Multiple sequence alignment - TraesCS4D01G342000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G342000 chr4D 100.000 4266 0 0 1 4266 498687829 498683564 0.000000e+00 7878.0
1 TraesCS4D01G342000 chr4D 98.058 103 1 1 257 358 123573737 123573839 1.220000e-40 178.0
2 TraesCS4D01G342000 chr4D 98.058 103 1 1 257 358 240975949 240975847 1.220000e-40 178.0
3 TraesCS4D01G342000 chr4D 82.447 188 30 3 71 257 393784180 393783995 1.230000e-35 161.0
4 TraesCS4D01G342000 chr4D 93.902 82 5 0 1 82 23005323 23005404 1.610000e-24 124.0
5 TraesCS4D01G342000 chr5A 89.114 3996 198 113 427 4266 679377064 679373150 0.000000e+00 4750.0
6 TraesCS4D01G342000 chr5A 98.058 103 1 1 257 358 16553543 16553441 1.220000e-40 178.0
7 TraesCS4D01G342000 chr5A 83.152 184 26 5 71 254 92717064 92716886 3.410000e-36 163.0
8 TraesCS4D01G342000 chr4B 92.507 3163 104 42 418 3518 640825297 640822206 0.000000e+00 4405.0
9 TraesCS4D01G342000 chr4B 91.540 721 32 11 3551 4264 640818637 640817939 0.000000e+00 966.0
10 TraesCS4D01G342000 chr6B 87.766 188 20 3 71 257 172727901 172727716 2.580000e-52 217.0
11 TraesCS4D01G342000 chr7D 84.492 187 28 1 71 257 358727693 358727878 2.620000e-42 183.0
12 TraesCS4D01G342000 chr7D 98.058 103 1 1 257 358 307068962 307068860 1.220000e-40 178.0
13 TraesCS4D01G342000 chr7D 91.954 87 6 1 1 86 552951607 552951693 2.080000e-23 121.0
14 TraesCS4D01G342000 chrUn 98.058 103 1 1 257 358 434637522 434637624 1.220000e-40 178.0
15 TraesCS4D01G342000 chrUn 98.058 103 1 1 257 358 459606719 459606821 1.220000e-40 178.0
16 TraesCS4D01G342000 chr5D 98.058 103 1 1 257 358 3166253 3166355 1.220000e-40 178.0
17 TraesCS4D01G342000 chr5D 83.957 187 29 1 71 257 232587779 232587964 1.220000e-40 178.0
18 TraesCS4D01G342000 chr1B 98.058 103 1 1 257 358 461447420 461447522 1.220000e-40 178.0
19 TraesCS4D01G342000 chr1B 98.058 103 1 1 257 358 583505604 583505502 1.220000e-40 178.0
20 TraesCS4D01G342000 chr1B 85.333 75 11 0 1716 1790 520814943 520814869 1.270000e-10 78.7
21 TraesCS4D01G342000 chr1A 83.957 187 29 1 71 257 292846993 292846808 1.220000e-40 178.0
22 TraesCS4D01G342000 chr1A 83.957 187 29 1 71 257 292867943 292867758 1.220000e-40 178.0
23 TraesCS4D01G342000 chr1A 83.422 187 30 1 71 257 292822702 292822517 5.670000e-39 172.0
24 TraesCS4D01G342000 chr1A 82.888 187 31 1 71 257 292851366 292851181 2.640000e-37 167.0
25 TraesCS4D01G342000 chr1A 86.667 75 10 0 1716 1790 487102782 487102708 2.730000e-12 84.2
26 TraesCS4D01G342000 chr6D 98.611 72 1 0 1 72 41542579 41542650 1.250000e-25 128.0
27 TraesCS4D01G342000 chr6D 97.297 74 2 0 1 74 468251077 468251004 4.480000e-25 126.0
28 TraesCS4D01G342000 chr6D 92.941 85 5 1 1 85 425992912 425992829 5.790000e-24 122.0
29 TraesCS4D01G342000 chr6A 96.154 78 3 0 1 78 612560070 612559993 1.250000e-25 128.0
30 TraesCS4D01G342000 chr6A 92.135 89 4 3 1 87 613890054 613890141 5.790000e-24 122.0
31 TraesCS4D01G342000 chr2D 97.368 76 1 1 1 75 593801689 593801764 1.250000e-25 128.0
32 TraesCS4D01G342000 chr3B 97.222 72 2 0 1 72 706526641 706526712 5.790000e-24 122.0
33 TraesCS4D01G342000 chr1D 86.667 75 10 0 1716 1790 387433565 387433491 2.730000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G342000 chr4D 498683564 498687829 4265 True 7878.0 7878 100.0000 1 4266 1 chr4D.!!$R3 4265
1 TraesCS4D01G342000 chr5A 679373150 679377064 3914 True 4750.0 4750 89.1140 427 4266 1 chr5A.!!$R3 3839
2 TraesCS4D01G342000 chr4B 640817939 640825297 7358 True 2685.5 4405 92.0235 418 4264 2 chr4B.!!$R1 3846

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
270 271 0.028374 CGCGTTCCCGTTTCAACTTT 59.972 50.0 0.0 0.0 36.15 2.66 F
905 940 0.612744 AGAGGAGAAGGAGCTGTTGC 59.387 55.0 0.0 0.0 40.05 4.17 F
1831 1897 0.033504 CCTCCGATTACATCCCACGG 59.966 60.0 0.0 0.0 44.09 4.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1111 1149 0.394899 GACCTGGAATGGAAGCTGGG 60.395 60.0 0.00 0.00 0.00 4.45 R
2886 3028 0.590732 CCGGCGGCGTATATCGTATC 60.591 60.0 30.09 0.00 42.13 2.24 R
3489 3648 0.239879 CTAGCTAGCGGCAGTAGAGC 59.760 60.0 8.05 2.82 44.79 4.09 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.648725 ACTCATTTTGCTTCGTATGTAGTC 57.351 37.500 0.00 0.00 0.00 2.59
24 25 6.163476 ACTCATTTTGCTTCGTATGTAGTCA 58.837 36.000 0.00 0.00 0.00 3.41
25 26 6.090898 ACTCATTTTGCTTCGTATGTAGTCAC 59.909 38.462 0.00 0.00 0.00 3.67
26 27 6.163476 TCATTTTGCTTCGTATGTAGTCACT 58.837 36.000 0.00 0.00 0.00 3.41
27 28 6.310467 TCATTTTGCTTCGTATGTAGTCACTC 59.690 38.462 0.00 0.00 0.00 3.51
28 29 3.400505 TGCTTCGTATGTAGTCACTCG 57.599 47.619 0.00 0.00 0.00 4.18
29 30 2.745821 TGCTTCGTATGTAGTCACTCGT 59.254 45.455 0.00 0.00 0.00 4.18
30 31 3.189910 TGCTTCGTATGTAGTCACTCGTT 59.810 43.478 0.00 0.00 0.00 3.85
31 32 3.542704 GCTTCGTATGTAGTCACTCGTTG 59.457 47.826 0.00 0.00 0.00 4.10
32 33 3.752412 TCGTATGTAGTCACTCGTTGG 57.248 47.619 0.00 0.00 0.00 3.77
33 34 3.337358 TCGTATGTAGTCACTCGTTGGA 58.663 45.455 0.00 0.00 0.00 3.53
34 35 3.752747 TCGTATGTAGTCACTCGTTGGAA 59.247 43.478 0.00 0.00 0.00 3.53
35 36 4.397103 TCGTATGTAGTCACTCGTTGGAAT 59.603 41.667 0.00 0.00 0.00 3.01
36 37 4.733887 CGTATGTAGTCACTCGTTGGAATC 59.266 45.833 0.00 0.00 0.00 2.52
37 38 5.448768 CGTATGTAGTCACTCGTTGGAATCT 60.449 44.000 0.00 0.00 0.00 2.40
38 39 4.436242 TGTAGTCACTCGTTGGAATCTC 57.564 45.455 0.00 0.00 0.00 2.75
39 40 4.079970 TGTAGTCACTCGTTGGAATCTCT 58.920 43.478 0.00 0.00 0.00 3.10
40 41 5.250982 TGTAGTCACTCGTTGGAATCTCTA 58.749 41.667 0.00 0.00 0.00 2.43
41 42 4.974368 AGTCACTCGTTGGAATCTCTAG 57.026 45.455 0.00 0.00 0.00 2.43
42 43 4.590918 AGTCACTCGTTGGAATCTCTAGA 58.409 43.478 0.00 0.00 0.00 2.43
43 44 5.010933 AGTCACTCGTTGGAATCTCTAGAA 58.989 41.667 0.00 0.00 0.00 2.10
44 45 5.477291 AGTCACTCGTTGGAATCTCTAGAAA 59.523 40.000 0.00 0.00 0.00 2.52
45 46 5.802956 GTCACTCGTTGGAATCTCTAGAAAG 59.197 44.000 0.00 0.00 0.00 2.62
46 47 5.710567 TCACTCGTTGGAATCTCTAGAAAGA 59.289 40.000 0.00 0.00 0.00 2.52
47 48 5.802956 CACTCGTTGGAATCTCTAGAAAGAC 59.197 44.000 0.00 0.00 0.00 3.01
48 49 5.712917 ACTCGTTGGAATCTCTAGAAAGACT 59.287 40.000 0.00 0.00 0.00 3.24
49 50 6.209788 ACTCGTTGGAATCTCTAGAAAGACTT 59.790 38.462 0.00 0.00 0.00 3.01
50 51 7.393796 ACTCGTTGGAATCTCTAGAAAGACTTA 59.606 37.037 0.00 0.00 0.00 2.24
51 52 8.294954 TCGTTGGAATCTCTAGAAAGACTTAT 57.705 34.615 0.00 0.00 0.00 1.73
52 53 9.404848 TCGTTGGAATCTCTAGAAAGACTTATA 57.595 33.333 0.00 0.00 0.00 0.98
66 67 8.422566 AGAAAGACTTATATTTAGGAACGGAGG 58.577 37.037 0.00 0.00 0.00 4.30
67 68 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
68 69 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
69 70 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
70 71 6.141790 ACTTATATTTAGGAACGGAGGGAGT 58.858 40.000 0.00 0.00 0.00 3.85
71 72 7.300658 ACTTATATTTAGGAACGGAGGGAGTA 58.699 38.462 0.00 0.00 0.00 2.59
72 73 7.954620 ACTTATATTTAGGAACGGAGGGAGTAT 59.045 37.037 0.00 0.00 0.00 2.12
73 74 8.731591 TTATATTTAGGAACGGAGGGAGTATT 57.268 34.615 0.00 0.00 0.00 1.89
74 75 5.970501 ATTTAGGAACGGAGGGAGTATTT 57.029 39.130 0.00 0.00 0.00 1.40
75 76 4.748277 TTAGGAACGGAGGGAGTATTTG 57.252 45.455 0.00 0.00 0.00 2.32
76 77 1.209747 AGGAACGGAGGGAGTATTTGC 59.790 52.381 0.00 0.00 0.00 3.68
77 78 1.209747 GGAACGGAGGGAGTATTTGCT 59.790 52.381 0.00 0.00 0.00 3.91
78 79 2.355818 GGAACGGAGGGAGTATTTGCTT 60.356 50.000 0.00 0.00 0.00 3.91
79 80 2.403252 ACGGAGGGAGTATTTGCTTG 57.597 50.000 0.00 0.00 0.00 4.01
80 81 1.628846 ACGGAGGGAGTATTTGCTTGT 59.371 47.619 0.00 0.00 0.00 3.16
81 82 2.009774 CGGAGGGAGTATTTGCTTGTG 58.990 52.381 0.00 0.00 0.00 3.33
82 83 2.354704 CGGAGGGAGTATTTGCTTGTGA 60.355 50.000 0.00 0.00 0.00 3.58
83 84 3.686016 GGAGGGAGTATTTGCTTGTGAA 58.314 45.455 0.00 0.00 0.00 3.18
84 85 4.079253 GGAGGGAGTATTTGCTTGTGAAA 58.921 43.478 0.00 0.00 0.00 2.69
85 86 4.706962 GGAGGGAGTATTTGCTTGTGAAAT 59.293 41.667 0.00 0.00 0.00 2.17
86 87 5.885912 GGAGGGAGTATTTGCTTGTGAAATA 59.114 40.000 0.00 0.00 0.00 1.40
87 88 6.547510 GGAGGGAGTATTTGCTTGTGAAATAT 59.452 38.462 0.00 0.00 30.10 1.28
