Multiple sequence alignment - TraesCS4D01G340800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G340800 chr4D 100.000 3819 0 0 1 3819 497916993 497913175 0.000000e+00 7053.0
1 TraesCS4D01G340800 chr4D 86.861 137 10 4 60 189 497924204 497924069 3.070000e-31 147.0
2 TraesCS4D01G340800 chr5A 89.266 1472 78 37 2147 3578 678230279 678228848 0.000000e+00 1770.0
3 TraesCS4D01G340800 chr5A 84.203 1494 124 51 632 2063 678231761 678230318 0.000000e+00 1349.0
4 TraesCS4D01G340800 chr5A 90.071 141 12 2 18 157 678232298 678232159 8.430000e-42 182.0
5 TraesCS4D01G340800 chr5A 91.892 74 6 0 465 538 546844345 546844272 1.880000e-18 104.0
6 TraesCS4D01G340800 chr4B 84.615 1235 82 49 1950 3117 639150470 639149277 0.000000e+00 1129.0
7 TraesCS4D01G340800 chr4B 89.269 876 42 16 1030 1883 639151349 639150504 0.000000e+00 1050.0
8 TraesCS4D01G340800 chr4B 87.415 731 58 18 3107 3819 639146036 639145322 0.000000e+00 809.0
9 TraesCS4D01G340800 chr4B 82.635 334 22 22 617 927 639151842 639151522 2.930000e-66 263.0
10 TraesCS4D01G340800 chr4B 82.796 186 24 6 1 184 639234728 639234549 3.950000e-35 159.0
11 TraesCS4D01G340800 chr4B 85.106 141 14 2 461 594 187431888 187431748 1.850000e-28 137.0
12 TraesCS4D01G340800 chr4B 87.037 108 7 1 465 565 52034887 52034780 8.670000e-22 115.0
13 TraesCS4D01G340800 chr3D 88.025 476 28 13 1129 1586 49199892 49200356 1.560000e-148 536.0
14 TraesCS4D01G340800 chr1B 87.605 476 30 13 1129 1586 52441384 52441848 3.380000e-145 525.0
15 TraesCS4D01G340800 chr1B 85.591 465 33 15 1140 1586 657606109 657606557 1.250000e-124 457.0
16 TraesCS4D01G340800 chr1B 74.543 711 120 43 1033 1722 420994277 420994947 1.760000e-63 254.0
17 TraesCS4D01G340800 chr1B 81.667 240 28 9 1624 1863 657606544 657606767 6.510000e-43 185.0
18 TraesCS4D01G340800 chr1B 80.498 241 29 11 1624 1863 52441835 52442058 6.560000e-38 169.0
19 TraesCS4D01G340800 chr7A 86.008 486 27 14 1129 1586 23513033 23512561 2.060000e-132 483.0
20 TraesCS4D01G340800 chr7A 85.950 484 29 19 1129 1586 89466805 89466335 7.420000e-132 481.0
21 TraesCS4D01G340800 chr1D 84.244 476 23 15 1129 1586 58086158 58086599 2.120000e-112 416.0
22 TraesCS4D01G340800 chr1D 82.069 290 41 10 1033 1315 311257202 311257487 1.770000e-58 237.0
23 TraesCS4D01G340800 chr1D 87.156 109 7 2 464 565 140112914 140112806 2.410000e-22 117.0
24 TraesCS4D01G340800 chr1D 97.778 45 1 0 552 596 461761870 461761826 1.140000e-10 78.7
25 TraesCS4D01G340800 chr4A 85.679 405 30 12 1128 1514 456738270 456737876 5.940000e-108 401.0
26 TraesCS4D01G340800 chr4A 93.478 46 3 0 552 597 724227780 724227735 6.850000e-08 69.4
27 TraesCS4D01G340800 chr7D 84.520 323 40 6 1567 1883 558930613 558930295 1.030000e-80 311.0
28 TraesCS4D01G340800 chr7D 93.421 76 5 0 463 538 597295614 597295689 3.120000e-21 113.0
29 TraesCS4D01G340800 chr7D 88.060 67 8 0 3753 3819 285229184 285229250 3.160000e-11 80.5
30 TraesCS4D01G340800 chr7B 82.468 308 23 15 1297 1586 459353847 459353553 1.370000e-59 241.0
31 TraesCS4D01G340800 chr7B 81.013 237 29 11 1627 1863 663233247 663233027 1.410000e-39 174.0
32 TraesCS4D01G340800 chr7B 94.521 73 4 0 466 538 648055598 648055526 3.120000e-21 113.0
33 TraesCS4D01G340800 chr1A 81.973 294 40 10 1033 1315 391235646 391235937 1.770000e-58 237.0
34 TraesCS4D01G340800 chr2B 81.013 237 29 11 1627 1863 306650905 306650685 1.410000e-39 174.0
35 TraesCS4D01G340800 chr2B 80.000 240 32 11 1624 1863 343989013 343989236 3.050000e-36 163.0
36 TraesCS4D01G340800 chr2B 86.207 116 8 3 457 565 606053953 606054067 6.700000e-23 119.0
37 TraesCS4D01G340800 chr2B 97.778 45 1 0 552 596 83727458 83727502 1.140000e-10 78.7
38 TraesCS4D01G340800 chr6B 88.976 127 14 0 1587 1713 689932386 689932260 1.420000e-34 158.0
39 TraesCS4D01G340800 chr5D 88.182 110 6 1 463 565 370355883 370355774 1.440000e-24 124.0
40 TraesCS4D01G340800 chr5D 95.918 49 1 1 552 599 21251969 21252017 1.140000e-10 78.7
41 TraesCS4D01G340800 chr5D 95.745 47 2 0 552 598 326413223 326413269 4.090000e-10 76.8
42 TraesCS4D01G340800 chr2D 92.405 79 6 0 460 538 555106176 555106254 3.120000e-21 113.0
43 TraesCS4D01G340800 chr6D 89.041 73 8 0 466 538 460845847 460845919 1.460000e-14 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G340800 chr4D 497913175 497916993 3818 True 7053.000000 7053 100.000000 1 3819 1 chr4D.!!$R1 3818
1 TraesCS4D01G340800 chr5A 678228848 678232298 3450 True 1100.333333 1770 87.846667 18 3578 3 chr5A.!!$R2 3560
2 TraesCS4D01G340800 chr4B 639145322 639151842 6520 True 812.750000 1129 85.983500 617 3819 4 chr4B.!!$R4 3202
3 TraesCS4D01G340800 chr1B 52441384 52442058 674 False 347.000000 525 84.051500 1129 1863 2 chr1B.!!$F2 734
4 TraesCS4D01G340800 chr1B 657606109 657606767 658 False 321.000000 457 83.629000 1140 1863 2 chr1B.!!$F3 723
5 TraesCS4D01G340800 chr1B 420994277 420994947 670 False 254.000000 254 74.543000 1033 1722 1 chr1B.!!$F1 689

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
175 177 0.034616 ATGCTTCTAGATGGAGCCGC 59.965 55.0 11.49 0.0 0.0 6.53 F
178 180 0.039617 CTTCTAGATGGAGCCGCTCG 60.040 60.0 14.21 0.0 0.0 5.03 F
1190 1464 0.174617 CTCTCCAACTTCCTCCGAGC 59.825 60.0 0.00 0.0 0.0 5.03 F
2183 2682 0.609406 TCTACTCGTGTCTGCTGCCT 60.609 55.0 0.00 0.0 0.0 4.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2034 2512 2.044555 GCCGGCTGGGGAAAGTAAC 61.045 63.158 22.15 0.00 35.78 2.50 R
2035 2513 2.353573 GCCGGCTGGGGAAAGTAA 59.646 61.111 22.15 0.00 35.78 2.24 R
2504 3037 0.028902 GGTTGCGGTTGTGAAGTCAC 59.971 55.000 4.43 4.43 46.59 3.67 R
3480 7316 0.459585 TCGTGATACGCTGGCCTTTC 60.460 55.000 3.32 0.00 42.21 2.62 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.662211 AAAACGCGATAGTACACTGTTTT 57.338 34.783 15.93 0.93 34.34 2.43
23 24 5.662211 AAACGCGATAGTACACTGTTTTT 57.338 34.783 15.93 0.00 39.35 1.94
24 25 4.898328 ACGCGATAGTACACTGTTTTTC 57.102 40.909 15.93 0.00 39.35 2.29
44 45 9.019764 GTTTTTCATCATGTTTTTCTCTTTCGA 57.980 29.630 0.00 0.00 0.00 3.71
48 49 9.579768 TTCATCATGTTTTTCTCTTTCGAAAAA 57.420 25.926 12.41 0.00 45.46 1.94
119 121 0.179215 GTCGATTTGACGCTTGGCAG 60.179 55.000 0.00 0.00 37.96 4.85
130 132 0.671781 GCTTGGCAGACAGACACGAT 60.672 55.000 0.00 0.00 32.34 3.73
131 133 1.404181 GCTTGGCAGACAGACACGATA 60.404 52.381 0.00 0.00 32.34 2.92
157 159 6.315393 GGTGTGATTTATCCGCCGAATAATAT 59.685 38.462 0.00 0.00 0.00 1.28
158 160 7.180079 GTGTGATTTATCCGCCGAATAATATG 58.820 38.462 0.00 0.00 0.00 1.78
159 161 6.183360 TGTGATTTATCCGCCGAATAATATGC 60.183 38.462 0.00 0.00 0.00 3.14
160 162 6.037172 GTGATTTATCCGCCGAATAATATGCT 59.963 38.462 0.00 0.00 0.00 3.79
161 163 6.597672 TGATTTATCCGCCGAATAATATGCTT 59.402 34.615 0.00 0.00 0.00 3.91
162 164 6.417191 TTTATCCGCCGAATAATATGCTTC 57.583 37.500 0.00 0.00 0.00 3.86
164 166 4.794278 TCCGCCGAATAATATGCTTCTA 57.206 40.909 0.00 0.00 0.00 2.10
165 167 4.744570 TCCGCCGAATAATATGCTTCTAG 58.255 43.478 0.00 0.00 0.00 2.43
166 168 4.461431 TCCGCCGAATAATATGCTTCTAGA 59.539 41.667 0.00 0.00 0.00 2.43
168 170 5.233050 CCGCCGAATAATATGCTTCTAGATG 59.767 44.000 0.00 0.00 0.00 2.90
