Multiple sequence alignment - TraesCS4D01G342600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G342600 chr4D 100.000 5345 0 0 1 5345 498948134 498953478 0.000000e+00 9871.0
1 TraesCS4D01G342600 chr4B 85.903 2121 100 74 2 1994 641411122 641413171 0.000000e+00 2076.0
2 TraesCS4D01G342600 chr4B 91.364 1158 45 26 3362 4487 641414697 641415831 0.000000e+00 1533.0
3 TraesCS4D01G342600 chr4B 89.912 912 38 26 4462 5345 641415843 641416728 0.000000e+00 1125.0
4 TraesCS4D01G342600 chr4B 85.801 331 25 10 2346 2657 641413622 641413949 1.110000e-86 331.0
5 TraesCS4D01G342600 chr4B 83.163 392 33 16 2949 3327 641414221 641414592 1.440000e-85 327.0
6 TraesCS4D01G342600 chr4B 86.747 249 8 6 2086 2333 641413280 641413504 2.470000e-63 254.0
7 TraesCS4D01G342600 chr5A 83.537 1968 155 75 324 2178 679737884 679739795 0.000000e+00 1683.0
8 TraesCS4D01G342600 chr5A 91.751 1091 57 14 3648 4720 679741746 679742821 0.000000e+00 1485.0
9 TraesCS4D01G342600 chr5A 84.030 263 12 11 3207 3441 679741294 679741554 5.390000e-55 226.0
10 TraesCS4D01G342600 chr5A 93.750 128 8 0 2220 2347 679739801 679739928 5.460000e-45 193.0
11 TraesCS4D01G342600 chr5A 90.511 137 12 1 60 195 679737682 679737818 4.250000e-41 180.0
12 TraesCS4D01G342600 chr5A 82.569 218 14 7 2454 2659 679740683 679740888 2.560000e-38 171.0
13 TraesCS4D01G342600 chr5A 82.911 158 10 7 2962 3102 679741080 679741237 5.620000e-25 126.0
14 TraesCS4D01G342600 chr5A 100.000 38 0 0 2 39 679725344 679725381 2.670000e-08 71.3
15 TraesCS4D01G342600 chr1A 85.876 177 20 4 1061 1233 360009515 360009690 3.290000e-42 183.0
16 TraesCS4D01G342600 chr1A 80.105 191 31 5 1790 1979 359981167 359980983 9.340000e-28 135.0
17 TraesCS4D01G342600 chr1A 77.348 181 34 5 1797 1972 62254231 62254053 3.410000e-17 100.0
18 TraesCS4D01G342600 chr1D 81.152 191 29 5 1790 1979 288540133 288540317 4.310000e-31 147.0
19 TraesCS4D01G342600 chr1D 77.401 177 33 5 1798 1969 63357378 63357552 1.230000e-16 99.0
20 TraesCS4D01G342600 chr1D 74.537 216 45 9 1049 1260 62564015 62564224 9.540000e-13 86.1
21 TraesCS4D01G342600 chr1D 88.136 59 7 0 1185 1243 62858083 62858141 2.670000e-08 71.3
22 TraesCS4D01G342600 chr5D 77.838 185 34 7 1800 1979 230505349 230505531 2.040000e-19 108.0
23 TraesCS4D01G342600 chr1B 77.966 177 32 6 1798 1969 100631361 100631535 2.630000e-18 104.0
24 TraesCS4D01G342600 chr1B 88.136 59 7 0 1185 1243 100308696 100308754 2.670000e-08 71.3
25 TraesCS4D01G342600 chr2D 77.011 174 40 0 1799 1972 560991570 560991743 3.410000e-17 100.0
26 TraesCS4D01G342600 chr2D 92.727 55 4 0 4277 4331 324046225 324046279 4.440000e-11 80.5
27 TraesCS4D01G342600 chr7A 77.714 175 28 10 1077 1247 669727872 669728039 4.410000e-16 97.1
28 TraesCS4D01G342600 chr7B 77.160 162 28 8 1090 1247 640914947 640915103 9.540000e-13 86.1
29 TraesCS4D01G342600 chr7D 76.163 172 30 10 1080 1247 577594881 577595045 4.440000e-11 80.5
30 TraesCS4D01G342600 chr2B 92.727 55 4 0 4277 4331 392618590 392618644 4.440000e-11 80.5
31 TraesCS4D01G342600 chr2B 92.727 55 4 0 4277 4331 392652131 392652185 4.440000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G342600 chr4D 498948134 498953478 5344 False 9871.000000 9871 100.000000 1 5345 1 chr4D.!!$F1 5344
1 TraesCS4D01G342600 chr4B 641411122 641416728 5606 False 941.000000 2076 87.148333 2 5345 6 chr4B.!!$F1 5343
2 TraesCS4D01G342600 chr5A 679737682 679742821 5139 False 580.571429 1683 87.008429 60 4720 7 chr5A.!!$F2 4660

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
337 349 0.031857 CTCAGGCGTGATAGAGCAGG 59.968 60.0 9.94 0.0 34.54 4.85 F
847 913 0.035317 GATAGCATCGCCATCCCACA 59.965 55.0 0.00 0.0 0.00 4.17 F
2797 3757 0.108945 GCAGCATTGGCCTCTTTGAC 60.109 55.0 3.32 0.0 42.56 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2204 2442 0.185901 TGGTGGCAAAAAGAGAGGCT 59.814 50.0 0.00 0.0 0.00 4.58 R
2802 3762 0.036875 AAACCAGAGCTACAGGTGCC 59.963 55.0 5.10 0.0 38.40 5.01 R
4783 5950 0.473755 TGCTGGACACAGTGGTTGAT 59.526 50.0 5.31 0.0 46.62 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 1.677576 CTGAAGCAAAGCCAACTCACA 59.322 47.619 0.00 0.00 0.00 3.58
64 74 8.749026 TTAATTTCACACCCAACTACAACTAA 57.251 30.769 0.00 0.00 0.00 2.24
99 109 2.657237 GGACGGAGGACACTGGTG 59.343 66.667 0.00 0.00 0.00 4.17
102 112 0.963962 GACGGAGGACACTGGTGTAA 59.036 55.000 6.35 0.00 45.05 2.41
103 113 0.677842 ACGGAGGACACTGGTGTAAC 59.322 55.000 6.35 3.54 45.05 2.50
162 173 6.487331 TCACATTAAGTTACCACCGAATGTTT 59.513 34.615 0.00 0.00 36.93 2.83
189 200 1.540363 GGGGACACACGAATCGCATAT 60.540 52.381 1.15 0.00 0.00 1.78
266 277 2.548707 GGCATCAGATTCCGATGTAGCA 60.549 50.000 10.73 0.00 41.91 3.49
286 297 1.527433 GAACAGAAACTGCTGGGGCC 61.527 60.000 0.00 0.00 40.20 5.80
287 298 2.115910 CAGAAACTGCTGGGGCCA 59.884 61.111 4.39 0.00 37.74 5.36
288 299 1.975407 CAGAAACTGCTGGGGCCAG 60.975 63.158 4.39 1.81 46.15 4.85
289 300 2.677875 GAAACTGCTGGGGCCAGG 60.678 66.667 4.39 0.00 43.77 4.45
301 312 2.125512 GCCAGGCCAGTACTCACG 60.126 66.667 5.01 0.00 0.00 4.35
302 313 2.943978 GCCAGGCCAGTACTCACGT 61.944 63.158 5.01 0.00 0.00 4.49
303 314 1.601419 GCCAGGCCAGTACTCACGTA 61.601 60.000 5.01 0.00 0.00 3.57
304 315 1.112113 CCAGGCCAGTACTCACGTAT 58.888 55.000 5.01 0.00 0.00 3.06
305 316 1.202417 CCAGGCCAGTACTCACGTATG 60.202 57.143 5.01 0.00 0.00 2.39
337 349 0.031857 CTCAGGCGTGATAGAGCAGG 59.968 60.000 9.94 0.00 34.54 4.85
370 382 5.947663 TCCAACCCACATAAAGAAGAAGAA 58.052 37.500 0.00 0.00 0.00 2.52
375 387 5.535030 ACCCACATAAAGAAGAAGAAACCAC 59.465 40.000 0.00 0.00 0.00 4.16
392 404 4.592485 ACCACTGATCGACTAATCATCC 57.408 45.455 0.00 0.00 35.21 3.51
400 412 2.356313 CTAATCATCCGCGGCGCT 60.356 61.111 30.54 11.77 0.00 5.92
453 465 4.129737 CGGTCTCGCCACATCGGT 62.130 66.667 0.00 0.00 36.97 4.69
466 478 0.460284 CATCGGTACACTGCTCACCC 60.460 60.000 0.00 0.00 0.00 4.61
494 506 1.000274 CACACTGACACTGTCCGATCA 60.000 52.381 6.72 0.00 0.00 2.92
519 538 2.574955 CCCTCCGTCGATCCATCCC 61.575 68.421 0.00 0.00 0.00 3.85
520 539 2.574955 CCTCCGTCGATCCATCCCC 61.575 68.421 0.00 0.00 0.00 4.81
521 540 2.910479 TCCGTCGATCCATCCCCG 60.910 66.667 0.00 0.00 0.00 5.73
522 541 3.991051 CCGTCGATCCATCCCCGG 61.991 72.222 0.00 0.00 32.62 5.73
523 542 3.224324 CGTCGATCCATCCCCGGT 61.224 66.667 0.00 0.00 0.00 5.28
524 543 1.900016 CGTCGATCCATCCCCGGTA 60.900 63.158 0.00 0.00 0.00 4.02
526 545 0.754472 GTCGATCCATCCCCGGTAAA 59.246 55.000 0.00 0.00 0.00 2.01
527 546 1.139455 GTCGATCCATCCCCGGTAAAA 59.861 52.381 0.00 0.00 0.00 1.52
529 548 2.440253 TCGATCCATCCCCGGTAAAAAT 59.560 45.455 0.00 0.00 0.00 1.82
530 549 2.812011 CGATCCATCCCCGGTAAAAATC 59.188 50.000 0.00 0.00 0.00 2.17
535 554 3.004315 CCATCCCCGGTAAAAATCAATCG 59.996 47.826 0.00 0.00 0.00 3.34
543 574 5.200454 CGGTAAAAATCAATCGATCTGCAG 58.800 41.667 7.63 7.63 0.00 4.41
559 590 3.055312 TCTGCAGCAGATCAGAACTGAAT 60.055 43.478 21.85 0.00 43.58 2.57
562 593 4.161001 TGCAGCAGATCAGAACTGAATAGA 59.839 41.667 11.79 0.00 43.58 1.98
566 597 7.116662 GCAGCAGATCAGAACTGAATAGATAAG 59.883 40.741 11.79 0.00 43.58 1.73
568 609 8.579006 AGCAGATCAGAACTGAATAGATAAGAG 58.421 37.037 11.79 0.00 43.58 2.85
585 626 7.288560 AGATAAGAGGCATTTCACTGATGAAT 58.711 34.615 0.00 0.00 44.36 2.57
600 641 6.149640 CACTGATGAATGAATGGATGGATCTC 59.850 42.308 0.00 0.00 0.00 2.75
603 644 5.238624 TGAATGAATGGATGGATCTCTCC 57.761 43.478 7.04 7.04 42.45 3.71
700 754 1.019673 TCCACTAAGCTAGTACGCCG 58.980 55.000 0.00 0.00 37.23 6.46
738 792 2.930019 CCACCCTGCCTCACCTCA 60.930 66.667 0.00 0.00 0.00 3.86
743 797 1.915266 CCTGCCTCACCTCACCTCA 60.915 63.158 0.00 0.00 0.00 3.86
847 913 0.035317 GATAGCATCGCCATCCCACA 59.965 55.000 0.00 0.00 0.00 4.17
885 951 0.594602 CAAAGTTGCTGCTGCTGCTA 59.405 50.000 27.67 19.90 40.48 3.49
