Multiple sequence alignment - TraesCS4D01G339000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G339000 chr4D 100.000 8131 0 0 1 8131 497040142 497032012 0.000000e+00 15016.0
1 TraesCS4D01G339000 chr4D 82.500 280 20 9 7793 8045 27218067 27217790 1.370000e-52 219.0
2 TraesCS4D01G339000 chr4D 82.500 280 20 12 7793 8045 139444391 139444114 1.370000e-52 219.0
3 TraesCS4D01G339000 chr4D 100.000 37 0 0 7730 7766 61567428 61567392 1.460000e-07 69.4
4 TraesCS4D01G339000 chr4B 92.732 3825 144 46 1 3773 637396934 637393192 0.000000e+00 5400.0
5 TraesCS4D01G339000 chr4B 94.017 3109 129 22 3882 6963 637393176 637390098 0.000000e+00 4658.0
6 TraesCS4D01G339000 chr4B 95.556 495 17 3 7013 7502 637390016 637389522 0.000000e+00 787.0
7 TraesCS4D01G339000 chr4B 89.247 186 6 6 7959 8131 637389123 637388939 3.820000e-53 220.0
8 TraesCS4D01G339000 chr4B 82.486 177 23 6 2049 2223 347600018 347600188 1.830000e-31 148.0
9 TraesCS4D01G339000 chr5A 93.247 3080 135 27 3860 6892 676599415 676596362 0.000000e+00 4468.0
10 TraesCS4D01G339000 chr5A 96.248 2612 78 6 1033 3624 676602124 676599513 0.000000e+00 4263.0
11 TraesCS4D01G339000 chr5A 89.417 737 42 13 7012 7733 676596254 676595539 0.000000e+00 896.0
12 TraesCS4D01G339000 chr5A 83.664 857 55 42 202 1010 676603415 676602596 0.000000e+00 728.0
13 TraesCS4D01G339000 chr5A 83.688 282 19 11 7790 8045 172543123 172543403 2.930000e-59 241.0
14 TraesCS4D01G339000 chr2D 85.263 285 13 7 7790 8047 442138565 442138847 4.840000e-67 267.0
15 TraesCS4D01G339000 chr2D 83.513 279 19 11 7793 8045 149820317 149820040 1.360000e-57 235.0
16 TraesCS4D01G339000 chr2D 93.333 105 4 3 3771 3873 603651337 603651234 1.410000e-32 152.0
17 TraesCS4D01G339000 chr3D 83.986 281 16 12 7793 8045 177060350 177060071 8.150000e-60 243.0
18 TraesCS4D01G339000 chr3D 96.774 93 3 0 3771 3863 392282076 392282168 1.090000e-33 156.0
19 TraesCS4D01G339000 chr3D 95.699 93 4 0 3771 3863 164808307 164808399 5.080000e-32 150.0
20 TraesCS4D01G339000 chr4A 83.630 281 18 11 7793 8046 60655448 60655169 1.050000e-58 239.0
21 TraesCS4D01G339000 chr4A 78.510 349 49 14 1834 2175 721817840 721817511 1.070000e-48 206.0
22 TraesCS4D01G339000 chr2B 83.274 281 18 15 7793 8046 168840804 168840526 1.760000e-56 231.0
23 TraesCS4D01G339000 chr2B 96.739 92 3 0 3765 3856 696361644 696361735 3.930000e-33 154.0
24 TraesCS4D01G339000 chr2B 100.000 32 0 0 7729 7760 22314635 22314604 8.810000e-05 60.2
25 TraesCS4D01G339000 chr2B 100.000 32 0 0 7735 7766 441039777 441039746 8.810000e-05 60.2
26 TraesCS4D01G339000 chr6D 83.214 280 18 13 7793 8045 163255115 163254838 6.350000e-56 230.0