169 171 5.233050 CGCCGAATAATATGCTTCTAGATGG 59.767 44.000 7.66 0.00 0.00 3.51
171 173 6.478344 GCCGAATAATATGCTTCTAGATGGAG 59.522 42.308 7.66 0.00 0.00 3.86
172 174 6.478344 CCGAATAATATGCTTCTAGATGGAGC 59.522 42.308 7.80 7.80 0.00 4.70
173 175 6.478344 CGAATAATATGCTTCTAGATGGAGCC 59.522 42.308 11.49 0.00 0.00 4.70
174 176 3.883830 ATATGCTTCTAGATGGAGCCG 57.116 47.619 11.49 0.00 0.00 5.52
175 177 0.034616 ATGCTTCTAGATGGAGCCGC 59.965 55.000 11.49 0.00 0.00 6.53
176 178 1.045350 TGCTTCTAGATGGAGCCGCT 61.045 55.000 11.49 0.00 0.00 5.52
177 179 0.319469 GCTTCTAGATGGAGCCGCTC 60.319 60.000 12.27 12.27 0.00 5.03
178 180 0.039617 CTTCTAGATGGAGCCGCTCG 60.040 60.000 14.21 0.00 0.00 5.03
180 182 3.565910 CTAGATGGAGCCGCTCGCC 62.566 68.421 14.21 2.67 38.78 5.54
205 368 0.515564 CTGGCAAAGTTAACGACGGG 59.484 55.000 0.00 0.00 0.00 5.28
206 369 1.208358 GGCAAAGTTAACGACGGGC 59.792 57.895 0.00 1.51 0.00 6.13
231 394 1.587613 GCGGCGTTGCAGTCAAAAA 60.588 52.632 9.37 0.00 33.37 1.94
232 395 0.939106 GCGGCGTTGCAGTCAAAAAT 60.939 50.000 9.37 0.00 33.37 1.82
233 396 1.052287 CGGCGTTGCAGTCAAAAATC 58.948 50.000 0.00 0.00 33.37 2.17
234 397 1.418373 GGCGTTGCAGTCAAAAATCC 58.582 50.000 0.00 0.00 33.37 3.01
235 398 1.418373 GCGTTGCAGTCAAAAATCCC 58.582 50.000 0.00 0.00 33.37 3.85
238 401 1.035923 TTGCAGTCAAAAATCCCGCA 58.964 45.000 0.00 0.00 0.00 5.69
240 403 1.269517 TGCAGTCAAAAATCCCGCAAC 60.270 47.619 0.00 0.00 0.00 4.17
241 404 1.685302 CAGTCAAAAATCCCGCAACG 58.315 50.000 0.00 0.00 0.00 4.10
242 405 1.001815 CAGTCAAAAATCCCGCAACGT 60.002 47.619 0.00 0.00 0.00 3.99
243 406 2.224549 CAGTCAAAAATCCCGCAACGTA 59.775 45.455 0.00 0.00 0.00 3.57
244 407 2.224784 AGTCAAAAATCCCGCAACGTAC 59.775 45.455 0.00 0.00 0.00 3.67
245 408 1.194997 TCAAAAATCCCGCAACGTACG 59.805 47.619 15.01 15.01 0.00 3.67
252 415 2.256158 CGCAACGTACGGGAGTGA 59.744 61.111 21.06 0.00 46.80 3.41
253 416 1.372004 CGCAACGTACGGGAGTGAA 60.372 57.895 21.06 0.00 46.80 3.18
254 417 1.611592 CGCAACGTACGGGAGTGAAC 61.612 60.000 21.06 0.00 46.80 3.18
255 418 0.598158 GCAACGTACGGGAGTGAACA 60.598 55.000 21.06 0.00 46.80 3.18
256 419 1.938016 GCAACGTACGGGAGTGAACAT 60.938 52.381 21.06 0.00 46.80 2.71
257 420 1.724623 CAACGTACGGGAGTGAACATG 59.275 52.381 21.06 0.00 46.80 3.21
258 421 1.250328 ACGTACGGGAGTGAACATGA 58.750 50.000 21.06 0.00 46.80 3.07
259 422 1.201647 ACGTACGGGAGTGAACATGAG 59.798 52.381 21.06 0.00 46.80 2.90
260 423 1.641577 GTACGGGAGTGAACATGAGC 58.358 55.000 0.00 0.00 46.80 4.26
261 424 1.067142 GTACGGGAGTGAACATGAGCA 60.067 52.381 0.00 0.00 46.80 4.26
262 425 0.320771 ACGGGAGTGAACATGAGCAC 60.321 55.000 0.00 7.16 44.82 4.40
263 426 0.320683 CGGGAGTGAACATGAGCACA 60.321 55.000 19.43 0.00 37.48 4.57
264 427 1.877680 CGGGAGTGAACATGAGCACAA 60.878 52.381 19.43 0.00 37.48 3.33
265 428 1.537202 GGGAGTGAACATGAGCACAAC 59.463 52.381 19.43 14.01 37.48 3.32
266 429 2.498167 GGAGTGAACATGAGCACAACT 58.502 47.619 19.43 6.68 37.48 3.16
267 430 2.880890 GGAGTGAACATGAGCACAACTT 59.119 45.455 19.43 4.45 37.48 2.66
268 431 3.058639 GGAGTGAACATGAGCACAACTTC 60.059 47.826 19.43 11.02 37.48 3.01
269 432 2.880890 AGTGAACATGAGCACAACTTCC 59.119 45.455 19.43 0.00 37.48 3.46
270 433 2.880890 GTGAACATGAGCACAACTTCCT 59.119 45.455 14.70 0.00 35.19 3.36
271 434 3.058639 GTGAACATGAGCACAACTTCCTC 60.059 47.826 14.70 0.00 35.19 3.71
272 435 2.191128 ACATGAGCACAACTTCCTCC 57.809 50.000 0.00 0.00 0.00 4.30
273 436 1.081892 CATGAGCACAACTTCCTCCG 58.918 55.000 0.00 0.00 0.00 4.63
274 437 0.976641 ATGAGCACAACTTCCTCCGA 59.023 50.000 0.00 0.00 0.00 4.55
275 438 0.756294 TGAGCACAACTTCCTCCGAA 59.244 50.000 0.00 0.00 0.00 4.30
276 439 1.140052 TGAGCACAACTTCCTCCGAAA 59.860 47.619 0.00 0.00 0.00 3.46
277 440 1.531578 GAGCACAACTTCCTCCGAAAC 59.468 52.381 0.00 0.00 0.00 2.78
278 441 1.141053 AGCACAACTTCCTCCGAAACT 59.859 47.619 0.00 0.00 0.00 2.66
279 442 2.367567 AGCACAACTTCCTCCGAAACTA 59.632 45.455 0.00 0.00 0.00 2.24
280 443 2.737252 GCACAACTTCCTCCGAAACTAG 59.263 50.000 0.00 0.00 0.00 2.57
281 444 3.802675 GCACAACTTCCTCCGAAACTAGT 60.803 47.826 0.00 0.00 0.00 2.57
282 445 4.560108 GCACAACTTCCTCCGAAACTAGTA 60.560 45.833 0.00 0.00 0.00 1.82
283 446 5.162075 CACAACTTCCTCCGAAACTAGTAG 58.838 45.833 0.00 0.00 0.00 2.57
284 447 5.048224 CACAACTTCCTCCGAAACTAGTAGA 60.048 44.000 3.59 0.00 0.00 2.59
285 448 5.048154 ACAACTTCCTCCGAAACTAGTAGAC 60.048 44.000 3.59 0.00 0.00 2.59
286 449 3.688673 ACTTCCTCCGAAACTAGTAGACG 59.311 47.826 3.59 2.56 0.00 4.18
287 450 2.636830 TCCTCCGAAACTAGTAGACGG 58.363 52.381 21.33 21.33 44.09 4.79
288 451 2.026822 TCCTCCGAAACTAGTAGACGGT 60.027 50.000 24.15 0.00 43.36 4.83
289 452 3.197766 TCCTCCGAAACTAGTAGACGGTA 59.802 47.826 24.15 15.19 43.36 4.02
290 453 3.559242 CCTCCGAAACTAGTAGACGGTAG 59.441 52.174 24.15 20.24 43.36 3.18
291 454 2.939103 TCCGAAACTAGTAGACGGTAGC 59.061 50.000 24.15 0.00 43.36 3.58
292 455 2.679837 CCGAAACTAGTAGACGGTAGCA 59.320 50.000 19.96 0.00 38.97 3.49
293 456 3.242673 CCGAAACTAGTAGACGGTAGCAG 60.243 52.174 19.96 2.28 38.97 4.24
294 457 3.693654 GAAACTAGTAGACGGTAGCAGC 58.306 50.000 3.59 0.00 0.00 5.25
295 458 2.414994 ACTAGTAGACGGTAGCAGCA 57.585 50.000 3.59 0.00 0.00 4.41
296 459 2.719739 ACTAGTAGACGGTAGCAGCAA 58.280 47.619 3.59 0.00 0.00 3.91
297 460 2.683867 ACTAGTAGACGGTAGCAGCAAG 59.316 50.000 3.59 0.00 0.00 4.01
298 461 1.835494 AGTAGACGGTAGCAGCAAGA 58.165 50.000 0.00 0.00 0.00 3.02
299 462 1.746220 AGTAGACGGTAGCAGCAAGAG 59.254 52.381 0.00 0.00 0.00 2.85
302 465 0.811915 GACGGTAGCAGCAAGAGAGA 59.188 55.000 0.00 0.00 0.00 3.10
305 468 3.024547 ACGGTAGCAGCAAGAGAGATAA 58.975 45.455 0.00 0.00 0.00 1.75
311 474 4.865776 AGCAGCAAGAGAGATAATCGTAC 58.134 43.478 0.00 0.00 0.00 3.67
321 484 6.981559 AGAGAGATAATCGTACTTTGAAAGGC 59.018 38.462 10.02 1.11 0.00 4.35
323 486 4.809426 AGATAATCGTACTTTGAAAGGCGG 59.191 41.667 18.59 5.12 33.79 6.13
324 487 2.467566 ATCGTACTTTGAAAGGCGGT 57.532 45.000 18.59 12.25 33.79 5.68
325 488 3.598019 ATCGTACTTTGAAAGGCGGTA 57.402 42.857 18.59 6.30 33.79 4.02
327 490 1.728425 CGTACTTTGAAAGGCGGTACC 59.272 52.381 10.02 0.16 39.61 3.34
328 491 2.079158 GTACTTTGAAAGGCGGTACCC 58.921 52.381 10.02 0.00 40.58 3.69
329 492 0.475044 ACTTTGAAAGGCGGTACCCA 59.525 50.000 10.02 0.00 40.58 4.51
330 493 0.879090 CTTTGAAAGGCGGTACCCAC 59.121 55.000 6.25 0.00 40.58 4.61
331 494 0.475044 TTTGAAAGGCGGTACCCACT 59.525 50.000 6.25 1.25 40.58 4.00
333 496 0.609662 TGAAAGGCGGTACCCACTAC 59.390 55.000 6.25 3.94 40.58 2.73
335 498 1.002315 GAAAGGCGGTACCCACTACAA 59.998 52.381 6.25 0.00 40.58 2.41
336 499 1.058284 AAGGCGGTACCCACTACAAA 58.942 50.000 6.25 0.00 40.58 2.83
337 500 0.322648 AGGCGGTACCCACTACAAAC 59.677 55.000 6.25 0.00 40.58 2.93
339 502 0.322648 GCGGTACCCACTACAAACCT 59.677 55.000 6.25 0.00 0.00 3.50
340 503 1.673923 GCGGTACCCACTACAAACCTC 60.674 57.143 6.25 0.00 0.00 3.85
341 504 1.619827 CGGTACCCACTACAAACCTCA 59.380 52.381 6.25 0.00 0.00 3.86
342 505 2.353406 CGGTACCCACTACAAACCTCAG 60.353 54.545 6.25 0.00 0.00 3.35
343 506 2.614734 GGTACCCACTACAAACCTCAGC 60.615 54.545 0.00 0.00 0.00 4.26
344 507 0.400594 ACCCACTACAAACCTCAGCC 59.599 55.000 0.00 0.00 0.00 4.85