886 952 1.201647 CAAAGTTGCTGCTGCTGCTAT 59.798 47.619 27.67 13.62 40.48 2.97
887 953 2.408271 AAGTTGCTGCTGCTGCTATA 57.592 45.000 27.67 13.40 40.48 1.31
888 954 2.634815 AGTTGCTGCTGCTGCTATAT 57.365 45.000 27.67 13.42 40.48 0.86
889 955 3.758755 AGTTGCTGCTGCTGCTATATA 57.241 42.857 27.67 8.50 40.48 0.86
890 956 3.661944 AGTTGCTGCTGCTGCTATATAG 58.338 45.455 27.67 5.30 40.48 1.31
962 1030 2.393271 AAGGAAGCAAGACCTGATCG 57.607 50.000 0.00 0.00 36.56 3.69
963 1031 1.561643 AGGAAGCAAGACCTGATCGA 58.438 50.000 0.00 0.00 34.99 3.59
993 1071 1.195442 GGGAGCTAGGCCAGGGATAC 61.195 65.000 5.01 0.00 0.00 2.24
1243 1321 0.456312 CTGCTTCGTCAGGGTACGTC 60.456 60.000 0.00 0.00 43.31 4.34
1245 1323 1.870055 GCTTCGTCAGGGTACGTCCA 61.870 60.000 0.00 0.00 43.31 4.02
1246 1324 0.815734 CTTCGTCAGGGTACGTCCAT 59.184 55.000 0.00 0.00 43.31 3.41
1248 1326 1.033746 TCGTCAGGGTACGTCCATCC 61.034 60.000 0.00 0.00 43.31 3.51
1249 1327 1.436336 GTCAGGGTACGTCCATCCG 59.564 63.158 0.00 0.00 38.11 4.18
1250 1328 1.000521 TCAGGGTACGTCCATCCGT 60.001 57.895 0.00 0.00 44.50 4.69
1251 1329 1.033746 TCAGGGTACGTCCATCCGTC 61.034 60.000 0.00 0.00 42.00 4.79
1253 1331 2.410469 GGTACGTCCATCCGTCCG 59.590 66.667 0.00 0.00 42.00 4.79
1254 1332 2.409870 GGTACGTCCATCCGTCCGT 61.410 63.158 0.00 0.00 42.00 4.69
1255 1333 1.063166 GTACGTCCATCCGTCCGTC 59.937 63.158 0.00 0.00 42.00 4.79
1258 1336 3.446570 GTCCATCCGTCCGTCCGT 61.447 66.667 0.00 0.00 0.00 4.69
1259 1337 3.136123 TCCATCCGTCCGTCCGTC 61.136 66.667 0.00 0.00 0.00 4.79
1261 1339 2.102357 CATCCGTCCGTCCGTCAG 59.898 66.667 0.00 0.00 0.00 3.51
1263 1341 1.078214 ATCCGTCCGTCCGTCAGTA 60.078 57.895 0.00 0.00 0.00 2.74
1264 1342 1.372087 ATCCGTCCGTCCGTCAGTAC 61.372 60.000 0.00 0.00 0.00 2.73
1265 1343 2.037136 CCGTCCGTCCGTCAGTACT 61.037 63.158 0.00 0.00 0.00 2.73
1266 1344 1.423056 CGTCCGTCCGTCAGTACTC 59.577 63.158 0.00 0.00 0.00 2.59
1268 1346 0.877071 GTCCGTCCGTCAGTACTCAA 59.123 55.000 0.00 0.00 0.00 3.02
1269 1347 1.471684 GTCCGTCCGTCAGTACTCAAT 59.528 52.381 0.00 0.00 0.00 2.57
1273 1351 2.734492 CGTCCGTCAGTACTCAATTCCC 60.734 54.545 0.00 0.00 0.00 3.97
1277 1379 3.195825 CCGTCAGTACTCAATTCCCTTCT 59.804 47.826 0.00 0.00 0.00 2.85
1287 1389 2.692041 CAATTCCCTTCTCTTCCATGGC 59.308 50.000 6.96 0.00 0.00 4.40
1290 1392 0.332632 CCCTTCTCTTCCATGGCCAA 59.667 55.000 10.96 0.00 0.00 4.52
1291 1393 1.684248 CCCTTCTCTTCCATGGCCAAG 60.684 57.143 10.96 4.76 0.00 3.61
1292 1394 1.283029 CCTTCTCTTCCATGGCCAAGA 59.717 52.381 10.96 11.20 0.00 3.02
1293 1395 2.641305 CTTCTCTTCCATGGCCAAGAG 58.359 52.381 26.61 26.61 44.87 2.85
1294 1396 0.254178 TCTCTTCCATGGCCAAGAGC 59.746 55.000 27.28 0.00 43.70 4.09
1295 1397 0.255318 CTCTTCCATGGCCAAGAGCT 59.745 55.000 23.26 0.00 39.34 4.09
1296 1398 0.254178 TCTTCCATGGCCAAGAGCTC 59.746 55.000 10.96 5.27 43.05 4.09
1298 1400 2.515523 CCATGGCCAAGAGCTCGG 60.516 66.667 10.96 5.62 43.05 4.63
1344 1465 6.095680 AGGTCAGAGGTAGGAGTAGATAGAT 58.904 44.000 0.00 0.00 0.00 1.98
1345 1466 6.564927 AGGTCAGAGGTAGGAGTAGATAGATT 59.435 42.308 0.00 0.00 0.00 2.40
1347 1468 7.825761 GGTCAGAGGTAGGAGTAGATAGATTAC 59.174 44.444 0.00 0.00 0.00 1.89
1365 1486 7.996098 AGATTACTAGAGAAGTAGAGATGCC 57.004 40.000 0.00 0.00 41.70 4.40
1366 1487 7.755618 AGATTACTAGAGAAGTAGAGATGCCT 58.244 38.462 0.00 0.00 41.70 4.75
1367 1488 7.665559 AGATTACTAGAGAAGTAGAGATGCCTG 59.334 40.741 0.00 0.00 41.70 4.85
1368 1489 4.469657 ACTAGAGAAGTAGAGATGCCTGG 58.530 47.826 0.00 0.00 36.36 4.45
1369 1490 2.038659 AGAGAAGTAGAGATGCCTGGC 58.961 52.381 12.87 12.87 0.00 4.85
1370 1491 2.038659 GAGAAGTAGAGATGCCTGGCT 58.961 52.381 21.03 5.22 0.00 4.75
1371 1492 1.761784 AGAAGTAGAGATGCCTGGCTG 59.238 52.381 21.03 0.00 0.00 4.85
1372 1493 0.179936 AAGTAGAGATGCCTGGCTGC 59.820 55.000 21.03 11.56 0.00 5.25
1373 1494 0.690411 AGTAGAGATGCCTGGCTGCT 60.690 55.000 21.03 16.30 0.00 4.24
1374 1495 0.249826 GTAGAGATGCCTGGCTGCTC 60.250 60.000 24.33 24.33 32.65 4.26
1452 1573 3.474570 GTGGAGGAGCCCGCTGAT 61.475 66.667 0.00 0.00 34.97 2.90
1468 1589 0.881118 TGATTGTCCTCTTTTGCCGC 59.119 50.000 0.00 0.00 0.00 6.53
1511 1632 7.021790 GGCAGTTTCTTCCTCTTTTATTTACG 58.978 38.462 0.00 0.00 0.00 3.18
1540 1664 2.203070 GTAGATGCGGGTGCTGGG 60.203 66.667 0.00 0.00 43.34 4.45
1541 1665 3.479203 TAGATGCGGGTGCTGGGG 61.479 66.667 0.00 0.00 43.34 4.96
1588 1726 2.575532 CCGTTGCCATATGAGTCCATT 58.424 47.619 3.65 0.00 34.31 3.16
1779 1948 5.768333 TCGATCATCGTGATAATTGATGC 57.232 39.130 7.00 0.00 41.35 3.91
1787 1956 6.252967 TCGTGATAATTGATGCTTGTTTGT 57.747 33.333 0.00 0.00 0.00 2.83
1792 1961 2.222007 TTGATGCTTGTTTGTGGTGC 57.778 45.000 0.00 0.00 0.00 5.01
1995 2175 4.832608 CGCCCTCGCCCTGGTAAC 62.833 72.222 0.00 0.00 0.00 2.50
1996 2176 3.400054 GCCCTCGCCCTGGTAACT 61.400 66.667 0.00 0.00 37.61 2.24
1997 2177 2.967946 GCCCTCGCCCTGGTAACTT 61.968 63.158 0.00 0.00 37.61 2.66
1998 2178 1.221021 CCCTCGCCCTGGTAACTTC 59.779 63.158 0.00 0.00 37.61 3.01
1999 2179 1.221021 CCTCGCCCTGGTAACTTCC 59.779 63.158 0.00 0.00 37.61 3.46
2000 2180 1.550130 CCTCGCCCTGGTAACTTCCA 61.550 60.000 0.00 0.00 36.00 3.53
2001 2181 0.541863 CTCGCCCTGGTAACTTCCAT 59.458 55.000 0.00 0.00 36.84 3.41
2002 2182 1.760613 CTCGCCCTGGTAACTTCCATA 59.239 52.381 0.00 0.00 36.84 2.74
2003 2183 1.483415 TCGCCCTGGTAACTTCCATAC 59.517 52.381 0.00 0.00 36.84 2.39
2004 2184 1.208535 CGCCCTGGTAACTTCCATACA 59.791 52.381 0.00 0.00 36.84 2.29
2005 2185 2.158813 CGCCCTGGTAACTTCCATACAT 60.159 50.000 0.00 0.00 36.84 2.29
2006 2186 3.070446 CGCCCTGGTAACTTCCATACATA 59.930 47.826 0.00 0.00 36.84 2.29
2007 2187 4.386711 GCCCTGGTAACTTCCATACATAC 58.613 47.826 0.00 0.00 36.84 2.39
2008 2188 4.141574 GCCCTGGTAACTTCCATACATACA 60.142 45.833 0.00 0.00 36.84 2.29
2009 2189 5.365619 CCCTGGTAACTTCCATACATACAC 58.634 45.833 0.00 0.00 36.84 2.90
2010 2190 5.104693 CCCTGGTAACTTCCATACATACACA 60.105 44.000 0.00 0.00 36.84 3.72
2011 2191 5.815740 CCTGGTAACTTCCATACATACACAC 59.184 44.000 0.00 0.00 36.84 3.82
2012 2192 5.412640 TGGTAACTTCCATACATACACACG 58.587 41.667 0.00 0.00 31.96 4.49
2013 2193 4.269363 GGTAACTTCCATACATACACACGC 59.731 45.833 0.00 0.00 0.00 5.34
2014 2194 3.603158 ACTTCCATACATACACACGCA 57.397 42.857 0.00 0.00 0.00 5.24
2015 2195 3.259064 ACTTCCATACATACACACGCAC 58.741 45.455 0.00 0.00 0.00 5.34
2016 2196 3.056107 ACTTCCATACATACACACGCACT 60.056 43.478 0.00 0.00 0.00 4.40
2017 2197 3.159353 TCCATACATACACACGCACTC 57.841 47.619 0.00 0.00 0.00 3.51
2018 2198 2.758423 TCCATACATACACACGCACTCT 59.242 45.455 0.00 0.00 0.00 3.24
2019 2199 3.194755 TCCATACATACACACGCACTCTT 59.805 43.478 0.00 0.00 0.00 2.85
2020 2200 3.932710 CCATACATACACACGCACTCTTT 59.067 43.478 0.00 0.00 0.00 2.52
2021 2201 4.032900 CCATACATACACACGCACTCTTTC 59.967 45.833 0.00 0.00 0.00 2.62
2022 2202 3.106242 ACATACACACGCACTCTTTCA 57.894 42.857 0.00 0.00 0.00 2.69
2023 2203 3.664107 ACATACACACGCACTCTTTCAT 58.336 40.909 0.00 0.00 0.00 2.57
2024 2204 4.065088 ACATACACACGCACTCTTTCATT 58.935 39.130 0.00 0.00 0.00 2.57
2025 2205 4.083855 ACATACACACGCACTCTTTCATTG 60.084 41.667 0.00 0.00 0.00 2.82
2026 2206 2.288666 ACACACGCACTCTTTCATTGT 58.711 42.857 0.00 0.00 0.00 2.71
2027 2207 2.287915 ACACACGCACTCTTTCATTGTC 59.712 45.455 0.00 0.00 0.00 3.18
2028 2208 1.873591 ACACGCACTCTTTCATTGTCC 59.126 47.619 0.00 0.00 0.00 4.02
2029 2209 1.197721 CACGCACTCTTTCATTGTCCC 59.802 52.381 0.00 0.00 0.00 4.46
2030 2210 0.804989 CGCACTCTTTCATTGTCCCC 59.195 55.000 0.00 0.00 0.00 4.81
2031 2211 1.611673 CGCACTCTTTCATTGTCCCCT 60.612 52.381 0.00 0.00 0.00 4.79
2032 2212 1.815003 GCACTCTTTCATTGTCCCCTG 59.185 52.381 0.00 0.00 0.00 4.45
2033 2213 1.815003 CACTCTTTCATTGTCCCCTGC 59.185 52.381 0.00 0.00 0.00 4.85