27 TraesCS4D01G339000 chr6D 82.143 280 21 13 7793 8045 304476509 304476232 6.390000e-51 213.0
28 TraesCS4D01G339000 chr2A 82.374 278 21 11 7794 8044 27947505 27947781 4.940000e-52 217.0
29 TraesCS4D01G339000 chr2A 83.721 172 21 3 2051 2220 6492021 6492187 1.090000e-33 156.0
30 TraesCS4D01G339000 chr7D 79.720 286 28 16 7795 8055 352331717 352331437 6.480000e-41 180.0
31 TraesCS4D01G339000 chr7A 79.649 285 29 16 7795 8055 632073901 632073622 2.330000e-40 178.0
32 TraesCS4D01G339000 chr6B 85.311 177 18 4 2049 2223 270820049 270820219 8.390000e-40 176.0
33 TraesCS4D01G339000 chr1D 98.851 87 1 0 3772 3858 321678011 321677925 1.090000e-33 156.0
34 TraesCS4D01G339000 chr1D 96.629 89 3 0 3768 3856 393970748 393970836 1.830000e-31 148.0
35 TraesCS4D01G339000 chr1D 94.444 90 5 0 7958 8047 434436251 434436340 1.100000e-28 139.0
36 TraesCS4D01G339000 chr3B 95.789 95 2 2 3772 3864 238314313 238314407 1.410000e-32 152.0
37 TraesCS4D01G339000 chr3B 94.845 97 5 0 3760 3856 629555678 629555774 1.410000e-32 152.0
38 TraesCS4D01G339000 chr1B 94.737 95 5 0 3764 3858 142723449 142723543 1.830000e-31 148.0
39 TraesCS4D01G339000 chr5D 82.703 185 12 13 7878 8044 61070263 61070081 6.580000e-31 147.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G339000 chr4D 497032012 497040142 8130 True 15016.00 15016 100.000 1 8131 1 chr4D.!!$R4 8130
1 TraesCS4D01G339000 chr4B 637388939 637396934 7995 True 2766.25 5400 92.888 1 8131 4 chr4B.!!$R1 8130
2 TraesCS4D01G339000 chr5A 676595539 676603415 7876 True 2588.75 4468 90.644 202 7733 4 chr5A.!!$R1 7531

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
64 65 0.243636 CCCAAACCCGTCTGAAATGC 59.756 55.000 0.00 0.00 0.00 3.56 F
70 71 0.680921 CCCGTCTGAAATGCATGGGT 60.681 55.000 0.00 0.00 31.89 4.51 F
545 605 0.834612 TCGACTCCTCTCCTCTCCTC 59.165 60.000 0.00 0.00 0.00 3.71 F
546 606 0.837272 CGACTCCTCTCCTCTCCTCT 59.163 60.000 0.00 0.00 0.00 3.69 F
550 610 0.923358 TCCTCTCCTCTCCTCTGTCC 59.077 60.000 0.00 0.00 0.00 4.02 F
551 611 0.926293 CCTCTCCTCTCCTCTGTCCT 59.074 60.000 0.00 0.00 0.00 3.85 F
768 847 1.189524 TTTCCTCCGTCCATCCGTGT 61.190 55.000 0.00 0.00 0.00 4.49 F
2952 3523 1.277557 GTGGTGAGAGGCATGAGAGTT 59.722 52.381 0.00 0.00 0.00 3.01 F
3454 4029 0.743345 GGTCTGTACCGATGTTGCCC 60.743 60.000 0.00 0.00 35.62 5.36 F
3456 4031 0.981183 TCTGTACCGATGTTGCCCTT 59.019 50.000 0.00 0.00 0.00 3.95 F
3950 4531 1.017387 CGCAGGTTCTTAAGGATGGC 58.983 55.000 1.85 0.00 0.00 4.40 F
4610 5191 1.409064 TCTGGACGGATTCTGAATCGG 59.591 52.381 26.69 26.69 42.13 4.18 F
5417 6032 0.316841 TTGATTGTTTTGCTCGGCCC 59.683 50.000 0.00 0.00 0.00 5.80 F
