 3.73
1299 1639 1.359848 ATCGTGGCTTACTTTCGCTG 58.640 50.000 0.00 0.00 0.00 5.18
1300 1640 0.032952 TCGTGGCTTACTTTCGCTGT 59.967 50.000 0.00 0.00 0.00 4.40
1301 1641 1.270274 TCGTGGCTTACTTTCGCTGTA 59.730 47.619 0.00 0.00 0.00 2.74
1302 1642 1.654105 CGTGGCTTACTTTCGCTGTAG 59.346 52.381 0.00 0.00 0.00 2.74
1303 1643 1.393883 GTGGCTTACTTTCGCTGTAGC 59.606 52.381 0.00 0.00 37.78 3.58
1304 1644 1.275291 TGGCTTACTTTCGCTGTAGCT 59.725 47.619 2.04 0.00 39.32 3.32
1305 1645 2.494471 TGGCTTACTTTCGCTGTAGCTA 59.506 45.455 2.04 0.00 39.32 3.32
1306 1646 2.858941 GGCTTACTTTCGCTGTAGCTAC 59.141 50.000 17.30 17.30 39.32 3.58
1307 1647 3.429135 GGCTTACTTTCGCTGTAGCTACT 60.429 47.826 23.84 4.45 39.32 2.57
1308 1648 4.201990 GGCTTACTTTCGCTGTAGCTACTA 60.202 45.833 23.84 10.11 39.32 1.82
1309 1649 4.734370 GCTTACTTTCGCTGTAGCTACTAC 59.266 45.833 23.84 14.64 39.32 2.73
1313 1653 2.359981 TCGCTGTAGCTACTACCCAT 57.640 50.000 23.84 0.00 36.24 4.00
1329 1673 3.541713 ATCTCGAGGCCGCCTTCC 61.542 66.667 14.70 0.00 31.76 3.46
1331 1675 4.082523 CTCGAGGCCGCCTTCCAA 62.083 66.667 14.70 0.00 31.76 3.53
1340 1684 4.760047 GCCTTCCAAGCGAGCGGA 62.760 66.667 0.00 0.00 0.00 5.54
1343 1687 1.497722 CTTCCAAGCGAGCGGAAAC 59.502 57.895 6.06 0.00 40.71 2.78
1357 1701 0.322546 GGAAACGGGGTCATCTTGCT 60.323 55.000 0.00 0.00 0.00 3.91
1358 1702 1.534729 GAAACGGGGTCATCTTGCTT 58.465 50.000 0.00 0.00 0.00 3.91
1359 1703 1.886542 GAAACGGGGTCATCTTGCTTT 59.113 47.619 0.00 0.00 0.00 3.51
1360 1704 1.247567 AACGGGGTCATCTTGCTTTG 58.752 50.000 0.00 0.00 0.00 2.77
1361 1705 1.244019 ACGGGGTCATCTTGCTTTGC 61.244 55.000 0.00 0.00 0.00 3.68
1400 1761 8.410912 GTTATTATTCCCATCCACCTTTGTTAC 58.589 37.037 0.00 0.00 0.00 2.50
1414 1779 6.970613 CACCTTTGTTACTAGTTTGTTGGAAC 59.029 38.462 0.00 0.00 0.00 3.62
1475 1840 9.924650 ACTACTAGTACTAAGATTTTTGTGTGG 57.075 33.333 3.76 0.00 0.00 4.17
1481 1846 6.300354 ACTAAGATTTTTGTGTGGTTCTCG 57.700 37.500 0.00 0.00 0.00 4.04
1489 1860 0.320771 GTGTGGTTCTCGTCTGGCAT 60.321 55.000 0.00 0.00 0.00 4.40
1525 1896 4.340246 CCCACCTGCTGCTGCTCA 62.340 66.667 17.00 0.00 40.48 4.26
1605 1976 4.481112 CATTTCACGCTGCCGCCC 62.481 66.667 0.00 0.00 38.22 6.13
1686 2057 1.155889 CGTGCACCAGCTATGTTTCA 58.844 50.000 12.15 0.00 42.74 2.69
1708 2079 1.392589 ATGACCCATGCATTCGGAAC 58.607 50.000 15.15 9.49 0.00 3.62
1777 2148 3.160777 ACCTAACGATCTTACGCTTGG 57.839 47.619 0.00 0.00 36.70 3.61
1785 2156 4.565564 ACGATCTTACGCTTGGTTTATGTC 59.434 41.667 0.00 0.00 36.70 3.06
1789 2160 5.730550 TCTTACGCTTGGTTTATGTCATCT 58.269 37.500 0.00 0.00 0.00 2.90
1800 2171 8.055279 TGGTTTATGTCATCTTTTTCCTCATC 57.945 34.615 0.00 0.00 0.00 2.92
1806 2177 3.519510 TCATCTTTTTCCTCATCCTCGGT 59.480 43.478 0.00 0.00 0.00 4.69
1811 2182 0.902531 TTCCTCATCCTCGGTTGTCC 59.097 55.000 0.00 0.00 0.00 4.02
1822 2197 1.018910 CGGTTGTCCAAAGTTTCCGT 58.981 50.000 3.63 0.00 33.20 4.69
1829 2204 6.460537 GGTTGTCCAAAGTTTCCGTAAATCTT 60.461 38.462 0.00 0.00 0.00 2.40
1830 2205 6.067263 TGTCCAAAGTTTCCGTAAATCTTG 57.933 37.500 0.00 0.00 0.00 3.02
1844 2219 8.862085 TCCGTAAATCTTGGTTTCCTTAAAAAT 58.138 29.630 0.00 0.00 0.00 1.82
1870 2260 7.105588 TGCACATCTCATAGACATTGTAAGTT 58.894 34.615 0.00 0.00 0.00 2.66
1875 2265 7.977789 TCTCATAGACATTGTAAGTTTGCAA 57.022 32.000 0.00 0.00 37.19 4.08
1879 2269 9.624697 TCATAGACATTGTAAGTTTGCAATTTC 57.375 29.630 0.00 11.45 40.70 2.17
1901 2295 4.154737 TCAGCAAACATGTATCTGCAGTTC 59.845 41.667 22.35 6.14 37.26 3.01
1934 2328 0.863956 TGGGGTGAGGTTGGGATTTT 59.136 50.000 0.00 0.00 0.00 1.82
1935 2329 1.266178 GGGGTGAGGTTGGGATTTTG 58.734 55.000 0.00 0.00 0.00 2.44
1948 2342 5.419239 TGGGATTTTGGATGAAAATGGTC 57.581 39.130 0.00 0.00 43.12 4.02
1953 2347 4.981806 TTTGGATGAAAATGGTCGGATC 57.018 40.909 0.00 0.00 0.00 3.36
1957 2351 3.316308 GGATGAAAATGGTCGGATCTTGG 59.684 47.826 0.00 0.00 0.00 3.61
1966 2360 1.452108 CGGATCTTGGTCCAAGGGC 60.452 63.158 27.79 19.86 41.33 5.19
1970 2364 2.025321 GGATCTTGGTCCAAGGGCTTAA 60.025 50.000 27.79 10.83 41.33 1.85
1988 2382 4.822350 GCTTAAAAAGGTGACTGAGGTTCT 59.178 41.667 0.00 0.00 42.68 3.01
1991 2385 3.686916 AAAGGTGACTGAGGTTCTAGC 57.313 47.619 0.00 0.00 42.68 3.42
2072 2471 6.079424 TCTTATTTTCCTTTCGGTTGTTGG 57.921 37.500 0.00 0.00 0.00 3.77
2087 2486 1.456705 TTGGTTGGGTTCCCTGTGC 60.457 57.895 9.43 0.00 0.00 4.57
2090 2489 4.278513 TTGGGTTCCCTGTGCCCG 62.279 66.667 9.43 0.00 45.19 6.13
2095 2499 3.324108 TTCCCTGTGCCCGGGTAC 61.324 66.667 32.67 32.67 42.56 3.34
2130 2554 0.326264 AACAGGTGTCTCATGAGCCC 59.674 55.000 18.36 16.12 0.00 5.19
2610 3110 1.542472 TCAGCTGTGGCATCAAACATG 59.458 47.619 14.67 0.00 41.70 3.21
2810 3313 0.320771 TTTCAGAAGGTGAGGCGCTC 60.321 55.000 7.64 3.37 36.21 5.03
2853 3360 6.440647 GGAAATCTCTTGGGAGGGTAATTTTT 59.559 38.462 0.00 0.00 39.86 1.94
2999 3506 4.262549 CCATTTTGGGCTGTGATCTTTTGA 60.263 41.667 0.00 0.00 32.67 2.69
3001 3508 7.343068 CCATTTTGGGCTGTGATCTTTTGATC 61.343 42.308 0.00 0.00 43.57 2.92
3117 3628 4.779696 TGCCATTATCACACTGCTCATTA 58.220 39.130 0.00 0.00 0.00 1.90
3123 3634 9.241317 CCATTATCACACTGCTCATTAAATTTC 57.759 33.333 0.00 0.00 0.00 2.17
3176 3694 4.673580 GCACCAGTGATGCATTCAACTTAG 60.674 45.833 4.00 2.58 42.88 2.18
3614 4155 2.912956 TCCTGTATTGGCTCTTGTCCTT 59.087 45.455 0.00 0.00 0.00 3.36
3852 4397 6.536941 GCCTTACTGTTCTTCTTCTTATCTGG 59.463 42.308 0.00 0.00 0.00 3.86
4262 4828 5.247507 TGGCGACTGATTATTTTCCAATG 57.752 39.130 0.00 0.00 0.00 2.82
4309 4877 6.459670 TGGTAGACAAGCGTCATAATCTAA 57.540 37.500 0.00 0.00 45.23 2.10
4310 4878 7.050970 TGGTAGACAAGCGTCATAATCTAAT 57.949 36.000 0.00 0.00 45.23 1.73
4311 4879 8.173542 TGGTAGACAAGCGTCATAATCTAATA 57.826 34.615 0.00 0.00 45.23 0.98
4312 4880 8.635328 TGGTAGACAAGCGTCATAATCTAATAA 58.365 33.333 0.00 0.00 45.23 1.40
4313 4881 9.640963 GGTAGACAAGCGTCATAATCTAATAAT 57.359 33.333 0.00 0.00 45.23 1.28
4434 5006 4.102367 AGAGAGAAGCTTGTCTTTTCAGGT 59.898 41.667 25.35 2.58 38.12 4.00