88 89 7.338800 AGGGAGTATTTGCTTGTGAAATATG 57.661 36.000 0.00 0.00 30.10 1.78
89 90 5.979517 GGGAGTATTTGCTTGTGAAATATGC 59.020 40.000 0.00 0.00 30.10 3.14
90 91 6.405731 GGGAGTATTTGCTTGTGAAATATGCA 60.406 38.462 0.00 0.00 36.37 3.96
91 92 7.035004 GGAGTATTTGCTTGTGAAATATGCAA 58.965 34.615 0.00 0.00 44.09 4.08
96 97 5.199024 TGCTTGTGAAATATGCAAAGTGT 57.801 34.783 0.00 0.00 35.29 3.55
97 98 5.599732 TGCTTGTGAAATATGCAAAGTGTT 58.400 33.333 0.00 0.00 35.29 3.32
98 99 6.047870 TGCTTGTGAAATATGCAAAGTGTTT 58.952 32.000 0.00 0.00 35.29 2.83
99 100 7.205992 TGCTTGTGAAATATGCAAAGTGTTTA 58.794 30.769 0.00 0.00 35.29 2.01
100 101 7.871973 TGCTTGTGAAATATGCAAAGTGTTTAT 59.128 29.630 0.00 0.00 35.29 1.40
101 102 8.711457 GCTTGTGAAATATGCAAAGTGTTTATT 58.289 29.630 0.00 0.00 0.00 1.40
103 104 9.755804 TTGTGAAATATGCAAAGTGTTTATTGA 57.244 25.926 0.00 0.00 0.00 2.57
104 105 9.755804 TGTGAAATATGCAAAGTGTTTATTGAA 57.244 25.926 0.00 0.00 0.00 2.69
110 111 9.941325 ATATGCAAAGTGTTTATTGAAAATGGA 57.059 25.926 0.00 0.00 0.00 3.41
111 112 7.712264 TGCAAAGTGTTTATTGAAAATGGAG 57.288 32.000 0.00 0.00 0.00 3.86
112 113 6.705381 TGCAAAGTGTTTATTGAAAATGGAGG 59.295 34.615 0.00 0.00 0.00 4.30
113 114 6.705825 GCAAAGTGTTTATTGAAAATGGAGGT 59.294 34.615 0.00 0.00 0.00 3.85
114 115 7.095649 GCAAAGTGTTTATTGAAAATGGAGGTC 60.096 37.037 0.00 0.00 0.00 3.85
115 116 7.595819 AAGTGTTTATTGAAAATGGAGGTCA 57.404 32.000 0.00 0.00 0.00 4.02
116 117 7.219484 AGTGTTTATTGAAAATGGAGGTCAG 57.781 36.000 0.00 0.00 0.00 3.51
117 118 5.863935 GTGTTTATTGAAAATGGAGGTCAGC 59.136 40.000 0.00 0.00 0.00 4.26
118 119 5.047377 TGTTTATTGAAAATGGAGGTCAGCC 60.047 40.000 0.00 0.00 0.00 4.85
119 120 1.533625 TTGAAAATGGAGGTCAGCCG 58.466 50.000 0.00 0.00 40.50 5.52
120 121 0.690192 TGAAAATGGAGGTCAGCCGA 59.310 50.000 0.00 0.00 40.50 5.54
121 122 1.281867 TGAAAATGGAGGTCAGCCGAT 59.718 47.619 0.00 0.00 40.50 4.18
122 123 1.943340 GAAAATGGAGGTCAGCCGATC 59.057 52.381 0.00 0.00 40.50 3.69
123 124 0.911769 AAATGGAGGTCAGCCGATCA 59.088 50.000 0.00 0.00 40.50 2.92
124 125 0.179000 AATGGAGGTCAGCCGATCAC 59.821 55.000 0.00 0.00 40.50 3.06
125 126 0.977627 ATGGAGGTCAGCCGATCACA 60.978 55.000 0.00 0.00 40.50 3.58
126 127 1.153549 GGAGGTCAGCCGATCACAC 60.154 63.158 0.00 0.00 40.50 3.82
127 128 1.153549 GAGGTCAGCCGATCACACC 60.154 63.158 0.00 0.00 40.50 4.16
128 129 2.509336 GGTCAGCCGATCACACCG 60.509 66.667 0.00 0.00 0.00 4.94
134 135 3.903783 CCGATCACACCGGCAAAT 58.096 55.556 0.00 0.00 40.54 2.32
135 136 3.073086 CCGATCACACCGGCAAATA 57.927 52.632 0.00 0.00 40.54 1.40
136 137 1.593196 CCGATCACACCGGCAAATAT 58.407 50.000 0.00 0.00 40.54 1.28
137 138 1.264020 CCGATCACACCGGCAAATATG 59.736 52.381 0.00 0.00 40.54 1.78
138 139 1.264020 CGATCACACCGGCAAATATGG 59.736 52.381 0.00 0.00 0.00 2.74
139 140 1.608590 GATCACACCGGCAAATATGGG 59.391 52.381 0.00 0.00 0.00 4.00
140 141 0.621082 TCACACCGGCAAATATGGGA 59.379 50.000 0.00 0.00 0.00 4.37
141 142 1.214175 TCACACCGGCAAATATGGGAT 59.786 47.619 0.00 0.00 0.00 3.85
142 143 1.608590 CACACCGGCAAATATGGGATC 59.391 52.381 0.00 0.00 0.00 3.36
143 144 0.874390 CACCGGCAAATATGGGATCG 59.126 55.000 0.00 0.00 0.00 3.69
144 145 0.762418 ACCGGCAAATATGGGATCGA 59.238 50.000 0.00 0.00 0.00 3.59
145 146 1.156736 CCGGCAAATATGGGATCGAC 58.843 55.000 0.00 0.00 0.00 4.20
146 147 0.790207 CGGCAAATATGGGATCGACG 59.210 55.000 0.00 0.00 0.00 5.12
147 148 0.517316 GGCAAATATGGGATCGACGC 59.483 55.000 0.00 0.00 0.00 5.19
148 149 0.163788 GCAAATATGGGATCGACGCG 59.836 55.000 3.53 3.53 0.00 6.01
149 150 1.497991 CAAATATGGGATCGACGCGT 58.502 50.000 13.85 13.85 35.00 6.01
150 151 1.864711 CAAATATGGGATCGACGCGTT 59.135 47.619 15.53 0.00 32.92 4.84
151 152 1.497991 AATATGGGATCGACGCGTTG 58.502 50.000 20.76 20.76 32.92 4.10
152 153 0.319555 ATATGGGATCGACGCGTTGG 60.320 55.000 25.66 15.24 32.92 3.77
153 154 2.358193 TATGGGATCGACGCGTTGGG 62.358 60.000 25.66 12.67 32.92 4.12
154 155 4.446413 GGGATCGACGCGTTGGGT 62.446 66.667 25.66 15.04 0.00 4.51
155 156 3.186047 GGATCGACGCGTTGGGTG 61.186 66.667 25.66 8.20 0.00 4.61
156 157 3.849953 GATCGACGCGTTGGGTGC 61.850 66.667 25.66 9.44 0.00 5.01
157 158 4.673298 ATCGACGCGTTGGGTGCA 62.673 61.111 25.66 6.97 0.00 4.57
160 161 4.012895 GACGCGTTGGGTGCACTG 62.013 66.667 15.53 3.15 0.00 3.66
163 164 4.332637 GCGTTGGGTGCACTGCTG 62.333 66.667 17.98 4.61 0.00 4.41
164 165 2.591429 CGTTGGGTGCACTGCTGA 60.591 61.111 17.98 0.00 0.00 4.26
165 166 2.896801 CGTTGGGTGCACTGCTGAC 61.897 63.158 17.98 7.89 0.00 3.51
166 167 2.203337 TTGGGTGCACTGCTGACC 60.203 61.111 17.98 8.74 0.00 4.02
169 170 2.034687 GGTGCACTGCTGACCCAT 59.965 61.111 17.98 0.00 0.00 4.00
170 171 1.299648 GGTGCACTGCTGACCCATA 59.700 57.895 17.98 0.00 0.00 2.74
171 172 0.107017 GGTGCACTGCTGACCCATAT 60.107 55.000 17.98 0.00 0.00 1.78
172 173 1.303309 GTGCACTGCTGACCCATATC 58.697 55.000 10.32 0.00 0.00 1.63
173 174 0.911053 TGCACTGCTGACCCATATCA 59.089 50.000 1.98 0.00 0.00 2.15
174 175 1.281577 TGCACTGCTGACCCATATCAA 59.718 47.619 1.98 0.00 0.00 2.57
175 176 2.290832 TGCACTGCTGACCCATATCAAA 60.291 45.455 1.98 0.00 0.00 2.69
176 177 2.754552 GCACTGCTGACCCATATCAAAA 59.245 45.455 0.00 0.00 0.00 2.44
177 178 3.193267 GCACTGCTGACCCATATCAAAAA 59.807 43.478 0.00 0.00 0.00 1.94
178 179 4.676196 GCACTGCTGACCCATATCAAAAAG 60.676 45.833 0.00 0.00 0.00 2.27
179 180 4.701651 CACTGCTGACCCATATCAAAAAGA 59.298 41.667 0.00 0.00 0.00 2.52
180 181 4.946157 ACTGCTGACCCATATCAAAAAGAG 59.054 41.667 0.00 0.00 0.00 2.85
181 182 4.272489 TGCTGACCCATATCAAAAAGAGG 58.728 43.478 0.00 0.00 0.00 3.69
182 183 4.018506 TGCTGACCCATATCAAAAAGAGGA 60.019 41.667 0.00 0.00 0.00 3.71
183 184 4.336713 GCTGACCCATATCAAAAAGAGGAC 59.663 45.833 0.00 0.00 0.00 3.85
184 185 4.513442 TGACCCATATCAAAAAGAGGACG 58.487 43.478 0.00 0.00 0.00 4.79
185 186 3.877508 GACCCATATCAAAAAGAGGACGG 59.122 47.826 0.00 0.00 0.00 4.79
186 187 3.521937 ACCCATATCAAAAAGAGGACGGA 59.478 43.478 0.00 0.00 0.00 4.69
187 188 3.877508 CCCATATCAAAAAGAGGACGGAC 59.122 47.826 0.00 0.00 0.00 4.79
188 189 4.513442 CCATATCAAAAAGAGGACGGACA 58.487 43.478 0.00 0.00 0.00 4.02
189 190 4.332819 CCATATCAAAAAGAGGACGGACAC 59.667 45.833 0.00 0.00 0.00 3.67
191 192 1.409790 TCAAAAAGAGGACGGACACGA 59.590 47.619 0.00 0.00 44.60 4.35
192 193 2.159071 TCAAAAAGAGGACGGACACGAA 60.159 45.455 0.00 0.00 44.60 3.85
193 194 2.607631 AAAAGAGGACGGACACGAAA 57.392 45.000 0.00 0.00 44.60 3.46
194 195 1.861971 AAAGAGGACGGACACGAAAC 58.138 50.000 0.00 0.00 44.60 2.78
195 196 0.318445 AAGAGGACGGACACGAAACG 60.318 55.000 0.00 0.00 44.60 3.60
196 197 1.731969 GAGGACGGACACGAAACGG 60.732 63.158 0.00 0.00 44.60 4.44
197 198 2.735857 GGACGGACACGAAACGGG 60.736 66.667 0.00 0.00 44.60 5.28
199 200 2.279650 ACGGACACGAAACGGGTG 60.280 61.111 3.26 0.00 46.20 4.61
200 201 3.039588 CGGACACGAAACGGGTGG 61.040 66.667 3.26 0.00 46.20 4.61
201 202 3.351416 GGACACGAAACGGGTGGC 61.351 66.667 3.26 0.00 46.20 5.01
202 203 3.351416 GACACGAAACGGGTGGCC 61.351 66.667 3.26 0.00 46.20 5.36
204 205 4.973055 CACGAAACGGGTGGCCGA 62.973 66.667 0.00 0.00 36.94 5.54
205 206 4.011517 ACGAAACGGGTGGCCGAT 62.012 61.111 0.00 0.00 36.94 4.18
206 207 3.192922 CGAAACGGGTGGCCGATC 61.193 66.667 0.00 0.00 36.94 3.69
207 208 2.822701 GAAACGGGTGGCCGATCC 60.823 66.667 0.00 0.00 36.94 3.36
208 209 3.615509 GAAACGGGTGGCCGATCCA 62.616 63.158 12.38 0.00 44.18 3.41
215 216 3.975246 TGGCCGATCCAAACGAAC 58.025 55.556 0.00 0.00 43.21 3.95
216 217 1.071642 TGGCCGATCCAAACGAACA 59.928 52.632 0.00 0.00 43.21 3.18
217 218 0.535328 TGGCCGATCCAAACGAACAA 60.535 50.000 0.00 0.00 43.21 2.83
218 219 0.594110 GGCCGATCCAAACGAACAAA 59.406 50.000 0.00 0.00 34.01 2.83
219 220 1.001158 GGCCGATCCAAACGAACAAAA 60.001 47.619 0.00 0.00 34.01 2.44
220 221 2.544069 GGCCGATCCAAACGAACAAAAA 60.544 45.455 0.00 0.00 34.01 1.94
245 246 3.033185 GACAAATGTGTCGTTCGTTTGG 58.967 45.455 0.00 7.59 44.58 3.28
246 247 1.778591 CAAATGTGTCGTTCGTTTGGC 59.221 47.619 11.16 0.00 37.82 4.52
247 248 1.305201 AATGTGTCGTTCGTTTGGCT 58.695 45.000 0.00 0.00 0.00 4.75
248 249 0.865769 ATGTGTCGTTCGTTTGGCTC 59.134 50.000 0.00 0.00 0.00 4.70