6356 6976 0.321996 ACCCTCTTGAAGAGCGTTCC 59.678 55.000 16.57 0.00 40.98 3.62 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1815 2386 1.279496 AGTGACTGCTCATGGCCTTA 58.721 50.000 3.32 0.00 40.92 2.69 R
1908 2479 2.745884 CCGTTCATTGCCGCCTCA 60.746 61.111 0.00 0.00 0.00 3.86 R
1965 2536 3.689872 AAGTAGCTGATCAGGTAGGGA 57.310 47.619 30.02 12.40 41.46 4.20 R
2670 3241 1.188219 AAGCAGAGAGAACGCCTCCA 61.188 55.000 2.23 0.00 42.97 3.86 R
2952 3523 1.596603 CAATCACACCACAGACTGCA 58.403 50.000 1.25 0.00 0.00 4.41 R
3080 3655 7.759886 GGAGCAGAAGGAAAATGTAATTAAACC 59.240 37.037 0.00 0.00 33.67 3.27 R
3288 3863 2.885135 TGCCTCTGTCACCAATGATT 57.115 45.000 0.00 0.00 37.14 2.57 R
4229 4810 0.106719 CTCGCTCCCTCTCCTCTTCT 60.107 60.000 0.00 0.00 0.00 2.85 R
4643 5224 0.514691 GAAAAGGCACAGACGAGCAG 59.485 55.000 0.00 0.00 0.00 4.24 R
4922 5513 1.004277 TCCCAGGTTAATGTCAGCACC 59.996 52.381 0.00 0.00 0.00 5.01 R
5417 6032 1.870993 GCTGCAAGGCTGGAAAACAAG 60.871 52.381 0.00 0.00 0.00 3.16 R
6609 7247 0.035152 CCAGTACTGCAATGGAGCCA 60.035 55.000 17.86 0.00 36.09 4.75 R
6876 7514 0.250124 TCGACTTGGCCAATCGTGTT 60.250 50.000 31.23 12.49 37.16 3.32 R
7859 8597 0.678950 ACGGGGTTTCTGCAAATTGG 59.321 50.000 0.00 0.00 0.00 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
58 59 1.002990 GGTACCCCAAACCCGTCTG 60.003 63.158 0.00 0.00 0.00 3.51
62 63 0.481128 ACCCCAAACCCGTCTGAAAT 59.519 50.000 0.00 0.00 0.00 2.17
64 65 0.243636 CCCAAACCCGTCTGAAATGC 59.756 55.000 0.00 0.00 0.00 3.56
65 66 0.958091 CCAAACCCGTCTGAAATGCA 59.042 50.000 0.00 0.00 0.00 3.96
67 68 2.598589 CAAACCCGTCTGAAATGCATG 58.401 47.619 0.00 0.00 0.00 4.06
70 71 0.680921 CCCGTCTGAAATGCATGGGT 60.681 55.000 0.00 0.00 31.89 4.51
73 74 1.838112 GTCTGAAATGCATGGGTGGA 58.162 50.000 0.00 0.00 0.00 4.02
74 75 1.474077 GTCTGAAATGCATGGGTGGAC 59.526 52.381 0.00 2.26 0.00 4.02
97 98 2.734591 GTCACTGGCTGGTCACGA 59.265 61.111 0.00 0.00 0.00 4.35
98 99 1.373497 GTCACTGGCTGGTCACGAG 60.373 63.158 0.00 0.00 0.00 4.18
103 104 1.072331 ACTGGCTGGTCACGAGATTTT 59.928 47.619 0.00 0.00 0.00 1.82
110 111 2.178912 GTCACGAGATTTTGACCCCA 57.821 50.000 0.00 0.00 36.85 4.96
112 113 1.974957 TCACGAGATTTTGACCCCAGA 59.025 47.619 0.00 0.00 0.00 3.86
113 114 2.076863 CACGAGATTTTGACCCCAGAC 58.923 52.381 0.00 0.00 0.00 3.51
115 116 1.739067 GAGATTTTGACCCCAGACGG 58.261 55.000 0.00 0.00 0.00 4.79
130 131 2.292016 CAGACGGGTGTAGATGCTCTAG 59.708 54.545 0.00 0.00 28.01 2.43
143 144 2.876091 TGCTCTAGTTGTGCACGTATC 58.124 47.619 13.13 2.40 39.83 2.24
147 148 4.092771 TCTAGTTGTGCACGTATCACTC 57.907 45.455 13.13 11.93 35.58 3.51
148 149 1.698165 AGTTGTGCACGTATCACTCG 58.302 50.000 13.13 0.00 35.58 4.18
155 156 2.031944 TGCACGTATCACTCGCTCTATC 60.032 50.000 0.00 0.00 0.00 2.08