345 508 0.673644 CCCACTACAAACCTCAGCCG 60.674 60.000 0.00 0.00 0.00 5.52
346 509 0.320374 CCACTACAAACCTCAGCCGA 59.680 55.000 0.00 0.00 0.00 5.54
347 510 1.673033 CCACTACAAACCTCAGCCGAG 60.673 57.143 0.00 0.00 39.16 4.63
348 511 1.272490 CACTACAAACCTCAGCCGAGA 59.728 52.381 0.00 0.00 42.34 4.04
349 512 1.968493 ACTACAAACCTCAGCCGAGAA 59.032 47.619 0.00 0.00 42.34 2.87
350 513 2.367567 ACTACAAACCTCAGCCGAGAAA 59.632 45.455 0.00 0.00 42.34 2.52
351 514 2.341846 ACAAACCTCAGCCGAGAAAA 57.658 45.000 0.00 0.00 42.34 2.29
356 519 4.553330 AACCTCAGCCGAGAAAAATAGA 57.447 40.909 0.00 0.00 42.34 1.98
372 535 3.748645 ATAGACCTCGAGCCCATATCT 57.251 47.619 6.99 5.03 0.00 1.98
418 584 8.994429 TTGAAAGAGAAATATCTGAGACAGAC 57.006 34.615 3.54 0.00 43.63 3.51
422 588 8.945481 AAGAGAAATATCTGAGACAGACAATG 57.055 34.615 3.54 0.00 43.63 2.82
423 589 8.303780 AGAGAAATATCTGAGACAGACAATGA 57.696 34.615 3.54 0.00 43.63 2.57
424 590 8.415553 AGAGAAATATCTGAGACAGACAATGAG 58.584 37.037 3.54 0.00 43.63 2.90
425 591 7.499292 AGAAATATCTGAGACAGACAATGAGG 58.501 38.462 3.54 0.00 43.63 3.86
426 592 6.805016 AATATCTGAGACAGACAATGAGGT 57.195 37.500 3.54 0.00 43.63 3.85
444 610 0.593128 GTTTCATCACGCAACCTGCT 59.407 50.000 0.00 0.00 42.25 4.24
454 620 3.382832 AACCTGCTCTCGTCCCCG 61.383 66.667 0.00 0.00 0.00 5.73
455 621 4.680537 ACCTGCTCTCGTCCCCGT 62.681 66.667 0.00 0.00 35.01 5.28
456 622 2.439701 CCTGCTCTCGTCCCCGTA 60.440 66.667 0.00 0.00 35.01 4.02
460 626 1.679680 CTGCTCTCGTCCCCGTAAATA 59.320 52.381 0.00 0.00 35.01 1.40
462 628 2.696707 TGCTCTCGTCCCCGTAAATAAT 59.303 45.455 0.00 0.00 35.01 1.28
463 629 3.133362 TGCTCTCGTCCCCGTAAATAATT 59.867 43.478 0.00 0.00 35.01 1.40
464 630 4.341806 TGCTCTCGTCCCCGTAAATAATTA 59.658 41.667 0.00 0.00 35.01 1.40
465 631 4.922103 GCTCTCGTCCCCGTAAATAATTAG 59.078 45.833 0.00 0.00 35.01 1.73
466 632 5.458041 TCTCGTCCCCGTAAATAATTAGG 57.542 43.478 0.00 0.00 35.01 2.69
467 633 4.281688 TCTCGTCCCCGTAAATAATTAGGG 59.718 45.833 2.78 2.78 43.56 3.53
476 642 6.977213 CCGTAAATAATTAGGGGATGTTTGG 58.023 40.000 1.91 0.00 41.36 3.28
477 643 6.443792 CGTAAATAATTAGGGGATGTTTGGC 58.556 40.000 0.00 0.00 0.00 4.52
478 644 6.264518 CGTAAATAATTAGGGGATGTTTGGCT 59.735 38.462 0.00 0.00 0.00 4.75
479 645 6.731292 AAATAATTAGGGGATGTTTGGCTC 57.269 37.500 0.00 0.00 0.00 4.70
480 646 3.756082 AATTAGGGGATGTTTGGCTCA 57.244 42.857 0.00 0.00 0.00 4.26
481 647 2.806945 TTAGGGGATGTTTGGCTCAG 57.193 50.000 0.00 0.00 0.00 3.35
482 648 0.918983 TAGGGGATGTTTGGCTCAGG 59.081 55.000 0.00 0.00 0.00 3.86
483 649 1.380380 GGGGATGTTTGGCTCAGGG 60.380 63.158 0.00 0.00 0.00 4.45
484 650 1.691219 GGGATGTTTGGCTCAGGGA 59.309 57.895 0.00 0.00 0.00 4.20
485 651 0.681243 GGGATGTTTGGCTCAGGGAC 60.681 60.000 0.00 0.00 0.00 4.46
486 652 0.329596 GGATGTTTGGCTCAGGGACT 59.670 55.000 0.00 0.00 43.88 3.85
487 653 1.272147 GGATGTTTGGCTCAGGGACTT 60.272 52.381 0.00 0.00 34.60 3.01
488 654 2.519013 GATGTTTGGCTCAGGGACTTT 58.481 47.619 0.00 0.00 34.60 2.66
489 655 2.452600 TGTTTGGCTCAGGGACTTTT 57.547 45.000 0.00 0.00 34.60 2.27
490 656 2.745968 TGTTTGGCTCAGGGACTTTTT 58.254 42.857 0.00 0.00 34.60 1.94
491 657 3.904717 TGTTTGGCTCAGGGACTTTTTA 58.095 40.909 0.00 0.00 34.60 1.52
492 658 4.282496 TGTTTGGCTCAGGGACTTTTTAA 58.718 39.130 0.00 0.00 34.60 1.52
493 659 4.898861 TGTTTGGCTCAGGGACTTTTTAAT 59.101 37.500 0.00 0.00 34.60 1.40
494 660 5.010617 TGTTTGGCTCAGGGACTTTTTAATC 59.989 40.000 0.00 0.00 34.60 1.75
495 661 3.697166 TGGCTCAGGGACTTTTTAATCC 58.303 45.455 0.00 0.00 34.60 3.01
506 672 7.184067 GGACTTTTTAATCCCAGAGACTAGA 57.816 40.000 0.00 0.00 0.00 2.43
507 673 7.621796 GGACTTTTTAATCCCAGAGACTAGAA 58.378 38.462 0.00 0.00 0.00 2.10
508 674 8.101419 GGACTTTTTAATCCCAGAGACTAGAAA 58.899 37.037 0.00 0.00 0.00 2.52
509 675 9.503399 GACTTTTTAATCCCAGAGACTAGAAAA 57.497 33.333 0.00 0.00 0.00 2.29
510 676 9.862149 ACTTTTTAATCCCAGAGACTAGAAAAA 57.138 29.630 0.00 0.00 0.00 1.94
512 678 9.862149 TTTTTAATCCCAGAGACTAGAAAAAGT 57.138 29.630 0.00 0.00 0.00 2.66
513 679 9.862149 TTTTAATCCCAGAGACTAGAAAAAGTT 57.138 29.630 0.00 0.00 0.00 2.66
514 680 9.503399 TTTAATCCCAGAGACTAGAAAAAGTTC 57.497 33.333 0.00 0.00 0.00 3.01
515 681 5.485209 TCCCAGAGACTAGAAAAAGTTCC 57.515 43.478 0.00 0.00 33.92 3.62
516 682 5.155905 TCCCAGAGACTAGAAAAAGTTCCT 58.844 41.667 0.00 0.00 33.92 3.36
517 683 6.320518 TCCCAGAGACTAGAAAAAGTTCCTA 58.679 40.000 0.00 0.00 33.92 2.94
518 684 6.785963 TCCCAGAGACTAGAAAAAGTTCCTAA 59.214 38.462 0.00 0.00 33.92 2.69
519 685 7.291651 TCCCAGAGACTAGAAAAAGTTCCTAAA 59.708 37.037 0.00 0.00 33.92 1.85
520 686 7.937394 CCCAGAGACTAGAAAAAGTTCCTAAAA 59.063 37.037 0.00 0.00 33.92 1.52
521 687 9.338622 CCAGAGACTAGAAAAAGTTCCTAAAAA 57.661 33.333 0.00 0.00 33.92 1.94
525 691 9.339850 AGACTAGAAAAAGTTCCTAAAAAGTCC 57.660 33.333 0.00 0.00 33.92 3.85
526 692 8.461249 ACTAGAAAAAGTTCCTAAAAAGTCCC 57.539 34.615 0.00 0.00 33.92 4.46
527 693 8.280084 ACTAGAAAAAGTTCCTAAAAAGTCCCT 58.720 33.333 0.00 0.00 33.92 4.20
528 694 9.788889 CTAGAAAAAGTTCCTAAAAAGTCCCTA 57.211 33.333 0.00 0.00 33.92 3.53
529 695 8.693120 AGAAAAAGTTCCTAAAAAGTCCCTAG 57.307 34.615 0.00 0.00 33.92 3.02
530 696 8.500238 AGAAAAAGTTCCTAAAAAGTCCCTAGA 58.500 33.333 0.00 0.00 33.92 2.43
531 697 9.128404 GAAAAAGTTCCTAAAAAGTCCCTAGAA 57.872 33.333 0.00 0.00 0.00 2.10
532 698 9.483489 AAAAAGTTCCTAAAAAGTCCCTAGAAA 57.517 29.630 0.00 0.00 0.00 2.52
533 699 8.461249 AAAGTTCCTAAAAAGTCCCTAGAAAC 57.539 34.615 0.00 0.00 0.00 2.78
534 700 6.540995 AGTTCCTAAAAAGTCCCTAGAAACC 58.459 40.000 0.00 0.00 0.00 3.27
535 701 6.102174 AGTTCCTAAAAAGTCCCTAGAAACCA 59.898 38.462 0.00 0.00 0.00 3.67
536 702 6.518516 TCCTAAAAAGTCCCTAGAAACCAA 57.481 37.500 0.00 0.00 0.00 3.67
537 703 6.913545 TCCTAAAAAGTCCCTAGAAACCAAA 58.086 36.000 0.00 0.00 0.00 3.28
538 704 7.532199 TCCTAAAAAGTCCCTAGAAACCAAAT 58.468 34.615 0.00 0.00 0.00 2.32
539 705 8.671409 TCCTAAAAAGTCCCTAGAAACCAAATA 58.329 33.333 0.00 0.00 0.00 1.40
540 706 9.475620 CCTAAAAAGTCCCTAGAAACCAAATAT 57.524 33.333 0.00 0.00 0.00 1.28
565 731 5.813513 TTTCTACGGGGACTAGAAAAAGT 57.186 39.130 0.00 0.00 37.24 2.66
566 732 5.397142 TTCTACGGGGACTAGAAAAAGTC 57.603 43.478 0.00 0.00 44.31 3.01
567 733 2.738013 ACGGGGACTAGAAAAAGTCG 57.262 50.000 0.00 0.00 45.69 4.18
568 734 1.966354 ACGGGGACTAGAAAAAGTCGT 59.034 47.619 0.00 0.00 45.69 4.34
569 735 3.157087 ACGGGGACTAGAAAAAGTCGTA 58.843 45.455 0.00 0.00 45.69 3.43
570 736 3.192212 ACGGGGACTAGAAAAAGTCGTAG 59.808 47.826 0.00 0.00 45.69 3.51
571 737 3.428589 CGGGGACTAGAAAAAGTCGTAGG 60.429 52.174 0.00 0.00 45.69 3.18
572 738 3.766051 GGGGACTAGAAAAAGTCGTAGGA 59.234 47.826 0.00 0.00 45.69 2.94
573 739 4.381398 GGGGACTAGAAAAAGTCGTAGGAC 60.381 50.000 7.49 7.49 45.69 3.85
584 750 3.655276 GTCGTAGGACTTCTGAACCAA 57.345 47.619 8.31 0.00 40.15 3.67
585 751 3.986277 GTCGTAGGACTTCTGAACCAAA 58.014 45.455 8.31 0.00 40.15 3.28
586 752 3.739810 GTCGTAGGACTTCTGAACCAAAC 59.260 47.826 8.31 0.00 40.15 2.93
587 753 3.385433 TCGTAGGACTTCTGAACCAAACA 59.615 43.478 0.58 0.00 0.00 2.83
588 754 3.493503 CGTAGGACTTCTGAACCAAACAC 59.506 47.826 0.58 0.00 0.00 3.32