249 250 1.200839 GTGTCGTTCGTTTGGCTCG 59.799 57.895 0.00 0.00 0.00 5.03
250 251 1.952133 TGTCGTTCGTTTGGCTCGG 60.952 57.895 0.00 0.00 0.00 4.63
251 252 3.039588 TCGTTCGTTTGGCTCGGC 61.040 61.111 0.00 0.00 0.00 5.54
252 253 4.424430 CGTTCGTTTGGCTCGGCG 62.424 66.667 0.00 0.00 0.00 6.46
253 254 4.736631 GTTCGTTTGGCTCGGCGC 62.737 66.667 0.00 0.00 38.13 6.53
257 258 4.736631 GTTTGGCTCGGCGCGTTC 62.737 66.667 8.43 0.00 40.44 3.95
266 267 3.652000 GGCGCGTTCCCGTTTCAA 61.652 61.111 8.43 0.00 36.15 2.69
267 268 2.426261 GCGCGTTCCCGTTTCAAC 60.426 61.111 8.43 0.00 36.15 3.18
268 269 2.888998 GCGCGTTCCCGTTTCAACT 61.889 57.895 8.43 0.00 36.15 3.16
269 270 1.644913 CGCGTTCCCGTTTCAACTT 59.355 52.632 0.00 0.00 36.15 2.66
270 271 0.028374 CGCGTTCCCGTTTCAACTTT 59.972 50.000 0.00 0.00 36.15 2.66
271 272 1.472990 GCGTTCCCGTTTCAACTTTG 58.527 50.000 0.00 0.00 36.15 2.77
272 273 1.472990 CGTTCCCGTTTCAACTTTGC 58.527 50.000 0.00 0.00 0.00 3.68
273 274 1.064952 CGTTCCCGTTTCAACTTTGCT 59.935 47.619 0.00 0.00 0.00 3.91
274 275 2.478879 CGTTCCCGTTTCAACTTTGCTT 60.479 45.455 0.00 0.00 0.00 3.91
275 276 3.113322 GTTCCCGTTTCAACTTTGCTTC 58.887 45.455 0.00 0.00 0.00 3.86
276 277 2.650322 TCCCGTTTCAACTTTGCTTCT 58.350 42.857 0.00 0.00 0.00 2.85
277 278 3.020984 TCCCGTTTCAACTTTGCTTCTT 58.979 40.909 0.00 0.00 0.00 2.52
278 279 3.115554 CCCGTTTCAACTTTGCTTCTTG 58.884 45.455 0.00 0.00 0.00 3.02
279 280 3.428862 CCCGTTTCAACTTTGCTTCTTGT 60.429 43.478 0.00 0.00 0.00 3.16
280 281 4.201970 CCCGTTTCAACTTTGCTTCTTGTA 60.202 41.667 0.00 0.00 0.00 2.41
281 282 5.336744 CCGTTTCAACTTTGCTTCTTGTAA 58.663 37.500 0.00 0.00 0.00 2.41
282 283 5.455525 CCGTTTCAACTTTGCTTCTTGTAAG 59.544 40.000 0.00 0.00 0.00 2.34
283 284 5.052370 CGTTTCAACTTTGCTTCTTGTAAGC 60.052 40.000 2.81 2.81 43.29 3.09
284 285 5.835113 TTCAACTTTGCTTCTTGTAAGCT 57.165 34.783 10.74 0.00 43.38 3.74
285 286 5.835113 TCAACTTTGCTTCTTGTAAGCTT 57.165 34.783 3.48 3.48 43.38 3.74
286 287 5.581605 TCAACTTTGCTTCTTGTAAGCTTG 58.418 37.500 9.86 7.07 43.38 4.01
287 288 4.574599 ACTTTGCTTCTTGTAAGCTTGG 57.425 40.909 9.86 0.00 43.38 3.61
288 289 3.954258 ACTTTGCTTCTTGTAAGCTTGGT 59.046 39.130 9.86 4.41 43.38 3.67
289 290 5.130350 ACTTTGCTTCTTGTAAGCTTGGTA 58.870 37.500 9.86 0.00 43.38 3.25
290 291 5.770162 ACTTTGCTTCTTGTAAGCTTGGTAT 59.230 36.000 9.86 0.00 43.38 2.73
291 292 6.940298 ACTTTGCTTCTTGTAAGCTTGGTATA 59.060 34.615 9.86 0.00 43.38 1.47
292 293 7.447238 ACTTTGCTTCTTGTAAGCTTGGTATAA 59.553 33.333 9.86 0.00 43.38 0.98
293 294 7.753309 TTGCTTCTTGTAAGCTTGGTATAAA 57.247 32.000 9.86 0.00 43.38 1.40
294 295 7.938140 TGCTTCTTGTAAGCTTGGTATAAAT 57.062 32.000 9.86 0.00 43.38 1.40
295 296 9.456147 TTGCTTCTTGTAAGCTTGGTATAAATA 57.544 29.630 9.86 0.00 43.38 1.40
296 297 9.109393 TGCTTCTTGTAAGCTTGGTATAAATAG 57.891 33.333 9.86 0.00 43.38 1.73
297 298 8.070769 GCTTCTTGTAAGCTTGGTATAAATAGC 58.929 37.037 9.86 3.64 40.01 2.97
298 299 9.331282 CTTCTTGTAAGCTTGGTATAAATAGCT 57.669 33.333 9.86 0.00 45.35 3.32
299 300 8.888579 TCTTGTAAGCTTGGTATAAATAGCTC 57.111 34.615 9.86 0.00 42.79 4.09
300 301 8.482943 TCTTGTAAGCTTGGTATAAATAGCTCA 58.517 33.333 9.86 0.00 42.79 4.26
301 302 8.433421 TTGTAAGCTTGGTATAAATAGCTCAC 57.567 34.615 9.86 0.00 42.79 3.51
302 303 7.792032 TGTAAGCTTGGTATAAATAGCTCACT 58.208 34.615 9.86 0.00 42.79 3.41
303 304 8.265055 TGTAAGCTTGGTATAAATAGCTCACTT 58.735 33.333 9.86 4.43 42.79 3.16
304 305 7.559590 AAGCTTGGTATAAATAGCTCACTTG 57.440 36.000 0.00 0.00 42.79 3.16
305 306 5.529060 AGCTTGGTATAAATAGCTCACTTGC 59.471 40.000 0.00 0.00 39.67 4.01
306 307 5.559035 GCTTGGTATAAATAGCTCACTTGCG 60.559 44.000 0.00 0.00 38.13 4.85
307 308 4.377021 TGGTATAAATAGCTCACTTGCGG 58.623 43.478 0.00 0.00 38.13 5.69
308 309 3.746492 GGTATAAATAGCTCACTTGCGGG 59.254 47.826 0.00 0.00 38.13 6.13
309 310 3.838244 ATAAATAGCTCACTTGCGGGA 57.162 42.857 0.00 0.00 38.13 5.14
310 311 2.717639 AAATAGCTCACTTGCGGGAT 57.282 45.000 0.00 0.00 38.13 3.85
311 312 2.246719 AATAGCTCACTTGCGGGATC 57.753 50.000 0.00 0.00 38.13 3.36
312 313 1.418334 ATAGCTCACTTGCGGGATCT 58.582 50.000 0.00 0.00 38.13 2.75
313 314 2.067365 TAGCTCACTTGCGGGATCTA 57.933 50.000 0.00 0.00 38.13 1.98
314 315 1.195115 AGCTCACTTGCGGGATCTAA 58.805 50.000 0.00 0.00 38.13 2.10
315 316 1.765314 AGCTCACTTGCGGGATCTAAT 59.235 47.619 0.00 0.00 38.13 1.73
316 317 2.139118 GCTCACTTGCGGGATCTAATC 58.861 52.381 0.00 0.00 0.00 1.75
317 318 2.224161 GCTCACTTGCGGGATCTAATCT 60.224 50.000 0.00 0.00 0.00 2.40
318 319 3.648009 CTCACTTGCGGGATCTAATCTC 58.352 50.000 0.00 0.00 0.00 2.75
319 320 3.031013 TCACTTGCGGGATCTAATCTCA 58.969 45.455 0.00 0.00 0.00 3.27
320 321 3.643320 TCACTTGCGGGATCTAATCTCAT 59.357 43.478 0.00 0.00 0.00 2.90
321 322 4.101585 TCACTTGCGGGATCTAATCTCATT 59.898 41.667 0.00 0.00 0.00 2.57
322 323 4.450419 CACTTGCGGGATCTAATCTCATTC 59.550 45.833 0.00 0.00 0.00 2.67
323 324 4.346418 ACTTGCGGGATCTAATCTCATTCT 59.654 41.667 0.00 0.00 0.00 2.40
324 325 5.540337 ACTTGCGGGATCTAATCTCATTCTA 59.460 40.000 0.00 0.00 0.00 2.10
325 326 5.392767 TGCGGGATCTAATCTCATTCTAC 57.607 43.478 0.00 0.00 0.00 2.59
326 327 4.082733 TGCGGGATCTAATCTCATTCTACG 60.083 45.833 0.00 0.00 0.00 3.51
327 328 4.675671 GCGGGATCTAATCTCATTCTACGG 60.676 50.000 0.00 0.00 0.00 4.02
328 329 4.142359 CGGGATCTAATCTCATTCTACGGG 60.142 50.000 0.00 0.00 0.00 5.28
329 330 5.017490 GGGATCTAATCTCATTCTACGGGA 58.983 45.833 0.00 0.00 0.00 5.14
330 331 5.480772 GGGATCTAATCTCATTCTACGGGAA 59.519 44.000 0.00 0.00 38.41 3.97
331 332 6.391537 GGATCTAATCTCATTCTACGGGAAC 58.608 44.000 0.00 0.00 36.70 3.62
332 333 6.015350 GGATCTAATCTCATTCTACGGGAACA 60.015 42.308 0.00 0.00 36.70 3.18
333 334 6.392625 TCTAATCTCATTCTACGGGAACAG 57.607 41.667 0.00 0.00 36.70 3.16
334 335 2.961526 TCTCATTCTACGGGAACAGC 57.038 50.000 0.00 0.00 36.70 4.40
335 336 2.457598 TCTCATTCTACGGGAACAGCT 58.542 47.619 0.00 0.00 36.70 4.24
336 337 2.832129 TCTCATTCTACGGGAACAGCTT 59.168 45.455 0.00 0.00 36.70 3.74
337 338 3.260884 TCTCATTCTACGGGAACAGCTTT 59.739 43.478 0.00 0.00 36.70 3.51
338 339 3.596214 TCATTCTACGGGAACAGCTTTC 58.404 45.455 0.00 0.00 36.70 2.62
339 340 3.007506 TCATTCTACGGGAACAGCTTTCA 59.992 43.478 9.75 0.00 36.70 2.69
340 341 3.695830 TTCTACGGGAACAGCTTTCAT 57.304 42.857 9.75 0.48 0.00 2.57
341 342 3.695830 TCTACGGGAACAGCTTTCATT 57.304 42.857 9.75 0.00 0.00 2.57
342 343 4.015872 TCTACGGGAACAGCTTTCATTT 57.984 40.909 9.75 0.00 0.00 2.32
343 344 4.000988 TCTACGGGAACAGCTTTCATTTC 58.999 43.478 9.75 0.00 0.00 2.17
344 345 2.863809 ACGGGAACAGCTTTCATTTCT 58.136 42.857 9.75 0.00 0.00 2.52
345 346 4.015872 ACGGGAACAGCTTTCATTTCTA 57.984 40.909 9.75 0.00 0.00 2.10
346 347 4.589908 ACGGGAACAGCTTTCATTTCTAT 58.410 39.130 9.75 0.00 0.00 1.98
347 348 4.636206 ACGGGAACAGCTTTCATTTCTATC 59.364 41.667 9.75 0.00 0.00 2.08
348 349 4.878397 CGGGAACAGCTTTCATTTCTATCT 59.122 41.667 9.75 0.00 0.00 1.98
349 350 5.355350 CGGGAACAGCTTTCATTTCTATCTT 59.645 40.000 9.75 0.00 0.00 2.40
350 351 6.127897 CGGGAACAGCTTTCATTTCTATCTTT 60.128 38.462 9.75 0.00 0.00 2.52
351 352 7.575720 CGGGAACAGCTTTCATTTCTATCTTTT 60.576 37.037 9.75 0.00 0.00 2.27
352 353 7.543520 GGGAACAGCTTTCATTTCTATCTTTTG 59.456 37.037 9.75 0.00 0.00 2.44
353 354 7.543520 GGAACAGCTTTCATTTCTATCTTTTGG 59.456 37.037 9.75 0.00 0.00 3.28
354 355 6.393171 ACAGCTTTCATTTCTATCTTTTGGC 58.607 36.000 0.00 0.00 0.00 4.52
355 356 6.210185 ACAGCTTTCATTTCTATCTTTTGGCT 59.790 34.615 0.00 0.00 0.00 4.75
356 357 7.095270 CAGCTTTCATTTCTATCTTTTGGCTT 58.905 34.615 0.00 0.00 0.00 4.35
357 358 8.246180 CAGCTTTCATTTCTATCTTTTGGCTTA 58.754 33.333 0.00 0.00 0.00 3.09
358 359 8.246871 AGCTTTCATTTCTATCTTTTGGCTTAC 58.753 33.333 0.00 0.00 0.00 2.34
359 360 8.246871 GCTTTCATTTCTATCTTTTGGCTTACT 58.753 33.333 0.00 0.00 0.00 2.24
366 367 9.787435 TTTCTATCTTTTGGCTTACTTTAGTGA 57.213 29.630 0.00 0.00 0.00 3.41
367 368 9.959721 TTCTATCTTTTGGCTTACTTTAGTGAT 57.040 29.630 0.00 0.00 0.00 3.06
368 369 9.601217 TCTATCTTTTGGCTTACTTTAGTGATC 57.399 33.333 0.00 0.00 0.00 2.92