172 173 7.114953 TCGCTCTATCTAAATTAATTGACGCAG 59.885 37.037 0.39 0.00 0.00 5.18
173 174 7.114953 CGCTCTATCTAAATTAATTGACGCAGA 59.885 37.037 0.39 2.38 0.00 4.26
185 186 8.542497 TTAATTGACGCAGATTTAGTACAACT 57.458 30.769 0.00 0.00 0.00 3.16
187 188 4.491676 TGACGCAGATTTAGTACAACTCC 58.508 43.478 0.00 0.00 0.00 3.85
367 388 4.405756 TGGAAAATTAAGGCCAACCCTA 57.594 40.909 5.01 0.00 45.62 3.53
399 430 1.524008 GAGGAAAAACCCACCCGCAG 61.524 60.000 0.00 0.00 40.05 5.18
408 439 2.125350 CACCCGCAGCTCTCCTTC 60.125 66.667 0.00 0.00 0.00 3.46
418 453 1.743252 CTCTCCTTCCTTGCCGTGC 60.743 63.158 0.00 0.00 0.00 5.34
503 561 2.757868 TCAGTGGAAAACCAACACCAAG 59.242 45.455 0.00 0.00 35.79 3.61
545 605 0.834612 TCGACTCCTCTCCTCTCCTC 59.165 60.000 0.00 0.00 0.00 3.71
546 606 0.837272 CGACTCCTCTCCTCTCCTCT 59.163 60.000 0.00 0.00 0.00 3.69
547 607 1.475034 CGACTCCTCTCCTCTCCTCTG 60.475 61.905 0.00 0.00 0.00 3.35
548 608 1.564348 GACTCCTCTCCTCTCCTCTGT 59.436 57.143 0.00 0.00 0.00 3.41
549 609 1.564348 ACTCCTCTCCTCTCCTCTGTC 59.436 57.143 0.00 0.00 0.00 3.51
550 610 0.923358 TCCTCTCCTCTCCTCTGTCC 59.077 60.000 0.00 0.00 0.00 4.02
551 611 0.926293 CCTCTCCTCTCCTCTGTCCT 59.074 60.000 0.00 0.00 0.00 3.85
618 682 3.866582 CCCACCGCATCTCCCCTC 61.867 72.222 0.00 0.00 0.00 4.30
619 683 3.866582 CCACCGCATCTCCCCTCC 61.867 72.222 0.00 0.00 0.00 4.30
620 684 3.866582 CACCGCATCTCCCCTCCC 61.867 72.222 0.00 0.00 0.00 4.30
680 744 4.587189 GACGGGGATCGGCGAAGG 62.587 72.222 15.93 4.01 44.45 3.46
683 747 3.930012 GGGGATCGGCGAAGGAGG 61.930 72.222 15.93 0.00 0.00 4.30
707 771 3.481903 CACACGTAGCAGCGCCAG 61.482 66.667 2.29 0.00 34.88 4.85
757 836 2.338500 CCGAGTTCTTTCTTTCCTCCG 58.662 52.381 0.00 0.00 0.00 4.63
758 837 2.288886 CCGAGTTCTTTCTTTCCTCCGT 60.289 50.000 0.00 0.00 0.00 4.69
759 838 2.987821 CGAGTTCTTTCTTTCCTCCGTC 59.012 50.000 0.00 0.00 0.00 4.79
760 839 3.327626 GAGTTCTTTCTTTCCTCCGTCC 58.672 50.000 0.00 0.00 0.00 4.79
768 847 1.189524 TTTCCTCCGTCCATCCGTGT 61.190 55.000 0.00 0.00 0.00 4.49
791 870 2.276617 CGCTGCATTTACACGCGG 60.277 61.111 12.47 1.27 40.11 6.46
1596 2167 5.047306 TGTCGACTTGGAGTTTAGTGATGAT 60.047 40.000 17.92 0.00 0.00 2.45
1815 2386 2.555199 GATCGTGCCAAGTTCTGCTAT 58.445 47.619 0.00 0.00 0.00 2.97
1908 2479 1.629043 TACTCAAGTCCTTCTGGCGT 58.371 50.000 0.00 0.00 0.00 5.68
1965 2536 1.651240 CCGTCGTGTCCTATGTCGGT 61.651 60.000 0.00 0.00 40.58 4.69
2952 3523 1.277557 GTGGTGAGAGGCATGAGAGTT 59.722 52.381 0.00 0.00 0.00 3.01
3048 3619 4.163268 TCTGGCCAAGTAAGTACATGCATA 59.837 41.667 7.01 0.00 0.00 3.14
3049 3620 4.849518 TGGCCAAGTAAGTACATGCATAA 58.150 39.130 0.61 0.00 0.00 1.90