589 755 2.932261 AGGACTTCTGAACCAAACACC 58.068 47.619 0.58 0.00 0.00 4.16
590 756 1.954382 GGACTTCTGAACCAAACACCC 59.046 52.381 0.00 0.00 0.00 4.61
591 757 2.422945 GGACTTCTGAACCAAACACCCT 60.423 50.000 0.00 0.00 0.00 4.34
592 758 2.879026 GACTTCTGAACCAAACACCCTC 59.121 50.000 0.00 0.00 0.00 4.30
593 759 2.509964 ACTTCTGAACCAAACACCCTCT 59.490 45.455 0.00 0.00 0.00 3.69
594 760 3.053619 ACTTCTGAACCAAACACCCTCTT 60.054 43.478 0.00 0.00 0.00 2.85
595 761 4.165372 ACTTCTGAACCAAACACCCTCTTA 59.835 41.667 0.00 0.00 0.00 2.10
596 762 4.781775 TCTGAACCAAACACCCTCTTAA 57.218 40.909 0.00 0.00 0.00 1.85
597 763 4.457466 TCTGAACCAAACACCCTCTTAAC 58.543 43.478 0.00 0.00 0.00 2.01
598 764 3.558033 TGAACCAAACACCCTCTTAACC 58.442 45.455 0.00 0.00 0.00 2.85
599 765 2.265589 ACCAAACACCCTCTTAACCG 57.734 50.000 0.00 0.00 0.00 4.44
600 766 1.202842 ACCAAACACCCTCTTAACCGG 60.203 52.381 0.00 0.00 0.00 5.28
601 767 1.530323 CAAACACCCTCTTAACCGGG 58.470 55.000 6.32 0.00 46.26 5.73
602 768 0.251033 AAACACCCTCTTAACCGGGC 60.251 55.000 6.32 0.00 44.63 6.13
603 769 2.125269 CACCCTCTTAACCGGGCG 60.125 66.667 6.32 0.00 44.63 6.13
604 770 3.396570 ACCCTCTTAACCGGGCGG 61.397 66.667 6.32 0.00 44.63 6.13
605 771 4.171103 CCCTCTTAACCGGGCGGG 62.171 72.222 6.32 9.88 43.62 6.13
606 772 4.171103 CCTCTTAACCGGGCGGGG 62.171 72.222 16.11 3.70 41.60 5.73
607 773 4.851179 CTCTTAACCGGGCGGGGC 62.851 72.222 16.11 0.00 41.60 5.80
648 814 4.623814 CGGAAGCTTCTCCATGCA 57.376 55.556 25.05 0.00 34.91 3.96
751 923 1.757340 GTAGGAGTAGGCCCTGCGT 60.757 63.158 0.00 0.00 35.30 5.24
770 942 1.474332 TTACGCGGTCAAACCCTCCT 61.474 55.000 12.47 0.00 33.75 3.69
787 959 1.417517 TCCTCCAACCATCATCCATCG 59.582 52.381 0.00 0.00 0.00 3.84
790 962 0.466007 CCAACCATCATCCATCGCCA 60.466 55.000 0.00 0.00 0.00 5.69
791 963 1.612676 CAACCATCATCCATCGCCAT 58.387 50.000 0.00 0.00 0.00 4.40
797 969 2.526624 ATCCATCGCCATCCCCGA 60.527 61.111 0.00 0.00 39.24 5.14
833 1021 1.143073 ACAAGAAAAACTCCTCCGCCT 59.857 47.619 0.00 0.00 0.00 5.52
835 1023 0.325272 AGAAAAACTCCTCCGCCTCC 59.675 55.000 0.00 0.00 0.00 4.30
836 1024 0.325272 GAAAAACTCCTCCGCCTCCT 59.675 55.000 0.00 0.00 0.00 3.69
1188 1462 0.408309 TCCTCTCCAACTTCCTCCGA 59.592 55.000 0.00 0.00 0.00 4.55
1189 1463 0.820871 CCTCTCCAACTTCCTCCGAG 59.179 60.000 0.00 0.00 0.00 4.63
1190 1464 0.174617 CTCTCCAACTTCCTCCGAGC 59.825 60.000 0.00 0.00 0.00 5.03
1191 1465 1.219393 CTCCAACTTCCTCCGAGCC 59.781 63.158 0.00 0.00 0.00 4.70
1192 1466 2.125512 CCAACTTCCTCCGAGCCG 60.126 66.667 0.00 0.00 0.00 5.52
1193 1467 2.646175 CCAACTTCCTCCGAGCCGA 61.646 63.158 0.00 0.00 0.00 5.54
1194 1468 1.446272 CAACTTCCTCCGAGCCGAC 60.446 63.158 0.00 0.00 0.00 4.79
1195 1469 2.991076 AACTTCCTCCGAGCCGACG 61.991 63.158 0.00 0.00 0.00 5.12
1196 1470 4.856607 CTTCCTCCGAGCCGACGC 62.857 72.222 0.00 0.00 0.00 5.19
1765 2163 0.937304 CTCCATCGCATTAACCACCG 59.063 55.000 0.00 0.00 0.00 4.94
1767 2165 1.481363 TCCATCGCATTAACCACCGTA 59.519 47.619 0.00 0.00 0.00 4.02
1834 2232 3.997021 ACAAACACAAAACCAATTTCGCA 59.003 34.783 0.00 0.00 0.00 5.10
1838 2236 7.011857 ACAAACACAAAACCAATTTCGCATTAT 59.988 29.630 0.00 0.00 0.00 1.28
1839 2237 8.491152 CAAACACAAAACCAATTTCGCATTATA 58.509 29.630 0.00 0.00 0.00 0.98
1840 2238 8.770438 AACACAAAACCAATTTCGCATTATAT 57.230 26.923 0.00 0.00 0.00 0.86
1851 2249 9.289303 CAATTTCGCATTATATTATTAGTGGCC 57.711 33.333 0.00 0.00 0.00 5.36
1876 2274 7.809806 CCAAAATTCAGATAAACTCGAGCTTTT 59.190 33.333 13.61 9.28 0.00 2.27
1907 2359 1.974875 CTGCTGCACAATCCAGGCA 60.975 57.895 0.00 0.00 35.96 4.75
1924 2376 4.331968 CAGGCACTTCTTTGGGTGTATAA 58.668 43.478 0.00 0.00 34.60 0.98
1926 2378 5.418840 CAGGCACTTCTTTGGGTGTATAATT 59.581 40.000 0.00 0.00 34.60 1.40
2101 2599 3.987594 GGAGGACCCAGCAATTTCT 57.012 52.632 0.00 0.00 34.14 2.52
2102 2600 1.467920 GGAGGACCCAGCAATTTCTG 58.532 55.000 0.00 0.00 34.14 3.02
2103 2601 1.004745 GGAGGACCCAGCAATTTCTGA 59.995 52.381 6.67 0.00 36.19 3.27
2170 2669 9.660180 AACCTGAAATTCTGAATTAGTCTACTC 57.340 33.333 15.45 8.50 0.00 2.59
2183 2682 0.609406 TCTACTCGTGTCTGCTGCCT 60.609 55.000 0.00 0.00 0.00 4.75
2295 2810 3.636231 CCGGGTGCTCCAAGGACA 61.636 66.667 11.74 0.00 38.40 4.02
2302 2817 1.216710 GCTCCAAGGACAGACGGAG 59.783 63.158 0.00 0.00 46.53 4.63
2303 2818 1.251527 GCTCCAAGGACAGACGGAGA 61.252 60.000 8.46 0.00 46.71 3.71
2306 2821 0.814457 CCAAGGACAGACGGAGAGAG 59.186 60.000 0.00 0.00 0.00 3.20
2307 2822 1.614583 CCAAGGACAGACGGAGAGAGA 60.615 57.143 0.00 0.00 0.00 3.10
2308 2823 1.742831 CAAGGACAGACGGAGAGAGAG 59.257 57.143 0.00 0.00 0.00 3.20
2309 2824 1.281419 AGGACAGACGGAGAGAGAGA 58.719 55.000 0.00 0.00 0.00 3.10
2316 2831 3.070159 CAGACGGAGAGAGAGAGAGAGAT 59.930 52.174 0.00 0.00 0.00 2.75
2384 2899 2.741092 GGAGACACGGTCCAGCAA 59.259 61.111 1.06 0.00 33.84 3.91
2388 2903 2.591715 ACACGGTCCAGCAACAGC 60.592 61.111 0.00 0.00 0.00 4.40
2389 2904 2.281070 CACGGTCCAGCAACAGCT 60.281 61.111 0.00 0.00 39.75 4.24
2405 2920 1.227645 GCTGTGAGCCTGTGACACA 60.228 57.895 8.26 8.26 41.27 3.72
2410 2925 2.158769 TGTGAGCCTGTGACACATTTCT 60.159 45.455 9.11 6.43 39.17 2.52
2462 2978 2.029844 GACTGTGCAGGCCGACTTC 61.030 63.158 0.00 0.00 0.00 3.01
2509 3042 3.356529 CCATCTGGGCTAAAAGTGACT 57.643 47.619 0.00 0.00 0.00 3.41
2568 3102 2.046023 TGTGGCCGCCTGATGAAG 60.046 61.111 15.15 0.00 0.00 3.02
2577 3111 2.079158 CGCCTGATGAAGCTTCTTTGA 58.921 47.619 26.09 7.35 0.00 2.69
2596 3130 0.953960 ATTCCGTCGGAAACACAGCC 60.954 55.000 29.33 0.00 45.41 4.85
2622 3156 0.591170 ACGGTTCTTTTGGCGTGATG 59.409 50.000 0.00 0.00 0.00 3.07
2631 3165 0.319986 TTGGCGTGATGTTCGTAGCA 60.320 50.000 0.00 0.00 0.00 3.49
2658 3196 3.936372 TCTCCTCGACTTCGTCAAATT 57.064 42.857 0.00 0.00 40.80 1.82
2684 3226 3.421741 CTGTCGTGAAAGCGAACAAAAA 58.578 40.909 0.00 0.00 42.82 1.94
2711 3262 3.802685 AGCTGTTTTGTTACTGTCTCGTC 59.197 43.478 0.00 0.00 0.00 4.20
2800 3351 3.414700 CACACGCCCAAGTCGCTC 61.415 66.667 0.00 0.00 0.00 5.03
2812 3363 1.171308 AGTCGCTCAAGCAATGCATT 58.829 45.000 5.99 5.99 42.21 3.56
2825 3376 3.772932 CAATGCATTGTATGACACCCAC 58.227 45.455 27.81 0.00 33.22 4.61
2836 3387 3.326578 CACCCACCCCATCGTCCA 61.327 66.667 0.00 0.00 0.00 4.02
2870 3421 1.443828 GGATTCTGGAGAGGCGACC 59.556 63.158 0.00 0.00 0.00 4.79
2904 3457 1.834263 CTTCCTCCTCCGGTCTCAAAT 59.166 52.381 0.00 0.00 0.00 2.32
2983 3537 3.057019 ACGCGCCATGTGTATATGTTAG 58.943 45.455 5.73 0.00 40.21 2.34
2984 3538 3.057019 CGCGCCATGTGTATATGTTAGT 58.943 45.455 0.00 0.00 0.00 2.24
2985 3539 4.231439 CGCGCCATGTGTATATGTTAGTA 58.769 43.478 0.00 0.00 0.00 1.82
3090 3648 1.221414 GCAACATAGGATGAGCCGTC 58.779 55.000 0.00 0.00 43.43 4.79
3111 3670 0.248377 GGCAGATGCGATTGCTGTTC 60.248 55.000 6.47 1.02 43.34 3.18
3116 3675 4.232221 CAGATGCGATTGCTGTTCTTTTT 58.768 39.130 6.47 0.00 43.34 1.94
3150 6966 6.520272 TCTTCTTCTTCTCCTCTCTGTTTTG 58.480 40.000 0.00 0.00 0.00 2.44
3151 6967 5.220710 TCTTCTTCTCCTCTCTGTTTTGG 57.779 43.478 0.00 0.00 0.00 3.28
3152 6968 4.656112 TCTTCTTCTCCTCTCTGTTTTGGT 59.344 41.667 0.00 0.00 0.00 3.67
3153 6969 5.131142 TCTTCTTCTCCTCTCTGTTTTGGTT 59.869 40.000 0.00 0.00 0.00 3.67