369 370 9.606631 CTATCTTTTGGCTTACTTTAGTGATCT 57.393 33.333 0.00 0.00 0.00 2.75
371 372 9.959721 ATCTTTTGGCTTACTTTAGTGATCTAA 57.040 29.630 0.00 0.00 34.76 2.10
372 373 9.787435 TCTTTTGGCTTACTTTAGTGATCTAAA 57.213 29.630 0.00 0.00 41.87 1.85
373 374 9.827411 CTTTTGGCTTACTTTAGTGATCTAAAC 57.173 33.333 0.00 0.00 40.05 2.01
374 375 7.591006 TTGGCTTACTTTAGTGATCTAAACG 57.409 36.000 0.00 0.00 40.05 3.60
375 376 5.579511 TGGCTTACTTTAGTGATCTAAACGC 59.420 40.000 0.00 0.00 40.05 4.84
376 377 5.811100 GGCTTACTTTAGTGATCTAAACGCT 59.189 40.000 0.00 0.00 40.05 5.07
377 378 6.976925 GGCTTACTTTAGTGATCTAAACGCTA 59.023 38.462 0.00 0.00 40.05 4.26
378 379 7.167801 GGCTTACTTTAGTGATCTAAACGCTAG 59.832 40.741 0.00 0.00 40.05 3.42
379 380 7.701501 GCTTACTTTAGTGATCTAAACGCTAGT 59.298 37.037 0.00 0.00 40.05 2.57
397 398 9.837525 AACGCTAGTATTATATTTCTTACGGAG 57.162 33.333 0.00 0.00 0.00 4.63
398 399 7.967303 ACGCTAGTATTATATTTCTTACGGAGC 59.033 37.037 0.00 0.00 0.00 4.70
399 400 7.163845 CGCTAGTATTATATTTCTTACGGAGCG 59.836 40.741 13.03 13.03 41.17 5.03
400 401 8.180267 GCTAGTATTATATTTCTTACGGAGCGA 58.820 37.037 0.00 0.00 0.00 4.93
401 402 9.705471 CTAGTATTATATTTCTTACGGAGCGAG 57.295 37.037 0.00 0.00 0.00 5.03
402 403 8.108551 AGTATTATATTTCTTACGGAGCGAGT 57.891 34.615 0.00 0.00 0.00 4.18
403 404 9.224267 AGTATTATATTTCTTACGGAGCGAGTA 57.776 33.333 0.00 0.00 0.00 2.59
404 405 9.488124 GTATTATATTTCTTACGGAGCGAGTAG 57.512 37.037 0.00 0.00 0.00 2.57
405 406 7.734924 TTATATTTCTTACGGAGCGAGTAGA 57.265 36.000 0.00 0.00 0.00 2.59
406 407 4.978083 ATTTCTTACGGAGCGAGTAGAA 57.022 40.909 0.00 0.00 0.00 2.10
407 408 4.352600 TTTCTTACGGAGCGAGTAGAAG 57.647 45.455 0.00 0.00 0.00 2.85
408 409 1.669779 TCTTACGGAGCGAGTAGAAGC 59.330 52.381 0.00 0.00 0.00 3.86
410 411 2.609427 TACGGAGCGAGTAGAAGCTA 57.391 50.000 0.00 0.00 44.69 3.32
411 412 1.970092 ACGGAGCGAGTAGAAGCTAT 58.030 50.000 0.00 0.00 44.69 2.97
412 413 1.604755 ACGGAGCGAGTAGAAGCTATG 59.395 52.381 0.00 0.00 44.69 2.23
413 414 1.068885 CGGAGCGAGTAGAAGCTATGG 60.069 57.143 0.00 0.00 44.69 2.74
414 415 1.336424 GGAGCGAGTAGAAGCTATGGC 60.336 57.143 0.00 0.00 44.69 4.40
415 416 1.338337 GAGCGAGTAGAAGCTATGGCA 59.662 52.381 3.10 0.00 44.69 4.92
416 417 1.757118 AGCGAGTAGAAGCTATGGCAA 59.243 47.619 3.10 0.00 42.60 4.52
417 418 2.168521 AGCGAGTAGAAGCTATGGCAAA 59.831 45.455 3.10 0.00 42.60 3.68
418 419 2.541762 GCGAGTAGAAGCTATGGCAAAG 59.458 50.000 3.10 0.00 41.70 2.77
419 420 3.738281 GCGAGTAGAAGCTATGGCAAAGA 60.738 47.826 3.10 0.00 41.70 2.52
420 421 4.047822 CGAGTAGAAGCTATGGCAAAGAG 58.952 47.826 3.10 0.00 41.70 2.85
421 422 4.202060 CGAGTAGAAGCTATGGCAAAGAGA 60.202 45.833 3.10 0.00 41.70 3.10
422 423 5.275067 AGTAGAAGCTATGGCAAAGAGAG 57.725 43.478 3.10 0.00 41.70 3.20
423 424 4.959210 AGTAGAAGCTATGGCAAAGAGAGA 59.041 41.667 3.10 0.00 41.70 3.10
424 425 4.135747 AGAAGCTATGGCAAAGAGAGAC 57.864 45.455 3.10 0.00 41.70 3.36
425 426 2.998316 AGCTATGGCAAAGAGAGACC 57.002 50.000 3.10 0.00 41.70 3.85
511 512 3.702048 TCCTCGGGCCGGACAAAG 61.702 66.667 27.98 15.51 0.00 2.77
526 527 4.759205 AAGCCCCCGTGCCAATCC 62.759 66.667 0.00 0.00 0.00 3.01
534 535 4.041762 GTGCCAATCCCCGGTCCA 62.042 66.667 0.00 0.00 0.00 4.02
535 536 3.020647 TGCCAATCCCCGGTCCAT 61.021 61.111 0.00 0.00 0.00 3.41
536 537 1.694525 TGCCAATCCCCGGTCCATA 60.695 57.895 0.00 0.00 0.00 2.74
626 639 6.377327 TCAATCGCTTCAAATTAATCCCTC 57.623 37.500 0.00 0.00 0.00 4.30
661 691 1.544314 GCCTACCAGCTTCATCCATCC 60.544 57.143 0.00 0.00 0.00 3.51
662 692 1.770658 CCTACCAGCTTCATCCATCCA 59.229 52.381 0.00 0.00 0.00 3.41
663 693 2.374504 CCTACCAGCTTCATCCATCCAT 59.625 50.000 0.00 0.00 0.00 3.41
664 694 2.653234 ACCAGCTTCATCCATCCATC 57.347 50.000 0.00 0.00 0.00 3.51
665 695 1.144503 ACCAGCTTCATCCATCCATCC 59.855 52.381 0.00 0.00 0.00 3.51
666 696 1.144298 CCAGCTTCATCCATCCATCCA 59.856 52.381 0.00 0.00 0.00 3.41
667 697 2.225041 CCAGCTTCATCCATCCATCCAT 60.225 50.000 0.00 0.00 0.00 3.41
668 698 3.082548 CAGCTTCATCCATCCATCCATC 58.917 50.000 0.00 0.00 0.00 3.51
669 699 2.987437 AGCTTCATCCATCCATCCATCT 59.013 45.455 0.00 0.00 0.00 2.90
670 700 3.009253 AGCTTCATCCATCCATCCATCTC 59.991 47.826 0.00 0.00 0.00 2.75
671 701 3.009253 GCTTCATCCATCCATCCATCTCT 59.991 47.826 0.00 0.00 0.00 3.10
672 702 4.834534 CTTCATCCATCCATCCATCTCTC 58.165 47.826 0.00 0.00 0.00 3.20
871 906 3.850752 ACACTGGAGAAGAAGGAAGAGA 58.149 45.455 0.00 0.00 0.00 3.10
872 907 4.227197 ACACTGGAGAAGAAGGAAGAGAA 58.773 43.478 0.00 0.00 0.00 2.87
873 908 4.283212 ACACTGGAGAAGAAGGAAGAGAAG 59.717 45.833 0.00 0.00 0.00 2.85
874 909 4.526262 CACTGGAGAAGAAGGAAGAGAAGA 59.474 45.833 0.00 0.00 0.00 2.87
875 910 4.772100 ACTGGAGAAGAAGGAAGAGAAGAG 59.228 45.833 0.00 0.00 0.00 2.85
902 937 2.178580 CAAGAGAGGAGAAGGAGCTGT 58.821 52.381 0.00 0.00 0.00 4.40
905 940 0.612744 AGAGGAGAAGGAGCTGTTGC 59.387 55.000 0.00 0.00 40.05 4.17
970 1008 1.818674 CAGTTATTGCCACCCCTGTTC 59.181 52.381 0.00 0.00 0.00 3.18
1540 1606 4.097361 GGGGTGAAGCGGGAGTCC 62.097 72.222 0.00 0.00 0.00 3.85
1546 1612 1.751927 GAAGCGGGAGTCCTACGGA 60.752 63.158 9.58 0.00 0.00 4.69
1831 1897 0.033504 CCTCCGATTACATCCCACGG 59.966 60.000 0.00 0.00 44.09 4.94
2333 2408 2.738013 AGCTACACCAGTTAACGTCC 57.262 50.000 0.00 0.00 0.00 4.79
2344 2419 2.056577 GTTAACGTCCCGTCTTGACTG 58.943 52.381 0.00 0.00 39.99 3.51
2346 2421 1.321474 AACGTCCCGTCTTGACTGTA 58.679 50.000 0.00 0.00 39.99 2.74
2349 2424 1.135746 CGTCCCGTCTTGACTGTACTC 60.136 57.143 0.00 0.00 0.00 2.59
2422 2507 0.717224 GCATTTCACTGCCGCAAATG 59.283 50.000 10.05 10.05 39.52 2.32
2423 2508 1.669502 GCATTTCACTGCCGCAAATGA 60.670 47.619 16.30 10.35 39.06 2.57
2424 2509 2.674954 CATTTCACTGCCGCAAATGAA 58.325 42.857 13.31 13.31 39.06 2.57
2425 2510 3.255725 CATTTCACTGCCGCAAATGAAT 58.744 40.909 16.56 7.76 39.06 2.57
2546 2633 1.467342 GAACGCACGCCCTTAGAAATT 59.533 47.619 0.00 0.00 0.00 1.82
2558 2645 5.699839 CCCTTAGAAATTTGAACGAGGTTG 58.300 41.667 0.00 0.00 0.00 3.77
2561 2648 6.016610 CCTTAGAAATTTGAACGAGGTTGGAA 60.017 38.462 0.00 0.00 0.00 3.53
2592 2679 9.614792 ACTAGCTAATTCAAAAATAGACCGAAT 57.385 29.630 0.00 0.00 0.00 3.34
2595 2682 9.788960 AGCTAATTCAAAAATAGACCGAATTTC 57.211 29.630 0.00 0.00 37.45 2.17
2894 3036 1.202842 TGGAGCGTCTGGGATACGATA 60.203 52.381 0.00 0.00 42.90 2.92
2895 3037 2.093106 GGAGCGTCTGGGATACGATAT 58.907 52.381 0.00 0.00 42.90 1.63
3026 3172 7.586300 CGAACAAAACAACCTAAATACACTGAG 59.414 37.037 0.00 0.00 0.00 3.35
3028 3174 7.927048 ACAAAACAACCTAAATACACTGAGTC 58.073 34.615 0.00 0.00 0.00 3.36
3029 3175 7.554835 ACAAAACAACCTAAATACACTGAGTCA 59.445 33.333 0.00 0.00 0.00 3.41
3030 3176 7.492352 AAACAACCTAAATACACTGAGTCAC 57.508 36.000 0.00 0.00 0.00 3.67
3033 3179 5.407407 ACCTAAATACACTGAGTCACTGG 57.593 43.478 5.00 0.00 0.00 4.00
3034 3180 4.184629 CCTAAATACACTGAGTCACTGGC 58.815 47.826 5.00 0.00 0.00 4.85
3035 3181 4.081420 CCTAAATACACTGAGTCACTGGCT 60.081 45.833 5.00 0.00 0.00 4.75
3036 3182 5.127194 CCTAAATACACTGAGTCACTGGCTA 59.873 44.000 5.00 0.00 0.00 3.93
3066 3212 2.512692 TGCATGCCAGACCTAACAAT 57.487 45.000 16.68 0.00 0.00 2.71
3092 3238 3.087906 GTATCCCCAGTGGCCGGT 61.088 66.667 2.61 0.00 0.00 5.28
3108 3254 1.379843 GGTGCCATGTTTCCCCGAT 60.380 57.895 0.00 0.00 0.00 4.18
3131 3283 3.258123 GTGTAGGGTGGTTTTCTACGGTA 59.742 47.826 0.00 0.00 36.94 4.02
3164 3318 0.673333 TCTAATGCCGTGTGTGCCTG 60.673 55.000 0.00 0.00 0.00 4.85
3171 3325 3.649986 GTGTGTGCCTGTGACCGC 61.650 66.667 0.00 0.00 0.00 5.68
3423 3582 0.528033 CAGAGCAGATGAGCACGGAG 60.528 60.000 0.00 0.00 36.85 4.63
3424 3583 0.682532 AGAGCAGATGAGCACGGAGA 60.683 55.000 0.00 0.00 36.85 3.71
3425 3584 0.527385 GAGCAGATGAGCACGGAGAC 60.527 60.000 0.00 0.00 36.85 3.36
3458 3617 4.783621 GGCCATGGCGTCAGAGCA 62.784 66.667 29.90 0.00 43.06 4.26
3489 3648 3.580193 GCCACGGCTGCATGCTAG 61.580 66.667 20.33 15.13 42.39 3.42
3506 3665 0.179015 TAGCTCTACTGCCGCTAGCT 60.179 55.000 13.93 0.00 45.14 3.32
3507 3666 0.179015 AGCTCTACTGCCGCTAGCTA 60.179 55.000 13.93 0.00 41.56 3.32
3509 3668 0.239879 CTCTACTGCCGCTAGCTAGC 59.760 60.000 31.88 31.88 45.62 3.42