3079 3654 7.934855 AAGAGTTGATGCTAACTTGAATGAT 57.065 32.000 0.00 0.00 40.78 2.45
3080 3655 7.317842 AGAGTTGATGCTAACTTGAATGATG 57.682 36.000 0.00 0.00 40.78 3.07
3318 3893 4.439289 GGTGACAGAGGCATTAATTTGAGC 60.439 45.833 0.00 0.00 0.00 4.26
3443 4018 8.475639 TGGAAGTGATCTATTTAAGGTCTGTAC 58.524 37.037 0.00 0.00 36.19 2.90
3454 4029 0.743345 GGTCTGTACCGATGTTGCCC 60.743 60.000 0.00 0.00 35.62 5.36
3456 4031 0.981183 TCTGTACCGATGTTGCCCTT 59.019 50.000 0.00 0.00 0.00 3.95
3494 4072 5.888105 AGATGCTTCTGTTTCATAACATGC 58.112 37.500 0.48 0.00 43.02 4.06
3497 4075 4.463539 TGCTTCTGTTTCATAACATGCCAT 59.536 37.500 0.00 0.00 43.02 4.40
3499 4077 5.581126 TTCTGTTTCATAACATGCCATCC 57.419 39.130 0.00 0.00 43.02 3.51
3631 4209 8.076178 ACATTTTTCACACAATCTAAGCACTAC 58.924 33.333 0.00 0.00 0.00 2.73
3632 4210 7.561021 TTTTTCACACAATCTAAGCACTACA 57.439 32.000 0.00 0.00 0.00 2.74
3633 4211 7.744087 TTTTCACACAATCTAAGCACTACAT 57.256 32.000 0.00 0.00 0.00 2.29
3702 4282 9.023962 TCAGCCTATTAAGTTGTTCAATTTGAT 57.976 29.630 0.00 4.17 0.00 2.57
3773 4353 6.818644 TGCATGGAAGTTTCACTATCTTCTAC 59.181 38.462 0.00 0.00 38.02 2.59
3774 4354 7.044798 GCATGGAAGTTTCACTATCTTCTACT 58.955 38.462 0.00 0.00 38.02 2.57
3775 4355 7.223777 GCATGGAAGTTTCACTATCTTCTACTC 59.776 40.741 0.00 0.00 38.02 2.59
3776 4356 7.171630 TGGAAGTTTCACTATCTTCTACTCC 57.828 40.000 0.00 0.00 38.02 3.85
3777 4357 6.154706 TGGAAGTTTCACTATCTTCTACTCCC 59.845 42.308 0.00 0.00 38.02 4.30
3778 4358 6.381707 GGAAGTTTCACTATCTTCTACTCCCT 59.618 42.308 0.00 0.00 38.02 4.20
3779 4359 7.412853 AAGTTTCACTATCTTCTACTCCCTC 57.587 40.000 0.00 0.00 0.00 4.30
3780 4360 6.737608 AGTTTCACTATCTTCTACTCCCTCT 58.262 40.000 0.00 0.00 0.00 3.69
3781 4361 6.605594 AGTTTCACTATCTTCTACTCCCTCTG 59.394 42.308 0.00 0.00 0.00 3.35
3782 4362 5.718801 TCACTATCTTCTACTCCCTCTGT 57.281 43.478 0.00 0.00 0.00 3.41
3783 4363 5.686753 TCACTATCTTCTACTCCCTCTGTC 58.313 45.833 0.00 0.00 0.00 3.51
3784 4364 4.825085 CACTATCTTCTACTCCCTCTGTCC 59.175 50.000 0.00 0.00 0.00 4.02
3785 4365 2.830651 TCTTCTACTCCCTCTGTCCC 57.169 55.000 0.00 0.00 0.00 4.46
3786 4366 2.000803 TCTTCTACTCCCTCTGTCCCA 58.999 52.381 0.00 0.00 0.00 4.37
3787 4367 2.587777 TCTTCTACTCCCTCTGTCCCAT 59.412 50.000 0.00 0.00 0.00 4.00
3788 4368 3.792114 TCTTCTACTCCCTCTGTCCCATA 59.208 47.826 0.00 0.00 0.00 2.74
3789 4369 4.232122 TCTTCTACTCCCTCTGTCCCATAA 59.768 45.833 0.00 0.00 0.00 1.90
3790 4370 4.834406 TCTACTCCCTCTGTCCCATAAT 57.166 45.455 0.00 0.00 0.00 1.28
3791 4371 5.942977 TCTACTCCCTCTGTCCCATAATA 57.057 43.478 0.00 0.00 0.00 0.98
3792 4372 6.485388 TCTACTCCCTCTGTCCCATAATAT 57.515 41.667 0.00 0.00 0.00 1.28
3793 4373 7.599353 TCTACTCCCTCTGTCCCATAATATA 57.401 40.000 0.00 0.00 0.00 0.86