4435 5007 4.786425 AGAGAAGCTTGTCTTTTCAGGTT 58.214 39.130 19.83 0.00 38.12 3.50
4588 5171 7.138692 ACTGTGAAGAAATTGTTCTCTATGC 57.861 36.000 4.52 0.00 43.59 3.14
4589 5172 6.150140 ACTGTGAAGAAATTGTTCTCTATGCC 59.850 38.462 4.52 0.00 43.59 4.40
4590 5173 6.003326 TGTGAAGAAATTGTTCTCTATGCCA 58.997 36.000 4.52 0.00 43.59 4.92
4591 5174 6.489700 TGTGAAGAAATTGTTCTCTATGCCAA 59.510 34.615 4.52 0.00 43.59 4.52
4592 5175 7.014134 TGTGAAGAAATTGTTCTCTATGCCAAA 59.986 33.333 4.52 0.00 43.59 3.28
4593 5176 8.031277 GTGAAGAAATTGTTCTCTATGCCAAAT 58.969 33.333 4.52 0.00 43.59 2.32
4594 5177 8.246180 TGAAGAAATTGTTCTCTATGCCAAATC 58.754 33.333 4.52 0.00 43.59 2.17
4595 5178 7.951347 AGAAATTGTTCTCTATGCCAAATCT 57.049 32.000 0.00 0.00 40.18 2.40
4596 5179 7.769220 AGAAATTGTTCTCTATGCCAAATCTG 58.231 34.615 0.00 0.00 40.18 2.90
4597 5180 7.613022 AGAAATTGTTCTCTATGCCAAATCTGA 59.387 33.333 0.00 0.00 40.18 3.27
4598 5181 7.893124 AATTGTTCTCTATGCCAAATCTGAT 57.107 32.000 0.00 0.00 0.00 2.90
4599 5182 6.688637 TTGTTCTCTATGCCAAATCTGATG 57.311 37.500 0.00 0.00 0.00 3.07
4600 5183 5.128205 TGTTCTCTATGCCAAATCTGATGG 58.872 41.667 0.00 0.00 41.08 3.51
4601 5184 5.128919 GTTCTCTATGCCAAATCTGATGGT 58.871 41.667 0.00 0.00 40.23 3.55
4602 5185 6.126796 TGTTCTCTATGCCAAATCTGATGGTA 60.127 38.462 0.00 0.00 40.23 3.25
4603 5186 5.858381 TCTCTATGCCAAATCTGATGGTAC 58.142 41.667 0.00 0.00 40.23 3.34
4785 5375 3.142174 AGCTTGTCTTTGTAGGAGTTGC 58.858 45.455 0.00 0.00 0.00 4.17
4989 5581 2.031857 CGCCTTTACAGTTTACGCCAAA 60.032 45.455 0.00 0.00 0.00 3.28
5118 5729 4.456280 AGCTTTAGATGTCGTGTGATGA 57.544 40.909 0.00 0.00 0.00 2.92
5119 5730 5.016051 AGCTTTAGATGTCGTGTGATGAT 57.984 39.130 0.00 0.00 0.00 2.45
5120 5731 4.807834 AGCTTTAGATGTCGTGTGATGATG 59.192 41.667 0.00 0.00 0.00 3.07
5121 5732 4.568359 GCTTTAGATGTCGTGTGATGATGT 59.432 41.667 0.00 0.00 0.00 3.06
5122 5733 5.501413 GCTTTAGATGTCGTGTGATGATGTG 60.501 44.000 0.00 0.00 0.00 3.21
5123 5734 3.599730 AGATGTCGTGTGATGATGTGT 57.400 42.857 0.00 0.00 0.00 3.72
5124 5735 3.256558 AGATGTCGTGTGATGATGTGTG 58.743 45.455 0.00 0.00 0.00 3.82
5137 5750 4.479786 TGATGTGTGTATTCATCGGGAA 57.520 40.909 0.00 0.00 42.05 3.97
5325 5945 0.823356 AACATGTGACCGGCTTTGCT 60.823 50.000 0.00 0.00 0.00 3.91
5360 5980 4.219288 GGAGATTTGTTCTGGCTGTTGATT 59.781 41.667 0.00 0.00 33.74 2.57
5383 6003 3.425659 ACTGGAAATTTGGCCTTCTCTC 58.574 45.455 3.32 0.00 0.00 3.20
5492 6112 2.027100 AGGTCAGAATCCCTCCGAAAAC 60.027 50.000 0.00 0.00 0.00 2.43
5540 6160 0.179000 AAGAGCCTTACCATCGCCAG 59.821 55.000 0.00 0.00 0.00 4.85
5541 6161 1.227674 GAGCCTTACCATCGCCAGG 60.228 63.158 0.00 0.00 0.00 4.45
5558 6178 3.357079 GTGGACGCCTGTTGCTGG 61.357 66.667 0.00 0.00 38.05 4.85
5564 6184 2.328099 CGCCTGTTGCTGGTCCTTC 61.328 63.158 0.00 0.00 38.05 3.46
5621 6241 1.174783 GAGCCACGGAGAGTCTTACA 58.825 55.000 0.00 0.00 0.00 2.41
5641 6261 2.774234 CAGATAAGCAGGAGAAGGGGAA 59.226 50.000 0.00 0.00 0.00 3.97
5644 6264 1.210885 AAGCAGGAGAAGGGGAAGGG 61.211 60.000 0.00 0.00 0.00 3.95
5648 6268 0.252927 AGGAGAAGGGGAAGGGAGTG 60.253 60.000 0.00 0.00 0.00 3.51
5649 6269 0.252742 GGAGAAGGGGAAGGGAGTGA 60.253 60.000 0.00 0.00 0.00 3.41
5650 6270 0.906066 GAGAAGGGGAAGGGAGTGAC 59.094 60.000 0.00 0.00 0.00 3.67
5651 6271 0.905337 AGAAGGGGAAGGGAGTGACG 60.905 60.000 0.00 0.00 0.00 4.35
5652 6272 0.903454 GAAGGGGAAGGGAGTGACGA 60.903 60.000 0.00 0.00 0.00 4.20
5653 6273 0.905337 AAGGGGAAGGGAGTGACGAG 60.905 60.000 0.00 0.00 0.00 4.18
5654 6274 1.609794 GGGGAAGGGAGTGACGAGT 60.610 63.158 0.00 0.00 0.00 4.18
5672 6292 3.496130 CGAGTGAGTGAGTTCAAAGCAAT 59.504 43.478 0.00 0.00 0.00 3.56
5676 6296 5.239525 AGTGAGTGAGTTCAAAGCAATTACC 59.760 40.000 0.00 0.00 0.00 2.85
5755 6375 7.431376 GCACCAAAAGTTCAGAGTAAAAACTAC 59.569 37.037 0.00 0.00 33.08 2.73
5758 6378 7.407337 CAAAAGTTCAGAGTAAAAACTACGCT 58.593 34.615 0.00 0.00 33.08 5.07
5762 6382 7.828712 AGTTCAGAGTAAAAACTACGCTCTAT 58.171 34.615 0.00 0.00 35.09 1.98
5774 6394 5.131067 ACTACGCTCTATTACATCACCAGA 58.869 41.667 0.00 0.00 0.00 3.86
5788 6408 6.248433 ACATCACCAGAAACATCCAACTAAT 58.752 36.000 0.00 0.00 0.00 1.73
5811 6431 1.661463 AGAGAAGCATCAGGGGACAA 58.339 50.000 0.00 0.00 0.00 3.18
5817 6437 0.890683 GCATCAGGGGACAAAACCAG 59.109 55.000 0.00 0.00 0.00 4.00
5818 6438 1.549203 CATCAGGGGACAAAACCAGG 58.451 55.000 0.00 0.00 0.00 4.45
5819 6439 1.075374 CATCAGGGGACAAAACCAGGA 59.925 52.381 0.00 0.00 0.00 3.86
5820 6440 0.771127 TCAGGGGACAAAACCAGGAG 59.229 55.000 0.00 0.00 0.00 3.69
5821 6441 0.478507 CAGGGGACAAAACCAGGAGT 59.521 55.000 0.00 0.00 0.00 3.85
5862 6482 5.627172 TCACAATAAAATAGCAGCACGAAC 58.373 37.500 0.00 0.00 0.00 3.95
5863 6483 5.411361 TCACAATAAAATAGCAGCACGAACT 59.589 36.000 0.00 0.00 0.00 3.01
5866 6486 6.094048 ACAATAAAATAGCAGCACGAACTGAT 59.906 34.615 12.54 9.09 40.25 2.90
5867 6487 4.346734 AAAATAGCAGCACGAACTGATG 57.653 40.909 12.54 0.00 40.25 3.07
5868 6488 2.680312 ATAGCAGCACGAACTGATGT 57.320 45.000 12.54 2.90 38.64 3.06
5871 6491 0.441533 GCAGCACGAACTGATGTGAG 59.558 55.000 12.54 0.00 38.64 3.51
5872 6492 1.936656 GCAGCACGAACTGATGTGAGA 60.937 52.381 12.54 0.00 38.64 3.27
5873 6493 2.407090 CAGCACGAACTGATGTGAGAA 58.593 47.619 3.79 0.00 40.25 2.87
5874 6494 2.156504 CAGCACGAACTGATGTGAGAAC 59.843 50.000 3.79 0.00 40.25 3.01
5875 6495 1.125021 GCACGAACTGATGTGAGAACG 59.875 52.381 0.00 0.00 38.36 3.95
5876 6496 2.661594 CACGAACTGATGTGAGAACGA 58.338 47.619 0.00 0.00 38.36 3.85
5877 6497 2.658802 CACGAACTGATGTGAGAACGAG 59.341 50.000 0.00 0.00 38.36 4.18
5878 6498 2.552743 ACGAACTGATGTGAGAACGAGA 59.447 45.455 0.00 0.00 0.00 4.04
5879 6499 3.191581 ACGAACTGATGTGAGAACGAGAT 59.808 43.478 0.00 0.00 0.00 2.75
5880 6500 3.545475 CGAACTGATGTGAGAACGAGATG 59.455 47.826 0.00 0.00 0.00 2.90
5881 6501 4.672801 CGAACTGATGTGAGAACGAGATGA 60.673 45.833 0.00 0.00 0.00 2.92
5882 6502 4.368874 ACTGATGTGAGAACGAGATGAG 57.631 45.455 0.00 0.00 0.00 2.90