3154 6970 5.373812 TCTTCTCCTCTCTGTTTTGGTTT 57.626 39.130 0.00 0.00 0.00 3.27
3155 6971 5.368989 TCTTCTCCTCTCTGTTTTGGTTTC 58.631 41.667 0.00 0.00 0.00 2.78
3156 6972 4.771114 TCTCCTCTCTGTTTTGGTTTCA 57.229 40.909 0.00 0.00 0.00 2.69
3157 6973 5.310409 TCTCCTCTCTGTTTTGGTTTCAT 57.690 39.130 0.00 0.00 0.00 2.57
3158 6974 5.065914 TCTCCTCTCTGTTTTGGTTTCATG 58.934 41.667 0.00 0.00 0.00 3.07
3190 7006 0.603569 GGACGTCACCATGTCTGACT 59.396 55.000 18.91 6.07 38.47 3.41
3191 7007 1.670087 GGACGTCACCATGTCTGACTG 60.670 57.143 18.91 11.99 38.47 3.51
3192 7008 0.318441 ACGTCACCATGTCTGACTGG 59.682 55.000 18.59 18.59 36.63 4.00
3223 7047 4.746836 TTGTCAAACGAACGAAATTTGC 57.253 36.364 0.00 0.42 34.09 3.68
3229 7053 0.787908 CGAACGAAATTTGCCGGACG 60.788 55.000 5.05 0.77 0.00 4.79
3240 7064 2.027003 TGCCGGACGGGTAAAATTAG 57.973 50.000 5.05 0.00 38.44 1.73
3243 7067 2.554142 CCGGACGGGTAAAATTAGTCC 58.446 52.381 0.00 3.07 45.68 3.85
3325 7149 1.327460 CAAGTAATGACGCACGGGATG 59.673 52.381 0.00 0.00 0.00 3.51
3406 7238 3.958147 ACAACGGGGAAATGAAGACTTTT 59.042 39.130 0.00 0.00 0.00 2.27
3407 7239 4.404394 ACAACGGGGAAATGAAGACTTTTT 59.596 37.500 0.00 0.00 0.00 1.94
3480 7316 1.284785 TGGGATACTTTTCAGCCTGGG 59.715 52.381 0.00 0.00 0.00 4.45
3517 7353 2.171448 ACGAGAGGATGGCTGCTAAAAT 59.829 45.455 0.00 0.00 0.00 1.82
3527 7363 3.887110 TGGCTGCTAAAATGATCTGGATG 59.113 43.478 0.00 0.00 0.00 3.51
3595 7431 3.761752 GGGGCATTAGAGAGACTAGCTAG 59.238 52.174 19.44 19.44 32.30 3.42
3602 7438 1.335496 GAGAGACTAGCTAGTTGCCCG 59.665 57.143 26.71 0.00 44.23 6.13
3608 7444 0.108992 TAGCTAGTTGCCCGTCGTTG 60.109 55.000 0.00 0.00 44.23 4.10
3609 7445 3.023591 GCTAGTTGCCCGTCGTTGC 62.024 63.158 0.00 0.00 35.15 4.17
3610 7446 1.666553 CTAGTTGCCCGTCGTTGCA 60.667 57.895 2.87 2.87 35.27 4.08
3611 7447 1.225376 CTAGTTGCCCGTCGTTGCAA 61.225 55.000 13.48 13.48 44.64 4.08
3630 7466 5.837437 TGCAACGGGGCAAATATATTTTAG 58.163 37.500 8.01 0.01 41.65 1.85
3638 7474 9.840427 CGGGGCAAATATATTTTAGTAATTCAG 57.160 33.333 8.01 0.00 0.00 3.02
3700 7536 3.843619 TCTCTATGGTTTGTCCCACATCA 59.156 43.478 0.00 0.00 37.31 3.07
3701 7537 4.474651 TCTCTATGGTTTGTCCCACATCAT 59.525 41.667 0.00 0.00 37.31 2.45
3706 7542 2.095263 GGTTTGTCCCACATCATTGTCG 60.095 50.000 0.00 0.00 32.34 4.35
3717 7553 6.201044 CCCACATCATTGTCGTAAGTAAGATC 59.799 42.308 0.00 0.00 32.34 2.75
3746 7582 4.448732 GCAGAACATGAAAATGGTGGAAAC 59.551 41.667 0.00 0.00 0.00 2.78
3747 7583 5.739935 GCAGAACATGAAAATGGTGGAAACT 60.740 40.000 0.00 0.00 0.00 2.66
3771 7607 8.739972 ACTAATTCACATAAATGACACTTTCCC 58.260 33.333 0.00 0.00 0.00 3.97
3787 7623 8.349568 ACACTTTCCCTAAATTAAGGTGATTC 57.650 34.615 7.04 0.00 34.56 2.52
3789 7625 8.678199 CACTTTCCCTAAATTAAGGTGATTCTC 58.322 37.037 0.00 0.00 34.56 2.87
3798 7634 2.100605 AGGTGATTCTCGTTTGAGGC 57.899 50.000 0.00 0.00 42.79 4.70
3807 7643 3.745799 TCTCGTTTGAGGCATTTAACCA 58.254 40.909 0.00 0.00 42.79 3.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.662211 AAAACAGTGTACTATCGCGTTTT 57.338 34.783 5.77 0.00 34.03 2.43
1 2 5.234757 TGAAAAACAGTGTACTATCGCGTTT 59.765 36.000 5.77 0.00 0.00 3.60
2 3 4.746115 TGAAAAACAGTGTACTATCGCGTT 59.254 37.500 5.77 0.00 0.00 4.84
3 4 4.300803 TGAAAAACAGTGTACTATCGCGT 58.699 39.130 5.77 0.00 0.00 6.01
4 5 4.896562 TGAAAAACAGTGTACTATCGCG 57.103 40.909 0.00 0.00 0.00 5.87
5 6 6.403333 TGATGAAAAACAGTGTACTATCGC 57.597 37.500 0.00 0.00 0.00 4.58
6 7 7.963981 ACATGATGAAAAACAGTGTACTATCG 58.036 34.615 0.00 0.00 0.00 2.92
10 11 9.301153 GAAAAACATGATGAAAAACAGTGTACT 57.699 29.630 0.00 0.00 0.00 2.73
11 12 9.301153 AGAAAAACATGATGAAAAACAGTGTAC 57.699 29.630 0.00 0.00 0.00 2.90
12 13 9.515020 GAGAAAAACATGATGAAAAACAGTGTA 57.485 29.630 0.00 0.00 0.00 2.90
13 14 8.253113 AGAGAAAAACATGATGAAAAACAGTGT 58.747 29.630 0.00 0.00 0.00 3.55
14 15 8.638685 AGAGAAAAACATGATGAAAAACAGTG 57.361 30.769 0.00 0.00 0.00 3.66
15 16 9.657419 AAAGAGAAAAACATGATGAAAAACAGT 57.343 25.926 0.00 0.00 0.00 3.55
17 18 8.806634 CGAAAGAGAAAAACATGATGAAAAACA 58.193 29.630 0.00 0.00 0.00 2.83
18 19 9.019764 TCGAAAGAGAAAAACATGATGAAAAAC 57.980 29.630 0.00 0.00 34.84 2.43
19 20 9.579768 TTCGAAAGAGAAAAACATGATGAAAAA 57.420 25.926 0.00 0.00 43.69 1.94
20 21 9.579768 TTTCGAAAGAGAAAAACATGATGAAAA 57.420 25.926 6.47 0.00 43.69 2.29
21 22 9.579768 TTTTCGAAAGAGAAAAACATGATGAAA 57.420 25.926 10.98 0.00 44.25 2.69
48 49 5.815740 AGACGCGTGGAGAAACATATTTATT 59.184 36.000 20.70 0.00 0.00 1.40
52 53 2.930040 CAGACGCGTGGAGAAACATATT 59.070 45.455 20.70 0.00 0.00 1.28
53 54 2.540515 CAGACGCGTGGAGAAACATAT 58.459 47.619 20.70 0.00 0.00 1.78
55 56 0.670546 CCAGACGCGTGGAGAAACAT 60.671 55.000 20.70 0.00 40.44 2.71
57 58 1.006571 TCCAGACGCGTGGAGAAAC 60.007 57.895 20.70 0.00 41.99 2.78
58 59 3.450507 TCCAGACGCGTGGAGAAA 58.549 55.556 20.70 0.00 41.99 2.52
111 113 0.671781 ATCGTGTCTGTCTGCCAAGC 60.672 55.000 0.00 0.00 0.00 4.01
130 132 2.033372 TCGGCGGATAAATCACACCTA 58.967 47.619 7.21 0.00 0.00 3.08
131 133 0.828022 TCGGCGGATAAATCACACCT 59.172 50.000 7.21 0.00 0.00 4.00
145 147 5.233050 CCATCTAGAAGCATATTATTCGGCG 59.767 44.000 0.00 0.00 0.00 6.46
157 159 1.045350 AGCGGCTCCATCTAGAAGCA 61.045 55.000 15.12 0.00 0.00 3.91
158 160 0.319469 GAGCGGCTCCATCTAGAAGC 60.319 60.000 19.20 6.38 0.00 3.86
159 161 0.039617 CGAGCGGCTCCATCTAGAAG 60.040 60.000 23.36 3.02 0.00 2.85
160 162 2.033793 CGAGCGGCTCCATCTAGAA 58.966 57.895 23.36 0.00 0.00 2.10
161 163 2.556459 GCGAGCGGCTCCATCTAGA 61.556 63.158 23.36 0.00 39.11 2.43
162 164 2.049618 GCGAGCGGCTCCATCTAG 60.050 66.667 23.36 9.88 39.11 2.43
182 184 1.160946 TCGTTAACTTTGCCAGCGCA 61.161 50.000 11.47 0.00 45.49 6.09
183 185 0.724785 GTCGTTAACTTTGCCAGCGC 60.725 55.000 0.00 0.00 0.00 5.92
184 186 0.450482 CGTCGTTAACTTTGCCAGCG 60.450 55.000 3.71 0.00 0.00 5.18
186 188 0.515564 CCCGTCGTTAACTTTGCCAG 59.484 55.000 3.71 0.00 0.00 4.85
221 384 1.418373 GTTGCGGGATTTTTGACTGC 58.582 50.000 0.00 0.00 37.04 4.40
226 389 1.597798 CGTACGTTGCGGGATTTTTG 58.402 50.000 7.22 0.00 0.00 2.44
235 398 1.372004 TTCACTCCCGTACGTTGCG 60.372 57.895 15.21 0.00 0.00 4.85
238 401 1.614903 TCATGTTCACTCCCGTACGTT 59.385 47.619 15.21 0.00 0.00 3.99
240 403 1.909376 CTCATGTTCACTCCCGTACG 58.091 55.000 8.69 8.69 0.00 3.67
241 404 1.067142 TGCTCATGTTCACTCCCGTAC 60.067 52.381 0.00 0.00 0.00 3.67
242 405 1.067142 GTGCTCATGTTCACTCCCGTA 60.067 52.381 11.12 0.00 0.00 4.02
243 406 0.320771 GTGCTCATGTTCACTCCCGT 60.321 55.000 11.12 0.00 0.00 5.28
244 407 0.320683 TGTGCTCATGTTCACTCCCG 60.321 55.000 16.64 0.00 34.49 5.14
245 408 1.537202 GTTGTGCTCATGTTCACTCCC 59.463 52.381 16.64 5.61 34.49 4.30
246 409 2.498167 AGTTGTGCTCATGTTCACTCC 58.502 47.619 16.64 9.75 34.49 3.85
247 410 3.058639 GGAAGTTGTGCTCATGTTCACTC 60.059 47.826 16.64 11.57 34.49 3.51
248 411 2.880890 GGAAGTTGTGCTCATGTTCACT 59.119 45.455 16.64 0.14 34.49 3.41
249 412 2.880890 AGGAAGTTGTGCTCATGTTCAC 59.119 45.455 11.37 11.37 0.00 3.18
250 413 3.141398 GAGGAAGTTGTGCTCATGTTCA 58.859 45.455 10.87 0.00 43.93 3.18
251 414 2.485814 GGAGGAAGTTGTGCTCATGTTC 59.514 50.000 0.00 0.00 46.22 3.18
252 415 2.508526 GGAGGAAGTTGTGCTCATGTT 58.491 47.619 0.00 0.00 46.22 2.71