2034 2214 1.425066 ACTCTTTCATTGTCCCCTGCA 59.575 47.619 0.00 0.00 0.00 4.41
2035 2215 2.042162 ACTCTTTCATTGTCCCCTGCAT 59.958 45.455 0.00 0.00 0.00 3.96
2041 2221 2.040947 TCATTGTCCCCTGCATGTTACA 59.959 45.455 0.00 0.00 0.00 2.41
2049 2229 4.018870 TCCCCTGCATGTTACATTCAGTTA 60.019 41.667 19.99 5.88 0.00 2.24
2050 2230 4.889409 CCCCTGCATGTTACATTCAGTTAT 59.111 41.667 19.99 0.00 0.00 1.89
2056 2236 7.890515 TGCATGTTACATTCAGTTATTTTCCA 58.109 30.769 0.00 0.00 0.00 3.53
2058 2238 8.028938 GCATGTTACATTCAGTTATTTTCCAGT 58.971 33.333 0.00 0.00 0.00 4.00
2061 2241 9.126151 TGTTACATTCAGTTATTTTCCAGTTGA 57.874 29.630 0.00 0.00 0.00 3.18
2062 2242 9.612620 GTTACATTCAGTTATTTTCCAGTTGAG 57.387 33.333 0.00 0.00 0.00 3.02
2063 2243 7.823745 ACATTCAGTTATTTTCCAGTTGAGT 57.176 32.000 0.00 0.00 0.00 3.41
2064 2244 8.237811 ACATTCAGTTATTTTCCAGTTGAGTT 57.762 30.769 0.00 0.00 0.00 3.01
2065 2245 8.352942 ACATTCAGTTATTTTCCAGTTGAGTTC 58.647 33.333 0.00 0.00 0.00 3.01
2066 2246 8.571336 CATTCAGTTATTTTCCAGTTGAGTTCT 58.429 33.333 0.00 0.00 0.00 3.01
2067 2247 7.730364 TCAGTTATTTTCCAGTTGAGTTCTC 57.270 36.000 0.00 0.00 0.00 2.87
2076 2287 3.181471 CCAGTTGAGTTCTCTGTGTCAGT 60.181 47.826 1.53 0.00 32.61 3.41
2077 2288 4.047822 CAGTTGAGTTCTCTGTGTCAGTC 58.952 47.826 1.53 0.00 32.61 3.51
2083 2294 0.238553 TCTCTGTGTCAGTCGCTTCG 59.761 55.000 0.00 0.00 32.61 3.79
2118 2356 4.039973 GGAGGAATGTGGTGTCGGAATATA 59.960 45.833 0.00 0.00 0.00 0.86
2178 2416 0.808755 AAGCCTTTTTACCGATGCCG 59.191 50.000 0.00 0.00 0.00 5.69
2180 2418 1.061887 CCTTTTTACCGATGCCGCG 59.938 57.895 0.00 0.00 0.00 6.46
2181 2419 1.363145 CCTTTTTACCGATGCCGCGA 61.363 55.000 8.23 0.00 0.00 5.87
2182 2420 0.655733 CTTTTTACCGATGCCGCGAT 59.344 50.000 8.23 0.00 0.00 4.58
2183 2421 0.653636 TTTTTACCGATGCCGCGATC 59.346 50.000 8.23 1.96 0.00 3.69
2184 2422 1.484227 TTTTACCGATGCCGCGATCG 61.484 55.000 19.78 19.78 44.00 3.69
2185 2423 2.339100 TTTACCGATGCCGCGATCGA 62.339 55.000 26.05 9.11 46.72 3.59
2186 2424 2.137425 TTACCGATGCCGCGATCGAT 62.137 55.000 26.05 15.59 46.72 3.59
2216 2454 1.210722 GATCCCCGAGCCTCTCTTTTT 59.789 52.381 0.00 0.00 0.00 1.94
2217 2455 0.324943 TCCCCGAGCCTCTCTTTTTG 59.675 55.000 0.00 0.00 0.00 2.44
2218 2456 1.308783 CCCCGAGCCTCTCTTTTTGC 61.309 60.000 0.00 0.00 0.00 3.68
2225 2463 2.041620 AGCCTCTCTTTTTGCCACCATA 59.958 45.455 0.00 0.00 0.00 2.74
2268 2506 2.383298 TTCTCGAAAAGCAAGCAACG 57.617 45.000 0.00 0.00 0.00 4.10
2301 2540 1.603326 GAACCGACCGCCTTTTGTTTA 59.397 47.619 0.00 0.00 0.00 2.01
2383 3032 5.304357 GGGTTCCATTTTCAGGAGAAAGAAA 59.696 40.000 0.00 0.00 44.03 2.52
2384 3033 6.183360 GGGTTCCATTTTCAGGAGAAAGAAAA 60.183 38.462 0.00 0.00 44.03 2.29
2401 3050 6.920569 AAGAAAAATAGTACGTGGCATAGG 57.079 37.500 0.00 0.00 0.00 2.57
2402 3051 5.365619 AGAAAAATAGTACGTGGCATAGGG 58.634 41.667 0.00 0.00 0.00 3.53
2431 3080 2.743928 GAGCCTGTTGCCAGTCGG 60.744 66.667 0.00 0.00 42.71 4.79
2432 3081 4.335647 AGCCTGTTGCCAGTCGGG 62.336 66.667 0.00 0.00 42.71 5.14
2447 3096 6.699895 CCAGTCGGGCTTTTTAATTTTAAC 57.300 37.500 0.00 0.00 0.00 2.01
2449 3098 6.364976 CCAGTCGGGCTTTTTAATTTTAACTG 59.635 38.462 0.00 0.00 0.00 3.16
2538 3437 0.942962 GATGCAAGGAAGATCGCCAG 59.057 55.000 9.83 3.85 0.00 4.85
2570 3481 1.396996 CGCAGGAAGTTCAAATACCCG 59.603 52.381 5.01 0.00 0.00 5.28
2625 3544 9.827411 GCCTTTAATTACTTCTTCAGTTAGTTG 57.173 33.333 0.00 0.00 36.88 3.16
2650 3569 1.710013 CGCAGACAACGGTACAATCT 58.290 50.000 0.00 0.00 0.00 2.40
2701 3653 4.518970 GCTCTGGTTGGAGTATTTGTTGAA 59.481 41.667 0.00 0.00 35.89 2.69
2702 3654 5.335191 GCTCTGGTTGGAGTATTTGTTGAAG 60.335 44.000 0.00 0.00 35.89 3.02
2705 3657 6.039270 TCTGGTTGGAGTATTTGTTGAAGTTG 59.961 38.462 0.00 0.00 0.00 3.16
2711 3663 5.470098 GGAGTATTTGTTGAAGTTGAGCTGA 59.530 40.000 0.00 0.00 0.00 4.26
2714 3666 7.365741 AGTATTTGTTGAAGTTGAGCTGATTG 58.634 34.615 0.00 0.00 0.00 2.67
2741 3693 3.068024 AGTTAATGTGCTGTGGGTTGTTG 59.932 43.478 0.00 0.00 0.00 3.33
2744 3696 2.837291 TGCTGTGGGTTGTTGGGC 60.837 61.111 0.00 0.00 0.00 5.36
2751 3703 1.291906 GGGTTGTTGGGCGGATTTG 59.708 57.895 0.00 0.00 0.00 2.32
2752 3704 1.468506 GGGTTGTTGGGCGGATTTGT 61.469 55.000 0.00 0.00 0.00 2.83
2758 3718 0.468214 TTGGGCGGATTTGTGTGGAA 60.468 50.000 0.00 0.00 0.00 3.53
2759 3719 0.251564 TGGGCGGATTTGTGTGGAAT 60.252 50.000 0.00 0.00 0.00 3.01
2762 3722 0.527565 GCGGATTTGTGTGGAATGCT 59.472 50.000 0.00 0.00 0.00 3.79
2764 3724 2.477863 GCGGATTTGTGTGGAATGCTAC 60.478 50.000 0.00 0.00 0.00 3.58
2770 3730 6.318648 GGATTTGTGTGGAATGCTACTCATAA 59.681 38.462 0.00 0.00 34.33 1.90
2791 3751 2.180017 CGTTGCAGCATTGGCCTC 59.820 61.111 3.32 0.00 42.56 4.70
2793 3753 1.870055 CGTTGCAGCATTGGCCTCTT 61.870 55.000 3.32 0.00 42.56 2.85
2796 3756 0.540133 TGCAGCATTGGCCTCTTTGA 60.540 50.000 3.32 0.00 42.56 2.69
2797 3757 0.108945 GCAGCATTGGCCTCTTTGAC 60.109 55.000 3.32 0.00 42.56 3.18
2798 3758 1.542492 CAGCATTGGCCTCTTTGACT 58.458 50.000 3.32 0.00 42.56 3.41
2799 3759 2.715046 CAGCATTGGCCTCTTTGACTA 58.285 47.619 3.32 0.00 42.56 2.59
2800 3760 3.084039 CAGCATTGGCCTCTTTGACTAA 58.916 45.455 3.32 0.00 42.56 2.24
2802 3762 2.159517 GCATTGGCCTCTTTGACTAACG 60.160 50.000 3.32 0.00 0.00 3.18
2803 3763 2.178912 TTGGCCTCTTTGACTAACGG 57.821 50.000 3.32 0.00 0.00 4.44
2804 3764 0.321298 TGGCCTCTTTGACTAACGGC 60.321 55.000 3.32 0.00 36.83 5.68
2805 3765 0.321298 GGCCTCTTTGACTAACGGCA 60.321 55.000 0.00 0.00 39.23 5.69
2806 3766 0.796927 GCCTCTTTGACTAACGGCAC 59.203 55.000 0.00 0.00 37.48 5.01
2810 3770 1.414919 TCTTTGACTAACGGCACCTGT 59.585 47.619 0.00 0.00 0.00 4.00
2813 3773 0.245539 TGACTAACGGCACCTGTAGC 59.754 55.000 0.00 0.00 0.00 3.58
2814 3774 0.531200 GACTAACGGCACCTGTAGCT 59.469 55.000 0.00 0.00 0.00 3.32
2816 3776 0.818296 CTAACGGCACCTGTAGCTCT 59.182 55.000 0.00 0.00 0.00 4.09
2827 3792 3.070018 CCTGTAGCTCTGGTTTCAAGTG 58.930 50.000 0.00 0.00 0.00 3.16
2840 3805 4.083802 GGTTTCAAGTGGAATCTCAACTCG 60.084 45.833 0.00 0.00 34.91 4.18
2841 3806 4.336889 TTCAAGTGGAATCTCAACTCGT 57.663 40.909 0.00 0.00 0.00 4.18
2842 3807 3.653344 TCAAGTGGAATCTCAACTCGTG 58.347 45.455 0.00 0.00 0.00 4.35
2843 3808 2.086054 AGTGGAATCTCAACTCGTGC 57.914 50.000 0.00 0.00 0.00 5.34
2844 3809 1.620819 AGTGGAATCTCAACTCGTGCT 59.379 47.619 0.00 0.00 0.00 4.40
2845 3810 1.728971 GTGGAATCTCAACTCGTGCTG 59.271 52.381 0.00 0.00 0.00 4.41
2846 3811 1.618343 TGGAATCTCAACTCGTGCTGA 59.382 47.619 0.00 0.00 0.00 4.26
2847 3812 1.996191 GGAATCTCAACTCGTGCTGAC 59.004 52.381 0.00 0.00 0.00 3.51
2848 3813 2.610479 GGAATCTCAACTCGTGCTGACA 60.610 50.000 0.00 0.00 0.00 3.58
2852 3817 1.524355 CTCAACTCGTGCTGACAACAG 59.476 52.381 0.00 0.00 45.91 3.16
2853 3818 1.136110 TCAACTCGTGCTGACAACAGA 59.864 47.619 0.00 0.00 46.03 3.41
2855 3820 1.571919 ACTCGTGCTGACAACAGAAC 58.428 50.000 0.00 0.00 46.29 3.01
2856 3821 0.861837 CTCGTGCTGACAACAGAACC 59.138 55.000 0.00 0.00 46.87 3.62
2857 3822 0.874175 TCGTGCTGACAACAGAACCG 60.874 55.000 0.00 0.00 46.87 4.44
2858 3823 1.151777 CGTGCTGACAACAGAACCGT 61.152 55.000 0.00 0.00 46.87 4.83
2859 3824 0.304705 GTGCTGACAACAGAACCGTG 59.695 55.000 0.00 0.00 44.59 4.94
2860 3825 0.176910 TGCTGACAACAGAACCGTGA 59.823 50.000 0.00 0.00 46.03 4.35
2861 3826 0.861837 GCTGACAACAGAACCGTGAG 59.138 55.000 0.00 0.00 46.03 3.51
2863 3828 0.464036 TGACAACAGAACCGTGAGCT 59.536 50.000 0.00 0.00 0.00 4.09
2864 3829 1.684450 TGACAACAGAACCGTGAGCTA 59.316 47.619 0.00 0.00 0.00 3.32
2865 3830 2.059541 GACAACAGAACCGTGAGCTAC 58.940 52.381 0.00 0.00 0.00 3.58
2870 3835 2.870411 ACAGAACCGTGAGCTACAAAAC 59.130 45.455 0.00 0.00 0.00 2.43
2871 3836 2.096909 CAGAACCGTGAGCTACAAAACG 60.097 50.000 0.00 0.00 35.85 3.60
2872 3837 2.129607 GAACCGTGAGCTACAAAACGA 58.870 47.619 0.00 0.00 38.27 3.85