5883 6503 3.114809 CTGATGTGAGAACGAGATGAGC 58.885 50.000 0.00 0.00 0.00 4.26
5884 6504 2.757314 TGATGTGAGAACGAGATGAGCT 59.243 45.455 0.00 0.00 0.00 4.09
5885 6505 2.929531 TGTGAGAACGAGATGAGCTC 57.070 50.000 6.82 6.82 40.38 4.09
5886 6506 1.474478 TGTGAGAACGAGATGAGCTCC 59.526 52.381 12.15 0.00 40.70 4.70
5887 6507 1.107114 TGAGAACGAGATGAGCTCCC 58.893 55.000 12.15 2.95 40.70 4.30
5888 6508 1.107114 GAGAACGAGATGAGCTCCCA 58.893 55.000 12.15 0.00 40.70 4.37
5889 6509 1.478510 GAGAACGAGATGAGCTCCCAA 59.521 52.381 12.15 0.00 40.70 4.12
5890 6510 1.205893 AGAACGAGATGAGCTCCCAAC 59.794 52.381 12.15 0.00 40.70 3.77
5891 6511 0.250513 AACGAGATGAGCTCCCAACC 59.749 55.000 12.15 0.00 40.70 3.77
5892 6512 1.144936 CGAGATGAGCTCCCAACCC 59.855 63.158 12.15 0.00 40.70 4.11
5893 6513 1.617018 CGAGATGAGCTCCCAACCCA 61.617 60.000 12.15 0.00 40.70 4.51
5894 6514 0.179936 GAGATGAGCTCCCAACCCAG 59.820 60.000 12.15 0.00 37.69 4.45
5895 6515 1.452833 GATGAGCTCCCAACCCAGC 60.453 63.158 12.15 0.00 35.73 4.85
5896 6516 3.335356 ATGAGCTCCCAACCCAGCG 62.335 63.158 12.15 0.00 40.84 5.18
5897 6517 3.706373 GAGCTCCCAACCCAGCGA 61.706 66.667 0.87 0.00 40.84 4.93
5898 6518 3.959991 GAGCTCCCAACCCAGCGAC 62.960 68.421 0.87 0.00 40.84 5.19
5900 6520 3.636231 CTCCCAACCCAGCGACCA 61.636 66.667 0.00 0.00 0.00 4.02
5901 6521 3.172106 TCCCAACCCAGCGACCAA 61.172 61.111 0.00 0.00 0.00 3.67
5902 6522 2.672996 CCCAACCCAGCGACCAAG 60.673 66.667 0.00 0.00 0.00 3.61
5903 6523 3.365265 CCAACCCAGCGACCAAGC 61.365 66.667 0.00 0.00 37.41 4.01
5910 6530 2.262915 AGCGACCAAGCTCCTTCG 59.737 61.111 6.47 6.47 45.67 3.79
5911 6531 2.815647 GCGACCAAGCTCCTTCGG 60.816 66.667 11.44 0.00 32.04 4.30
5912 6532 2.815647 CGACCAAGCTCCTTCGGC 60.816 66.667 0.00 0.00 0.00 5.54
5913 6533 2.815647 GACCAAGCTCCTTCGGCG 60.816 66.667 0.00 0.00 34.52 6.46
5914 6534 4.394712 ACCAAGCTCCTTCGGCGG 62.395 66.667 7.21 0.00 34.52 6.13
5949 6569 3.314331 CCGCACACCTCCAGTCCT 61.314 66.667 0.00 0.00 0.00 3.85
5950 6570 2.047844 CGCACACCTCCAGTCCTG 60.048 66.667 0.00 0.00 0.00 3.86
5951 6571 2.359230 GCACACCTCCAGTCCTGC 60.359 66.667 0.00 0.00 0.00 4.85
5952 6572 2.348998 CACACCTCCAGTCCTGCC 59.651 66.667 0.00 0.00 0.00 4.85
5953 6573 2.205462 ACACCTCCAGTCCTGCCT 59.795 61.111 0.00 0.00 0.00 4.75
5954 6574 1.915769 ACACCTCCAGTCCTGCCTC 60.916 63.158 0.00 0.00 0.00 4.70
5955 6575 2.681778 ACCTCCAGTCCTGCCTCG 60.682 66.667 0.00 0.00 0.00 4.63
5956 6576 3.465403 CCTCCAGTCCTGCCTCGG 61.465 72.222 0.00 0.00 0.00 4.63
5957 6577 2.363018 CTCCAGTCCTGCCTCGGA 60.363 66.667 0.00 0.00 0.00 4.55
6019 6639 4.285851 CGCAGGTCTTCTCCAACC 57.714 61.111 0.00 0.00 35.69 3.77
6020 6640 1.674057 CGCAGGTCTTCTCCAACCT 59.326 57.895 0.00 0.00 46.94 3.50
6021 6641 0.035458 CGCAGGTCTTCTCCAACCTT 59.965 55.000 0.00 0.00 43.45 3.50
6022 6642 1.543429 CGCAGGTCTTCTCCAACCTTT 60.543 52.381 0.00 0.00 43.45 3.11
6023 6643 2.155279 GCAGGTCTTCTCCAACCTTTC 58.845 52.381 0.00 0.00 43.45 2.62
6024 6644 2.784347 CAGGTCTTCTCCAACCTTTCC 58.216 52.381 0.00 0.00 43.45 3.13
6025 6645 1.705745 AGGTCTTCTCCAACCTTTCCC 59.294 52.381 0.00 0.00 43.45 3.97
6026 6646 1.271982 GGTCTTCTCCAACCTTTCCCC 60.272 57.143 0.00 0.00 32.54 4.81
6027 6647 0.690762 TCTTCTCCAACCTTTCCCCG 59.309 55.000 0.00 0.00 0.00 5.73
6028 6648 0.322546 CTTCTCCAACCTTTCCCCGG 60.323 60.000 0.00 0.00 0.00 5.73
6029 6649 2.361230 CTCCAACCTTTCCCCGGC 60.361 66.667 0.00 0.00 0.00 6.13
6030 6650 3.938637 CTCCAACCTTTCCCCGGCC 62.939 68.421 0.00 0.00 0.00 6.13
6046 6666 4.760047 CCGGCCGACCTGTTCTGG 62.760 72.222 30.73 0.44 0.00 3.86
6047 6667 3.691342 CGGCCGACCTGTTCTGGA 61.691 66.667 24.07 0.00 0.00 3.86
6048 6668 2.990479 GGCCGACCTGTTCTGGAT 59.010 61.111 0.00 0.00 0.00 3.41
6049 6669 1.153349 GGCCGACCTGTTCTGGATC 60.153 63.158 0.00 0.00 0.00 3.36
6050 6670 1.617947 GGCCGACCTGTTCTGGATCT 61.618 60.000 0.00 0.00 0.00 2.75
6051 6671 0.460987 GCCGACCTGTTCTGGATCTG 60.461 60.000 2.86 0.00 0.00 2.90
6052 6672 0.176680 CCGACCTGTTCTGGATCTGG 59.823 60.000 2.86 3.95 0.00 3.86
6053 6673 0.460987 CGACCTGTTCTGGATCTGGC 60.461 60.000 2.86 0.00 0.00 4.85
6054 6674 0.107459 GACCTGTTCTGGATCTGGCC 60.107 60.000 0.00 0.00 0.00 5.36
6055 6675 1.153289 CCTGTTCTGGATCTGGCCG 60.153 63.158 0.00 0.00 0.00 6.13
6056 6676 1.817099 CTGTTCTGGATCTGGCCGC 60.817 63.158 0.00 0.00 0.00 6.53
6057 6677 2.249413 CTGTTCTGGATCTGGCCGCT 62.249 60.000 0.00 0.00 0.00 5.52
6058 6678 1.817099 GTTCTGGATCTGGCCGCTG 60.817 63.158 0.00 0.00 0.00 5.18
6059 6679 3.687321 TTCTGGATCTGGCCGCTGC 62.687 63.158 0.00 0.00 0.00 5.25
6060 6680 4.172512 CTGGATCTGGCCGCTGCT 62.173 66.667 0.00 0.00 37.74 4.24
6061 6681 4.166888 TGGATCTGGCCGCTGCTC 62.167 66.667 0.00 0.00 37.74 4.26
6062 6682 4.925861 GGATCTGGCCGCTGCTCC 62.926 72.222 0.00 0.00 37.74 4.70
6079 6699 4.544689 CGACGCTCGGCCTCTCTG 62.545 72.222 0.00 0.00 36.00 3.35
6080 6700 4.863925 GACGCTCGGCCTCTCTGC 62.864 72.222 0.00 0.00 0.00 4.26
6082 6702 4.869440 CGCTCGGCCTCTCTGCTG 62.869 72.222 0.00 0.00 39.04 4.41
6083 6703 3.456365 GCTCGGCCTCTCTGCTGA 61.456 66.667 0.00 0.00 44.17 4.26
6089 6709 4.010575 CCTCTCTGCTGAGGTCGT 57.989 61.111 19.23 0.00 46.33 4.34
6090 6710 1.806568 CCTCTCTGCTGAGGTCGTC 59.193 63.158 19.23 0.00 46.33 4.20
6091 6711 1.662438 CCTCTCTGCTGAGGTCGTCC 61.662 65.000 19.23 0.00 46.33 4.79
6092 6712 1.662438 CTCTCTGCTGAGGTCGTCCC 61.662 65.000 19.23 0.00 40.58 4.46
6093 6713 1.979155 CTCTGCTGAGGTCGTCCCA 60.979 63.158 12.54 0.00 36.70 4.37
6094 6714 1.943116 CTCTGCTGAGGTCGTCCCAG 61.943 65.000 12.54 11.04 36.70 4.45
6095 6715 2.997315 TGCTGAGGTCGTCCCAGG 60.997 66.667 15.10 0.43 34.68 4.45
6096 6716 2.997897 GCTGAGGTCGTCCCAGGT 60.998 66.667 15.10 0.00 34.68 4.00
6097 6717 3.007973 GCTGAGGTCGTCCCAGGTC 62.008 68.421 15.10 0.44 34.68 3.85
6098 6718 2.283676 TGAGGTCGTCCCAGGTCC 60.284 66.667 0.00 0.00 34.66 4.46
6099 6719 3.075641 GAGGTCGTCCCAGGTCCC 61.076 72.222 0.00 0.00 34.66 4.46