3510 3669 1.173444 TCTACTGCCGCTAGCTAGCC 61.173 60.000 34.27 23.65 46.34 3.93
3511 3670 1.152735 TACTGCCGCTAGCTAGCCT 60.153 57.895 34.27 16.96 46.34 4.58
3512 3671 1.456196 TACTGCCGCTAGCTAGCCTG 61.456 60.000 34.27 26.85 46.34 4.85
3513 3672 2.759973 TGCCGCTAGCTAGCCTGT 60.760 61.111 34.27 0.00 46.34 4.00
3514 3673 1.455032 TGCCGCTAGCTAGCCTGTA 60.455 57.895 34.27 23.75 46.34 2.74
3515 3674 1.287503 GCCGCTAGCTAGCCTGTAG 59.712 63.158 34.27 21.84 46.34 2.74
3678 7383 5.106118 ACATCCATCCATTCTCTATCGTACG 60.106 44.000 9.53 9.53 0.00 3.67
3679 7384 4.395625 TCCATCCATTCTCTATCGTACGT 58.604 43.478 16.05 5.39 0.00 3.57
3680 7385 4.215613 TCCATCCATTCTCTATCGTACGTG 59.784 45.833 16.05 7.21 0.00 4.49
3681 7386 4.476862 CATCCATTCTCTATCGTACGTGG 58.523 47.826 16.05 12.67 0.00 4.94
3682 7387 3.548770 TCCATTCTCTATCGTACGTGGT 58.451 45.455 16.05 5.54 0.00 4.16
3743 7448 1.226859 CATGCATGCGGCTTTCTGG 60.227 57.895 14.93 0.00 45.15 3.86
3838 7545 2.860971 AGGAGGGGCAGGCTTTGT 60.861 61.111 0.00 0.00 0.00 2.83
3904 7611 3.168528 GGAGGGGGCTATCGGCAA 61.169 66.667 0.00 0.00 44.01 4.52
3926 7634 2.816958 CTAGCTGTGCCTGTGCCG 60.817 66.667 0.00 0.00 36.33 5.69
3990 7698 3.136123 CGGGTCAATGCCTGCCTG 61.136 66.667 0.00 0.00 0.00 4.85
3991 7699 3.455469 GGGTCAATGCCTGCCTGC 61.455 66.667 0.00 0.00 0.00 4.85
3994 7702 3.664888 TCAATGCCTGCCTGCCCT 61.665 61.111 0.00 0.00 0.00 5.19
3995 7703 3.458163 CAATGCCTGCCTGCCCTG 61.458 66.667 0.00 0.00 0.00 4.45
4116 7884 1.878522 CCGGTTTCAGCCTCGATCG 60.879 63.158 9.36 9.36 0.00 3.69
4261 8033 3.837213 TGGTACGTTGACTAGCTACAC 57.163 47.619 0.00 0.00 0.00 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 6.311445 AGTGACTACATACGAAGCAAAATGAG 59.689 38.462 0.00 0.00 0.00 2.90
2 3 6.163476 AGTGACTACATACGAAGCAAAATGA 58.837 36.000 0.00 0.00 0.00 2.57
3 4 6.408858 AGTGACTACATACGAAGCAAAATG 57.591 37.500 0.00 0.00 0.00 2.32
4 5 5.288712 CGAGTGACTACATACGAAGCAAAAT 59.711 40.000 0.00 0.00 32.69 1.82
5 6 4.619760 CGAGTGACTACATACGAAGCAAAA 59.380 41.667 0.00 0.00 32.69 2.44
6 7 4.163552 CGAGTGACTACATACGAAGCAAA 58.836 43.478 0.00 0.00 32.69 3.68
7 8 3.189910 ACGAGTGACTACATACGAAGCAA 59.810 43.478 0.00 0.00 34.08 3.91
10 11 4.096311 CCAACGAGTGACTACATACGAAG 58.904 47.826 0.00 0.00 34.08 3.79
11 12 3.752747 TCCAACGAGTGACTACATACGAA 59.247 43.478 0.00 0.00 34.08 3.85
12 13 3.337358 TCCAACGAGTGACTACATACGA 58.663 45.455 0.00 0.00 34.08 3.43
13 14 3.752412 TCCAACGAGTGACTACATACG 57.248 47.619 0.00 0.00 35.21 3.06
14 15 5.892568 AGATTCCAACGAGTGACTACATAC 58.107 41.667 0.00 0.00 0.00 2.39
15 16 5.886474 AGAGATTCCAACGAGTGACTACATA 59.114 40.000 0.00 0.00 0.00 2.29
16 17 4.707448 AGAGATTCCAACGAGTGACTACAT 59.293 41.667 0.00 0.00 0.00 2.29
17 18 4.079970 AGAGATTCCAACGAGTGACTACA 58.920 43.478 0.00 0.00 0.00 2.74
18 19 4.705337 AGAGATTCCAACGAGTGACTAC 57.295 45.455 0.00 0.00 0.00 2.73
19 20 5.742063 TCTAGAGATTCCAACGAGTGACTA 58.258 41.667 0.00 0.00 0.00 2.59
20 21 4.590918 TCTAGAGATTCCAACGAGTGACT 58.409 43.478 0.00 0.00 0.00 3.41
21 22 4.966965 TCTAGAGATTCCAACGAGTGAC 57.033 45.455 0.00 0.00 0.00 3.67
22 23 5.710567 TCTTTCTAGAGATTCCAACGAGTGA 59.289 40.000 0.00 0.00 0.00 3.41
23 24 5.802956 GTCTTTCTAGAGATTCCAACGAGTG 59.197 44.000 0.00 0.00 0.00 3.51
24 25 5.712917 AGTCTTTCTAGAGATTCCAACGAGT 59.287 40.000 0.00 0.00 0.00 4.18
25 26 6.202516 AGTCTTTCTAGAGATTCCAACGAG 57.797 41.667 0.00 0.00 0.00 4.18
26 27 6.591750 AAGTCTTTCTAGAGATTCCAACGA 57.408 37.500 0.00 0.00 0.00 3.85
40 41 8.422566 CCTCCGTTCCTAAATATAAGTCTTTCT 58.577 37.037 0.00 0.00 0.00 2.52
41 42 7.656542 CCCTCCGTTCCTAAATATAAGTCTTTC 59.343 40.741 0.00 0.00 0.00 2.62
42 43 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
43 44 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
44 45 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
45 46 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
46 47 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
47 48 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
48 49 8.731591 AATACTCCCTCCGTTCCTAAATATAA 57.268 34.615 0.00 0.00 0.00 0.98
49 50 8.591072 CAAATACTCCCTCCGTTCCTAAATATA 58.409 37.037 0.00 0.00 0.00 0.86
50 51 7.450903 CAAATACTCCCTCCGTTCCTAAATAT 58.549 38.462 0.00 0.00 0.00 1.28
51 52 6.687139 GCAAATACTCCCTCCGTTCCTAAATA 60.687 42.308 0.00 0.00 0.00 1.40
52 53 5.681639 CAAATACTCCCTCCGTTCCTAAAT 58.318 41.667 0.00 0.00 0.00 1.40
53 54 4.624604 GCAAATACTCCCTCCGTTCCTAAA 60.625 45.833 0.00 0.00 0.00 1.85
54 55 3.118519 GCAAATACTCCCTCCGTTCCTAA 60.119 47.826 0.00 0.00 0.00 2.69
55 56 2.433239 GCAAATACTCCCTCCGTTCCTA 59.567 50.000 0.00 0.00 0.00 2.94
56 57 1.209747 GCAAATACTCCCTCCGTTCCT 59.790 52.381 0.00 0.00 0.00 3.36
57 58 1.209747 AGCAAATACTCCCTCCGTTCC 59.790 52.381 0.00 0.00 0.00 3.62
58 59 2.678336 CAAGCAAATACTCCCTCCGTTC 59.322 50.000 0.00 0.00 0.00 3.95
59 60 2.039879 ACAAGCAAATACTCCCTCCGTT 59.960 45.455 0.00 0.00 0.00 4.44
60 61 1.628846 ACAAGCAAATACTCCCTCCGT 59.371 47.619 0.00 0.00 0.00 4.69
61 62 2.009774 CACAAGCAAATACTCCCTCCG 58.990 52.381 0.00 0.00 0.00 4.63
62 63 3.350219 TCACAAGCAAATACTCCCTCC 57.650 47.619 0.00 0.00 0.00 4.30
63 64 5.904362 ATTTCACAAGCAAATACTCCCTC 57.096 39.130 0.00 0.00 0.00 4.30
64 65 6.183360 GCATATTTCACAAGCAAATACTCCCT 60.183 38.462 0.00 0.00 30.32 4.20
65 66 5.979517 GCATATTTCACAAGCAAATACTCCC 59.020 40.000 0.00 0.00 30.32 4.30
66 67 6.563422 TGCATATTTCACAAGCAAATACTCC 58.437 36.000 0.00 0.00 30.32 3.85
67 68 8.464770 TTTGCATATTTCACAAGCAAATACTC 57.535 30.769 6.77 0.00 46.49 2.59
73 74 5.599732 ACACTTTGCATATTTCACAAGCAA 58.400 33.333 0.00 0.00 42.74 3.91
74 75 5.199024 ACACTTTGCATATTTCACAAGCA 57.801 34.783 0.00 0.00 0.00 3.91
75 76 6.529463 AAACACTTTGCATATTTCACAAGC 57.471 33.333 0.00 0.00 0.00 4.01
77 78 9.755804 TCAATAAACACTTTGCATATTTCACAA 57.244 25.926 0.00 0.00 0.00 3.33
78 79 9.755804 TTCAATAAACACTTTGCATATTTCACA 57.244 25.926 0.00 0.00 0.00 3.58
84 85 9.941325 TCCATTTTCAATAAACACTTTGCATAT 57.059 25.926 0.00 0.00 0.00 1.78
85 86 9.421806 CTCCATTTTCAATAAACACTTTGCATA 57.578 29.630 0.00 0.00 0.00 3.14
86 87 7.388500 CCTCCATTTTCAATAAACACTTTGCAT 59.612 33.333 0.00 0.00 0.00 3.96
87 88 6.705381 CCTCCATTTTCAATAAACACTTTGCA 59.295 34.615 0.00 0.00 0.00 4.08
88 89 6.705825 ACCTCCATTTTCAATAAACACTTTGC 59.294 34.615 0.00 0.00 0.00 3.68
89 90 7.925483 TGACCTCCATTTTCAATAAACACTTTG 59.075 33.333 0.00 0.00 0.00 2.77
90 91 8.017418 TGACCTCCATTTTCAATAAACACTTT 57.983 30.769 0.00 0.00 0.00 2.66
91 92 7.595819 TGACCTCCATTTTCAATAAACACTT 57.404 32.000 0.00 0.00 0.00 3.16
92 93 6.294731 GCTGACCTCCATTTTCAATAAACACT 60.295 38.462 0.00 0.00 0.00 3.55
93 94 5.863935 GCTGACCTCCATTTTCAATAAACAC 59.136 40.000 0.00 0.00 0.00 3.32
94 95 5.047377 GGCTGACCTCCATTTTCAATAAACA 60.047 40.000 0.00 0.00 0.00 2.83
95 96 5.410924 GGCTGACCTCCATTTTCAATAAAC 58.589 41.667 0.00 0.00 0.00 2.01
96 97 4.157656 CGGCTGACCTCCATTTTCAATAAA 59.842 41.667 0.00 0.00 0.00 1.40
97 98 3.694072 CGGCTGACCTCCATTTTCAATAA 59.306 43.478 0.00 0.00 0.00 1.40
98 99 3.054728 TCGGCTGACCTCCATTTTCAATA 60.055 43.478 0.00 0.00 0.00 1.90
99 100 2.094675 CGGCTGACCTCCATTTTCAAT 58.905 47.619 0.00 0.00 0.00 2.57
100 101 1.073125 TCGGCTGACCTCCATTTTCAA 59.927 47.619 0.00 0.00 0.00 2.69
101 102 0.690192 TCGGCTGACCTCCATTTTCA 59.310 50.000 0.00 0.00 0.00 2.69
102 103 1.943340 GATCGGCTGACCTCCATTTTC 59.057 52.381 0.00 0.00 0.00 2.29
103 104 1.281867 TGATCGGCTGACCTCCATTTT 59.718 47.619 0.00 0.00 0.00 1.82
104 105 0.911769 TGATCGGCTGACCTCCATTT 59.088 50.000 0.00 0.00 0.00 2.32
105 106 0.179000 GTGATCGGCTGACCTCCATT 59.821 55.000 0.00 0.00 0.00 3.16
106 107 0.977627 TGTGATCGGCTGACCTCCAT 60.978 55.000 0.00 0.00 0.00 3.41
107 108 1.609210 TGTGATCGGCTGACCTCCA 60.609 57.895 0.00 0.00 0.00 3.86
108 109 1.153549 GTGTGATCGGCTGACCTCC 60.154 63.158 0.00 0.00 0.00 4.30
109 110 1.153549 GGTGTGATCGGCTGACCTC 60.154 63.158 0.00 0.00 0.00 3.85
110 111 2.982130 GGTGTGATCGGCTGACCT 59.018 61.111 0.00 0.00 0.00 3.85
111 112 2.509336 CGGTGTGATCGGCTGACC 60.509 66.667 0.00 0.00 0.00 4.02