2874 3839 1.068127 ACCGTGAGCTACAAAACGAGT 59.932 47.619 0.00 2.19 38.27 4.18
2875 3840 1.719780 CCGTGAGCTACAAAACGAGTC 59.280 52.381 0.00 0.00 38.27 3.36
2876 3841 2.607282 CCGTGAGCTACAAAACGAGTCT 60.607 50.000 0.00 0.00 38.27 3.24
2877 3842 3.050619 CGTGAGCTACAAAACGAGTCTT 58.949 45.455 0.00 0.00 38.27 3.01
2878 3843 3.121328 CGTGAGCTACAAAACGAGTCTTG 60.121 47.826 0.00 0.00 38.27 3.02
2879 3844 3.802685 GTGAGCTACAAAACGAGTCTTGT 59.197 43.478 0.47 0.47 39.13 3.16
2880 3845 4.270325 GTGAGCTACAAAACGAGTCTTGTT 59.730 41.667 0.00 0.00 37.05 2.83
2881 3846 4.270084 TGAGCTACAAAACGAGTCTTGTTG 59.730 41.667 6.22 0.12 37.05 3.33
2882 3847 4.439057 AGCTACAAAACGAGTCTTGTTGA 58.561 39.130 6.22 0.00 37.05 3.18
2888 3853 6.715464 ACAAAACGAGTCTTGTTGATTAGTG 58.285 36.000 6.22 2.08 31.76 2.74
2893 3858 4.090642 CGAGTCTTGTTGATTAGTGCTGAC 59.909 45.833 0.00 0.00 0.00 3.51
2917 3882 7.088589 CCACATGGTAGGAGTAGAAATTTTG 57.911 40.000 0.00 0.00 0.00 2.44
2918 3883 6.404734 CCACATGGTAGGAGTAGAAATTTTGC 60.405 42.308 0.00 0.00 0.00 3.68
2920 3885 4.595986 TGGTAGGAGTAGAAATTTTGCCC 58.404 43.478 0.00 0.00 0.00 5.36
2921 3886 4.043561 TGGTAGGAGTAGAAATTTTGCCCA 59.956 41.667 0.00 0.00 0.00 5.36
2923 3888 5.299531 GGTAGGAGTAGAAATTTTGCCCATC 59.700 44.000 0.00 0.00 0.00 3.51
2924 3889 5.198602 AGGAGTAGAAATTTTGCCCATCT 57.801 39.130 0.00 0.00 0.00 2.90
2925 3890 5.583932 AGGAGTAGAAATTTTGCCCATCTT 58.416 37.500 0.00 0.00 0.00 2.40
2926 3891 6.731467 AGGAGTAGAAATTTTGCCCATCTTA 58.269 36.000 0.00 0.00 0.00 2.10
2927 3892 7.357471 AGGAGTAGAAATTTTGCCCATCTTAT 58.643 34.615 0.00 0.00 0.00 1.73
2928 3893 7.503902 AGGAGTAGAAATTTTGCCCATCTTATC 59.496 37.037 0.00 0.00 0.00 1.75
2929 3894 7.503902 GGAGTAGAAATTTTGCCCATCTTATCT 59.496 37.037 0.00 0.00 0.00 1.98
2930 3895 9.561069 GAGTAGAAATTTTGCCCATCTTATCTA 57.439 33.333 0.00 0.00 0.00 1.98
2935 3900 9.631452 GAAATTTTGCCCATCTTATCTATTAGC 57.369 33.333 0.00 0.00 0.00 3.09
2936 3901 6.801539 TTTTGCCCATCTTATCTATTAGCG 57.198 37.500 0.00 0.00 0.00 4.26
2937 3902 3.861840 TGCCCATCTTATCTATTAGCGC 58.138 45.455 0.00 0.00 0.00 5.92
2938 3903 3.260632 TGCCCATCTTATCTATTAGCGCA 59.739 43.478 11.47 0.00 0.00 6.09
2939 3904 3.868077 GCCCATCTTATCTATTAGCGCAG 59.132 47.826 11.47 0.00 0.00 5.18
2940 3905 4.621747 GCCCATCTTATCTATTAGCGCAGT 60.622 45.833 11.47 0.00 0.00 4.40
2941 3906 5.482908 CCCATCTTATCTATTAGCGCAGTT 58.517 41.667 11.47 0.00 0.00 3.16
2942 3907 5.934625 CCCATCTTATCTATTAGCGCAGTTT 59.065 40.000 11.47 0.00 0.00 2.66
2943 3908 6.091441 CCCATCTTATCTATTAGCGCAGTTTC 59.909 42.308 11.47 0.00 0.00 2.78
2944 3909 6.870965 CCATCTTATCTATTAGCGCAGTTTCT 59.129 38.462 11.47 0.00 0.00 2.52
2945 3910 7.148672 CCATCTTATCTATTAGCGCAGTTTCTG 60.149 40.741 11.47 0.00 34.12 3.02
2946 3911 7.039313 TCTTATCTATTAGCGCAGTTTCTGA 57.961 36.000 11.47 0.00 32.44 3.27
2947 3912 7.142021 TCTTATCTATTAGCGCAGTTTCTGAG 58.858 38.462 11.47 0.00 34.50 3.35
2952 3917 4.251760 CGCAGTTTCTGAGCTCGT 57.748 55.556 9.64 0.00 32.44 4.18
2953 3918 3.401577 CGCAGTTTCTGAGCTCGTA 57.598 52.632 9.64 0.00 32.44 3.43
2954 3919 1.914634 CGCAGTTTCTGAGCTCGTAT 58.085 50.000 9.64 0.00 32.44 3.06
2955 3920 1.585668 CGCAGTTTCTGAGCTCGTATG 59.414 52.381 9.64 3.24 32.44 2.39
2956 3921 2.611518 GCAGTTTCTGAGCTCGTATGT 58.388 47.619 9.64 0.00 32.44 2.29
2959 3924 4.434857 GCAGTTTCTGAGCTCGTATGTTTC 60.435 45.833 9.64 0.00 32.44 2.78
2968 3933 0.322322 TCGTATGTTTCCGTGGGCTT 59.678 50.000 0.00 0.00 0.00 4.35
2986 3951 3.062234 GGCTTAAAACTCCTTGACGATCG 59.938 47.826 14.88 14.88 0.00 3.69
2990 3955 4.778534 AAAACTCCTTGACGATCGAGTA 57.221 40.909 24.34 4.27 34.53 2.59
2992 3957 2.988570 ACTCCTTGACGATCGAGTACT 58.011 47.619 24.34 0.00 33.87 2.73
2993 3958 2.678836 ACTCCTTGACGATCGAGTACTG 59.321 50.000 24.34 8.43 33.87 2.74
2994 3959 1.400846 TCCTTGACGATCGAGTACTGC 59.599 52.381 24.34 2.44 0.00 4.40
2995 3960 1.132453 CCTTGACGATCGAGTACTGCA 59.868 52.381 24.34 5.02 0.00 4.41
2996 3961 2.177977 CTTGACGATCGAGTACTGCAC 58.822 52.381 24.34 2.20 0.00 4.57
2997 3962 1.450025 TGACGATCGAGTACTGCACT 58.550 50.000 24.34 0.00 41.47 4.40
2998 3963 1.130561 TGACGATCGAGTACTGCACTG 59.869 52.381 24.34 0.00 37.72 3.66
2999 3964 0.179161 ACGATCGAGTACTGCACTGC 60.179 55.000 24.34 0.00 37.72 4.40
3046 4033 3.540314 AGCTTACATTCAGAGCTGGAG 57.460 47.619 0.00 0.00 44.53 3.86
3071 4062 2.412847 GCACATGACGCTAACAACCTTC 60.413 50.000 0.00 0.00 0.00 3.46
3101 4092 0.666577 AAAGACGCGTACCAGCAGAC 60.667 55.000 13.97 0.00 36.85 3.51
3102 4093 1.802337 AAGACGCGTACCAGCAGACA 61.802 55.000 13.97 0.00 36.85 3.41
3103 4094 1.801913 GACGCGTACCAGCAGACAG 60.802 63.158 13.97 0.00 36.85 3.51
3153 4144 2.671963 GGCCCCGTTCCTGTCAAC 60.672 66.667 0.00 0.00 0.00 3.18
3191 4182 1.238439 CCTGGCGGCGATAATCAAAT 58.762 50.000 12.98 0.00 0.00 2.32
3192 4183 1.197721 CCTGGCGGCGATAATCAAATC 59.802 52.381 12.98 0.00 0.00 2.17
3193 4184 1.197721 CTGGCGGCGATAATCAAATCC 59.802 52.381 12.98 0.00 0.00 3.01
3197 4188 1.165270 GGCGATAATCAAATCCGGGG 58.835 55.000 0.00 0.00 0.00 5.73
3224 4219 0.689745 TAGGGGATCTTGGTCACCGG 60.690 60.000 0.00 0.00 46.65 5.28
3347 4411 3.631087 CCCTCTCCTCCACTTGGATAGAA 60.631 52.174 0.00 0.00 44.46 2.10
3348 4412 4.033709 CCTCTCCTCCACTTGGATAGAAA 58.966 47.826 0.00 0.00 44.46 2.52
3349 4413 4.657969 CCTCTCCTCCACTTGGATAGAAAT 59.342 45.833 0.00 0.00 44.46 2.17
3350 4414 5.841237 CCTCTCCTCCACTTGGATAGAAATA 59.159 44.000 0.00 0.00 44.46 1.40
3351 4415 6.239458 CCTCTCCTCCACTTGGATAGAAATAC 60.239 46.154 0.00 0.00 44.46 1.89
3352 4416 5.602978 TCTCCTCCACTTGGATAGAAATACC 59.397 44.000 0.00 0.00 44.46 2.73
3353 4417 5.285401 TCCTCCACTTGGATAGAAATACCA 58.715 41.667 0.00 0.00 44.46 3.25
3355 4419 5.131142 CCTCCACTTGGATAGAAATACCAGT 59.869 44.000 0.00 0.00 44.46 4.00
3356 4420 6.326583 CCTCCACTTGGATAGAAATACCAGTA 59.673 42.308 0.00 0.00 44.46 2.74
3358 4422 6.901300 TCCACTTGGATAGAAATACCAGTACT 59.099 38.462 0.00 0.00 39.78 2.73
3525 4607 3.201342 CAGTGTACTGACGCTTGCT 57.799 52.632 6.15 0.00 44.14 3.91
3526 4608 0.786581 CAGTGTACTGACGCTTGCTG 59.213 55.000 6.15 0.00 44.14 4.41
3527 4609 0.389391 AGTGTACTGACGCTTGCTGT 59.611 50.000 0.00 0.00 44.14 4.40
3528 4610 1.202533 AGTGTACTGACGCTTGCTGTT 60.203 47.619 0.00 0.00 44.14 3.16
3529 4611 1.070577 GTGTACTGACGCTTGCTGTTG 60.071 52.381 0.00 0.00 33.03 3.33
3542 4624 1.889105 CTGTTGCCATCGATCCCCG 60.889 63.158 0.00 0.00 40.25 5.73
3596 4678 2.677836 GACGTTGATTGCTCTAATGGCA 59.322 45.455 0.00 0.00 37.97 4.92
3610 4692 6.262720 GCTCTAATGGCATCTTCTCTGAAAAT 59.737 38.462 0.00 0.00 0.00 1.82
3612 4694 5.593679 AATGGCATCTTCTCTGAAAATGG 57.406 39.130 0.00 0.00 0.00 3.16
3652 4747 2.033832 GTGAAAATGGCGTGCAGTTTTG 60.034 45.455 9.98 0.00 0.00 2.44
3654 4749 0.879839 AAATGGCGTGCAGTTTTGGC 60.880 50.000 0.00 0.00 0.00 4.52
3655 4750 2.025767 AATGGCGTGCAGTTTTGGCA 62.026 50.000 0.00 0.00 41.33 4.92
3656 4751 2.355009 GGCGTGCAGTTTTGGCAG 60.355 61.111 0.00 0.00 42.85 4.85
3657 4752 2.721231 GCGTGCAGTTTTGGCAGA 59.279 55.556 0.00 0.00 42.85 4.26
3659 4754 0.318955 GCGTGCAGTTTTGGCAGAAT 60.319 50.000 0.00 0.00 42.85 2.40
3660 4755 1.411394 CGTGCAGTTTTGGCAGAATG 58.589 50.000 0.00 0.00 42.85 2.67
3661 4756 1.787012 GTGCAGTTTTGGCAGAATGG 58.213 50.000 0.00 0.00 42.85 3.16
3691 4792 1.989864 GACGATGTGTGCGAATGTGTA 59.010 47.619 0.00 0.00 0.00 2.90
3865 4966 3.362399 ATGGTCGCGCTCTCAGGTG 62.362 63.158 5.56 0.00 0.00 4.00
3913 5022 3.528370 CCGACGGCCCGAGAGATT 61.528 66.667 11.71 0.00 0.00 2.40
3914 5023 2.494918 CGACGGCCCGAGAGATTT 59.505 61.111 11.71 0.00 0.00 2.17
3916 5025 2.125106 ACGGCCCGAGAGATTTGC 60.125 61.111 11.71 0.00 0.00 3.68
3917 5026 2.187946 CGGCCCGAGAGATTTGCT 59.812 61.111 0.00 0.00 0.00 3.91
3919 5028 1.221840 GGCCCGAGAGATTTGCTGA 59.778 57.895 0.00 0.00 0.00 4.26