253 416 1.609061 CGGAGGAAGTTGTGCTCATGT 60.609 52.381 0.00 0.00 46.22 3.21
254 417 1.081892 CGGAGGAAGTTGTGCTCATG 58.918 55.000 0.00 0.00 46.22 3.07
255 418 0.976641 TCGGAGGAAGTTGTGCTCAT 59.023 50.000 0.00 0.00 46.22 2.90
256 419 0.756294 TTCGGAGGAAGTTGTGCTCA 59.244 50.000 0.00 0.00 46.22 4.26
257 420 1.531578 GTTTCGGAGGAAGTTGTGCTC 59.468 52.381 0.00 0.00 43.77 4.26
258 421 1.141053 AGTTTCGGAGGAAGTTGTGCT 59.859 47.619 0.00 0.00 32.80 4.40
259 422 1.594331 AGTTTCGGAGGAAGTTGTGC 58.406 50.000 0.00 0.00 32.80 4.57
260 423 3.991367 ACTAGTTTCGGAGGAAGTTGTG 58.009 45.455 0.00 0.00 32.80 3.33
261 424 5.048154 GTCTACTAGTTTCGGAGGAAGTTGT 60.048 44.000 0.00 0.00 32.80 3.32
262 425 5.400703 GTCTACTAGTTTCGGAGGAAGTTG 58.599 45.833 0.00 0.00 32.80 3.16
263 426 4.155644 CGTCTACTAGTTTCGGAGGAAGTT 59.844 45.833 0.00 0.00 32.80 2.66
264 427 3.688673 CGTCTACTAGTTTCGGAGGAAGT 59.311 47.826 0.00 0.00 32.80 3.01
265 428 3.065095 CCGTCTACTAGTTTCGGAGGAAG 59.935 52.174 20.63 2.93 43.22 3.46
266 429 3.012518 CCGTCTACTAGTTTCGGAGGAA 58.987 50.000 20.63 0.00 43.22 3.36
267 430 2.026822 ACCGTCTACTAGTTTCGGAGGA 60.027 50.000 27.32 0.00 43.22 3.71
268 431 2.363683 ACCGTCTACTAGTTTCGGAGG 58.636 52.381 27.32 15.81 43.22 4.30
269 432 3.002144 GCTACCGTCTACTAGTTTCGGAG 59.998 52.174 27.32 21.65 43.22 4.63
270 433 2.939103 GCTACCGTCTACTAGTTTCGGA 59.061 50.000 27.32 15.97 43.22 4.55
271 434 2.679837 TGCTACCGTCTACTAGTTTCGG 59.320 50.000 22.35 22.35 45.53 4.30
272 435 3.788135 GCTGCTACCGTCTACTAGTTTCG 60.788 52.174 0.00 3.94 0.00 3.46
273 436 3.128242 TGCTGCTACCGTCTACTAGTTTC 59.872 47.826 0.00 0.00 0.00 2.78
274 437 3.087031 TGCTGCTACCGTCTACTAGTTT 58.913 45.455 0.00 0.00 0.00 2.66
275 438 2.719739 TGCTGCTACCGTCTACTAGTT 58.280 47.619 0.00 0.00 0.00 2.24
276 439 2.414994 TGCTGCTACCGTCTACTAGT 57.585 50.000 0.00 0.00 0.00 2.57
277 440 2.943690 TCTTGCTGCTACCGTCTACTAG 59.056 50.000 0.00 0.00 0.00 2.57
278 441 2.943690 CTCTTGCTGCTACCGTCTACTA 59.056 50.000 0.00 0.00 0.00 1.82
279 442 1.746220 CTCTTGCTGCTACCGTCTACT 59.254 52.381 0.00 0.00 0.00 2.57
280 443 1.743958 TCTCTTGCTGCTACCGTCTAC 59.256 52.381 0.00 0.00 0.00 2.59
281 444 2.017782 CTCTCTTGCTGCTACCGTCTA 58.982 52.381 0.00 0.00 0.00 2.59
282 445 0.814457 CTCTCTTGCTGCTACCGTCT 59.186 55.000 0.00 0.00 0.00 4.18
283 446 0.811915 TCTCTCTTGCTGCTACCGTC 59.188 55.000 0.00 0.00 0.00 4.79
284 447 1.479709 ATCTCTCTTGCTGCTACCGT 58.520 50.000 0.00 0.00 0.00 4.83
285 448 3.717400 TTATCTCTCTTGCTGCTACCG 57.283 47.619 0.00 0.00 0.00 4.02
286 449 4.233789 CGATTATCTCTCTTGCTGCTACC 58.766 47.826 0.00 0.00 0.00 3.18
287 450 4.865776 ACGATTATCTCTCTTGCTGCTAC 58.134 43.478 0.00 0.00 0.00 3.58
288 451 5.765677 AGTACGATTATCTCTCTTGCTGCTA 59.234 40.000 0.00 0.00 0.00 3.49
289 452 4.582656 AGTACGATTATCTCTCTTGCTGCT 59.417 41.667 0.00 0.00 0.00 4.24
290 453 4.865776 AGTACGATTATCTCTCTTGCTGC 58.134 43.478 0.00 0.00 0.00 5.25
291 454 6.975197 TCAAAGTACGATTATCTCTCTTGCTG 59.025 38.462 0.00 0.00 0.00 4.41
292 455 7.101652 TCAAAGTACGATTATCTCTCTTGCT 57.898 36.000 0.00 0.00 0.00 3.91
293 456 7.757097 TTCAAAGTACGATTATCTCTCTTGC 57.243 36.000 0.00 0.00 0.00 4.01
294 457 8.812329 CCTTTCAAAGTACGATTATCTCTCTTG 58.188 37.037 0.00 0.00 0.00 3.02
295 458 7.492994 GCCTTTCAAAGTACGATTATCTCTCTT 59.507 37.037 0.00 0.00 0.00 2.85
296 459 6.981559 GCCTTTCAAAGTACGATTATCTCTCT 59.018 38.462 0.00 0.00 0.00 3.10
297 460 6.074782 CGCCTTTCAAAGTACGATTATCTCTC 60.075 42.308 4.23 0.00 0.00 3.20
298 461 5.749109 CGCCTTTCAAAGTACGATTATCTCT 59.251 40.000 4.23 0.00 0.00 3.10
299 462 5.050972 CCGCCTTTCAAAGTACGATTATCTC 60.051 44.000 10.53 0.00 0.00 2.75
302 465 4.510571 ACCGCCTTTCAAAGTACGATTAT 58.489 39.130 10.53 0.00 0.00 1.28
305 468 2.467566 ACCGCCTTTCAAAGTACGAT 57.532 45.000 10.53 0.00 0.00 3.73
323 486 2.614734 GGCTGAGGTTTGTAGTGGGTAC 60.615 54.545 0.00 0.00 0.00 3.34
324 487 1.626825 GGCTGAGGTTTGTAGTGGGTA 59.373 52.381 0.00 0.00 0.00 3.69
325 488 0.400594 GGCTGAGGTTTGTAGTGGGT 59.599 55.000 0.00 0.00 0.00 4.51
327 490 0.320374 TCGGCTGAGGTTTGTAGTGG 59.680 55.000 0.00 0.00 0.00 4.00
328 491 1.272490 TCTCGGCTGAGGTTTGTAGTG 59.728 52.381 22.38 0.00 42.79 2.74
329 492 1.629043 TCTCGGCTGAGGTTTGTAGT 58.371 50.000 22.38 0.00 42.79 2.73
330 493 2.743636 TTCTCGGCTGAGGTTTGTAG 57.256 50.000 22.38 0.00 42.79 2.74
331 494 3.478857 TTTTCTCGGCTGAGGTTTGTA 57.521 42.857 22.38 0.00 42.79 2.41
333 496 3.923017 ATTTTTCTCGGCTGAGGTTTG 57.077 42.857 22.38 0.00 42.79 2.93
335 498 4.254492 GTCTATTTTTCTCGGCTGAGGTT 58.746 43.478 22.38 5.89 42.79 3.50
336 499 3.369576 GGTCTATTTTTCTCGGCTGAGGT 60.370 47.826 22.38 6.62 42.79 3.85
337 500 3.118592 AGGTCTATTTTTCTCGGCTGAGG 60.119 47.826 22.38 4.60 42.79 3.86
339 502 3.428999 CGAGGTCTATTTTTCTCGGCTGA 60.429 47.826 0.00 0.00 43.49 4.26
340 503 2.860735 CGAGGTCTATTTTTCTCGGCTG 59.139 50.000 0.00 0.00 43.49 4.85
341 504 2.758979 TCGAGGTCTATTTTTCTCGGCT 59.241 45.455 10.90 0.00 46.11 5.52
342 505 3.117046 CTCGAGGTCTATTTTTCTCGGC 58.883 50.000 3.91 0.00 46.11 5.54
343 506 3.117046 GCTCGAGGTCTATTTTTCTCGG 58.883 50.000 15.58 4.40 46.11 4.63
345 508 3.118738 TGGGCTCGAGGTCTATTTTTCTC 60.119 47.826 15.58 0.00 0.00 2.87
346 509 2.838202 TGGGCTCGAGGTCTATTTTTCT 59.162 45.455 15.58 0.00 0.00 2.52
347 510 3.261981 TGGGCTCGAGGTCTATTTTTC 57.738 47.619 15.58 0.00 0.00 2.29
348 511 3.933861 ATGGGCTCGAGGTCTATTTTT 57.066 42.857 15.58 0.00 0.00 1.94
349 512 4.841246 AGATATGGGCTCGAGGTCTATTTT 59.159 41.667 15.58 0.00 0.00 1.82
350 513 4.221703 CAGATATGGGCTCGAGGTCTATTT 59.778 45.833 15.58 0.00 0.00 1.40
351 514 3.766591 CAGATATGGGCTCGAGGTCTATT 59.233 47.826 15.58 0.00 0.00 1.73
356 519 0.833834 CCCAGATATGGGCTCGAGGT 60.834 60.000 13.65 0.00 42.99 3.85
372 535 4.884668 AACGAGAGATAAAACTGTCCCA 57.115 40.909 0.00 0.00 0.00 4.37
391 554 9.429359 TCTGTCTCAGATATTTCTCTTTCAAAC 57.571 33.333 0.00 0.00 35.39 2.93
418 584 3.236816 GTTGCGTGATGAAACCTCATTG 58.763 45.455 0.00 0.00 42.60 2.82
425 591 3.092081 GCAGGTTGCGTGATGAAAC 57.908 52.632 0.00 0.00 35.11 2.78
454 620 7.286775 TGAGCCAAACATCCCCTAATTATTTAC 59.713 37.037 0.00 0.00 0.00 2.01
455 621 7.358263 TGAGCCAAACATCCCCTAATTATTTA 58.642 34.615 0.00 0.00 0.00 1.40
456 622 6.201591 TGAGCCAAACATCCCCTAATTATTT 58.798 36.000 0.00 0.00 0.00 1.40
460 626 3.628257 CCTGAGCCAAACATCCCCTAATT 60.628 47.826 0.00 0.00 0.00 1.40
462 628 1.284785 CCTGAGCCAAACATCCCCTAA 59.715 52.381 0.00 0.00 0.00 2.69
463 629 0.918983 CCTGAGCCAAACATCCCCTA 59.081 55.000 0.00 0.00 0.00 3.53
464 630 1.693640 CCTGAGCCAAACATCCCCT 59.306 57.895 0.00 0.00 0.00 4.79
465 631 1.380380 CCCTGAGCCAAACATCCCC 60.380 63.158 0.00 0.00 0.00 4.81
466 632 0.681243 GTCCCTGAGCCAAACATCCC 60.681 60.000 0.00 0.00 0.00 3.85
467 633 0.329596 AGTCCCTGAGCCAAACATCC 59.670 55.000 0.00 0.00 0.00 3.51
468 634 2.206576 AAGTCCCTGAGCCAAACATC 57.793 50.000 0.00 0.00 0.00 3.06
469 635 2.683211 AAAGTCCCTGAGCCAAACAT 57.317 45.000 0.00 0.00 0.00 2.71
470 636 2.452600 AAAAGTCCCTGAGCCAAACA 57.547 45.000 0.00 0.00 0.00 2.83
471 637 4.929819 TTAAAAAGTCCCTGAGCCAAAC 57.070 40.909 0.00 0.00 0.00 2.93
472 638 4.526650 GGATTAAAAAGTCCCTGAGCCAAA 59.473 41.667 0.00 0.00 0.00 3.28