112 113 2.509336 CCGGTGTGATCGGCTGAC 60.509 66.667 0.00 0.00 41.07 3.51
118 119 1.264020 CCATATTTGCCGGTGTGATCG 59.736 52.381 1.90 0.00 0.00 3.69
119 120 1.608590 CCCATATTTGCCGGTGTGATC 59.391 52.381 1.90 0.00 0.00 2.92
120 121 1.214175 TCCCATATTTGCCGGTGTGAT 59.786 47.619 1.90 0.00 0.00 3.06
121 122 0.621082 TCCCATATTTGCCGGTGTGA 59.379 50.000 1.90 0.00 0.00 3.58
122 123 1.608590 GATCCCATATTTGCCGGTGTG 59.391 52.381 1.90 0.00 0.00 3.82
123 124 1.813862 CGATCCCATATTTGCCGGTGT 60.814 52.381 1.90 0.00 0.00 4.16
124 125 0.874390 CGATCCCATATTTGCCGGTG 59.126 55.000 1.90 0.00 0.00 4.94
125 126 0.762418 TCGATCCCATATTTGCCGGT 59.238 50.000 1.90 0.00 0.00 5.28
126 127 1.156736 GTCGATCCCATATTTGCCGG 58.843 55.000 0.00 0.00 0.00 6.13
127 128 0.790207 CGTCGATCCCATATTTGCCG 59.210 55.000 0.00 0.00 0.00 5.69
128 129 0.517316 GCGTCGATCCCATATTTGCC 59.483 55.000 0.00 0.00 0.00 4.52
129 130 0.163788 CGCGTCGATCCCATATTTGC 59.836 55.000 0.00 0.00 0.00 3.68
130 131 1.497991 ACGCGTCGATCCCATATTTG 58.502 50.000 5.58 0.00 0.00 2.32
131 132 1.864711 CAACGCGTCGATCCCATATTT 59.135 47.619 14.44 0.00 0.00 1.40
132 133 1.497991 CAACGCGTCGATCCCATATT 58.502 50.000 14.44 0.00 0.00 1.28
133 134 0.319555 CCAACGCGTCGATCCCATAT 60.320 55.000 14.44 0.00 0.00 1.78
134 135 1.066752 CCAACGCGTCGATCCCATA 59.933 57.895 14.44 0.00 0.00 2.74
135 136 2.202878 CCAACGCGTCGATCCCAT 60.203 61.111 14.44 0.00 0.00 4.00
136 137 4.444838 CCCAACGCGTCGATCCCA 62.445 66.667 14.44 0.00 0.00 4.37
137 138 4.446413 ACCCAACGCGTCGATCCC 62.446 66.667 14.44 0.00 0.00 3.85
138 139 3.186047 CACCCAACGCGTCGATCC 61.186 66.667 14.44 0.00 0.00 3.36
139 140 3.849953 GCACCCAACGCGTCGATC 61.850 66.667 14.44 0.00 0.00 3.69
140 141 4.673298 TGCACCCAACGCGTCGAT 62.673 61.111 14.44 0.00 0.00 3.59
143 144 4.012895 CAGTGCACCCAACGCGTC 62.013 66.667 14.44 0.00 0.00 5.19
146 147 4.332637 CAGCAGTGCACCCAACGC 62.333 66.667 19.20 8.89 0.00 4.84
147 148 2.591429 TCAGCAGTGCACCCAACG 60.591 61.111 19.20 0.00 0.00 4.10
148 149 2.555547 GGTCAGCAGTGCACCCAAC 61.556 63.158 19.20 7.29 0.00 3.77
149 150 2.203337 GGTCAGCAGTGCACCCAA 60.203 61.111 19.20 0.00 0.00 4.12
152 153 0.107017 ATATGGGTCAGCAGTGCACC 60.107 55.000 19.20 16.70 0.00 5.01
153 154 1.303309 GATATGGGTCAGCAGTGCAC 58.697 55.000 19.20 9.40 0.00 4.57
154 155 0.911053 TGATATGGGTCAGCAGTGCA 59.089 50.000 19.20 0.00 0.00 4.57
155 156 2.042686 TTGATATGGGTCAGCAGTGC 57.957 50.000 7.13 7.13 0.00 4.40
156 157 4.701651 TCTTTTTGATATGGGTCAGCAGTG 59.298 41.667 0.00 0.00 0.00 3.66
157 158 4.922206 TCTTTTTGATATGGGTCAGCAGT 58.078 39.130 0.00 0.00 0.00 4.40
158 159 4.337555 CCTCTTTTTGATATGGGTCAGCAG 59.662 45.833 0.00 0.00 0.00 4.24
159 160 4.018506 TCCTCTTTTTGATATGGGTCAGCA 60.019 41.667 0.00 0.00 0.00 4.41
160 161 4.336713 GTCCTCTTTTTGATATGGGTCAGC 59.663 45.833 0.00 0.00 0.00 4.26
161 162 4.572389 CGTCCTCTTTTTGATATGGGTCAG 59.428 45.833 0.00 0.00 0.00 3.51
162 163 4.513442 CGTCCTCTTTTTGATATGGGTCA 58.487 43.478 0.00 0.00 0.00 4.02
163 164 3.877508 CCGTCCTCTTTTTGATATGGGTC 59.122 47.826 0.00 0.00 0.00 4.46
164 165 3.521937 TCCGTCCTCTTTTTGATATGGGT 59.478 43.478 0.00 0.00 0.00 4.51
165 166 3.877508 GTCCGTCCTCTTTTTGATATGGG 59.122 47.826 0.00 0.00 0.00 4.00
166 167 4.332819 GTGTCCGTCCTCTTTTTGATATGG 59.667 45.833 0.00 0.00 0.00 2.74
167 168 4.032900 CGTGTCCGTCCTCTTTTTGATATG 59.967 45.833 0.00 0.00 0.00 1.78
168 169 4.081862 TCGTGTCCGTCCTCTTTTTGATAT 60.082 41.667 0.00 0.00 35.01 1.63
169 170 3.256383 TCGTGTCCGTCCTCTTTTTGATA 59.744 43.478 0.00 0.00 35.01 2.15
170 171 2.036733 TCGTGTCCGTCCTCTTTTTGAT 59.963 45.455 0.00 0.00 35.01 2.57
171 172 1.409790 TCGTGTCCGTCCTCTTTTTGA 59.590 47.619 0.00 0.00 35.01 2.69
172 173 1.860676 TCGTGTCCGTCCTCTTTTTG 58.139 50.000 0.00 0.00 35.01 2.44
173 174 2.607631 TTCGTGTCCGTCCTCTTTTT 57.392 45.000 0.00 0.00 35.01 1.94
174 175 2.207590 GTTTCGTGTCCGTCCTCTTTT 58.792 47.619 0.00 0.00 35.01 2.27
175 176 1.861971 GTTTCGTGTCCGTCCTCTTT 58.138 50.000 0.00 0.00 35.01 2.52
176 177 0.318445 CGTTTCGTGTCCGTCCTCTT 60.318 55.000 0.00 0.00 35.01 2.85
177 178 1.285023 CGTTTCGTGTCCGTCCTCT 59.715 57.895 0.00 0.00 35.01 3.69
178 179 1.731969 CCGTTTCGTGTCCGTCCTC 60.732 63.158 0.00 0.00 35.01 3.71
179 180 2.337532 CCGTTTCGTGTCCGTCCT 59.662 61.111 0.00 0.00 35.01 3.85
180 181 2.735857 CCCGTTTCGTGTCCGTCC 60.736 66.667 0.00 0.00 35.01 4.79
181 182 2.028043 ACCCGTTTCGTGTCCGTC 59.972 61.111 0.00 0.00 35.01 4.79
182 183 2.279650 CACCCGTTTCGTGTCCGT 60.280 61.111 0.00 0.00 35.01 4.69
183 184 3.039588 CCACCCGTTTCGTGTCCG 61.040 66.667 0.00 0.00 0.00 4.79
184 185 3.351416 GCCACCCGTTTCGTGTCC 61.351 66.667 0.00 0.00 0.00 4.02
185 186 3.351416 GGCCACCCGTTTCGTGTC 61.351 66.667 0.00 0.00 0.00 3.67
199 200 0.594110 TTTGTTCGTTTGGATCGGCC 59.406 50.000 0.00 0.00 37.10 6.13
200 201 2.409152 TTTTGTTCGTTTGGATCGGC 57.591 45.000 0.00 0.00 0.00 5.54
225 226 2.793237 GCCAAACGAACGACACATTTGT 60.793 45.455 0.14 0.00 39.32 2.83
226 227 1.778591 GCCAAACGAACGACACATTTG 59.221 47.619 0.14 1.32 0.00 2.32
227 228 1.673920 AGCCAAACGAACGACACATTT 59.326 42.857 0.14 0.00 0.00 2.32
228 229 1.263217 GAGCCAAACGAACGACACATT 59.737 47.619 0.14 0.00 0.00 2.71
229 230 0.865769 GAGCCAAACGAACGACACAT 59.134 50.000 0.14 0.00 0.00 3.21
230 231 1.484227 CGAGCCAAACGAACGACACA 61.484 55.000 0.14 0.00 0.00 3.72
231 232 1.200839 CGAGCCAAACGAACGACAC 59.799 57.895 0.14 0.00 0.00 3.67
232 233 1.952133 CCGAGCCAAACGAACGACA 60.952 57.895 0.14 0.00 0.00 4.35
233 234 2.851104 CCGAGCCAAACGAACGAC 59.149 61.111 0.14 0.00 0.00 4.34
234 235 3.039588 GCCGAGCCAAACGAACGA 61.040 61.111 0.14 0.00 0.00 3.85
235 236 4.424430 CGCCGAGCCAAACGAACG 62.424 66.667 0.00 0.00 0.00 3.95
236 237 4.736631 GCGCCGAGCCAAACGAAC 62.737 66.667 0.00 0.00 40.81 3.95
240 241 4.736631 GAACGCGCCGAGCCAAAC 62.737 66.667 5.73 0.00 44.76 2.93
254 255 2.863401 AGCAAAGTTGAAACGGGAAC 57.137 45.000 0.00 0.00 0.00 3.62
255 256 3.020984 AGAAGCAAAGTTGAAACGGGAA 58.979 40.909 0.00 0.00 0.00 3.97
256 257 2.650322 AGAAGCAAAGTTGAAACGGGA 58.350 42.857 0.00 0.00 0.00 5.14
257 258 3.115554 CAAGAAGCAAAGTTGAAACGGG 58.884 45.455 0.00 0.00 0.00 5.28
258 259 3.769536 ACAAGAAGCAAAGTTGAAACGG 58.230 40.909 0.00 0.00 0.00 4.44
259 260 5.052370 GCTTACAAGAAGCAAAGTTGAAACG 60.052 40.000 4.45 0.00 42.56 3.60
260 261 6.036470 AGCTTACAAGAAGCAAAGTTGAAAC 58.964 36.000 11.56 0.00 45.30 2.78
261 262 6.207691 AGCTTACAAGAAGCAAAGTTGAAA 57.792 33.333 11.56 0.00 45.30 2.69
262 263 5.835113 AGCTTACAAGAAGCAAAGTTGAA 57.165 34.783 11.56 0.00 45.30 2.69
263 264 5.450412 CCAAGCTTACAAGAAGCAAAGTTGA 60.450 40.000 11.56 0.00 45.30 3.18
264 265 4.741676 CCAAGCTTACAAGAAGCAAAGTTG 59.258 41.667 11.56 6.95 45.30 3.16
265 266 4.402474 ACCAAGCTTACAAGAAGCAAAGTT 59.598 37.500 11.56 0.00 45.30 2.66
266 267 3.954258 ACCAAGCTTACAAGAAGCAAAGT 59.046 39.130 11.56 2.89 45.30 2.66
267 268 4.574599 ACCAAGCTTACAAGAAGCAAAG 57.425 40.909 11.56 2.33 45.30 2.77
268 269 7.753309 TTATACCAAGCTTACAAGAAGCAAA 57.247 32.000 11.56 0.00 45.30 3.68
269 270 7.753309 TTTATACCAAGCTTACAAGAAGCAA 57.247 32.000 11.56 0.00 45.30 3.91
270 271 7.938140 ATTTATACCAAGCTTACAAGAAGCA 57.062 32.000 11.56 0.00 45.30 3.91
271 272 8.070769 GCTATTTATACCAAGCTTACAAGAAGC 58.929 37.037 0.00 0.97 43.31 3.86
272 273 9.331282 AGCTATTTATACCAAGCTTACAAGAAG 57.669 33.333 0.00 0.00 42.52 2.85
273 274 9.326413 GAGCTATTTATACCAAGCTTACAAGAA 57.674 33.333 0.00 0.00 45.04 2.52
274 275 8.482943 TGAGCTATTTATACCAAGCTTACAAGA 58.517 33.333 0.00 0.00 45.04 3.02
275 276 8.552034 GTGAGCTATTTATACCAAGCTTACAAG 58.448 37.037 11.72 0.00 45.66 3.16
276 277 8.433421 GTGAGCTATTTATACCAAGCTTACAA 57.567 34.615 11.72 0.00 45.66 2.41
278 279 8.552034 CAAGTGAGCTATTTATACCAAGCTTAC 58.448 37.037 0.00 9.34 46.31 2.34
279 280 7.226720 GCAAGTGAGCTATTTATACCAAGCTTA 59.773 37.037 0.00 0.00 45.04 3.09
280 281 6.038714 GCAAGTGAGCTATTTATACCAAGCTT 59.961 38.462 0.00 0.00 45.04 3.74
282 283 5.559035 CGCAAGTGAGCTATTTATACCAAGC 60.559 44.000 0.00 0.00 35.16 4.01
283 284 5.050091 CCGCAAGTGAGCTATTTATACCAAG 60.050 44.000 0.00 0.00 0.00 3.61