6100 6720 4.716977 AGGTCGTCCCAGGTCCCC 62.717 72.222 0.00 0.00 34.66 4.81
6102 6722 4.716977 GTCGTCCCAGGTCCCCCT 62.717 72.222 0.00 0.00 44.02 4.79
6103 6723 4.393778 TCGTCCCAGGTCCCCCTC 62.394 72.222 0.00 0.00 39.89 4.30
6105 6725 4.026357 GTCCCAGGTCCCCCTCCT 62.026 72.222 0.00 0.00 39.89 3.69
6109 6729 2.203998 CAGGTCCCCCTCCTGTGT 60.204 66.667 4.06 0.00 45.09 3.72
6110 6730 1.847968 CAGGTCCCCCTCCTGTGTT 60.848 63.158 4.06 0.00 45.09 3.32
6111 6731 1.539124 AGGTCCCCCTCCTGTGTTC 60.539 63.158 0.00 0.00 35.62 3.18
6112 6732 2.603652 GGTCCCCCTCCTGTGTTCC 61.604 68.421 0.00 0.00 0.00 3.62
6113 6733 1.539124 GTCCCCCTCCTGTGTTCCT 60.539 63.158 0.00 0.00 0.00 3.36
6114 6734 1.134438 GTCCCCCTCCTGTGTTCCTT 61.134 60.000 0.00 0.00 0.00 3.36
6115 6735 0.840722 TCCCCCTCCTGTGTTCCTTC 60.841 60.000 0.00 0.00 0.00 3.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 1.457009 CCCTCTCCTGTAGCCGTAGC 61.457 65.000 0.00 0.00 40.32 3.58
22 23 1.455217 GCCCTCTCCTGTAGCCGTA 60.455 63.158 0.00 0.00 0.00 4.02
26 27 1.050988 TGGATGCCCTCTCCTGTAGC 61.051 60.000 0.00 0.00 33.69 3.58
27 28 1.139853 GTTGGATGCCCTCTCCTGTAG 59.860 57.143 0.00 0.00 33.69 2.74
28 29 1.204146 GTTGGATGCCCTCTCCTGTA 58.796 55.000 0.00 0.00 33.69 2.74
29 30 1.903877 CGTTGGATGCCCTCTCCTGT 61.904 60.000 0.00 0.00 33.69 4.00
30 31 1.153289 CGTTGGATGCCCTCTCCTG 60.153 63.158 0.00 0.00 33.69 3.86
31 32 1.306141 TCGTTGGATGCCCTCTCCT 60.306 57.895 0.00 0.00 33.69 3.69
32 33 1.144936 CTCGTTGGATGCCCTCTCC 59.855 63.158 0.00 0.00 0.00 3.71
65 66 0.251121 TCAGCCAGCCCAATTTTCGA 60.251 50.000 0.00 0.00 0.00 3.71
78 79 2.187685 CTATGCGCCAGTCAGCCA 59.812 61.111 4.18 0.00 0.00 4.75
122 126 7.569297 CAGCAACGCGGTAGATTATTTTATTA 58.431 34.615 12.47 0.00 0.00 0.98
130 134 0.108567 TGCAGCAACGCGGTAGATTA 60.109 50.000 12.47 0.00 33.35 1.75
136 140 1.661197 CATTTTGCAGCAACGCGGT 60.661 52.632 12.47 0.00 33.35 5.68
204 208 6.767524 AGGCACTACTAGTATATCTCATGC 57.232 41.667 2.33 5.33 36.02 4.06
261 267 2.874086 TGCGAGAATAATACGGTCGAGA 59.126 45.455 0.00 0.00 32.32 4.04
269 275 8.544409 ACGAACGATATATGCGAGAATAATAC 57.456 34.615 0.14 0.00 0.00 1.89
279 285 5.173312 ACTTTGAAGACGAACGATATATGCG 59.827 40.000 0.14 0.00 0.00 4.73
330 371 2.167693 TGCTTACGGTATCTGGTTCCTG 59.832 50.000 0.00 0.00 0.00 3.86
332 373 2.822764 CTGCTTACGGTATCTGGTTCC 58.177 52.381 0.00 0.00 0.00 3.62
345 387 3.923017 ACCATTTTCAGTGCTGCTTAC 57.077 42.857 0.00 0.00 0.00 2.34
346 388 4.651778 AGTACCATTTTCAGTGCTGCTTA 58.348 39.130 0.00 0.00 0.00 3.09
354 396 3.326880 ACGGAGGAAGTACCATTTTCAGT 59.673 43.478 0.00 0.00 42.04 3.41
361 403 3.097342 AGTGTACGGAGGAAGTACCAT 57.903 47.619 4.37 0.00 42.63 3.55
362 404 2.592102 AGTGTACGGAGGAAGTACCA 57.408 50.000 4.37 0.00 42.63 3.25
366 408 7.924947 GCTTTTATATTAGTGTACGGAGGAAGT 59.075 37.037 0.00 0.00 0.00 3.01
367 409 7.114529 CGCTTTTATATTAGTGTACGGAGGAAG 59.885 40.741 0.00 0.00 0.00 3.46
368 410 6.919662 CGCTTTTATATTAGTGTACGGAGGAA 59.080 38.462 0.00 0.00 0.00 3.36
370 412 6.211515 ACGCTTTTATATTAGTGTACGGAGG 58.788 40.000 0.00 0.00 33.62 4.30
371 413 7.689953 AACGCTTTTATATTAGTGTACGGAG 57.310 36.000 0.00 0.00 34.24 4.63
372 414 9.236691 CTAAACGCTTTTATATTAGTGTACGGA 57.763 33.333 0.00 0.00 34.24 4.69
373 415 9.236691 TCTAAACGCTTTTATATTAGTGTACGG 57.763 33.333 0.00 0.00 34.24 4.02
377 419 8.876790 GTGGTCTAAACGCTTTTATATTAGTGT 58.123 33.333 0.00 0.00 36.72 3.55
378 420 9.095065 AGTGGTCTAAACGCTTTTATATTAGTG 57.905 33.333 0.00 0.00 0.00 2.74
382 424 9.609346 ATGTAGTGGTCTAAACGCTTTTATATT 57.391 29.630 0.00 0.00 0.00 1.28
383 425 9.609346 AATGTAGTGGTCTAAACGCTTTTATAT 57.391 29.630 0.00 0.00 0.00 0.86
385 427 7.916914 AATGTAGTGGTCTAAACGCTTTTAT 57.083 32.000 0.00 0.00 0.00 1.40
386 428 8.830201 TTAATGTAGTGGTCTAAACGCTTTTA 57.170 30.769 0.00 0.00 0.00 1.52
387 429 7.733402 TTAATGTAGTGGTCTAAACGCTTTT 57.267 32.000 0.00 0.00 0.00 2.27
388 430 7.604927 TCATTAATGTAGTGGTCTAAACGCTTT 59.395 33.333 14.97 0.00 0.00 3.51
389 431 7.101054 TCATTAATGTAGTGGTCTAAACGCTT 58.899 34.615 14.97 0.00 0.00 4.68
390 432 6.636705 TCATTAATGTAGTGGTCTAAACGCT 58.363 36.000 14.97 0.00 0.00 5.07
391 433 6.897259 TCATTAATGTAGTGGTCTAAACGC 57.103 37.500 14.97 0.00 0.00 4.84
392 434 8.873215 AGATCATTAATGTAGTGGTCTAAACG 57.127 34.615 14.97 0.00 34.56 3.60
430 472 9.817809 CACTGCTCCTTCTGTAAACTAATATAA 57.182 33.333 0.00 0.00 0.00 0.98
431 473 9.197306 TCACTGCTCCTTCTGTAAACTAATATA 57.803 33.333 0.00 0.00 0.00 0.86
432 474 8.079211 TCACTGCTCCTTCTGTAAACTAATAT 57.921 34.615 0.00 0.00 0.00 1.28
433 475 7.476540 TCACTGCTCCTTCTGTAAACTAATA 57.523 36.000 0.00 0.00 0.00 0.98
434 476 6.360370 TCACTGCTCCTTCTGTAAACTAAT 57.640 37.500 0.00 0.00 0.00 1.73
435 477 5.801531 TCACTGCTCCTTCTGTAAACTAA 57.198 39.130 0.00 0.00 0.00 2.24
436 478 5.717178 AGATCACTGCTCCTTCTGTAAACTA 59.283 40.000 0.00 0.00 0.00 2.24
437 479 4.530161 AGATCACTGCTCCTTCTGTAAACT 59.470 41.667 0.00 0.00 0.00 2.66
438 480 4.826556 AGATCACTGCTCCTTCTGTAAAC 58.173 43.478 0.00 0.00 0.00 2.01
439 481 6.605471 TTAGATCACTGCTCCTTCTGTAAA 57.395 37.500 0.00 0.00 0.00 2.01
440 482 6.398918 GTTTAGATCACTGCTCCTTCTGTAA 58.601 40.000 0.00 0.00 0.00 2.41
441 483 5.393135 CGTTTAGATCACTGCTCCTTCTGTA 60.393 44.000 0.00 0.00 0.00 2.74
442 484 4.619394 CGTTTAGATCACTGCTCCTTCTGT 60.619 45.833 0.00 0.00 0.00 3.41
443 485 3.862267 CGTTTAGATCACTGCTCCTTCTG 59.138 47.826 0.00 0.00 0.00 3.02
444 486 3.677424 GCGTTTAGATCACTGCTCCTTCT 60.677 47.826 0.00 0.00 0.00 2.85
445 487 2.605366 GCGTTTAGATCACTGCTCCTTC 59.395 50.000 0.00 0.00 0.00 3.46
446 488 2.234908 AGCGTTTAGATCACTGCTCCTT 59.765 45.455 0.00 0.00 0.00 3.36
447 489 1.827969 AGCGTTTAGATCACTGCTCCT 59.172 47.619 0.00 0.00 0.00 3.69
448 490 2.197577 GAGCGTTTAGATCACTGCTCC 58.802 52.381 11.89 0.00 42.17 4.70
449 491 3.157932 AGAGCGTTTAGATCACTGCTC 57.842 47.619 13.98 13.98 46.88 4.26
450 492 3.601443 AAGAGCGTTTAGATCACTGCT 57.399 42.857 0.00 0.00 37.82 4.24