473 639 4.086457 GGATTAAAAAGTCCCTGAGCCAA 58.914 43.478 0.00 0.00 0.00 4.52
474 640 3.697166 GGATTAAAAAGTCCCTGAGCCA 58.303 45.455 0.00 0.00 0.00 4.75
482 648 7.184067 TCTAGTCTCTGGGATTAAAAAGTCC 57.816 40.000 0.00 0.00 0.00 3.85
483 649 9.503399 TTTTCTAGTCTCTGGGATTAAAAAGTC 57.497 33.333 0.00 0.00 0.00 3.01
484 650 9.862149 TTTTTCTAGTCTCTGGGATTAAAAAGT 57.138 29.630 0.00 0.00 0.00 2.66
486 652 9.862149 ACTTTTTCTAGTCTCTGGGATTAAAAA 57.138 29.630 0.00 0.00 0.00 1.94
487 653 9.862149 AACTTTTTCTAGTCTCTGGGATTAAAA 57.138 29.630 0.00 0.00 0.00 1.52
488 654 9.503399 GAACTTTTTCTAGTCTCTGGGATTAAA 57.497 33.333 0.00 0.00 0.00 1.52
489 655 8.101419 GGAACTTTTTCTAGTCTCTGGGATTAA 58.899 37.037 0.00 0.00 31.71 1.40
490 656 7.458170 AGGAACTTTTTCTAGTCTCTGGGATTA 59.542 37.037 0.00 0.00 27.25 1.75
491 657 6.273495 AGGAACTTTTTCTAGTCTCTGGGATT 59.727 38.462 0.00 0.00 27.25 3.01
492 658 5.788014 AGGAACTTTTTCTAGTCTCTGGGAT 59.212 40.000 0.00 0.00 27.25 3.85
493 659 5.155905 AGGAACTTTTTCTAGTCTCTGGGA 58.844 41.667 0.00 0.00 27.25 4.37
494 660 5.491323 AGGAACTTTTTCTAGTCTCTGGG 57.509 43.478 0.00 0.00 27.25 4.45
495 661 8.904099 TTTTAGGAACTTTTTCTAGTCTCTGG 57.096 34.615 0.00 0.00 41.75 3.86
499 665 9.339850 GGACTTTTTAGGAACTTTTTCTAGTCT 57.660 33.333 0.00 0.00 41.75 3.24
500 666 8.566260 GGGACTTTTTAGGAACTTTTTCTAGTC 58.434 37.037 0.00 0.00 41.75 2.59
501 667 8.280084 AGGGACTTTTTAGGAACTTTTTCTAGT 58.720 33.333 0.00 0.00 34.75 2.57
502 668 8.693120 AGGGACTTTTTAGGAACTTTTTCTAG 57.307 34.615 0.00 0.00 34.75 2.43
503 669 9.788889 CTAGGGACTTTTTAGGAACTTTTTCTA 57.211 33.333 0.00 0.00 39.49 2.10
504 670 8.500238 TCTAGGGACTTTTTAGGAACTTTTTCT 58.500 33.333 0.00 0.00 39.49 2.52
505 671 8.687292 TCTAGGGACTTTTTAGGAACTTTTTC 57.313 34.615 0.00 0.00 39.49 2.29
506 672 9.483489 TTTCTAGGGACTTTTTAGGAACTTTTT 57.517 29.630 0.00 0.00 39.49 1.94
507 673 8.910944 GTTTCTAGGGACTTTTTAGGAACTTTT 58.089 33.333 0.00 0.00 39.49 2.27
508 674 7.504911 GGTTTCTAGGGACTTTTTAGGAACTTT 59.495 37.037 0.00 0.00 39.49 2.66
509 675 7.002879 GGTTTCTAGGGACTTTTTAGGAACTT 58.997 38.462 0.00 0.00 39.49 2.66
510 676 6.102174 TGGTTTCTAGGGACTTTTTAGGAACT 59.898 38.462 0.00 0.00 41.75 3.01
511 677 6.301486 TGGTTTCTAGGGACTTTTTAGGAAC 58.699 40.000 0.00 0.00 41.75 3.62
512 678 6.518516 TGGTTTCTAGGGACTTTTTAGGAA 57.481 37.500 0.00 0.00 41.75 3.36
513 679 6.518516 TTGGTTTCTAGGGACTTTTTAGGA 57.481 37.500 0.00 0.00 41.75 2.94
514 680 7.776618 ATTTGGTTTCTAGGGACTTTTTAGG 57.223 36.000 0.00 0.00 41.75 2.69
543 709 5.565439 CGACTTTTTCTAGTCCCCGTAGAAA 60.565 44.000 1.96 1.96 42.24 2.52
544 710 4.082571 CGACTTTTTCTAGTCCCCGTAGAA 60.083 45.833 0.00 0.00 41.18 2.10
545 711 3.441572 CGACTTTTTCTAGTCCCCGTAGA 59.558 47.826 0.00 0.00 41.18 2.59
546 712 3.192212 ACGACTTTTTCTAGTCCCCGTAG 59.808 47.826 0.00 0.00 41.18 3.51
547 713 3.157087 ACGACTTTTTCTAGTCCCCGTA 58.843 45.455 0.00 0.00 41.18 4.02
548 714 1.966354 ACGACTTTTTCTAGTCCCCGT 59.034 47.619 0.00 0.00 41.18 5.28
549 715 2.738013 ACGACTTTTTCTAGTCCCCG 57.262 50.000 0.00 0.00 41.18 5.73
550 716 3.766051 TCCTACGACTTTTTCTAGTCCCC 59.234 47.826 0.00 0.00 41.18 4.81
551 717 4.742417 GTCCTACGACTTTTTCTAGTCCC 58.258 47.826 0.00 0.00 41.18 4.46
564 730 3.655276 TTGGTTCAGAAGTCCTACGAC 57.345 47.619 0.00 0.00 39.50 4.34
565 731 3.385433 TGTTTGGTTCAGAAGTCCTACGA 59.615 43.478 0.00 0.00 0.00 3.43
566 732 3.493503 GTGTTTGGTTCAGAAGTCCTACG 59.506 47.826 0.00 0.00 0.00 3.51
567 733 3.813724 GGTGTTTGGTTCAGAAGTCCTAC 59.186 47.826 0.00 0.00 0.00 3.18
568 734 3.181448 GGGTGTTTGGTTCAGAAGTCCTA 60.181 47.826 0.00 0.00 0.00 2.94
569 735 2.422945 GGGTGTTTGGTTCAGAAGTCCT 60.423 50.000 0.00 0.00 0.00 3.85
570 736 1.954382 GGGTGTTTGGTTCAGAAGTCC 59.046 52.381 0.00 0.00 0.00 3.85
571 737 2.879026 GAGGGTGTTTGGTTCAGAAGTC 59.121 50.000 0.00 0.00 0.00 3.01
572 738 2.509964 AGAGGGTGTTTGGTTCAGAAGT 59.490 45.455 0.00 0.00 0.00 3.01
573 739 3.214696 AGAGGGTGTTTGGTTCAGAAG 57.785 47.619 0.00 0.00 0.00 2.85
574 740 3.662759 AAGAGGGTGTTTGGTTCAGAA 57.337 42.857 0.00 0.00 0.00 3.02
575 741 4.457466 GTTAAGAGGGTGTTTGGTTCAGA 58.543 43.478 0.00 0.00 0.00 3.27
576 742 3.568430 GGTTAAGAGGGTGTTTGGTTCAG 59.432 47.826 0.00 0.00 0.00 3.02
577 743 3.558033 GGTTAAGAGGGTGTTTGGTTCA 58.442 45.455 0.00 0.00 0.00 3.18
578 744 2.551032 CGGTTAAGAGGGTGTTTGGTTC 59.449 50.000 0.00 0.00 0.00 3.62
579 745 2.578786 CGGTTAAGAGGGTGTTTGGTT 58.421 47.619 0.00 0.00 0.00 3.67
580 746 1.202842 CCGGTTAAGAGGGTGTTTGGT 60.203 52.381 0.00 0.00 0.00 3.67
581 747 1.530323 CCGGTTAAGAGGGTGTTTGG 58.470 55.000 0.00 0.00 0.00 3.28
582 748 1.530323 CCCGGTTAAGAGGGTGTTTG 58.470 55.000 0.00 0.00 42.67 2.93
589 755 4.171103 CCCCGCCCGGTTAAGAGG 62.171 72.222 0.00 0.00 0.00 3.69
590 756 4.851179 GCCCCGCCCGGTTAAGAG 62.851 72.222 0.00 0.00 0.00 2.85
625 791 4.840005 GAGAAGCTTCCGCCCCCG 62.840 72.222 22.81 0.00 36.60 5.73
626 792 4.491409 GGAGAAGCTTCCGCCCCC 62.491 72.222 22.81 12.25 36.60 5.40
627 793 3.049080 ATGGAGAAGCTTCCGCCCC 62.049 63.158 25.10 19.72 40.27 5.80
645 811 3.977244 TCTGCGTCTCAGCGTGCA 61.977 61.111 0.00 0.00 42.56 4.57
751 923 1.004679 GGAGGGTTTGACCGCGTAA 60.005 57.895 4.92 0.00 39.83 3.18
770 942 0.179020 GGCGATGGATGATGGTTGGA 60.179 55.000 0.00 0.00 0.00 3.53
848 1036 2.404186 CCGAGGTTTTAAGCGGGGC 61.404 63.158 0.00 0.00 40.08 5.80
988 1249 2.954020 TTCTCCATGCCGACGATCGC 62.954 60.000 16.60 7.26 38.82 4.58
995 1256 0.107993 CAGCTTCTTCTCCATGCCGA 60.108 55.000 0.00 0.00 0.00 5.54
1360 1668 8.950007 TTAGTAACCAGGAAGGAAATCAATTT 57.050 30.769 0.00 0.00 41.22 1.82
1403 1731 2.797330 CGCCTGCACACACACAAA 59.203 55.556 0.00 0.00 0.00 2.83
1765 2163 6.914757 GCTACTGAAAAATTGATCATGCCTAC 59.085 38.462 0.00 0.00 0.00 3.18
1767 2165 5.419788 TGCTACTGAAAAATTGATCATGCCT 59.580 36.000 0.00 0.00 0.00 4.75
1769 2167 6.327934 ACTGCTACTGAAAAATTGATCATGC 58.672 36.000 0.00 0.00 0.00 4.06
1778 2176 5.237344 GTGACACTGACTGCTACTGAAAAAT 59.763 40.000 0.00 0.00 0.00 1.82
1843 2241 7.361713 CGAGTTTATCTGAATTTTGGCCACTAA 60.362 37.037 3.88 2.78 0.00 2.24
1847 2245 5.007034 TCGAGTTTATCTGAATTTTGGCCA 58.993 37.500 0.00 0.00 0.00 5.36
1848 2246 5.560966 TCGAGTTTATCTGAATTTTGGCC 57.439 39.130 0.00 0.00 0.00 5.36
1851 2249 8.733857 AAAAGCTCGAGTTTATCTGAATTTTG 57.266 30.769 15.26 0.00 0.00 2.44
1876 2274 3.822167 TGTGCAGCAGAATCTTGAATTGA 59.178 39.130 0.00 0.00 0.00 2.57
1924 2376 6.349611 GCGCTGGGATGAATGAATTATACAAT 60.350 38.462 0.00 0.00 0.00 2.71
1926 2378 4.455533 GCGCTGGGATGAATGAATTATACA 59.544 41.667 0.00 0.00 0.00 2.29
2026 2504 3.561313 GCTGGGGAAAGTAACAGATTCCA 60.561 47.826 6.16 0.00 43.56 3.53
2034 2512 2.044555 GCCGGCTGGGGAAAGTAAC 61.045 63.158 22.15 0.00 35.78 2.50
2035 2513 2.353573 GCCGGCTGGGGAAAGTAA 59.646 61.111 22.15 0.00 35.78 2.24
2091 2589 8.624701 ACGAATTATGAATTCAGAAATTGCTG 57.375 30.769 25.06 7.16 45.94 4.41
2092 2590 7.641411 CGACGAATTATGAATTCAGAAATTGCT 59.359 33.333 25.06 15.00 45.94 3.91
2100 2598 6.575083 AGTGACGACGAATTATGAATTCAG 57.425 37.500 14.54 1.46 45.94 3.02
2101 2599 6.961359 AAGTGACGACGAATTATGAATTCA 57.039 33.333 11.26 11.26 45.94 2.57