284 285 4.814234 CCGCAAGTGAGCTATTTATACCAA 59.186 41.667 0.00 0.00 0.00 3.67
285 286 4.377021 CCGCAAGTGAGCTATTTATACCA 58.623 43.478 0.00 0.00 0.00 3.25
286 287 3.746492 CCCGCAAGTGAGCTATTTATACC 59.254 47.826 0.00 0.00 0.00 2.73
287 288 4.628074 TCCCGCAAGTGAGCTATTTATAC 58.372 43.478 0.00 0.00 0.00 1.47
288 289 4.948341 TCCCGCAAGTGAGCTATTTATA 57.052 40.909 0.00 0.00 0.00 0.98
289 290 3.838244 TCCCGCAAGTGAGCTATTTAT 57.162 42.857 0.00 0.00 0.00 1.40
290 291 3.388024 AGATCCCGCAAGTGAGCTATTTA 59.612 43.478 0.00 0.00 0.00 1.40
291 292 2.171448 AGATCCCGCAAGTGAGCTATTT 59.829 45.455 0.00 0.00 0.00 1.40
292 293 1.765314 AGATCCCGCAAGTGAGCTATT 59.235 47.619 0.00 0.00 0.00 1.73
293 294 1.418334 AGATCCCGCAAGTGAGCTAT 58.582 50.000 0.00 0.00 0.00 2.97
294 295 2.067365 TAGATCCCGCAAGTGAGCTA 57.933 50.000 0.00 0.00 0.00 3.32
295 296 1.195115 TTAGATCCCGCAAGTGAGCT 58.805 50.000 0.00 0.00 0.00 4.09
296 297 2.139118 GATTAGATCCCGCAAGTGAGC 58.861 52.381 0.00 0.00 0.00 4.26
297 298 3.068732 TGAGATTAGATCCCGCAAGTGAG 59.931 47.826 0.00 0.00 0.00 3.51
298 299 3.031013 TGAGATTAGATCCCGCAAGTGA 58.969 45.455 0.00 0.00 0.00 3.41
299 300 3.459232 TGAGATTAGATCCCGCAAGTG 57.541 47.619 0.00 0.00 0.00 3.16
300 301 4.346418 AGAATGAGATTAGATCCCGCAAGT 59.654 41.667 0.00 0.00 0.00 3.16
301 302 4.892433 AGAATGAGATTAGATCCCGCAAG 58.108 43.478 0.00 0.00 0.00 4.01
302 303 4.963318 AGAATGAGATTAGATCCCGCAA 57.037 40.909 0.00 0.00 0.00 4.85
303 304 4.082733 CGTAGAATGAGATTAGATCCCGCA 60.083 45.833 0.00 0.00 0.00 5.69
304 305 4.416620 CGTAGAATGAGATTAGATCCCGC 58.583 47.826 0.00 0.00 0.00 6.13
305 306 4.142359 CCCGTAGAATGAGATTAGATCCCG 60.142 50.000 0.00 0.00 0.00 5.14
306 307 5.017490 TCCCGTAGAATGAGATTAGATCCC 58.983 45.833 0.00 0.00 0.00 3.85
307 308 6.015350 TGTTCCCGTAGAATGAGATTAGATCC 60.015 42.308 0.00 0.00 36.69 3.36
308 309 6.982852 TGTTCCCGTAGAATGAGATTAGATC 58.017 40.000 0.00 0.00 36.69 2.75
309 310 6.517529 GCTGTTCCCGTAGAATGAGATTAGAT 60.518 42.308 0.00 0.00 36.69 1.98
310 311 5.221263 GCTGTTCCCGTAGAATGAGATTAGA 60.221 44.000 0.00 0.00 36.69 2.10
311 312 4.985409 GCTGTTCCCGTAGAATGAGATTAG 59.015 45.833 0.00 0.00 36.69 1.73
312 313 4.649674 AGCTGTTCCCGTAGAATGAGATTA 59.350 41.667 0.00 0.00 36.69 1.75
313 314 3.452627 AGCTGTTCCCGTAGAATGAGATT 59.547 43.478 0.00 0.00 36.69 2.40
314 315 3.034635 AGCTGTTCCCGTAGAATGAGAT 58.965 45.455 0.00 0.00 36.69 2.75
315 316 2.457598 AGCTGTTCCCGTAGAATGAGA 58.542 47.619 0.00 0.00 36.69 3.27
316 317 2.969628 AGCTGTTCCCGTAGAATGAG 57.030 50.000 0.00 0.00 36.69 2.90
317 318 3.007506 TGAAAGCTGTTCCCGTAGAATGA 59.992 43.478 0.00 0.00 36.69 2.57
318 319 3.334691 TGAAAGCTGTTCCCGTAGAATG 58.665 45.455 0.00 0.00 36.69 2.67
319 320 3.695830 TGAAAGCTGTTCCCGTAGAAT 57.304 42.857 0.00 0.00 36.69 2.40
320 321 3.695830 ATGAAAGCTGTTCCCGTAGAA 57.304 42.857 0.00 0.00 0.00 2.10
321 322 3.695830 AATGAAAGCTGTTCCCGTAGA 57.304 42.857 0.00 0.00 0.00 2.59
322 323 4.003648 AGAAATGAAAGCTGTTCCCGTAG 58.996 43.478 0.00 0.00 0.00 3.51
323 324 4.015872 AGAAATGAAAGCTGTTCCCGTA 57.984 40.909 0.00 0.00 0.00 4.02
324 325 2.863809 AGAAATGAAAGCTGTTCCCGT 58.136 42.857 0.00 0.00 0.00 5.28
325 326 4.878397 AGATAGAAATGAAAGCTGTTCCCG 59.122 41.667 0.00 0.00 0.00 5.14
326 327 6.765915 AAGATAGAAATGAAAGCTGTTCCC 57.234 37.500 0.00 0.00 0.00 3.97
327 328 7.543520 CCAAAAGATAGAAATGAAAGCTGTTCC 59.456 37.037 0.00 0.00 0.00 3.62
328 329 7.062722 GCCAAAAGATAGAAATGAAAGCTGTTC 59.937 37.037 0.00 0.00 0.00 3.18
329 330 6.870439 GCCAAAAGATAGAAATGAAAGCTGTT 59.130 34.615 0.00 0.00 0.00 3.16
330 331 6.210185 AGCCAAAAGATAGAAATGAAAGCTGT 59.790 34.615 0.00 0.00 0.00 4.40
331 332 6.628185 AGCCAAAAGATAGAAATGAAAGCTG 58.372 36.000 0.00 0.00 0.00 4.24
332 333 6.847421 AGCCAAAAGATAGAAATGAAAGCT 57.153 33.333 0.00 0.00 0.00 3.74
333 334 8.246871 AGTAAGCCAAAAGATAGAAATGAAAGC 58.753 33.333 0.00 0.00 0.00 3.51
340 341 9.787435 TCACTAAAGTAAGCCAAAAGATAGAAA 57.213 29.630 0.00 0.00 0.00 2.52
341 342 9.959721 ATCACTAAAGTAAGCCAAAAGATAGAA 57.040 29.630 0.00 0.00 0.00 2.10
342 343 9.601217 GATCACTAAAGTAAGCCAAAAGATAGA 57.399 33.333 0.00 0.00 0.00 1.98
343 344 9.606631 AGATCACTAAAGTAAGCCAAAAGATAG 57.393 33.333 0.00 0.00 0.00 2.08
345 346 9.959721 TTAGATCACTAAAGTAAGCCAAAAGAT 57.040 29.630 0.00 0.00 35.92 2.40
346 347 9.787435 TTTAGATCACTAAAGTAAGCCAAAAGA 57.213 29.630 0.00 0.00 41.71 2.52
347 348 9.827411 GTTTAGATCACTAAAGTAAGCCAAAAG 57.173 33.333 0.00 0.00 45.42 2.27
348 349 8.500773 CGTTTAGATCACTAAAGTAAGCCAAAA 58.499 33.333 0.00 0.00 45.42 2.44
349 350 7.360607 GCGTTTAGATCACTAAAGTAAGCCAAA 60.361 37.037 0.00 0.00 45.42 3.28
350 351 6.091713 GCGTTTAGATCACTAAAGTAAGCCAA 59.908 38.462 0.00 0.00 45.42 4.52
351 352 5.579511 GCGTTTAGATCACTAAAGTAAGCCA 59.420 40.000 0.00 0.00 45.42 4.75
352 353 5.811100 AGCGTTTAGATCACTAAAGTAAGCC 59.189 40.000 0.00 0.00 45.42 4.35
353 354 6.889019 AGCGTTTAGATCACTAAAGTAAGC 57.111 37.500 0.00 0.00 45.42 3.09
371 372 9.837525 CTCCGTAAGAAATATAATACTAGCGTT 57.162 33.333 0.00 0.00 43.02 4.84
372 373 7.967303 GCTCCGTAAGAAATATAATACTAGCGT 59.033 37.037 0.00 0.00 43.02 5.07
373 374 7.163845 CGCTCCGTAAGAAATATAATACTAGCG 59.836 40.741 0.00 0.00 43.02 4.26
374 375 8.180267 TCGCTCCGTAAGAAATATAATACTAGC 58.820 37.037 0.00 0.00 43.02 3.42
375 376 9.705471 CTCGCTCCGTAAGAAATATAATACTAG 57.295 37.037 0.00 0.00 43.02 2.57
376 377 9.224267 ACTCGCTCCGTAAGAAATATAATACTA 57.776 33.333 0.00 0.00 43.02 1.82
377 378 8.108551 ACTCGCTCCGTAAGAAATATAATACT 57.891 34.615 0.00 0.00 43.02 2.12
378 379 9.488124 CTACTCGCTCCGTAAGAAATATAATAC 57.512 37.037 0.00 0.00 43.02 1.89
379 380 9.440773 TCTACTCGCTCCGTAAGAAATATAATA 57.559 33.333 0.00 0.00 43.02 0.98
380 381 8.332996 TCTACTCGCTCCGTAAGAAATATAAT 57.667 34.615 0.00 0.00 43.02 1.28
381 382 7.734924 TCTACTCGCTCCGTAAGAAATATAA 57.265 36.000 0.00 0.00 43.02 0.98
382 383 7.572724 GCTTCTACTCGCTCCGTAAGAAATATA 60.573 40.741 0.00 0.00 43.02 0.86
383 384 6.630444 TTCTACTCGCTCCGTAAGAAATAT 57.370 37.500 0.00 0.00 43.02 1.28
384 385 5.505324 GCTTCTACTCGCTCCGTAAGAAATA 60.505 44.000 0.00 0.00 43.02 1.40
385 386 4.734108 GCTTCTACTCGCTCCGTAAGAAAT 60.734 45.833 0.00 0.00 43.02 2.17
386 387 3.427233 GCTTCTACTCGCTCCGTAAGAAA 60.427 47.826 0.00 0.00 43.02 2.52
387 388 2.097142 GCTTCTACTCGCTCCGTAAGAA 59.903 50.000 0.00 0.00 43.02 2.52
388 389 1.669779 GCTTCTACTCGCTCCGTAAGA 59.330 52.381 0.00 0.00 43.02 2.10
389 390 1.671845 AGCTTCTACTCGCTCCGTAAG 59.328 52.381 0.00 0.00 0.00 2.34
390 391 1.747709 AGCTTCTACTCGCTCCGTAA 58.252 50.000 0.00 0.00 0.00 3.18
391 392 2.609427 TAGCTTCTACTCGCTCCGTA 57.391 50.000 0.00 0.00 37.68 4.02
392 393 1.604755 CATAGCTTCTACTCGCTCCGT 59.395 52.381 0.00 0.00 37.68 4.69
393 394 1.068885 CCATAGCTTCTACTCGCTCCG 60.069 57.143 0.00 0.00 37.68 4.63
394 395 1.336424 GCCATAGCTTCTACTCGCTCC 60.336 57.143 0.00 0.00 37.68 4.70
395 396 1.338337 TGCCATAGCTTCTACTCGCTC 59.662 52.381 0.00 0.00 40.80 5.03
396 397 1.403814 TGCCATAGCTTCTACTCGCT 58.596 50.000 0.00 0.00 40.80 4.93
397 398 2.225068 TTGCCATAGCTTCTACTCGC 57.775 50.000 0.00 0.00 40.80 5.03
398 399 4.046938 TCTTTGCCATAGCTTCTACTCG 57.953 45.455 0.00 0.00 40.80 4.18
399 400 5.068460 TCTCTCTTTGCCATAGCTTCTACTC 59.932 44.000 0.00 0.00 40.80 2.59
400 401 4.959210 TCTCTCTTTGCCATAGCTTCTACT 59.041 41.667 0.00 0.00 40.80 2.57
401 402 5.047188 GTCTCTCTTTGCCATAGCTTCTAC 58.953 45.833 0.00 0.00 40.80 2.59
402 403 4.100189 GGTCTCTCTTTGCCATAGCTTCTA 59.900 45.833 0.00 0.00 40.80 2.10
403 404 3.118445 GGTCTCTCTTTGCCATAGCTTCT 60.118 47.826 0.00 0.00 40.80 2.85
404 405 3.118445 AGGTCTCTCTTTGCCATAGCTTC 60.118 47.826 0.00 0.00 40.80 3.86
405 406 2.843113 AGGTCTCTCTTTGCCATAGCTT 59.157 45.455 0.00 0.00 40.80 3.74
406 407 2.170187 CAGGTCTCTCTTTGCCATAGCT 59.830 50.000 0.00 0.00 40.80 3.32
407 408 2.559440 CAGGTCTCTCTTTGCCATAGC 58.441 52.381 0.00 0.00 40.48 2.97
408 409 2.768527 TCCAGGTCTCTCTTTGCCATAG 59.231 50.000 0.00 0.00 0.00 2.23
409 410 2.501723 GTCCAGGTCTCTCTTTGCCATA 59.498 50.000 0.00 0.00 0.00 2.74
410 411 1.280421 GTCCAGGTCTCTCTTTGCCAT 59.720 52.381 0.00 0.00 0.00 4.40
411 412 0.687354 GTCCAGGTCTCTCTTTGCCA 59.313 55.000 0.00 0.00 0.00 4.92