451 493 7.644986 AATATAAGAGCGTTTAGATCACTGC 57.355 36.000 0.00 0.00 37.82 4.40
484 526 9.901172 TTCTTTTCTTTTTACTACTCCTTCTGT 57.099 29.630 0.00 0.00 0.00 3.41
503 545 9.750125 TTTCTTTTGCCTCTAGAAATTCTTTTC 57.250 29.630 0.00 0.00 41.34 2.29
543 586 5.335127 CCGATGAATGAATCTGTTTTGACC 58.665 41.667 0.00 0.00 0.00 4.02
550 594 1.935873 CACGCCGATGAATGAATCTGT 59.064 47.619 0.00 0.00 0.00 3.41
612 916 1.014399 CGCTCGCTCGTGAAATTCG 60.014 57.895 0.00 0.00 0.00 3.34
613 917 1.345176 CCGCTCGCTCGTGAAATTC 59.655 57.895 0.00 0.00 0.00 2.17
637 941 3.343788 GAGGTCCTCGTGCCGACTG 62.344 68.421 2.28 0.00 0.00 3.51
638 942 3.063084 GAGGTCCTCGTGCCGACT 61.063 66.667 2.28 0.00 0.00 4.18
639 943 4.131088 GGAGGTCCTCGTGCCGAC 62.131 72.222 12.91 0.00 0.00 4.79
687 991 2.505118 GCGACTCGTGTCTCTGGC 60.505 66.667 15.02 7.60 40.86 4.85
711 1015 0.032952 CGGGGAAGCGGAATATTCGA 59.967 55.000 9.32 0.00 0.00 3.71
753 1057 4.382320 TTAGCCCACGTGGACGGC 62.382 66.667 36.07 28.42 44.95 5.68
777 1081 0.683179 GCACTATTGGGGGTTGGACC 60.683 60.000 0.00 0.00 37.60 4.46
779 1083 1.301623 CGCACTATTGGGGGTTGGA 59.698 57.895 0.00 0.00 31.98 3.53
786 1090 1.455383 GAATGCCCCGCACTATTGGG 61.455 60.000 0.00 0.00 43.04 4.12
787 1091 0.751277 TGAATGCCCCGCACTATTGG 60.751 55.000 0.00 0.00 43.04 3.16
788 1092 0.664761 CTGAATGCCCCGCACTATTG 59.335 55.000 0.00 0.00 43.04 1.90
789 1093 0.466189 CCTGAATGCCCCGCACTATT 60.466 55.000 0.00 0.00 43.04 1.73
790 1094 1.149174 CCTGAATGCCCCGCACTAT 59.851 57.895 0.00 0.00 43.04 2.12
791 1095 0.978667 TACCTGAATGCCCCGCACTA 60.979 55.000 0.00 0.00 43.04 2.74
803 1107 1.681076 GCCGGGGAAAGTACCTGAA 59.319 57.895 2.18 0.00 36.43 3.02
806 1110 3.013327 GGGCCGGGGAAAGTACCT 61.013 66.667 2.18 0.00 0.00 3.08
894 1202 2.283173 AAAGCGGCAAAGGGAGGG 60.283 61.111 1.45 0.00 0.00 4.30
896 1204 0.890683 AATGAAAGCGGCAAAGGGAG 59.109 50.000 1.45 0.00 0.00 4.30
897 1205 0.602562 CAATGAAAGCGGCAAAGGGA 59.397 50.000 1.45 0.00 0.00 4.20
898 1206 0.318120 ACAATGAAAGCGGCAAAGGG 59.682 50.000 1.45 0.00 0.00 3.95
899 1207 2.061028 GAACAATGAAAGCGGCAAAGG 58.939 47.619 1.45 0.00 0.00 3.11
900 1208 2.061028 GGAACAATGAAAGCGGCAAAG 58.939 47.619 1.45 0.00 0.00 2.77
901 1209 1.270041 GGGAACAATGAAAGCGGCAAA 60.270 47.619 1.45 0.00 0.00 3.68
902 1210 0.316841 GGGAACAATGAAAGCGGCAA 59.683 50.000 1.45 0.00 0.00 4.52
903 1211 1.531739 GGGGAACAATGAAAGCGGCA 61.532 55.000 1.45 0.00 0.00 5.69
904 1212 1.215382 GGGGAACAATGAAAGCGGC 59.785 57.895 0.00 0.00 0.00 6.53
905 1213 0.811281 GAGGGGAACAATGAAAGCGG 59.189 55.000 0.00 0.00 0.00 5.52
906 1214 0.811281 GGAGGGGAACAATGAAAGCG 59.189 55.000 0.00 0.00 0.00 4.68
943 1251 3.839432 CCTCCCCTTCTCCGTCGC 61.839 72.222 0.00 0.00 0.00 5.19
947 1255 1.001760 TTCCTCCTCCCCTTCTCCG 59.998 63.158 0.00 0.00 0.00 4.63
948 1256 0.340208 TCTTCCTCCTCCCCTTCTCC 59.660 60.000 0.00 0.00 0.00 3.71
949 1257 2.115427 CTTCTTCCTCCTCCCCTTCTC 58.885 57.143 0.00 0.00 0.00 2.87
951 1259 0.544223 GCTTCTTCCTCCTCCCCTTC 59.456 60.000 0.00 0.00 0.00 3.46
952 1260 0.178861 TGCTTCTTCCTCCTCCCCTT 60.179 55.000 0.00 0.00 0.00 3.95
953 1261 0.178861 TTGCTTCTTCCTCCTCCCCT 60.179 55.000 0.00 0.00 0.00 4.79
954 1262 0.698818 TTTGCTTCTTCCTCCTCCCC 59.301 55.000 0.00 0.00 0.00 4.81
955 1263 1.952839 GCTTTGCTTCTTCCTCCTCCC 60.953 57.143 0.00 0.00 0.00 4.30
1011 1333 1.377536 GCTCAATGTCAAGAGGGAGC 58.622 55.000 0.00 0.00 40.63 4.70
1020 1342 2.609299 TCCCCGGGCTCAATGTCA 60.609 61.111 17.73 0.00 0.00 3.58
1152 1484 1.152839 GCCTAGAGGAGACGAGCCT 60.153 63.158 0.00 0.00 38.81 4.58
1155 1487 0.462225 TGACGCCTAGAGGAGACGAG 60.462 60.000 6.29 0.00 38.45 4.18
1189 1521 4.452733 GGCCGCGACCTAACTGCT 62.453 66.667 8.23 0.00 0.00 4.24
1190 1522 4.752879 TGGCCGCGACCTAACTGC 62.753 66.667 14.09 1.57 0.00 4.40
1191 1523 2.298158 ATCTGGCCGCGACCTAACTG 62.298 60.000 14.09 0.00 0.00 3.16
1208 1545 2.678471 TAAACCTCCGAACGGGAATC 57.322 50.000 13.29 0.00 46.61 2.52
1214 1551 4.181578 ACAGATTGATAAACCTCCGAACG 58.818 43.478 0.00 0.00 0.00 3.95
1218 1555 6.204882 GGGAATAACAGATTGATAAACCTCCG 59.795 42.308 0.00 0.00 0.00 4.63
1227 1564 7.067494 GCAGTAACAAGGGAATAACAGATTGAT 59.933 37.037 0.00 0.00 0.00 2.57
1228 1565 6.374333 GCAGTAACAAGGGAATAACAGATTGA 59.626 38.462 0.00 0.00 0.00 2.57
1229 1566 6.404734 GGCAGTAACAAGGGAATAACAGATTG 60.405 42.308 0.00 0.00 0.00 2.67
1242 1579 1.698506 TGTTTGGGGCAGTAACAAGG 58.301 50.000 0.00 0.00 0.00 3.61
1247 1584 3.818295 AACCTATGTTTGGGGCAGTAA 57.182 42.857 0.00 0.00 0.00 2.24
1249 1586 2.694616 AAACCTATGTTTGGGGCAGT 57.305 45.000 0.00 0.00 42.97 4.40
1255 1592 3.624410 GGCGTACCTAAACCTATGTTTGG 59.376 47.826 6.40 3.56 44.27 3.28
1256 1593 4.255301 TGGCGTACCTAAACCTATGTTTG 58.745 43.478 6.40 0.00 44.27 2.93
1257 1594 4.556592 TGGCGTACCTAAACCTATGTTT 57.443 40.909 1.66 1.66 46.22 2.83
1258 1595 4.556592 TTGGCGTACCTAAACCTATGTT 57.443 40.909 0.00 0.00 36.63 2.71
1259 1596 4.556592 TTTGGCGTACCTAAACCTATGT 57.443 40.909 0.00 0.00 36.63 2.29
1262 1599 3.195396 ACGATTTGGCGTACCTAAACCTA 59.805 43.478 0.00 0.00 43.61 3.08
1284 1624 1.722011 GCTACAGCGAAAGTAAGCCA 58.278 50.000 0.00 0.00 0.00 4.75
1299 1639 3.075884 CCTCGAGATGGGTAGTAGCTAC 58.924 54.545 15.71 16.43 36.33 3.58
1300 1640 2.552591 GCCTCGAGATGGGTAGTAGCTA 60.553 54.545 15.71 0.00 0.00 3.32
1301 1641 1.820090 GCCTCGAGATGGGTAGTAGCT 60.820 57.143 15.71 0.00 0.00 3.32
1302 1642 0.599060 GCCTCGAGATGGGTAGTAGC 59.401 60.000 15.71 0.02 0.00 3.58
1303 1643 1.249407 GGCCTCGAGATGGGTAGTAG 58.751 60.000 15.71 0.00 0.00 2.57
1304 1644 0.536687 CGGCCTCGAGATGGGTAGTA 60.537 60.000 15.71 0.00 39.00 1.82
1305 1645 1.828660 CGGCCTCGAGATGGGTAGT 60.829 63.158 15.71 0.00 39.00 2.73
1306 1646 3.043419 CGGCCTCGAGATGGGTAG 58.957 66.667 15.71 0.00 39.00 3.18
1307 1647 3.224324 GCGGCCTCGAGATGGGTA 61.224 66.667 15.71 0.00 39.00 3.69
1329 1673 3.788766 CCCGTTTCCGCTCGCTTG 61.789 66.667 0.00 0.00 0.00 4.01
1335 1679 1.838073 AAGATGACCCCGTTTCCGCT 61.838 55.000 0.00 0.00 0.00 5.52