3920 5029 1.092345 GGCCCGAGAGATTTGCTGAC 61.092 60.000 0.00 0.00 0.00 3.51
3922 5031 1.649664 CCCGAGAGATTTGCTGACTG 58.350 55.000 0.00 0.00 0.00 3.51
3924 5033 1.066573 CCGAGAGATTTGCTGACTGGT 60.067 52.381 0.00 0.00 0.00 4.00
3933 5054 3.731652 TTGCTGACTGGTTGAATTTGG 57.268 42.857 0.00 0.00 0.00 3.28
3934 5055 2.942804 TGCTGACTGGTTGAATTTGGA 58.057 42.857 0.00 0.00 0.00 3.53
3935 5056 3.499338 TGCTGACTGGTTGAATTTGGAT 58.501 40.909 0.00 0.00 0.00 3.41
4228 5349 1.982395 CAGGTCCTCGGCTACACCA 60.982 63.158 0.00 0.00 39.03 4.17
4263 5384 2.651361 CAGACCGACTTCGCCAGT 59.349 61.111 0.00 0.00 39.07 4.00
4415 5536 6.017933 GTGTAAGAAGCTGTTTGATCATTCG 58.982 40.000 0.00 0.00 0.00 3.34
4505 5665 5.869753 TCTTGCAGCATACTTTCTTTCTC 57.130 39.130 0.00 0.00 0.00 2.87
4506 5666 5.555017 TCTTGCAGCATACTTTCTTTCTCT 58.445 37.500 0.00 0.00 0.00 3.10
4507 5667 5.410746 TCTTGCAGCATACTTTCTTTCTCTG 59.589 40.000 0.00 0.00 0.00 3.35
4508 5668 3.438087 TGCAGCATACTTTCTTTCTCTGC 59.562 43.478 0.00 0.00 44.07 4.26
4509 5669 3.688673 GCAGCATACTTTCTTTCTCTGCT 59.311 43.478 0.00 0.00 41.53 4.24
4524 5684 8.562892 TCTTTCTCTGCTTTTTGTATTCTCTTG 58.437 33.333 0.00 0.00 0.00 3.02
4740 5907 7.611821 TTTTAAAAACTTTTGCGGATAGTCG 57.388 32.000 0.00 0.00 0.00 4.18
4762 5929 2.780010 AGGTAGCACATAGGGCAGATTT 59.220 45.455 0.00 0.00 0.00 2.17
4763 5930 3.203040 AGGTAGCACATAGGGCAGATTTT 59.797 43.478 0.00 0.00 0.00 1.82
4764 5931 3.954258 GGTAGCACATAGGGCAGATTTTT 59.046 43.478 0.00 0.00 0.00 1.94
4807 5974 2.387757 ACCACTGTGTCCAGCAAAAAT 58.612 42.857 7.08 0.00 42.81 1.82
5116 6302 2.952310 AGGAAGCAAGAGGAACAACAAC 59.048 45.455 0.00 0.00 0.00 3.32
5119 6305 4.381505 GGAAGCAAGAGGAACAACAACAAA 60.382 41.667 0.00 0.00 0.00 2.83
5141 6332 0.673437 ACCCAGCGAAAATGTGTTGG 59.327 50.000 0.00 0.00 0.00 3.77
5230 6422 9.456147 TGATACTAGCAGTTAAAAGGCAAATAA 57.544 29.630 0.00 0.00 0.00 1.40
5262 6454 6.202188 AGCCTAAACCGACATGTAAAATATCG 59.798 38.462 0.00 0.00 0.00 2.92
5306 6498 1.304052 CCTGGCCCGTTTTGGATCA 60.304 57.895 0.00 0.00 42.00 2.92
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.253452 GTTTGCAGCGCACTCCAG 59.747 61.111 11.47 0.00 38.71 3.86
37 38 6.831868 AGTTGTAGTTGGGTGTGAAATTAAGT 59.168 34.615 0.00 0.00 0.00 2.24
64 74 3.015327 GTCCGATGTACTGTGTCCTAGT 58.985 50.000 0.00 0.00 0.00 2.57
99 109 6.388435 ACGGTTATCTACTGATCTGGTTAC 57.612 41.667 4.49 0.00 36.57 2.50
100 110 7.994911 TCTTACGGTTATCTACTGATCTGGTTA 59.005 37.037 4.49 0.00 36.57 2.85
102 112 6.262720 GTCTTACGGTTATCTACTGATCTGGT 59.737 42.308 4.49 1.23 36.57 4.00
103 113 6.487331 AGTCTTACGGTTATCTACTGATCTGG 59.513 42.308 4.49 0.00 36.57 3.86
266 277 0.538287 GCCCCAGCAGTTTCTGTTCT 60.538 55.000 0.00 0.00 39.53 3.01
296 307 0.815213 CCACCCATGCCATACGTGAG 60.815 60.000 0.00 0.00 37.49 3.51
297 308 1.223211 CCACCCATGCCATACGTGA 59.777 57.895 0.00 0.00 37.49 4.35
298 309 2.480610 GCCACCCATGCCATACGTG 61.481 63.158 0.00 0.00 34.83 4.49
299 310 2.124320 GCCACCCATGCCATACGT 60.124 61.111 0.00 0.00 0.00 3.57
300 311 1.893808 GAGCCACCCATGCCATACG 60.894 63.158 0.00 0.00 0.00 3.06
301 312 0.536006 GAGAGCCACCCATGCCATAC 60.536 60.000 0.00 0.00 0.00 2.39
302 313 0.987613 TGAGAGCCACCCATGCCATA 60.988 55.000 0.00 0.00 0.00 2.74
303 314 2.280404 CTGAGAGCCACCCATGCCAT 62.280 60.000 0.00 0.00 0.00 4.40
304 315 2.934932 TGAGAGCCACCCATGCCA 60.935 61.111 0.00 0.00 0.00 4.92
305 316 2.124403 CTGAGAGCCACCCATGCC 60.124 66.667 0.00 0.00 0.00 4.40
370 382 4.499865 CGGATGATTAGTCGATCAGTGGTT 60.500 45.833 0.00 0.00 39.26 3.67
375 387 2.245942 CGCGGATGATTAGTCGATCAG 58.754 52.381 0.00 0.00 39.26 2.90
453 465 1.414866 TTGCAGGGGTGAGCAGTGTA 61.415 55.000 0.00 0.00 0.00 2.90
466 478 1.534163 CAGTGTCAGTGTGATTGCAGG 59.466 52.381 0.00 0.00 0.00 4.85
494 506 1.134491 GGATCGACGGAGGGACAATTT 60.134 52.381 0.00 0.00 0.00 1.82
519 538 4.035091 TGCAGATCGATTGATTTTTACCGG 59.965 41.667 0.00 0.00 34.09 5.28
520 539 5.155509 TGCAGATCGATTGATTTTTACCG 57.844 39.130 0.00 0.00 34.09 4.02
521 540 4.972440 GCTGCAGATCGATTGATTTTTACC 59.028 41.667 20.43 0.00 34.09 2.85
522 541 5.572211 TGCTGCAGATCGATTGATTTTTAC 58.428 37.500 20.43 0.00 34.09 2.01
523 542 5.585844 TCTGCTGCAGATCGATTGATTTTTA 59.414 36.000 27.35 0.25 35.39 1.52
524 543 4.397103 TCTGCTGCAGATCGATTGATTTTT 59.603 37.500 27.35 0.00 35.39 1.94
526 545 3.538591 TCTGCTGCAGATCGATTGATTT 58.461 40.909 27.35 0.00 35.39 2.17
527 546 3.189618 TCTGCTGCAGATCGATTGATT 57.810 42.857 27.35 0.00 35.39 2.57
529 548 2.904697 ATCTGCTGCAGATCGATTGA 57.095 45.000 33.39 12.30 46.83 2.57
543 574 7.814107 CCTCTTATCTATTCAGTTCTGATCTGC 59.186 40.741 10.24 0.00 33.48 4.26
551 582 8.555361 GTGAAATGCCTCTTATCTATTCAGTTC 58.445 37.037 0.00 0.00 0.00 3.01
559 590 7.365497 TCATCAGTGAAATGCCTCTTATCTA 57.635 36.000 0.00 0.00 0.00 1.98
562 593 7.058525 TCATTCATCAGTGAAATGCCTCTTAT 58.941 34.615 11.25 0.00 46.67 1.73
566 597 5.571784 TTCATTCATCAGTGAAATGCCTC 57.428 39.130 11.25 0.00 46.67 4.70
568 609 5.047847 CCATTCATTCATCAGTGAAATGCC 58.952 41.667 11.25 0.00 46.67 4.40
585 626 2.630098 GACGGAGAGATCCATCCATTCA 59.370 50.000 12.89 0.00 35.14 2.57
603 644 2.057503 GATCGATGTGATCCAGGACG 57.942 55.000 0.54 0.00 46.55 4.79
700 754 1.812922 CGAGCCATGTGGTGAGAGC 60.813 63.158 0.35 0.00 37.57 4.09
733 787 1.536662 GGGTGAGGTGAGGTGAGGT 60.537 63.158 0.00 0.00 0.00 3.85
847 913 0.038159 GCGGTGGCGCTATCTAATCT 60.038 55.000 7.64 0.00 0.00 2.40
866 932 0.594602 TAGCAGCAGCAGCAACTTTG 59.405 50.000 12.92 0.00 45.49 2.77
885 951 3.702045 GGAGGCCGCAAGAGATACTATAT 59.298 47.826 9.31 0.00 43.02 0.86
886 952 3.090037 GGAGGCCGCAAGAGATACTATA 58.910 50.000 9.31 0.00 43.02 1.31
887 953 1.896465 GGAGGCCGCAAGAGATACTAT 59.104 52.381 9.31 0.00 43.02 2.12
888 954 1.329256 GGAGGCCGCAAGAGATACTA 58.671 55.000 9.31 0.00 43.02 1.82
889 955 0.687757 TGGAGGCCGCAAGAGATACT 60.688 55.000 9.31 0.00 43.02 2.12
890 956 0.249657 CTGGAGGCCGCAAGAGATAC 60.250 60.000 4.55 0.00 43.02 2.24
960 1028 4.770362 TCCCTGGATGGCCGTCGA 62.770 66.667 18.79 14.22 36.79 4.20
961 1029 4.227134 CTCCCTGGATGGCCGTCG 62.227 72.222 18.79 5.89 36.79 5.12
962 1030 4.554036 GCTCCCTGGATGGCCGTC 62.554 72.222 17.28 17.28 36.79 4.79
963 1031 3.696518 TAGCTCCCTGGATGGCCGT 62.697 63.158 0.00 0.00 36.79 5.68
993 1071 2.246739 CGGCGCCTCCATGTATGTG 61.247 63.158 26.68 0.00 34.01 3.21
1243 1321 3.411418 CTGACGGACGGACGGATGG 62.411 68.421 6.00 0.00 38.39 3.51
1245 1323 1.078214 TACTGACGGACGGACGGAT 60.078 57.895 6.00 0.00 38.39 4.18
1246 1324 2.034879 GTACTGACGGACGGACGGA 61.035 63.158 6.00 0.00 38.39 4.69
1248 1326 1.293963 TGAGTACTGACGGACGGACG 61.294 60.000 0.00 0.00 40.31 4.79
1249 1327 0.877071 TTGAGTACTGACGGACGGAC 59.123 55.000 0.00 0.00 0.00 4.79
1250 1328 1.830279 ATTGAGTACTGACGGACGGA 58.170 50.000 0.00 0.00 0.00 4.69
1251 1329 2.527100 GAATTGAGTACTGACGGACGG 58.473 52.381 0.00 0.00 0.00 4.79
1253 1331 2.496470 AGGGAATTGAGTACTGACGGAC 59.504 50.000 0.00 0.00 0.00 4.79
1254 1332 2.816411 AGGGAATTGAGTACTGACGGA 58.184 47.619 0.00 0.00 0.00 4.69
1255 1333 3.195825 AGAAGGGAATTGAGTACTGACGG 59.804 47.826 0.00 0.00 0.00 4.79
1258 1336 5.187967 GGAAGAGAAGGGAATTGAGTACTGA 59.812 44.000 0.00 0.00 0.00 3.41
1259 1337 5.046304 TGGAAGAGAAGGGAATTGAGTACTG 60.046 44.000 0.00 0.00 0.00 2.74
1261 1339 5.422214 TGGAAGAGAAGGGAATTGAGTAC 57.578 43.478 0.00 0.00 0.00 2.73
1263 1341 4.324874 CCATGGAAGAGAAGGGAATTGAGT 60.325 45.833 5.56 0.00 0.00 3.41
1264 1342 4.205587 CCATGGAAGAGAAGGGAATTGAG 58.794 47.826 5.56 0.00 0.00 3.02
1265 1343 3.625716 GCCATGGAAGAGAAGGGAATTGA 60.626 47.826 18.40 0.00 0.00 2.57
1266 1344 2.692041 GCCATGGAAGAGAAGGGAATTG 59.308 50.000 18.40 0.00 0.00 2.32
1268 1346 1.216427 GGCCATGGAAGAGAAGGGAAT 59.784 52.381 18.40 0.00 0.00 3.01
1269 1347 0.625849 GGCCATGGAAGAGAAGGGAA 59.374 55.000 18.40 0.00 0.00 3.97