412 413 0.390472 CGTCCAGGTCTCTCTTTGCC 60.390 60.000 0.00 0.00 0.00 4.52
413 414 0.390472 CCGTCCAGGTCTCTCTTTGC 60.390 60.000 0.00 0.00 34.51 3.68
414 415 0.390472 GCCGTCCAGGTCTCTCTTTG 60.390 60.000 0.00 0.00 43.70 2.77
415 416 1.878656 CGCCGTCCAGGTCTCTCTTT 61.879 60.000 0.00 0.00 43.70 2.52
416 417 2.344203 CGCCGTCCAGGTCTCTCTT 61.344 63.158 0.00 0.00 43.70 2.85
417 418 2.752238 CGCCGTCCAGGTCTCTCT 60.752 66.667 0.00 0.00 43.70 3.10
418 419 3.827898 CCGCCGTCCAGGTCTCTC 61.828 72.222 0.00 0.00 43.70 3.20
518 519 1.694525 TATGGACCGGGGATTGGCA 60.695 57.895 6.32 0.00 0.00 4.92
529 530 1.062044 AGGAGGAAGAGGGTATGGACC 60.062 57.143 0.00 0.00 46.13 4.46
530 531 2.321719 GAGGAGGAAGAGGGTATGGAC 58.678 57.143 0.00 0.00 0.00 4.02
531 532 1.937350 TGAGGAGGAAGAGGGTATGGA 59.063 52.381 0.00 0.00 0.00 3.41
532 533 2.324541 CTGAGGAGGAAGAGGGTATGG 58.675 57.143 0.00 0.00 0.00 2.74
533 534 2.962421 GACTGAGGAGGAAGAGGGTATG 59.038 54.545 0.00 0.00 0.00 2.39
534 535 2.090999 GGACTGAGGAGGAAGAGGGTAT 60.091 54.545 0.00 0.00 0.00 2.73
535 536 1.288335 GGACTGAGGAGGAAGAGGGTA 59.712 57.143 0.00 0.00 0.00 3.69
536 537 0.041982 GGACTGAGGAGGAAGAGGGT 59.958 60.000 0.00 0.00 0.00 4.34
575 588 8.450964 CAGTGTAACAAGGTAATGAGTTATTGG 58.549 37.037 0.00 0.00 41.43 3.16
661 691 3.181430 TGAGAGGGAGAGAGAGATGGATG 60.181 52.174 0.00 0.00 0.00 3.51
662 692 3.062889 TGAGAGGGAGAGAGAGATGGAT 58.937 50.000 0.00 0.00 0.00 3.41
663 693 2.174639 GTGAGAGGGAGAGAGAGATGGA 59.825 54.545 0.00 0.00 0.00 3.41
664 694 2.586425 GTGAGAGGGAGAGAGAGATGG 58.414 57.143 0.00 0.00 0.00 3.51
665 695 2.586425 GGTGAGAGGGAGAGAGAGATG 58.414 57.143 0.00 0.00 0.00 2.90
666 696 1.499007 GGGTGAGAGGGAGAGAGAGAT 59.501 57.143 0.00 0.00 0.00 2.75
667 697 0.923358 GGGTGAGAGGGAGAGAGAGA 59.077 60.000 0.00 0.00 0.00 3.10
668 698 0.106217 GGGGTGAGAGGGAGAGAGAG 60.106 65.000 0.00 0.00 0.00 3.20
669 699 1.585651 GGGGGTGAGAGGGAGAGAGA 61.586 65.000 0.00 0.00 0.00 3.10
670 700 1.075600 GGGGGTGAGAGGGAGAGAG 60.076 68.421 0.00 0.00 0.00 3.20
671 701 1.862138 TGGGGGTGAGAGGGAGAGA 60.862 63.158 0.00 0.00 0.00 3.10
672 702 1.687493 GTGGGGGTGAGAGGGAGAG 60.687 68.421 0.00 0.00 0.00 3.20
871 906 0.903942 CCTCTCTTGCTGCTCCTCTT 59.096 55.000 0.00 0.00 0.00 2.85
872 907 0.040942 TCCTCTCTTGCTGCTCCTCT 59.959 55.000 0.00 0.00 0.00 3.69
873 908 0.461135 CTCCTCTCTTGCTGCTCCTC 59.539 60.000 0.00 0.00 0.00 3.71
874 909 0.040942 TCTCCTCTCTTGCTGCTCCT 59.959 55.000 0.00 0.00 0.00 3.69
875 910 0.901124 TTCTCCTCTCTTGCTGCTCC 59.099 55.000 0.00 0.00 0.00 4.70
902 937 3.114616 GAGCGAGCGAGCAAGCAA 61.115 61.111 14.81 0.00 40.15 3.91
1108 1146 3.521796 GGAATGGAAGCTGGGCGC 61.522 66.667 0.00 0.00 39.57 6.53
1109 1147 2.045045 TGGAATGGAAGCTGGGCG 60.045 61.111 0.00 0.00 0.00 6.13
1110 1148 1.755783 CCTGGAATGGAAGCTGGGC 60.756 63.158 0.00 0.00 0.00 5.36
1111 1149 0.394899 GACCTGGAATGGAAGCTGGG 60.395 60.000 0.00 0.00 0.00 4.45
1112 1150 0.622665 AGACCTGGAATGGAAGCTGG 59.377 55.000 0.00 0.00 0.00 4.85
1113 1151 1.558756 AGAGACCTGGAATGGAAGCTG 59.441 52.381 0.00 0.00 0.00 4.24
1336 1402 2.095718 CGTTAGCAAGAAGAAGCAACCC 60.096 50.000 0.00 0.00 0.00 4.11
1831 1897 2.438434 AGTGCGCCATGGCTTACC 60.438 61.111 33.07 18.67 39.32 2.85
2333 2408 3.644884 AGTTGAGTACAGTCAAGACGG 57.355 47.619 0.00 0.00 37.12 4.79
2344 2419 1.728425 CGGCCGGTTAAAGTTGAGTAC 59.272 52.381 20.10 0.00 0.00 2.73
2346 2421 1.232621 GCGGCCGGTTAAAGTTGAGT 61.233 55.000 29.38 0.00 0.00 3.41
2349 2424 2.564458 GGCGGCCGGTTAAAGTTG 59.436 61.111 29.38 0.00 0.00 3.16
2422 2507 5.545658 TGAGAACAAAATGGCGACTATTC 57.454 39.130 0.00 0.00 0.00 1.75
2423 2508 6.515272 AATGAGAACAAAATGGCGACTATT 57.485 33.333 0.00 0.00 0.00 1.73
2424 2509 6.597672 TGTAATGAGAACAAAATGGCGACTAT 59.402 34.615 0.00 0.00 0.00 2.12
2425 2510 5.935206 TGTAATGAGAACAAAATGGCGACTA 59.065 36.000 0.00 0.00 0.00 2.59
2468 2553 8.957466 GTAGCCTTGTTTCCTAGTAATCAAATT 58.043 33.333 0.00 0.00 0.00 1.82
2587 2674 1.197721 AGAAGCAGCAACGAAATTCGG 59.802 47.619 19.95 3.84 45.59 4.30
2588 2675 2.601481 AGAAGCAGCAACGAAATTCG 57.399 45.000 14.35 14.35 46.93 3.34
2592 2679 3.059884 CTCAGTAGAAGCAGCAACGAAA 58.940 45.455 0.00 0.00 0.00 3.46
2595 2682 2.071688 ACTCAGTAGAAGCAGCAACG 57.928 50.000 0.00 0.00 0.00 4.10
2621 2708 4.642885 TCCAACGAAAACCAAGACTCATTT 59.357 37.500 0.00 0.00 0.00 2.32
2679 2777 2.143925 GAACCCAGACACAAGTGTAGC 58.856 52.381 5.74 0.00 45.05 3.58
2807 2949 2.849880 GTACGTACGAATGGCCACTA 57.150 50.000 24.41 0.00 0.00 2.74
2882 3024 1.533338 GCGGCGTATATCGTATCCCAG 60.533 57.143 9.37 0.00 42.13 4.45
2886 3028 0.590732 CCGGCGGCGTATATCGTATC 60.591 60.000 30.09 0.00 42.13 2.24
2894 3036 4.211502 GTGTACCCGGCGGCGTAT 62.212 66.667 30.09 19.34 0.00 3.06
2928 3070 6.212235 TGTAACCACGTAGTTGTCGATTAAA 58.788 36.000 9.74 0.00 41.61 1.52
2970 3112 4.823989 CCATGACAAGAGGAAAAAGACACT 59.176 41.667 0.00 0.00 0.00 3.55
3026 3172 0.379669 GCATGCATGTAGCCAGTGAC 59.620 55.000 26.79 3.32 44.83 3.67
3028 3174 1.029681 ATGCATGCATGTAGCCAGTG 58.970 50.000 31.74 0.85 44.83 3.66
3029 3175 1.029681 CATGCATGCATGTAGCCAGT 58.970 50.000 40.30 14.92 46.20 4.00
3030 3176 3.865700 CATGCATGCATGTAGCCAG 57.134 52.632 40.30 21.55 46.20 4.85
3066 3212 2.498481 CCACTGGGGATACGTACAAAGA 59.502 50.000 0.00 0.00 40.01 2.52
3092 3238 0.964860 CACATCGGGGAAACATGGCA 60.965 55.000 0.00 0.00 0.00 4.92
3108 3254 2.037511 CCGTAGAAAACCACCCTACACA 59.962 50.000 0.00 0.00 34.09 3.72
3131 3283 5.104374 CGGCATTAGAAGCAATCACAAATT 58.896 37.500 0.00 0.00 0.00 1.82
3164 3318 2.887568 CTCCATCTGCGCGGTCAC 60.888 66.667 17.37 0.00 0.00 3.67
3171 3325 3.461773 ACCCGTCCTCCATCTGCG 61.462 66.667 0.00 0.00 0.00 5.18
3315 3469 1.066152 GGGGTAGTACGTTAGCTTCGG 59.934 57.143 13.80 0.00 0.00 4.30
3318 3472 1.839424 ACGGGGTAGTACGTTAGCTT 58.161 50.000 0.00 0.00 40.99 3.74
3319 3473 2.092914 ACTACGGGGTAGTACGTTAGCT 60.093 50.000 6.65 0.00 45.99 3.32
3321 3475 3.938963 TGAACTACGGGGTAGTACGTTAG 59.061 47.826 8.70 0.00 46.96 2.34
3322 3476 3.945346 TGAACTACGGGGTAGTACGTTA 58.055 45.455 8.70 0.00 46.96 3.18
3323 3477 2.790433 TGAACTACGGGGTAGTACGTT 58.210 47.619 8.70 0.00 46.96 3.99
3369 3528 1.154169 TCGCCTACTACGTGTTGCG 60.154 57.895 18.86 18.86 44.49 4.85
3444 3603 3.190849 CCGTGCTCTGACGCCATG 61.191 66.667 0.00 0.00 38.05 3.66
3489 3648 0.239879 CTAGCTAGCGGCAGTAGAGC 59.760 60.000 8.05 2.82 44.79 4.09
3509 3668 1.006832 GCCGTGCATGTTACTACAGG 58.993 55.000 4.96 0.00 37.77 4.00
3510 3669 1.006832 GGCCGTGCATGTTACTACAG 58.993 55.000 4.96 0.00 37.77 2.74
3511 3670 0.738063 CGGCCGTGCATGTTACTACA 60.738 55.000 19.50 0.00 38.95 2.74
3512 3671 2.003672 CGGCCGTGCATGTTACTAC 58.996 57.895 19.50 0.00 0.00 2.73
3513 3672 1.812093 GCGGCCGTGCATGTTACTA 60.812 57.895 28.70 0.00 34.15 1.82
3514 3673 3.124921 GCGGCCGTGCATGTTACT 61.125 61.111 28.70 0.00 34.15 2.24
3515 3674 3.124921 AGCGGCCGTGCATGTTAC 61.125 61.111 28.70 6.22 37.31 2.50
3678 7383 4.864916 TCAGAATCGTAGTACGTACCAC 57.135 45.455 21.80 17.44 43.14 4.16
3679 7384 6.089954 CGATATCAGAATCGTAGTACGTACCA 59.910 42.308 21.80 5.84 42.93 3.25
3680 7385 6.465144 CGATATCAGAATCGTAGTACGTACC 58.535 44.000 21.80 6.99 42.93 3.34
3838 7545 2.125552 CAACAGCGCCCGATGAGA 60.126 61.111 13.16 0.00 35.26 3.27
3858 7565 1.742768 GGCCAGCGCTAGAGTACAT 59.257 57.895 10.99 0.00 34.44 2.29
3926 7634 2.661866 CGCGTAGGGCTATGCACC 60.662 66.667 0.00 0.00 45.73 5.01
3931 7639 2.719979 CGTGTCGCGTAGGGCTAT 59.280 61.111 5.77 0.00 41.64 2.97
3995 7703 2.908940 AACAGCACAGCACAGGGC 60.909 61.111 0.00 0.00 45.30 5.19
3996 7704 2.263741 GGAACAGCACAGCACAGGG 61.264 63.158 0.00 0.00 0.00 4.45
3997 7705 1.526686 TGGAACAGCACAGCACAGG 60.527 57.895 0.00 0.00 0.00 4.00
3998 7706 4.146058 TGGAACAGCACAGCACAG 57.854 55.556 0.00 0.00 0.00 3.66
4040 7753 2.354821 GGCTATGGCGAAAGTAAACCAG 59.645 50.000 0.00 0.00 39.81 4.00
4116 7884 2.021380 CAAGCGCACGCCGATAAC 59.979 61.111 11.47 0.00 43.17 1.89
4193 7961 6.876789 GCTGTAGCTAGTCAGTCTATAGATGA 59.123 42.308 5.57 8.03 38.21 2.92


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.