1336 1680 1.376812 AAGATGACCCCGTTTCCGC 60.377 57.895 0.00 0.00 0.00 5.54
1340 1684 1.613437 CAAAGCAAGATGACCCCGTTT 59.387 47.619 0.00 0.00 0.00 3.60
1343 1687 0.962356 AGCAAAGCAAGATGACCCCG 60.962 55.000 0.00 0.00 0.00 5.73
1349 1693 7.977853 ACCAAAGAATAATAGCAAAGCAAGATG 59.022 33.333 0.00 0.00 0.00 2.90
1449 1814 9.924650 CCACACAAAAATCTTAGTACTAGTAGT 57.075 33.333 14.57 14.57 0.00 2.73
1450 1815 9.924650 ACCACACAAAAATCTTAGTACTAGTAG 57.075 33.333 1.87 0.00 0.00 2.57
1453 1818 9.490379 AGAACCACACAAAAATCTTAGTACTAG 57.510 33.333 2.23 0.00 0.00 2.57
1461 1826 4.881850 AGACGAGAACCACACAAAAATCTT 59.118 37.500 0.00 0.00 0.00 2.40
1475 1840 1.927895 CCAGTATGCCAGACGAGAAC 58.072 55.000 0.00 0.00 31.97 3.01
1508 1879 4.340246 TGAGCAGCAGCAGGTGGG 62.340 66.667 10.46 0.00 45.49 4.61
1509 1880 3.054503 GTGAGCAGCAGCAGGTGG 61.055 66.667 10.46 0.00 45.49 4.61
1510 1881 2.032223 AGTGAGCAGCAGCAGGTG 59.968 61.111 3.17 3.63 45.49 4.00
1511 1882 2.215625 AGAGTGAGCAGCAGCAGGT 61.216 57.895 3.17 0.00 45.49 4.00
1512 1883 1.742140 CAGAGTGAGCAGCAGCAGG 60.742 63.158 3.17 0.00 45.49 4.85
1513 1884 2.392181 GCAGAGTGAGCAGCAGCAG 61.392 63.158 3.17 0.00 45.49 4.24
1514 1885 2.358369 GCAGAGTGAGCAGCAGCA 60.358 61.111 3.17 0.00 45.49 4.41
1515 1886 2.047083 AGCAGAGTGAGCAGCAGC 60.047 61.111 0.00 0.00 42.56 5.25
1516 1887 1.448189 GGAGCAGAGTGAGCAGCAG 60.448 63.158 0.00 0.00 0.00 4.24
1517 1888 1.912264 AGGAGCAGAGTGAGCAGCA 60.912 57.895 0.00 0.00 0.00 4.41
1518 1889 1.448189 CAGGAGCAGAGTGAGCAGC 60.448 63.158 0.00 0.00 0.00 5.25
1519 1890 1.448189 GCAGGAGCAGAGTGAGCAG 60.448 63.158 0.00 0.00 41.58 4.24
1520 1891 2.661399 GCAGGAGCAGAGTGAGCA 59.339 61.111 0.00 0.00 41.58 4.26
1542 1913 4.101448 AGACAGCGGTGGATGGCC 62.101 66.667 20.20 0.00 38.77 5.36
1553 1924 4.008933 ACCGCCCAGACAGACAGC 62.009 66.667 0.00 0.00 0.00 4.40
1605 1976 2.947652 CAGCTCTAATCAATGGTGGGTG 59.052 50.000 0.00 0.00 0.00 4.61
1686 2057 3.507162 TCCGAATGCATGGGTCATATT 57.493 42.857 14.75 0.00 0.00 1.28
1708 2079 4.836825 TCTTTGCTGTCATTCCTCCTAAG 58.163 43.478 0.00 0.00 0.00 2.18
1777 2148 8.286191 AGGATGAGGAAAAAGATGACATAAAC 57.714 34.615 0.00 0.00 0.00 2.01
1785 2156 3.878778 ACCGAGGATGAGGAAAAAGATG 58.121 45.455 0.00 0.00 0.00 2.90
1789 2160 3.408634 GACAACCGAGGATGAGGAAAAA 58.591 45.455 6.39 0.00 0.00 1.94
1800 2171 1.607148 GGAAACTTTGGACAACCGAGG 59.393 52.381 0.00 0.00 39.42 4.63
1806 2177 6.460399 CCAAGATTTACGGAAACTTTGGACAA 60.460 38.462 23.68 0.00 40.52 3.18
1811 2182 6.419710 GGAAACCAAGATTTACGGAAACTTTG 59.580 38.462 0.00 3.19 0.00 2.77
1822 2197 9.838339 TGCAATTTTTAAGGAAACCAAGATTTA 57.162 25.926 0.00 0.00 0.00 1.40
1829 2204 6.825610 AGATGTGCAATTTTTAAGGAAACCA 58.174 32.000 0.00 0.00 0.00 3.67
1830 2205 6.928492 TGAGATGTGCAATTTTTAAGGAAACC 59.072 34.615 0.00 0.00 0.00 3.27
1844 2219 7.105588 ACTTACAATGTCTATGAGATGTGCAA 58.894 34.615 0.00 0.00 0.00 4.08
1847 2223 7.907045 GCAAACTTACAATGTCTATGAGATGTG 59.093 37.037 0.00 0.00 0.00 3.21
1870 2260 6.366604 CAGATACATGTTTGCTGAAATTGCAA 59.633 34.615 2.30 0.00 46.90 4.08
1875 2265 5.184479 ACTGCAGATACATGTTTGCTGAAAT 59.816 36.000 27.24 9.67 38.40 2.17
1879 2269 4.155462 AGAACTGCAGATACATGTTTGCTG 59.845 41.667 23.35 22.76 40.12 4.41
1889 2283 9.319143 ACATATCAAACTAAGAACTGCAGATAC 57.681 33.333 23.35 10.88 0.00 2.24
1901 2295 5.126067 CCTCACCCCACATATCAAACTAAG 58.874 45.833 0.00 0.00 0.00 2.18
1934 2328 3.931907 AGATCCGACCATTTTCATCCA 57.068 42.857 0.00 0.00 0.00 3.41
1935 2329 3.316308 CCAAGATCCGACCATTTTCATCC 59.684 47.826 0.00 0.00 0.00 3.51
1948 2342 1.452108 GCCCTTGGACCAAGATCCG 60.452 63.158 31.94 16.68 43.42 4.18
1953 2347 3.006859 CCTTTTTAAGCCCTTGGACCAAG 59.993 47.826 25.05 25.05 40.75 3.61
1957 2351 3.005472 GTCACCTTTTTAAGCCCTTGGAC 59.995 47.826 0.00 0.00 0.00 4.02
1966 2360 6.147985 GCTAGAACCTCAGTCACCTTTTTAAG 59.852 42.308 0.00 0.00 0.00 1.85
1970 2364 3.391296 TGCTAGAACCTCAGTCACCTTTT 59.609 43.478 0.00 0.00 0.00 2.27
1988 2382 6.205464 GCTCATAAGTTGCCTGAATTATGCTA 59.795 38.462 6.98 0.00 36.18 3.49
1991 2385 6.381481 TGCTCATAAGTTGCCTGAATTATG 57.619 37.500 5.97 5.97 37.10 1.90
2063 2462 1.737201 GGAACCCAACCAACAACCG 59.263 57.895 0.00 0.00 0.00 4.44
2087 2486 0.038455 TCAAAACCATGGTACCCGGG 59.962 55.000 22.25 22.25 0.00 5.73
2090 2489 5.712917 TGTTATCTTCAAAACCATGGTACCC 59.287 40.000 20.12 0.00 0.00 3.69
2095 2499 5.243730 ACACCTGTTATCTTCAAAACCATGG 59.756 40.000 11.19 11.19 0.00 3.66
2610 3110 2.044860 CTCGCATATTCGTCGTCCTTC 58.955 52.381 0.00 0.00 0.00 3.46
2810 3313 7.373493 AGATTTCCTTTTGCACAGAAAGTATG 58.627 34.615 8.22 0.00 33.33 2.39
2999 3506 1.561643 ATGGACCACGACTGACTGAT 58.438 50.000 0.00 0.00 0.00 2.90
3001 3508 2.169832 AAATGGACCACGACTGACTG 57.830 50.000 0.00 0.00 0.00 3.51
3085 3595 5.039333 GTGTGATAATGGCATCAAGCTTTC 58.961 41.667 0.00 0.00 44.79 2.62
3123 3634 8.842358 TCAAGTATAGTAAAGGACAACCAAAG 57.158 34.615 0.00 0.00 38.94 2.77
3176 3694 7.033185 ACATGTTCAACAAAGACCAAAAGTAC 58.967 34.615 0.00 0.00 0.00 2.73
3415 3941 5.865552 GCACAACATAGCTCAAAAACATGAT 59.134 36.000 0.00 0.00 0.00 2.45
3474 4004 5.409643 ACAACTCAACTCAAAATGTCTCG 57.590 39.130 0.00 0.00 0.00 4.04
3596 4137 3.674997 GACAAGGACAAGAGCCAATACA 58.325 45.455 0.00 0.00 0.00 2.29
3614 4155 0.391661 GGAGAGCCAAAGATGCGACA 60.392 55.000 0.00 0.00 0.00 4.35
3852 4397 5.177511 GCCTGCATTAGAAAAAGGAACAAAC 59.822 40.000 0.00 0.00 0.00 2.93
4052 4600 0.916086 TCAGGTACCATTCCGGCAAT 59.084 50.000 15.94 0.00 39.03 3.56
4117 4666 9.685276 TGATACTCAATTGACCAAATCACTATT 57.315 29.630 3.38 0.00 36.92 1.73
4121 4670 9.643693 AAAATGATACTCAATTGACCAAATCAC 57.356 29.630 3.38 0.00 36.92 3.06
4196 4750 5.072736 AGGGCATTAATCAGATGACAGATGA 59.927 40.000 0.00 0.00 34.09 2.92
4262 4828 5.841957 ATAATGCTCCATTGTTGAACTCC 57.158 39.130 0.00 0.00 35.54 3.85
4313 4881 9.890629 AACTTATCAAGAGCACAAATGTATAGA 57.109 29.630 0.00 0.00 0.00 1.98