1273 1351 2.641305 CTCTTGGCCATGGAAGAGAAG 58.359 52.381 27.77 15.94 45.51 2.85
1277 1379 0.254178 GAGCTCTTGGCCATGGAAGA 59.746 55.000 18.40 15.47 43.05 2.87
1287 1389 0.321122 AGCAAGAACCGAGCTCTTGG 60.321 55.000 12.85 9.19 46.55 3.61
1290 1392 0.321122 CCAAGCAAGAACCGAGCTCT 60.321 55.000 12.85 0.00 37.70 4.09
1291 1393 1.916697 GCCAAGCAAGAACCGAGCTC 61.917 60.000 2.73 2.73 37.70 4.09
1292 1394 1.968540 GCCAAGCAAGAACCGAGCT 60.969 57.895 0.00 0.00 41.03 4.09
1293 1395 2.563427 GCCAAGCAAGAACCGAGC 59.437 61.111 0.00 0.00 0.00 5.03
1294 1396 1.961277 ACGCCAAGCAAGAACCGAG 60.961 57.895 0.00 0.00 0.00 4.63
1295 1397 2.110213 ACGCCAAGCAAGAACCGA 59.890 55.556 0.00 0.00 0.00 4.69
1296 1398 2.175184 CTCACGCCAAGCAAGAACCG 62.175 60.000 0.00 0.00 0.00 4.44
1298 1400 1.129437 GATCTCACGCCAAGCAAGAAC 59.871 52.381 0.00 0.00 0.00 3.01
1344 1465 6.065374 CCAGGCATCTCTACTTCTCTAGTAA 58.935 44.000 0.00 0.00 38.84 2.24
1345 1466 5.626142 CCAGGCATCTCTACTTCTCTAGTA 58.374 45.833 0.00 0.00 38.33 1.82
1347 1468 3.255642 GCCAGGCATCTCTACTTCTCTAG 59.744 52.174 6.55 0.00 0.00 2.43
1354 1475 0.690411 AGCAGCCAGGCATCTCTACT 60.690 55.000 15.80 0.00 35.83 2.57
1355 1476 0.249826 GAGCAGCCAGGCATCTCTAC 60.250 60.000 15.80 0.00 35.83 2.59
1356 1477 1.742324 CGAGCAGCCAGGCATCTCTA 61.742 60.000 22.95 0.00 35.83 2.43
1357 1478 2.909577 GAGCAGCCAGGCATCTCT 59.090 61.111 15.80 4.24 35.83 3.10
1358 1479 2.588314 CGAGCAGCCAGGCATCTC 60.588 66.667 15.80 17.38 35.83 2.75
1359 1480 4.853050 GCGAGCAGCCAGGCATCT 62.853 66.667 15.80 9.89 40.81 2.90
1368 1489 3.997064 ATCACTCACCGCGAGCAGC 62.997 63.158 8.23 0.00 46.63 5.25
1369 1490 1.875813 GATCACTCACCGCGAGCAG 60.876 63.158 8.23 1.54 46.63 4.24
1370 1491 2.181777 GATCACTCACCGCGAGCA 59.818 61.111 8.23 0.00 46.63 4.26
1371 1492 2.583593 GGATCACTCACCGCGAGC 60.584 66.667 8.23 0.00 46.63 5.03
1373 1494 0.460109 CATTGGATCACTCACCGCGA 60.460 55.000 8.23 0.00 0.00 5.87
1374 1495 2.009108 CATTGGATCACTCACCGCG 58.991 57.895 0.00 0.00 0.00 6.46
1421 1542 4.170062 CCACATGCGAGCCAAGCG 62.170 66.667 0.00 0.00 37.44 4.68
1422 1543 2.747460 TCCACATGCGAGCCAAGC 60.747 61.111 0.00 0.00 0.00 4.01
1452 1573 2.903547 GCGCGGCAAAAGAGGACAA 61.904 57.895 8.83 0.00 0.00 3.18
1511 1632 1.742768 CATCTACCACCTCCTCGCC 59.257 63.158 0.00 0.00 0.00 5.54
1540 1664 3.310860 CTGTCACCACTACGGGCCC 62.311 68.421 13.57 13.57 40.22 5.80
1541 1665 2.264794 CTGTCACCACTACGGGCC 59.735 66.667 0.00 0.00 40.22 5.80
1547 1677 2.239400 CCTGTCAGACTGTCACCACTA 58.761 52.381 10.88 0.00 0.00 2.74
1549 1679 0.601311 GCCTGTCAGACTGTCACCAC 60.601 60.000 10.88 3.93 0.00 4.16
1670 1815 1.675641 GCATCGCTCCAACCCAACT 60.676 57.895 0.00 0.00 0.00 3.16
1766 1912 6.089820 CACCACAAACAAGCATCAATTATCAC 59.910 38.462 0.00 0.00 0.00 3.06
1767 1913 6.157904 CACCACAAACAAGCATCAATTATCA 58.842 36.000 0.00 0.00 0.00 2.15
1768 1914 5.062558 GCACCACAAACAAGCATCAATTATC 59.937 40.000 0.00 0.00 0.00 1.75
1779 1948 1.757574 CATCACGCACCACAAACAAG 58.242 50.000 0.00 0.00 0.00 3.16
1792 1961 4.758251 TCGCACCCCTGCATCACG 62.758 66.667 0.00 0.00 44.50 4.35
1994 2174 3.056107 AGTGCGTGTGTATGTATGGAAGT 60.056 43.478 0.00 0.00 0.00 3.01
1995 2175 3.521560 AGTGCGTGTGTATGTATGGAAG 58.478 45.455 0.00 0.00 0.00 3.46
1996 2176 3.194755 AGAGTGCGTGTGTATGTATGGAA 59.805 43.478 0.00 0.00 0.00 3.53
1997 2177 2.758423 AGAGTGCGTGTGTATGTATGGA 59.242 45.455 0.00 0.00 0.00 3.41
1998 2178 3.165058 AGAGTGCGTGTGTATGTATGG 57.835 47.619 0.00 0.00 0.00 2.74
1999 2179 4.625311 TGAAAGAGTGCGTGTGTATGTATG 59.375 41.667 0.00 0.00 0.00 2.39
2000 2180 4.816392 TGAAAGAGTGCGTGTGTATGTAT 58.184 39.130 0.00 0.00 0.00 2.29
2001 2181 4.245845 TGAAAGAGTGCGTGTGTATGTA 57.754 40.909 0.00 0.00 0.00 2.29
2002 2182 3.106242 TGAAAGAGTGCGTGTGTATGT 57.894 42.857 0.00 0.00 0.00 2.29
2003 2183 4.083855 ACAATGAAAGAGTGCGTGTGTATG 60.084 41.667 0.00 0.00 0.00 2.39
2004 2184 4.065088 ACAATGAAAGAGTGCGTGTGTAT 58.935 39.130 0.00 0.00 0.00 2.29
2005 2185 3.462982 ACAATGAAAGAGTGCGTGTGTA 58.537 40.909 0.00 0.00 0.00 2.90
2006 2186 2.287915 GACAATGAAAGAGTGCGTGTGT 59.712 45.455 0.00 0.00 0.00 3.72
2007 2187 2.349817 GGACAATGAAAGAGTGCGTGTG 60.350 50.000 0.00 0.00 0.00 3.82
2008 2188 1.873591 GGACAATGAAAGAGTGCGTGT 59.126 47.619 0.00 0.00 0.00 4.49
2009 2189 1.197721 GGGACAATGAAAGAGTGCGTG 59.802 52.381 0.00 0.00 0.00 5.34
2010 2190 1.523758 GGGACAATGAAAGAGTGCGT 58.476 50.000 0.00 0.00 0.00 5.24
2011 2191 0.804989 GGGGACAATGAAAGAGTGCG 59.195 55.000 0.00 0.00 0.00 5.34
2012 2192 1.815003 CAGGGGACAATGAAAGAGTGC 59.185 52.381 0.00 0.00 0.00 4.40
2013 2193 1.815003 GCAGGGGACAATGAAAGAGTG 59.185 52.381 0.00 0.00 0.00 3.51
2014 2194 1.425066 TGCAGGGGACAATGAAAGAGT 59.575 47.619 0.00 0.00 0.00 3.24
2015 2195 2.205022 TGCAGGGGACAATGAAAGAG 57.795 50.000 0.00 0.00 0.00 2.85
2016 2196 2.225091 ACATGCAGGGGACAATGAAAGA 60.225 45.455 2.31 0.00 0.00 2.52
2017 2197 2.173519 ACATGCAGGGGACAATGAAAG 58.826 47.619 2.31 0.00 0.00 2.62
2018 2198 2.307496 ACATGCAGGGGACAATGAAA 57.693 45.000 2.31 0.00 0.00 2.69
2019 2199 2.307496 AACATGCAGGGGACAATGAA 57.693 45.000 2.31 0.00 0.00 2.57
2020 2200 2.040947 TGTAACATGCAGGGGACAATGA 59.959 45.455 2.31 0.00 0.00 2.57
2021 2201 2.445427 TGTAACATGCAGGGGACAATG 58.555 47.619 2.31 0.00 0.00 2.82
2022 2202 2.897271 TGTAACATGCAGGGGACAAT 57.103 45.000 2.31 0.00 0.00 2.71
2023 2203 2.897271 ATGTAACATGCAGGGGACAA 57.103 45.000 10.93 0.00 0.00 3.18
2024 2204 2.040947 TGAATGTAACATGCAGGGGACA 59.959 45.455 2.31 6.69 0.00 4.02
2025 2205 2.684881 CTGAATGTAACATGCAGGGGAC 59.315 50.000 2.31 0.13 0.00 4.46
2026 2206 2.308570 ACTGAATGTAACATGCAGGGGA 59.691 45.455 0.73 0.00 0.00 4.81
2027 2207 2.726821 ACTGAATGTAACATGCAGGGG 58.273 47.619 0.73 0.00 0.00 4.79
2028 2208 6.455360 AATAACTGAATGTAACATGCAGGG 57.545 37.500 0.73 0.00 0.00 4.45
2029 2209 7.489113 GGAAAATAACTGAATGTAACATGCAGG 59.511 37.037 0.73 0.00 0.00 4.85
2030 2210 8.028354 TGGAAAATAACTGAATGTAACATGCAG 58.972 33.333 0.00 0.00 0.00 4.41
2031 2211 7.890515 TGGAAAATAACTGAATGTAACATGCA 58.109 30.769 0.00 0.00 0.00 3.96
2032 2212 8.028938 ACTGGAAAATAACTGAATGTAACATGC 58.971 33.333 0.00 0.00 0.00 4.06
2033 2213 9.912634 AACTGGAAAATAACTGAATGTAACATG 57.087 29.630 0.00 0.00 0.00 3.21
2034 2214 9.912634 CAACTGGAAAATAACTGAATGTAACAT 57.087 29.630 0.00 0.00 0.00 2.71
2035 2215 9.126151 TCAACTGGAAAATAACTGAATGTAACA 57.874 29.630 0.00 0.00 0.00 2.41
2041 2221 8.697507 AGAACTCAACTGGAAAATAACTGAAT 57.302 30.769 0.00 0.00 0.00 2.57
2049 2229 5.440610 ACACAGAGAACTCAACTGGAAAAT 58.559 37.500 4.64 0.00 36.17 1.82
2050 2230 4.843728 ACACAGAGAACTCAACTGGAAAA 58.156 39.130 4.64 0.00 36.17 2.29
2056 2236 3.243234 CGACTGACACAGAGAACTCAACT 60.243 47.826 5.76 0.00 35.18 3.16
2058 2238 2.543861 GCGACTGACACAGAGAACTCAA 60.544 50.000 5.76 0.00 35.18 3.02
2061 2241 1.323412 AGCGACTGACACAGAGAACT 58.677 50.000 5.76 0.00 35.18 3.01
2062 2242 2.055100 GAAGCGACTGACACAGAGAAC 58.945 52.381 5.76 0.00 35.18 3.01
2063 2243 1.335051 CGAAGCGACTGACACAGAGAA 60.335 52.381 5.76 0.00 35.18 2.87
2064 2244 0.238553 CGAAGCGACTGACACAGAGA 59.761 55.000 5.76 0.00 35.18 3.10
2065 2245 0.238553 TCGAAGCGACTGACACAGAG 59.761 55.000 5.76 1.14 35.18 3.35
2066 2246 2.327228 TCGAAGCGACTGACACAGA 58.673 52.632 5.76 0.00 35.18 3.41
2067 2247 4.944249 TCGAAGCGACTGACACAG 57.056 55.556 0.00 0.00 37.52 3.66
2118 2356 3.060020 GCGCCACATGCATGCTTCT 62.060 57.895 26.53 3.94 41.33 2.85
2144 2382 0.598680 GGCTTGATCGGAGATCGGTG 60.599 60.000 5.68 0.59 45.12 4.94
2204 2442 0.185901 TGGTGGCAAAAAGAGAGGCT 59.814 50.000 0.00 0.00 0.00 4.58
2268 2506 0.974383 TCGGTTCCTTTCAGGTCCTC 59.026 55.000 0.00 0.00 36.53 3.71
2301 2540 1.282157 CGGGTGGAAAGGAAAGGAGAT 59.718 52.381 0.00 0.00 0.00 2.75
2333 2572 0.882042 CATGATGGACTACTGGCGCC 60.882 60.000 22.73 22.73 0.00 6.53