2102 2600 8.752254 TGATAAGTGACGACGAATTATGAATTC 58.248 33.333 0.00 0.00 42.99 2.17
2103 2601 8.642908 TGATAAGTGACGACGAATTATGAATT 57.357 30.769 0.00 0.00 0.00 2.17
2125 2624 3.181471 GGTTCAGGTCGATGTCTGATGAT 60.181 47.826 13.99 0.00 39.42 2.45
2183 2682 2.092646 AGTTGGGTTAATCTATGCGCCA 60.093 45.455 4.18 0.00 0.00 5.69
2249 2753 1.827969 AGCTAGGAGCAACCACACTAG 59.172 52.381 0.64 0.00 45.56 2.57
2295 2810 2.747177 TCTCTCTCTCTCTCTCCGTCT 58.253 52.381 0.00 0.00 0.00 4.18
2302 2817 8.872845 GTTTGAATTTGAATCTCTCTCTCTCTC 58.127 37.037 0.00 0.00 0.00 3.20
2303 2818 8.373981 TGTTTGAATTTGAATCTCTCTCTCTCT 58.626 33.333 0.00 0.00 0.00 3.10
2306 2821 7.242783 GCTGTTTGAATTTGAATCTCTCTCTC 58.757 38.462 0.00 0.00 0.00 3.20
2307 2822 6.128336 CGCTGTTTGAATTTGAATCTCTCTCT 60.128 38.462 0.00 0.00 0.00 3.10
2308 2823 6.020372 CGCTGTTTGAATTTGAATCTCTCTC 58.980 40.000 0.00 0.00 0.00 3.20
2309 2824 5.618640 GCGCTGTTTGAATTTGAATCTCTCT 60.619 40.000 0.00 0.00 0.00 3.10
2316 2831 2.863137 GTTGGCGCTGTTTGAATTTGAA 59.137 40.909 7.64 0.00 0.00 2.69
2345 2860 0.453782 CCGGTTTTCGTGCGGATTTC 60.454 55.000 0.00 0.00 37.11 2.17
2384 2899 1.070445 GTCACAGGCTCACAGCTGT 59.930 57.895 15.25 15.25 41.99 4.40
2388 2903 1.888215 AATGTGTCACAGGCTCACAG 58.112 50.000 12.03 0.00 43.61 3.66
2389 2904 2.158769 AGAAATGTGTCACAGGCTCACA 60.159 45.455 12.03 8.92 44.29 3.58
2390 2905 2.481952 GAGAAATGTGTCACAGGCTCAC 59.518 50.000 19.54 9.23 0.00 3.51
2391 2906 2.550855 GGAGAAATGTGTCACAGGCTCA 60.551 50.000 23.03 0.00 30.22 4.26
2392 2907 2.079925 GGAGAAATGTGTCACAGGCTC 58.920 52.381 12.03 15.50 0.00 4.70
2393 2908 1.421268 TGGAGAAATGTGTCACAGGCT 59.579 47.619 12.03 8.11 0.00 4.58
2394 2909 1.537202 GTGGAGAAATGTGTCACAGGC 59.463 52.381 12.03 3.36 0.00 4.85
2395 2910 2.549754 GTGTGGAGAAATGTGTCACAGG 59.450 50.000 12.03 0.00 38.74 4.00
2426 2941 1.478510 GTCCAGATCAGTCGACCATGT 59.521 52.381 13.01 0.00 0.00 3.21
2462 2978 4.096231 CAGCGACCATCCAGATATCTCTAG 59.904 50.000 1.03 0.00 0.00 2.43
2504 3037 0.028902 GGTTGCGGTTGTGAAGTCAC 59.971 55.000 4.43 4.43 46.59 3.67
2509 3042 1.404315 GGTTTTGGTTGCGGTTGTGAA 60.404 47.619 0.00 0.00 0.00 3.18
2568 3102 1.722011 TCCGACGGAATCAAAGAAGC 58.278 50.000 15.79 0.00 0.00 3.86
2577 3111 0.953960 GGCTGTGTTTCCGACGGAAT 60.954 55.000 28.87 0.00 41.71 3.01
2622 3156 2.691011 AGGAGATTCCTCTGCTACGAAC 59.309 50.000 0.00 0.00 45.66 3.95
2658 3196 2.143008 TCGCTTTCACGACAGCTAAA 57.857 45.000 3.88 0.00 37.09 1.85
2684 3226 6.073765 CGAGACAGTAACAAAACAGCTGTAAT 60.074 38.462 22.01 9.71 40.06 1.89
2800 3351 3.861113 GGTGTCATACAATGCATTGCTTG 59.139 43.478 33.94 29.08 41.38 4.01
2812 3363 0.916086 GATGGGGTGGGTGTCATACA 59.084 55.000 0.00 0.00 0.00 2.29
2825 3376 2.758327 TCCGACTGGACGATGGGG 60.758 66.667 0.00 0.00 40.17 4.96
2836 3387 0.401979 ATCCCCATTCCCATCCGACT 60.402 55.000 0.00 0.00 0.00 4.18
2876 3427 1.813192 GGAGGAGGAAGCAGAGACG 59.187 63.158 0.00 0.00 0.00 4.18
2904 3457 2.543777 ACTACTGCTCGAGCCAAAAA 57.456 45.000 33.23 14.43 41.18 1.94
2983 3537 1.735559 GAGACGTTGGTGCGGGTAC 60.736 63.158 0.00 0.00 35.98 3.34
2984 3538 1.870055 GAGAGACGTTGGTGCGGGTA 61.870 60.000 0.00 0.00 35.98 3.69
2985 3539 3.222354 GAGAGACGTTGGTGCGGGT 62.222 63.158 0.00 0.00 35.98 5.28
3090 3648 2.898840 AGCAATCGCATCTGCCGG 60.899 61.111 0.00 0.00 42.27 6.13
3116 3675 9.265862 AGAGGAGAAGAAGAAGAATATGAAGAA 57.734 33.333 0.00 0.00 0.00 2.52
3117 3676 8.837099 AGAGGAGAAGAAGAAGAATATGAAGA 57.163 34.615 0.00 0.00 0.00 2.87
3118 3677 8.917088 AGAGAGGAGAAGAAGAAGAATATGAAG 58.083 37.037 0.00 0.00 0.00 3.02
3120 3679 7.838696 ACAGAGAGGAGAAGAAGAAGAATATGA 59.161 37.037 0.00 0.00 0.00 2.15
3121 3680 8.010733 ACAGAGAGGAGAAGAAGAAGAATATG 57.989 38.462 0.00 0.00 0.00 1.78
3150 6966 4.280677 TCCAGTGATTGAAACCATGAAACC 59.719 41.667 0.00 0.00 0.00 3.27
3151 6967 5.222631 GTCCAGTGATTGAAACCATGAAAC 58.777 41.667 0.00 0.00 0.00 2.78
3152 6968 4.023279 CGTCCAGTGATTGAAACCATGAAA 60.023 41.667 0.00 0.00 0.00 2.69
3153 6969 3.501828 CGTCCAGTGATTGAAACCATGAA 59.498 43.478 0.00 0.00 0.00 2.57
3154 6970 3.073678 CGTCCAGTGATTGAAACCATGA 58.926 45.455 0.00 0.00 0.00 3.07
3155 6971 2.813754 ACGTCCAGTGATTGAAACCATG 59.186 45.455 0.00 0.00 0.00 3.66
3156 6972 3.074412 GACGTCCAGTGATTGAAACCAT 58.926 45.455 3.51 0.00 0.00 3.55
3157 6973 2.158885 TGACGTCCAGTGATTGAAACCA 60.159 45.455 14.12 0.00 0.00 3.67
3158 6974 2.223377 GTGACGTCCAGTGATTGAAACC 59.777 50.000 14.12 0.00 0.00 3.27
3190 7006 3.942115 TCGTTTGACAATTCACAGTTCCA 59.058 39.130 0.00 0.00 0.00 3.53
3191 7007 4.545823 TCGTTTGACAATTCACAGTTCC 57.454 40.909 0.00 0.00 0.00 3.62
3192 7008 4.433304 CGTTCGTTTGACAATTCACAGTTC 59.567 41.667 0.00 0.00 0.00 3.01
3223 7047 2.554142 GGACTAATTTTACCCGTCCGG 58.446 52.381 0.00 0.00 35.34 5.14
3229 7053 1.302366 CGCCCGGACTAATTTTACCC 58.698 55.000 0.73 0.00 0.00 3.69
3325 7149 7.332182 CCTCTCAAGTCACTTTTACCAACTATC 59.668 40.741 0.00 0.00 0.00 2.08
3414 7246 9.627123 TCAAAGTCCTCTTCTTTTCTCATTTTA 57.373 29.630 0.00 0.00 33.58 1.52
3415 7247 8.525290 TCAAAGTCCTCTTCTTTTCTCATTTT 57.475 30.769 0.00 0.00 33.58 1.82
3421 7253 7.888250 ACAAATCAAAGTCCTCTTCTTTTCT 57.112 32.000 0.00 0.00 33.58 2.52
3480 7316 0.459585 TCGTGATACGCTGGCCTTTC 60.460 55.000 3.32 0.00 42.21 2.62
3517 7353 8.413309 AAAGAAAAAGAACATCATCCAGATCA 57.587 30.769 0.00 0.00 33.72 2.92
3527 7363 5.564127 CGGTTCGCTAAAGAAAAAGAACATC 59.436 40.000 8.14 0.00 39.53 3.06
3608 7444 5.838529 ACTAAAATATATTTGCCCCGTTGC 58.161 37.500 11.42 0.00 0.00 4.17
3609 7445 9.974980 AATTACTAAAATATATTTGCCCCGTTG 57.025 29.630 11.42 0.00 0.00 4.10
3611 7447 9.357161 TGAATTACTAAAATATATTTGCCCCGT 57.643 29.630 11.42 7.21 0.00 5.28
3630 7466 8.269424 CACTCGTAATTGATGCTACTGAATTAC 58.731 37.037 0.00 0.00 37.68 1.89
3638 7474 5.340803 TGAGACACTCGTAATTGATGCTAC 58.659 41.667 0.00 0.00 32.35 3.58
3642 7478 4.621460 ACGTTGAGACACTCGTAATTGATG 59.379 41.667 0.00 0.00 34.78 3.07
3693 7529 6.074835 CGATCTTACTTACGACAATGATGTGG 60.075 42.308 0.00 0.00 40.74 4.17
3700 7536 5.100259 CCACACGATCTTACTTACGACAAT 58.900 41.667 0.00 0.00 0.00 2.71
3701 7537 4.478699 CCACACGATCTTACTTACGACAA 58.521 43.478 0.00 0.00 0.00 3.18
3706 7542 4.106029 TCTGCCACACGATCTTACTTAC 57.894 45.455 0.00 0.00 0.00 2.34
3717 7553 2.772568 TTTTCATGTTCTGCCACACG 57.227 45.000 0.00 0.00 0.00 4.49
3746 7582 8.960591 AGGGAAAGTGTCATTTATGTGAATTAG 58.039 33.333 0.00 0.00 0.00 1.73
3747 7583 8.877864 AGGGAAAGTGTCATTTATGTGAATTA 57.122 30.769 0.00 0.00 0.00 1.40
3760 7596 6.843752 TCACCTTAATTTAGGGAAAGTGTCA 58.156 36.000 14.73 0.00 39.76 3.58
3767 7603 6.954232 ACGAGAATCACCTTAATTTAGGGAA 58.046 36.000 14.73 2.88 39.76 3.97
3768 7604 6.555463 ACGAGAATCACCTTAATTTAGGGA 57.445 37.500 14.73 9.24 39.76 4.20
3770 7606 8.263940 TCAAACGAGAATCACCTTAATTTAGG 57.736 34.615 8.97 8.97 41.31 2.69
3771 7607 8.391106 CCTCAAACGAGAATCACCTTAATTTAG 58.609 37.037 0.00 0.00 31.68 1.85
3781 7617 4.425577 AAATGCCTCAAACGAGAATCAC 57.574 40.909 0.00 0.00 31.68 3.06
3787 7623 3.252215 TGTGGTTAAATGCCTCAAACGAG 59.748 43.478 0.00 0.00 0.00 4.18
3789 7625 3.004315 AGTGTGGTTAAATGCCTCAAACG 59.996 43.478 0.00 0.00 32.26 3.60


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.