4314 4882 9.926751 CAACTTATCAAGAGCACAAATGTATAG 57.073 33.333 0.00 0.00 0.00 1.31
4315 4883 8.892723 CCAACTTATCAAGAGCACAAATGTATA 58.107 33.333 0.00 0.00 0.00 1.47
4316 4884 7.611467 TCCAACTTATCAAGAGCACAAATGTAT 59.389 33.333 0.00 0.00 0.00 2.29
4454 5026 0.454196 TGTATGAGCGCTTGCGTCTA 59.546 50.000 13.26 3.62 45.69 2.59
4463 5035 6.486248 TGAAAAGACAAATATGTATGAGCGC 58.514 36.000 0.00 0.00 40.74 5.92
4586 5169 3.719268 ACTGTACCATCAGATTTGGCA 57.281 42.857 0.65 0.00 37.81 4.92
4587 5170 4.702131 AGAAACTGTACCATCAGATTTGGC 59.298 41.667 0.65 0.00 37.81 4.52
4588 5171 6.316390 GGTAGAAACTGTACCATCAGATTTGG 59.684 42.308 0.65 0.00 39.94 3.28
4589 5172 6.878923 TGGTAGAAACTGTACCATCAGATTTG 59.121 38.462 0.00 0.00 44.14 2.32
4590 5173 7.016153 TGGTAGAAACTGTACCATCAGATTT 57.984 36.000 0.00 0.00 44.14 2.17
4591 5174 6.620877 TGGTAGAAACTGTACCATCAGATT 57.379 37.500 0.00 0.00 44.14 2.40
4598 5181 5.747342 ACTTGTTTGGTAGAAACTGTACCA 58.253 37.500 0.00 0.00 46.73 3.25
4599 5182 5.237996 GGACTTGTTTGGTAGAAACTGTACC 59.762 44.000 0.00 0.00 40.50 3.34
4600 5183 5.237996 GGGACTTGTTTGGTAGAAACTGTAC 59.762 44.000 0.00 0.00 0.00 2.90
4601 5184 5.104444 TGGGACTTGTTTGGTAGAAACTGTA 60.104 40.000 0.00 0.00 0.00 2.74
4602 5185 4.204799 GGGACTTGTTTGGTAGAAACTGT 58.795 43.478 0.00 0.00 0.00 3.55
4603 5186 4.204012 TGGGACTTGTTTGGTAGAAACTG 58.796 43.478 0.00 0.00 0.00 3.16
4604 5187 4.513406 TGGGACTTGTTTGGTAGAAACT 57.487 40.909 0.00 0.00 0.00 2.66
4605 5188 5.585820 TTTGGGACTTGTTTGGTAGAAAC 57.414 39.130 0.00 0.00 0.00 2.78
4606 5189 7.064229 AGTATTTGGGACTTGTTTGGTAGAAA 58.936 34.615 0.00 0.00 0.00 2.52
4607 5190 6.607019 AGTATTTGGGACTTGTTTGGTAGAA 58.393 36.000 0.00 0.00 0.00 2.10
4608 5191 6.195600 AGTATTTGGGACTTGTTTGGTAGA 57.804 37.500 0.00 0.00 0.00 2.59
4609 5192 7.166167 ACTAGTATTTGGGACTTGTTTGGTAG 58.834 38.462 0.00 0.00 30.19 3.18
4785 5375 1.336332 ACGTAACTGCTCTGCACTCAG 60.336 52.381 0.00 4.17 41.67 3.35
5118 5729 3.194861 CGTTCCCGATGAATACACACAT 58.805 45.455 0.00 0.00 34.90 3.21
5119 5730 2.612604 CGTTCCCGATGAATACACACA 58.387 47.619 0.00 0.00 34.90 3.72
5120 5731 1.931172 CCGTTCCCGATGAATACACAC 59.069 52.381 0.00 0.00 34.90 3.82
5121 5732 1.826096 TCCGTTCCCGATGAATACACA 59.174 47.619 0.00 0.00 34.90 3.72
5122 5733 2.589798 TCCGTTCCCGATGAATACAC 57.410 50.000 0.00 0.00 34.90 2.90
5123 5734 3.830744 AATCCGTTCCCGATGAATACA 57.169 42.857 0.00 0.00 34.90 2.29
5124 5735 4.243270 CCTAATCCGTTCCCGATGAATAC 58.757 47.826 0.00 0.00 34.90 1.89
5137 5750 1.831736 CCTCACTTCACCCTAATCCGT 59.168 52.381 0.00 0.00 0.00 4.69
5146 5759 2.104281 ACTAACACCACCTCACTTCACC 59.896 50.000 0.00 0.00 0.00 4.02
5325 5945 1.339610 CAAATCTCCCGCCAACAACAA 59.660 47.619 0.00 0.00 0.00 2.83
5360 5980 3.157087 GAGAAGGCCAAATTTCCAGTCA 58.843 45.455 5.01 0.00 0.00 3.41
5621 6241 2.877154 TCCCCTTCTCCTGCTTATCT 57.123 50.000 0.00 0.00 0.00 1.98
5641 6261 0.110678 TCACTCACTCGTCACTCCCT 59.889 55.000 0.00 0.00 0.00 4.20
5644 6264 2.290916 TGAACTCACTCACTCGTCACTC 59.709 50.000 0.00 0.00 0.00 3.51
5648 6268 2.473235 GCTTTGAACTCACTCACTCGTC 59.527 50.000 0.00 0.00 0.00 4.20
5649 6269 2.159099 TGCTTTGAACTCACTCACTCGT 60.159 45.455 0.00 0.00 0.00 4.18
5650 6270 2.473816 TGCTTTGAACTCACTCACTCG 58.526 47.619 0.00 0.00 0.00 4.18
5651 6271 5.429957 AATTGCTTTGAACTCACTCACTC 57.570 39.130 0.00 0.00 0.00 3.51
5652 6272 5.239525 GGTAATTGCTTTGAACTCACTCACT 59.760 40.000 0.00 0.00 0.00 3.41
5653 6273 5.008613 TGGTAATTGCTTTGAACTCACTCAC 59.991 40.000 0.00 0.00 0.00 3.51
5654 6274 5.129634 TGGTAATTGCTTTGAACTCACTCA 58.870 37.500 0.00 0.00 0.00 3.41
5672 6292 2.438763 TCGAAAGTGGGTTTCCTGGTAA 59.561 45.455 0.00 0.00 41.53 2.85
5676 6296 3.555956 CGATATCGAAAGTGGGTTTCCTG 59.444 47.826 20.50 0.00 41.53 3.86
5755 6375 5.109210 TGTTTCTGGTGATGTAATAGAGCG 58.891 41.667 0.00 0.00 0.00 5.03
5758 6378 7.194112 TGGATGTTTCTGGTGATGTAATAGA 57.806 36.000 0.00 0.00 0.00 1.98
5762 6382 5.630121 AGTTGGATGTTTCTGGTGATGTAA 58.370 37.500 0.00 0.00 0.00 2.41
5774 6394 9.077885 TGCTTCTCTTTTATTAGTTGGATGTTT 57.922 29.630 0.00 0.00 0.00 2.83
5788 6408 3.587061 TGTCCCCTGATGCTTCTCTTTTA 59.413 43.478 0.88 0.00 0.00 1.52
5811 6431 0.398318 GCTGGTCTCACTCCTGGTTT 59.602 55.000 0.00 0.00 0.00 3.27
5817 6437 1.277557 ACAGATTGCTGGTCTCACTCC 59.722 52.381 0.00 0.00 46.60 3.85
5818 6438 2.233431 AGACAGATTGCTGGTCTCACTC 59.767 50.000 0.00 0.00 46.60 3.51
5819 6439 2.233431 GAGACAGATTGCTGGTCTCACT 59.767 50.000 14.26 4.77 46.60 3.41
5820 6440 2.028658 TGAGACAGATTGCTGGTCTCAC 60.029 50.000 17.05 0.00 44.64 3.51
5821 6441 2.028658 GTGAGACAGATTGCTGGTCTCA 60.029 50.000 17.05 17.05 45.78 3.27
5862 6482 3.114809 GCTCATCTCGTTCTCACATCAG 58.885 50.000 0.00 0.00 0.00 2.90
5863 6483 2.757314 AGCTCATCTCGTTCTCACATCA 59.243 45.455 0.00 0.00 0.00 3.07
5866 6486 1.474478 GGAGCTCATCTCGTTCTCACA 59.526 52.381 17.19 0.00 42.82 3.58
5867 6487 1.202359 GGGAGCTCATCTCGTTCTCAC 60.202 57.143 17.19 0.00 42.82 3.51
5868 6488 1.107114 GGGAGCTCATCTCGTTCTCA 58.893 55.000 17.19 0.00 42.82 3.27
5871 6491 1.646189 GTTGGGAGCTCATCTCGTTC 58.354 55.000 17.19 0.00 42.82 3.95
5872 6492 0.250513 GGTTGGGAGCTCATCTCGTT 59.749 55.000 17.19 0.00 42.82 3.85
5873 6493 1.617947 GGGTTGGGAGCTCATCTCGT 61.618 60.000 17.19 0.00 42.82 4.18
5874 6494 1.144936 GGGTTGGGAGCTCATCTCG 59.855 63.158 17.19 0.00 42.82 4.04
5875 6495 0.179936 CTGGGTTGGGAGCTCATCTC 59.820 60.000 17.19 2.94 41.15 2.75
5876 6496 1.919600 GCTGGGTTGGGAGCTCATCT 61.920 60.000 17.19 0.00 32.12 2.90
5877 6497 1.452833 GCTGGGTTGGGAGCTCATC 60.453 63.158 17.19 7.71 32.12 2.92
5878 6498 2.679716 GCTGGGTTGGGAGCTCAT 59.320 61.111 17.19 0.00 32.12 2.90
5879 6499 4.020617 CGCTGGGTTGGGAGCTCA 62.021 66.667 17.19 0.00 32.70 4.26
5880 6500 3.706373 TCGCTGGGTTGGGAGCTC 61.706 66.667 4.71 4.71 32.70 4.09
5881 6501 4.021925 GTCGCTGGGTTGGGAGCT 62.022 66.667 0.00 0.00 32.70 4.09
5883 6503 3.190738 TTGGTCGCTGGGTTGGGAG 62.191 63.158 0.00 0.00 0.00 4.30