2343 2582 3.576356 CCCGCACGCATGATGGAC 61.576 66.667 0.00 0.00 0.00 4.02
2383 3032 4.407945 ACTTCCCTATGCCACGTACTATTT 59.592 41.667 0.00 0.00 0.00 1.40
2384 3033 3.965347 ACTTCCCTATGCCACGTACTATT 59.035 43.478 0.00 0.00 0.00 1.73
2388 3037 2.685850 AACTTCCCTATGCCACGTAC 57.314 50.000 0.00 0.00 0.00 3.67
2401 3050 4.793028 GCAACAGGCTCAAAGTAAACTTCC 60.793 45.833 0.00 0.00 40.25 3.46
2402 3051 4.290969 GCAACAGGCTCAAAGTAAACTTC 58.709 43.478 0.00 0.00 40.25 3.01
2443 3092 9.624373 CCATCTTCTACTACTACTACCAGTTAA 57.376 37.037 0.00 0.00 0.00 2.01
2447 3096 6.487331 CACCCATCTTCTACTACTACTACCAG 59.513 46.154 0.00 0.00 0.00 4.00
2449 3098 5.241285 GCACCCATCTTCTACTACTACTACC 59.759 48.000 0.00 0.00 0.00 3.18
2482 3377 1.072159 GGGAATGATCGGCCTCTGG 59.928 63.158 0.00 0.00 0.00 3.86
2487 3382 2.666526 GCTCGGGAATGATCGGCC 60.667 66.667 0.00 0.00 0.00 6.13
2650 3569 2.829720 CCTACCAGCAGTACTACCAACA 59.170 50.000 0.00 0.00 0.00 3.33
2701 3653 1.350351 ACTGCTCCAATCAGCTCAACT 59.650 47.619 0.00 0.00 40.39 3.16
2702 3654 1.818642 ACTGCTCCAATCAGCTCAAC 58.181 50.000 0.00 0.00 40.39 3.18
2705 3657 3.944015 ACATTAACTGCTCCAATCAGCTC 59.056 43.478 0.00 0.00 40.39 4.09
2711 3663 3.192001 CACAGCACATTAACTGCTCCAAT 59.808 43.478 6.51 0.00 43.34 3.16
2714 3666 1.470098 CCACAGCACATTAACTGCTCC 59.530 52.381 6.51 0.00 43.34 4.70
2741 3693 0.173255 CATTCCACACAAATCCGCCC 59.827 55.000 0.00 0.00 0.00 6.13
2744 3696 3.009723 AGTAGCATTCCACACAAATCCG 58.990 45.455 0.00 0.00 0.00 4.18
2751 3703 4.811557 GGTCTTATGAGTAGCATTCCACAC 59.188 45.833 0.00 0.00 38.44 3.82
2752 3704 4.441495 CGGTCTTATGAGTAGCATTCCACA 60.441 45.833 0.00 0.00 38.44 4.17
2758 3718 3.118775 TGCAACGGTCTTATGAGTAGCAT 60.119 43.478 0.00 0.00 41.08 3.79
2759 3719 2.232696 TGCAACGGTCTTATGAGTAGCA 59.767 45.455 0.00 0.00 0.00 3.49
2762 3722 2.232696 TGCTGCAACGGTCTTATGAGTA 59.767 45.455 0.00 0.00 0.00 2.59
2764 3724 1.725641 TGCTGCAACGGTCTTATGAG 58.274 50.000 0.00 0.00 0.00 2.90
2770 3730 2.629656 GCCAATGCTGCAACGGTCT 61.630 57.895 18.44 0.00 33.53 3.85
2791 3751 1.878953 ACAGGTGCCGTTAGTCAAAG 58.121 50.000 0.00 0.00 0.00 2.77
2793 3753 1.337447 GCTACAGGTGCCGTTAGTCAA 60.337 52.381 0.00 0.00 0.00 3.18
2796 3756 0.531200 GAGCTACAGGTGCCGTTAGT 59.469 55.000 0.00 0.00 0.00 2.24
2797 3757 0.818296 AGAGCTACAGGTGCCGTTAG 59.182 55.000 0.00 0.00 0.00 2.34
2798 3758 0.530744 CAGAGCTACAGGTGCCGTTA 59.469 55.000 0.00 0.00 0.00 3.18
2799 3759 1.293498 CAGAGCTACAGGTGCCGTT 59.707 57.895 0.00 0.00 0.00 4.44
2800 3760 2.650116 CCAGAGCTACAGGTGCCGT 61.650 63.158 0.00 0.00 0.00 5.68
2802 3762 0.036875 AAACCAGAGCTACAGGTGCC 59.963 55.000 5.10 0.00 38.40 5.01
2803 3763 1.270839 TGAAACCAGAGCTACAGGTGC 60.271 52.381 5.10 2.52 38.40 5.01
2804 3764 2.839486 TGAAACCAGAGCTACAGGTG 57.161 50.000 5.10 0.00 38.40 4.00
2805 3765 2.706190 ACTTGAAACCAGAGCTACAGGT 59.294 45.455 0.00 0.00 40.13 4.00
2806 3766 3.070018 CACTTGAAACCAGAGCTACAGG 58.930 50.000 0.00 0.00 0.00 4.00
2810 3770 4.287067 AGATTCCACTTGAAACCAGAGCTA 59.713 41.667 0.00 0.00 36.33 3.32
2813 3773 4.645535 TGAGATTCCACTTGAAACCAGAG 58.354 43.478 0.00 0.00 36.33 3.35
2814 3774 4.705110 TGAGATTCCACTTGAAACCAGA 57.295 40.909 0.00 0.00 36.33 3.86
2816 3776 4.792068 AGTTGAGATTCCACTTGAAACCA 58.208 39.130 0.00 0.00 36.33 3.67
2827 3792 1.996191 GTCAGCACGAGTTGAGATTCC 59.004 52.381 0.00 0.00 35.55 3.01
2840 3805 0.304705 CACGGTTCTGTTGTCAGCAC 59.695 55.000 0.00 0.00 41.10 4.40
2841 3806 0.176910 TCACGGTTCTGTTGTCAGCA 59.823 50.000 0.00 0.00 41.10 4.41
2842 3807 0.861837 CTCACGGTTCTGTTGTCAGC 59.138 55.000 0.00 0.00 41.10 4.26
2843 3808 0.861837 GCTCACGGTTCTGTTGTCAG 59.138 55.000 0.00 0.00 42.54 3.51
2844 3809 0.464036 AGCTCACGGTTCTGTTGTCA 59.536 50.000 0.00 0.00 0.00 3.58
2845 3810 2.059541 GTAGCTCACGGTTCTGTTGTC 58.940 52.381 0.00 0.00 0.00 3.18
2846 3811 1.411246 TGTAGCTCACGGTTCTGTTGT 59.589 47.619 0.00 0.00 0.00 3.32
2847 3812 2.148916 TGTAGCTCACGGTTCTGTTG 57.851 50.000 0.00 0.00 0.00 3.33
2848 3813 2.902705 TTGTAGCTCACGGTTCTGTT 57.097 45.000 0.00 0.00 0.00 3.16
2852 3817 2.129607 TCGTTTTGTAGCTCACGGTTC 58.870 47.619 0.00 0.00 0.00 3.62
2853 3818 2.132762 CTCGTTTTGTAGCTCACGGTT 58.867 47.619 0.00 0.00 0.00 4.44
2855 3820 1.719780 GACTCGTTTTGTAGCTCACGG 59.280 52.381 0.00 0.00 0.00 4.94
2856 3821 2.662700 AGACTCGTTTTGTAGCTCACG 58.337 47.619 0.00 0.00 0.00 4.35
2857 3822 3.802685 ACAAGACTCGTTTTGTAGCTCAC 59.197 43.478 4.39 0.00 36.34 3.51
2858 3823 4.054780 ACAAGACTCGTTTTGTAGCTCA 57.945 40.909 4.39 0.00 36.34 4.26
2859 3824 4.506654 TCAACAAGACTCGTTTTGTAGCTC 59.493 41.667 6.42 0.00 36.98 4.09
2860 3825 4.439057 TCAACAAGACTCGTTTTGTAGCT 58.561 39.130 6.42 0.00 36.98 3.32
2861 3826 4.789095 TCAACAAGACTCGTTTTGTAGC 57.211 40.909 6.42 0.00 36.98 3.58
2863 3828 7.517734 GCACTAATCAACAAGACTCGTTTTGTA 60.518 37.037 6.42 0.00 36.98 2.41
2864 3829 6.715464 CACTAATCAACAAGACTCGTTTTGT 58.285 36.000 0.66 0.66 39.22 2.83
2865 3830 5.621228 GCACTAATCAACAAGACTCGTTTTG 59.379 40.000 0.00 0.00 0.00 2.44
2870 3835 4.090642 GTCAGCACTAATCAACAAGACTCG 59.909 45.833 0.00 0.00 0.00 4.18
2871 3836 4.390297 GGTCAGCACTAATCAACAAGACTC 59.610 45.833 0.00 0.00 0.00 3.36
2872 3837 4.202357 TGGTCAGCACTAATCAACAAGACT 60.202 41.667 0.00 0.00 0.00 3.24
2874 3839 4.065088 GTGGTCAGCACTAATCAACAAGA 58.935 43.478 0.00 0.00 0.00 3.02
2875 3840 3.814842 TGTGGTCAGCACTAATCAACAAG 59.185 43.478 8.76 0.00 0.00 3.16
2876 3841 3.814625 TGTGGTCAGCACTAATCAACAA 58.185 40.909 8.76 0.00 0.00 2.83
2877 3842 3.483808 TGTGGTCAGCACTAATCAACA 57.516 42.857 8.76 0.00 0.00 3.33
2878 3843 3.127548 CCATGTGGTCAGCACTAATCAAC 59.872 47.826 8.76 0.00 0.00 3.18
2879 3844 3.346315 CCATGTGGTCAGCACTAATCAA 58.654 45.455 8.76 0.00 0.00 2.57
2880 3845 2.989909 CCATGTGGTCAGCACTAATCA 58.010 47.619 8.76 0.00 0.00 2.57
2893 3858 6.404734 GCAAAATTTCTACTCCTACCATGTGG 60.405 42.308 0.00 0.00 42.17 4.17
2897 3862 5.201243 GGGCAAAATTTCTACTCCTACCAT 58.799 41.667 0.00 0.00 0.00 3.55
2904 3869 8.457238 AGATAAGATGGGCAAAATTTCTACTC 57.543 34.615 0.00 0.00 0.00 2.59
2910 3875 8.299570 CGCTAATAGATAAGATGGGCAAAATTT 58.700 33.333 0.00 0.00 0.00 1.82
2911 3876 7.575720 GCGCTAATAGATAAGATGGGCAAAATT 60.576 37.037 0.00 0.00 33.23 1.82
2912 3877 6.127897 GCGCTAATAGATAAGATGGGCAAAAT 60.128 38.462 0.00 0.00 33.23 1.82
2913 3878 5.181245 GCGCTAATAGATAAGATGGGCAAAA 59.819 40.000 0.00 0.00 33.23 2.44
2914 3879 4.695455 GCGCTAATAGATAAGATGGGCAAA 59.305 41.667 0.00 0.00 33.23 3.68
2915 3880 4.253685 GCGCTAATAGATAAGATGGGCAA 58.746 43.478 0.00 0.00 33.23 4.52
2916 3881 3.260632 TGCGCTAATAGATAAGATGGGCA 59.739 43.478 9.73 0.00 39.02 5.36
2917 3882 3.861840 TGCGCTAATAGATAAGATGGGC 58.138 45.455 9.73 0.00 0.00 5.36
2918 3883 5.078411 ACTGCGCTAATAGATAAGATGGG 57.922 43.478 9.73 0.00 0.00 4.00
2920 3885 7.596621 TCAGAAACTGCGCTAATAGATAAGATG 59.403 37.037 9.73 0.00 0.00 2.90
2921 3886 7.661968 TCAGAAACTGCGCTAATAGATAAGAT 58.338 34.615 9.73 0.00 0.00 2.40
2923 3888 6.128956 GCTCAGAAACTGCGCTAATAGATAAG 60.129 42.308 9.73 0.00 38.89 1.73
2924 3889 5.692204 GCTCAGAAACTGCGCTAATAGATAA 59.308 40.000 9.73 0.00 38.89 1.75
2925 3890 5.223382 GCTCAGAAACTGCGCTAATAGATA 58.777 41.667 9.73 0.00 38.89 1.98
2926 3891 4.054671 GCTCAGAAACTGCGCTAATAGAT 58.945 43.478 9.73 0.00 38.89 1.98
2927 3892 3.448686 GCTCAGAAACTGCGCTAATAGA 58.551 45.455 9.73 0.00 38.89 1.98
2928 3893 3.850657 GCTCAGAAACTGCGCTAATAG 57.149 47.619 9.73 0.00 38.89 1.73
2934 3899 0.732880 TACGAGCTCAGAAACTGCGC 60.733 55.000 15.40 0.00 41.80 6.09
2935 3900 1.585668 CATACGAGCTCAGAAACTGCG 59.414 52.381 15.40 0.00 0.00 5.18
2936 3901 2.611518 ACATACGAGCTCAGAAACTGC 58.388 47.619 15.40 0.00 0.00 4.40
2937 3902 4.092091 GGAAACATACGAGCTCAGAAACTG 59.908 45.833 15.40 4.53 0.00 3.16