5884 6504 3.172106 TTGGTCGCTGGGTTGGGA 61.172 61.111 0.00 0.00 0.00 4.37
5885 6505 2.672996 CTTGGTCGCTGGGTTGGG 60.673 66.667 0.00 0.00 0.00 4.12
5886 6506 3.365265 GCTTGGTCGCTGGGTTGG 61.365 66.667 0.00 0.00 0.00 3.77
5887 6507 2.281761 AGCTTGGTCGCTGGGTTG 60.282 61.111 0.00 0.00 39.16 3.77
5888 6508 2.032681 GAGCTTGGTCGCTGGGTT 59.967 61.111 0.00 0.00 41.08 4.11
5889 6509 4.021925 GGAGCTTGGTCGCTGGGT 62.022 66.667 0.00 0.00 41.08 4.51
5890 6510 3.259633 AAGGAGCTTGGTCGCTGGG 62.260 63.158 0.00 0.00 41.08 4.45
5891 6511 1.743252 GAAGGAGCTTGGTCGCTGG 60.743 63.158 0.00 0.00 41.08 4.85
5892 6512 2.097038 CGAAGGAGCTTGGTCGCTG 61.097 63.158 0.00 0.00 41.08 5.18
5893 6513 2.262915 CGAAGGAGCTTGGTCGCT 59.737 61.111 0.00 0.00 44.33 4.93
5932 6552 3.314331 AGGACTGGAGGTGTGCGG 61.314 66.667 0.00 0.00 0.00 5.69
5933 6553 2.047844 CAGGACTGGAGGTGTGCG 60.048 66.667 0.00 0.00 0.00 5.34
5934 6554 2.359230 GCAGGACTGGAGGTGTGC 60.359 66.667 1.01 0.00 0.00 4.57
5935 6555 2.177594 GAGGCAGGACTGGAGGTGTG 62.178 65.000 1.01 0.00 0.00 3.82
5936 6556 1.915769 GAGGCAGGACTGGAGGTGT 60.916 63.158 1.01 0.00 0.00 4.16
5937 6557 2.985456 GAGGCAGGACTGGAGGTG 59.015 66.667 1.01 0.00 0.00 4.00
5938 6558 2.681778 CGAGGCAGGACTGGAGGT 60.682 66.667 1.01 0.00 0.00 3.85
5939 6559 3.465403 CCGAGGCAGGACTGGAGG 61.465 72.222 1.01 0.00 0.00 4.30
5940 6560 2.363018 TCCGAGGCAGGACTGGAG 60.363 66.667 1.01 0.00 34.92 3.86
5979 6599 4.988598 AACCTGCGGGCACGACAG 62.989 66.667 15.48 19.20 44.60 3.51
5980 6600 4.980805 GAACCTGCGGGCACGACA 62.981 66.667 15.48 9.24 44.60 4.35
5991 6611 4.335647 ACCTGCGGCTGGAACCTG 62.336 66.667 29.52 5.10 0.00 4.00
5992 6612 4.021925 GACCTGCGGCTGGAACCT 62.022 66.667 29.52 9.52 0.00 3.50
5993 6613 3.553095 AAGACCTGCGGCTGGAACC 62.553 63.158 29.52 17.74 0.00 3.62
5994 6614 2.032681 AAGACCTGCGGCTGGAAC 59.967 61.111 29.52 21.30 0.00 3.62
5995 6615 2.172483 GAGAAGACCTGCGGCTGGAA 62.172 60.000 29.52 0.00 0.00 3.53
5996 6616 2.604686 AGAAGACCTGCGGCTGGA 60.605 61.111 29.52 0.00 0.00 3.86
5997 6617 2.125350 GAGAAGACCTGCGGCTGG 60.125 66.667 22.53 22.53 0.00 4.85
5998 6618 2.125350 GGAGAAGACCTGCGGCTG 60.125 66.667 0.00 0.00 0.00 4.85
5999 6619 2.217038 TTGGAGAAGACCTGCGGCT 61.217 57.895 0.00 0.00 35.80 5.52
6000 6620 2.035442 GTTGGAGAAGACCTGCGGC 61.035 63.158 0.00 0.00 35.80 6.53
6001 6621 1.376037 GGTTGGAGAAGACCTGCGG 60.376 63.158 0.00 0.00 35.80 5.69
6002 6622 0.035458 AAGGTTGGAGAAGACCTGCG 59.965 55.000 0.00 0.00 45.32 5.18
6003 6623 2.155279 GAAAGGTTGGAGAAGACCTGC 58.845 52.381 0.00 0.00 45.32 4.85
6004 6624 2.553247 GGGAAAGGTTGGAGAAGACCTG 60.553 54.545 0.00 0.00 45.32 4.00
6006 6626 1.271982 GGGGAAAGGTTGGAGAAGACC 60.272 57.143 0.00 0.00 36.15 3.85
6007 6627 1.610886 CGGGGAAAGGTTGGAGAAGAC 60.611 57.143 0.00 0.00 0.00 3.01
6008 6628 0.690762 CGGGGAAAGGTTGGAGAAGA 59.309 55.000 0.00 0.00 0.00 2.87
6009 6629 0.322546 CCGGGGAAAGGTTGGAGAAG 60.323 60.000 0.00 0.00 0.00 2.85
6010 6630 1.765074 CCGGGGAAAGGTTGGAGAA 59.235 57.895 0.00 0.00 0.00 2.87
6011 6631 2.902457 GCCGGGGAAAGGTTGGAGA 61.902 63.158 2.18 0.00 0.00 3.71
6012 6632 2.361230 GCCGGGGAAAGGTTGGAG 60.361 66.667 2.18 0.00 0.00 3.86
6013 6633 3.974293 GGCCGGGGAAAGGTTGGA 61.974 66.667 2.18 0.00 0.00 3.53
6029 6649 4.760047 CCAGAACAGGTCGGCCGG 62.760 72.222 27.83 11.94 40.50 6.13
6030 6650 2.907897 GATCCAGAACAGGTCGGCCG 62.908 65.000 22.12 22.12 40.50 6.13
6031 6651 1.153349 GATCCAGAACAGGTCGGCC 60.153 63.158 0.00 0.00 0.00 6.13
6032 6652 0.460987 CAGATCCAGAACAGGTCGGC 60.461 60.000 0.00 0.00 0.00 5.54
6033 6653 0.176680 CCAGATCCAGAACAGGTCGG 59.823 60.000 0.00 0.00 0.00 4.79
6034 6654 0.460987 GCCAGATCCAGAACAGGTCG 60.461 60.000 0.00 0.00 0.00 4.79
6035 6655 0.107459 GGCCAGATCCAGAACAGGTC 60.107 60.000 0.00 0.00 0.00 3.85
6036 6656 1.903877 CGGCCAGATCCAGAACAGGT 61.904 60.000 2.24 0.00 0.00 4.00
6037 6657 1.153289 CGGCCAGATCCAGAACAGG 60.153 63.158 2.24 0.00 0.00 4.00
6038 6658 1.817099 GCGGCCAGATCCAGAACAG 60.817 63.158 2.24 0.00 0.00 3.16
6039 6659 2.268920 GCGGCCAGATCCAGAACA 59.731 61.111 2.24 0.00 0.00 3.18
6040 6660 1.817099 CAGCGGCCAGATCCAGAAC 60.817 63.158 2.24 0.00 0.00 3.01
6041 6661 2.586245 CAGCGGCCAGATCCAGAA 59.414 61.111 2.24 0.00 0.00 3.02
6042 6662 4.166888 GCAGCGGCCAGATCCAGA 62.167 66.667 2.24 0.00 0.00 3.86
6043 6663 4.172512 AGCAGCGGCCAGATCCAG 62.173 66.667 4.82 0.00 42.56 3.86
6044 6664 4.166888 GAGCAGCGGCCAGATCCA 62.167 66.667 4.82 0.00 42.56 3.41
6045 6665 4.925861 GGAGCAGCGGCCAGATCC 62.926 72.222 4.82 10.86 42.56 3.36
6062 6682 4.544689 CAGAGAGGCCGAGCGTCG 62.545 72.222 0.00 0.00 46.28 5.12
6063 6683 4.863925 GCAGAGAGGCCGAGCGTC 62.864 72.222 0.00 9.61 42.77 5.19
6065 6685 4.869440 CAGCAGAGAGGCCGAGCG 62.869 72.222 0.00 0.00 0.00 5.03
6066 6686 3.429080 CTCAGCAGAGAGGCCGAGC 62.429 68.421 0.00 0.00 44.98 5.03
6067 6687 2.806929 CTCAGCAGAGAGGCCGAG 59.193 66.667 0.00 0.00 44.98 4.63
6073 6693 1.662438 GGGACGACCTCAGCAGAGAG 61.662 65.000 7.84 0.62 44.98 3.20
6074 6694 1.679305 GGGACGACCTCAGCAGAGA 60.679 63.158 7.84 0.00 44.98 3.10
6075 6695 1.943116 CTGGGACGACCTCAGCAGAG 61.943 65.000 3.44 0.00 41.11 3.35
6076 6696 1.979155 CTGGGACGACCTCAGCAGA 60.979 63.158 3.44 0.00 41.11 4.26
6077 6697 2.575993 CTGGGACGACCTCAGCAG 59.424 66.667 3.44 0.00 41.11 4.24
6078 6698 2.997315 CCTGGGACGACCTCAGCA 60.997 66.667 13.88 0.00 41.11 4.41
6079 6699 2.997897 ACCTGGGACGACCTCAGC 60.998 66.667 13.88 0.00 41.11 4.26
6080 6700 2.352032 GGACCTGGGACGACCTCAG 61.352 68.421 12.85 12.85 41.11 3.35
6081 6701 2.283676 GGACCTGGGACGACCTCA 60.284 66.667 3.44 0.00 41.11 3.86
6082 6702 3.075641 GGGACCTGGGACGACCTC 61.076 72.222 3.44 0.00 41.11 3.85
6095 6715 1.134438 AAGGAACACAGGAGGGGGAC 61.134 60.000 0.00 0.00 0.00 4.46
6096 6716 0.840722 GAAGGAACACAGGAGGGGGA 60.841 60.000 0.00 0.00 0.00 4.81
6097 6717 1.685820 GAAGGAACACAGGAGGGGG 59.314 63.158 0.00 0.00 0.00 5.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.