2938 3903 4.246458 GGAAACATACGAGCTCAGAAACT 58.754 43.478 15.40 0.00 0.00 2.66
2939 3904 3.060895 CGGAAACATACGAGCTCAGAAAC 59.939 47.826 15.40 0.00 0.00 2.78
2940 3905 3.250744 CGGAAACATACGAGCTCAGAAA 58.749 45.455 15.40 0.00 0.00 2.52
2941 3906 2.230508 ACGGAAACATACGAGCTCAGAA 59.769 45.455 15.40 0.00 0.00 3.02
2942 3907 1.816835 ACGGAAACATACGAGCTCAGA 59.183 47.619 15.40 0.00 0.00 3.27
2943 3908 1.920574 CACGGAAACATACGAGCTCAG 59.079 52.381 15.40 9.21 0.00 3.35
2944 3909 1.403647 CCACGGAAACATACGAGCTCA 60.404 52.381 15.40 0.00 0.00 4.26
2945 3910 1.278238 CCACGGAAACATACGAGCTC 58.722 55.000 2.73 2.73 0.00 4.09
2946 3911 0.108329 CCCACGGAAACATACGAGCT 60.108 55.000 0.00 0.00 0.00 4.09
2947 3912 1.702491 GCCCACGGAAACATACGAGC 61.702 60.000 0.00 0.00 0.00 5.03
2948 3913 0.108329 AGCCCACGGAAACATACGAG 60.108 55.000 0.00 0.00 0.00 4.18
2949 3914 0.322322 AAGCCCACGGAAACATACGA 59.678 50.000 0.00 0.00 0.00 3.43
2950 3915 2.012937 TAAGCCCACGGAAACATACG 57.987 50.000 0.00 0.00 0.00 3.06
2951 3916 4.216902 AGTTTTAAGCCCACGGAAACATAC 59.783 41.667 0.00 0.00 33.77 2.39
2952 3917 4.400120 AGTTTTAAGCCCACGGAAACATA 58.600 39.130 0.00 0.00 33.77 2.29
2953 3918 3.227614 AGTTTTAAGCCCACGGAAACAT 58.772 40.909 0.00 0.00 33.77 2.71
2954 3919 2.619646 GAGTTTTAAGCCCACGGAAACA 59.380 45.455 0.00 0.00 33.77 2.83
2955 3920 2.030540 GGAGTTTTAAGCCCACGGAAAC 60.031 50.000 0.00 0.00 0.00 2.78
2956 3921 2.158579 AGGAGTTTTAAGCCCACGGAAA 60.159 45.455 0.00 0.00 0.00 3.13
2959 3924 1.539827 CAAGGAGTTTTAAGCCCACGG 59.460 52.381 0.00 0.00 0.00 4.94
2968 3933 4.778534 ACTCGATCGTCAAGGAGTTTTA 57.221 40.909 15.94 0.00 36.39 1.52
2986 3951 1.294659 GCAGTGGCAGTGCAGTACTC 61.295 60.000 35.76 9.91 43.79 2.59
2990 3955 4.193893 TGGCAGTGGCAGTGCAGT 62.194 61.111 39.18 3.24 46.06 4.40
3046 4033 1.428448 TGTTAGCGTCATGTGCTGTC 58.572 50.000 20.48 14.52 43.85 3.51
3058 4045 2.096909 CGTGTCAAGAAGGTTGTTAGCG 60.097 50.000 0.00 0.00 0.00 4.26
3071 4062 1.005347 ACGCGTCTTTTTCGTGTCAAG 60.005 47.619 5.58 0.00 46.49 3.02
3137 4128 2.671963 GGTTGACAGGAACGGGGC 60.672 66.667 0.00 0.00 0.00 5.80
3139 4130 4.379174 CTGGTTGACAGGAACGGG 57.621 61.111 0.00 0.00 43.70 5.28
3191 4182 1.057851 CCCCTAAATAGCACCCCGGA 61.058 60.000 0.73 0.00 0.00 5.14
3192 4183 1.057851 TCCCCTAAATAGCACCCCGG 61.058 60.000 0.00 0.00 0.00 5.73
3193 4184 1.003233 GATCCCCTAAATAGCACCCCG 59.997 57.143 0.00 0.00 0.00 5.73
3197 4188 4.141482 TGACCAAGATCCCCTAAATAGCAC 60.141 45.833 0.00 0.00 0.00 4.40
3347 4411 2.365617 CTCGGCATGGAGTACTGGTATT 59.634 50.000 0.00 0.00 0.00 1.89
3348 4412 1.964223 CTCGGCATGGAGTACTGGTAT 59.036 52.381 0.00 0.00 0.00 2.73
3349 4413 1.399714 CTCGGCATGGAGTACTGGTA 58.600 55.000 0.00 0.00 0.00 3.25
3350 4414 1.961180 GCTCGGCATGGAGTACTGGT 61.961 60.000 0.00 0.00 36.41 4.00
3351 4415 1.227380 GCTCGGCATGGAGTACTGG 60.227 63.158 0.00 0.00 36.41 4.00
3352 4416 1.227380 GGCTCGGCATGGAGTACTG 60.227 63.158 0.00 0.00 36.41 2.74
3353 4417 2.786495 CGGCTCGGCATGGAGTACT 61.786 63.158 0.00 0.00 36.41 2.73
3355 4419 2.758327 ACGGCTCGGCATGGAGTA 60.758 61.111 0.00 0.00 36.41 2.59
3356 4420 4.148825 GACGGCTCGGCATGGAGT 62.149 66.667 0.00 0.00 36.41 3.85
3524 4606 2.310327 TCGGGGATCGATGGCAACAG 62.310 60.000 0.54 0.00 44.82 3.16
3525 4607 2.363172 TCGGGGATCGATGGCAACA 61.363 57.895 0.54 0.00 44.61 3.33
3526 4608 2.504032 TCGGGGATCGATGGCAAC 59.496 61.111 0.54 0.00 43.74 4.17
3556 4638 0.663688 CTGGTACACGGAGAGGATCG 59.336 60.000 0.00 0.00 42.67 3.69
3596 4678 8.591114 AAATCATCACCATTTTCAGAGAAGAT 57.409 30.769 0.00 0.00 0.00 2.40
3610 4692 5.185056 TCACGACTCTTAGAAATCATCACCA 59.815 40.000 0.00 0.00 0.00 4.17
3612 4694 7.582435 TTTCACGACTCTTAGAAATCATCAC 57.418 36.000 0.00 0.00 0.00 3.06
3652 4747 3.731867 CGTCAGTTAATTGCCATTCTGCC 60.732 47.826 0.00 0.00 0.00 4.85
3654 4749 4.944962 TCGTCAGTTAATTGCCATTCTG 57.055 40.909 0.00 0.00 0.00 3.02
3655 4750 4.943705 ACATCGTCAGTTAATTGCCATTCT 59.056 37.500 0.00 0.00 0.00 2.40
3656 4751 5.030295 CACATCGTCAGTTAATTGCCATTC 58.970 41.667 0.00 0.00 0.00 2.67
3657 4752 4.458989 ACACATCGTCAGTTAATTGCCATT 59.541 37.500 0.00 0.00 0.00 3.16
3659 4754 3.188254 CACACATCGTCAGTTAATTGCCA 59.812 43.478 0.00 0.00 0.00 4.92
3660 4755 3.747193 CACACATCGTCAGTTAATTGCC 58.253 45.455 0.00 0.00 0.00 4.52
3661 4756 3.163594 GCACACATCGTCAGTTAATTGC 58.836 45.455 0.00 0.00 0.00 3.56
3662 4757 3.122780 TCGCACACATCGTCAGTTAATTG 59.877 43.478 0.00 0.00 0.00 2.32
3691 4792 4.479993 GCTGCCTCCGACCTGCAT 62.480 66.667 0.00 0.00 33.97 3.96
3865 4966 3.110178 GGTGGTGACTACGCACGC 61.110 66.667 0.00 0.00 39.66 5.34
3869 4970 0.669625 GGTTGAGGTGGTGACTACGC 60.670 60.000 0.00 0.00 0.00 4.42
3912 5021 3.703556 TCCAAATTCAACCAGTCAGCAAA 59.296 39.130 0.00 0.00 0.00 3.68
3913 5022 3.295093 TCCAAATTCAACCAGTCAGCAA 58.705 40.909 0.00 0.00 0.00 3.91
3914 5023 2.942804 TCCAAATTCAACCAGTCAGCA 58.057 42.857 0.00 0.00 0.00 4.41
3916 5025 4.240096 GCAATCCAAATTCAACCAGTCAG 58.760 43.478 0.00 0.00 0.00 3.51
3917 5026 3.640498 TGCAATCCAAATTCAACCAGTCA 59.360 39.130 0.00 0.00 0.00 3.41
3919 5028 3.007182 CCTGCAATCCAAATTCAACCAGT 59.993 43.478 0.00 0.00 0.00 4.00
3920 5029 3.592059 CCTGCAATCCAAATTCAACCAG 58.408 45.455 0.00 0.00 0.00 4.00
3922 5031 2.355007 CCCCTGCAATCCAAATTCAACC 60.355 50.000 0.00 0.00 0.00 3.77
3924 5033 1.278699 GCCCCTGCAATCCAAATTCAA 59.721 47.619 0.00 0.00 37.47 2.69
4415 5536 4.373348 AGCTAGTACAGATCGACCAAAC 57.627 45.455 0.00 0.00 0.00 2.93
4456 5577 2.718563 AGAAGAAGAGAGAGGACGGTC 58.281 52.381 0.00 0.00 0.00 4.79
4505 5665 7.699812 GGCTAATCAAGAGAATACAAAAAGCAG 59.300 37.037 0.00 0.00 0.00 4.24
4506 5666 7.394359 AGGCTAATCAAGAGAATACAAAAAGCA 59.606 33.333 0.00 0.00 0.00 3.91
4507 5667 7.766283 AGGCTAATCAAGAGAATACAAAAAGC 58.234 34.615 0.00 0.00 0.00 3.51
4508 5668 9.171877 AGAGGCTAATCAAGAGAATACAAAAAG 57.828 33.333 0.00 0.00 0.00 2.27
4509 5669 8.950210 CAGAGGCTAATCAAGAGAATACAAAAA 58.050 33.333 0.00 0.00 0.00 1.94
4655 5821 5.070685 ACACATGTCTGTCTGTACTCTGTA 58.929 41.667 0.00 0.00 31.62 2.74
4656 5822 3.891977 ACACATGTCTGTCTGTACTCTGT 59.108 43.478 0.00 0.00 31.62 3.41
4657 5823 4.511617 ACACATGTCTGTCTGTACTCTG 57.488 45.455 0.00 0.00 31.62 3.35
4658 5824 6.209589 ACATTACACATGTCTGTCTGTACTCT 59.790 38.462 0.00 0.00 31.62 3.24
4659 5825 6.309009 CACATTACACATGTCTGTCTGTACTC 59.691 42.308 0.00 0.00 31.62 2.59
4660 5826 6.159293 CACATTACACATGTCTGTCTGTACT 58.841 40.000 0.00 0.00 31.62 2.73
4661 5827 5.926542 ACACATTACACATGTCTGTCTGTAC 59.073 40.000 0.00 0.00 31.62 2.90
4740 5907 1.414158 TCTGCCCTATGTGCTACCTC 58.586 55.000 0.00 0.00 0.00 3.85
4770 5937 9.959721 ACACAGTGGTTGATACTTTAGATTATT 57.040 29.630 5.31 0.00 0.00 1.40
4771 5938 9.601217 GACACAGTGGTTGATACTTTAGATTAT 57.399 33.333 5.31 0.00 0.00 1.28
4772 5939 8.038944 GGACACAGTGGTTGATACTTTAGATTA 58.961 37.037 5.31 0.00 0.00 1.75
4783 5950 0.473755 TGCTGGACACAGTGGTTGAT 59.526 50.000 5.31 0.00 46.62 2.57
4829 5996 4.349636 TGTTCCATACAAAGAGACCAGGAA 59.650 41.667 0.00 0.00 32.64 3.36
4830 5997 3.907474 TGTTCCATACAAAGAGACCAGGA 59.093 43.478 0.00 0.00 32.64 3.86
5084 6270 5.487488 TCCTCTTGCTTCCTTCTGGTATTTA 59.513 40.000 0.00 0.00 34.23 1.40
5119 6305 3.194062 CAACACATTTTCGCTGGGTTTT 58.806 40.909 0.00 0.00 38.15 2.43
5123 6309 0.038343 CCCAACACATTTTCGCTGGG 60.038 55.000 0.00 0.00 37.74 4.45
5124 6310 0.958091 TCCCAACACATTTTCGCTGG 59.042 50.000 0.00 0.00 0.00 4.85
5125 6311 2.791383 TTCCCAACACATTTTCGCTG 57.209 45.000 0.00 0.00 0.00 5.18
5175 6367 9.900264 CTTCTTCTATTTTCGGTTTTGTTTTTG 57.100 29.630 0.00 0.00 0.00 2.44
5230 6422 6.584185 ACATGTCGGTTTAGGCTTTATTTT 57.416 33.333 0.00 0.00 0.00 1.82
5262 6454 2.222227 AGGCACCAATCCTTCCTTTC 57.778 50.000 0.00 0.00 0.00 2.62


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.