3794 4374 8.008104 TCTACTCCCTCTGTCCCATAATATAA 57.992 38.462 0.00 0.00 0.00 0.98
3795 4375 8.116669 TCTACTCCCTCTGTCCCATAATATAAG 58.883 40.741 0.00 0.00 0.00 1.73
3796 4376 6.875469 ACTCCCTCTGTCCCATAATATAAGA 58.125 40.000 0.00 0.00 0.00 2.10
3797 4377 7.313731 ACTCCCTCTGTCCCATAATATAAGAA 58.686 38.462 0.00 0.00 0.00 2.52
3798 4378 7.235812 ACTCCCTCTGTCCCATAATATAAGAAC 59.764 40.741 0.00 0.00 0.00 3.01
3799 4379 6.210784 TCCCTCTGTCCCATAATATAAGAACG 59.789 42.308 0.00 0.00 0.00 3.95
3800 4380 6.014499 CCCTCTGTCCCATAATATAAGAACGT 60.014 42.308 0.00 0.00 0.00 3.99
3801 4381 7.442656 CCTCTGTCCCATAATATAAGAACGTT 58.557 38.462 0.00 0.00 0.00 3.99
3802 4382 7.931948 CCTCTGTCCCATAATATAAGAACGTTT 59.068 37.037 0.46 0.00 0.00 3.60
3803 4383 9.326413 CTCTGTCCCATAATATAAGAACGTTTT 57.674 33.333 0.46 0.00 0.00 2.43
3804 4384 9.675464 TCTGTCCCATAATATAAGAACGTTTTT 57.325 29.630 9.22 9.22 0.00 1.94
3805 4385 9.716507 CTGTCCCATAATATAAGAACGTTTTTG 57.283 33.333 13.87 0.00 0.00 2.44
3806 4386 9.451002 TGTCCCATAATATAAGAACGTTTTTGA 57.549 29.630 13.87 2.81 0.00 2.69
3807 4387 9.712359 GTCCCATAATATAAGAACGTTTTTGAC 57.288 33.333 13.87 5.89 0.00 3.18
3808 4388 9.451002 TCCCATAATATAAGAACGTTTTTGACA 57.549 29.630 13.87 0.01 0.00 3.58
3809 4389 9.498307 CCCATAATATAAGAACGTTTTTGACAC 57.502 33.333 13.87 0.00 0.00 3.67
3815 4395 7.781548 ATAAGAACGTTTTTGACACTACACT 57.218 32.000 13.87 0.00 0.00 3.55
3816 4396 8.876275 ATAAGAACGTTTTTGACACTACACTA 57.124 30.769 13.87 0.00 0.00 2.74
3817 4397 7.599630 AAGAACGTTTTTGACACTACACTAA 57.400 32.000 0.46 0.00 0.00 2.24
3818 4398 7.781548 AGAACGTTTTTGACACTACACTAAT 57.218 32.000 0.46 0.00 0.00 1.73
3819 4399 7.627340 AGAACGTTTTTGACACTACACTAATG 58.373 34.615 0.46 0.00 0.00 1.90
3820 4400 6.913873 ACGTTTTTGACACTACACTAATGT 57.086 33.333 0.00 0.00 43.30 2.71
3821 4401 8.422973 AACGTTTTTGACACTACACTAATGTA 57.577 30.769 0.00 0.00 40.48 2.29
3822 4402 8.422973 ACGTTTTTGACACTACACTAATGTAA 57.577 30.769 0.00 0.00 40.84 2.41
3823 4403 8.881743 ACGTTTTTGACACTACACTAATGTAAA 58.118 29.630 0.00 0.00 40.84 2.01
3824 4404 9.705471 CGTTTTTGACACTACACTAATGTAAAA 57.295 29.630 0.00 0.00 40.84 1.52
3847 4427 7.486802 AAAACGTTCTTATATTATGGGACGG 57.513 36.000 0.00 1.76 0.00 4.79
3848 4428 6.409524 AACGTTCTTATATTATGGGACGGA 57.590 37.500 0.00 0.00 0.00 4.69
3849 4429 6.022163 ACGTTCTTATATTATGGGACGGAG 57.978 41.667 13.18 0.00 0.00 4.63
3850 4430 5.047519 ACGTTCTTATATTATGGGACGGAGG 60.048 44.000 13.18 0.00 0.00 4.30
3851 4431 5.623824 CGTTCTTATATTATGGGACGGAGGG 60.624 48.000 0.00 0.00 0.00 4.30
3852 4432 5.279562 TCTTATATTATGGGACGGAGGGA 57.720 43.478 0.00 0.00 0.00 4.20
3853 4433 5.269991 TCTTATATTATGGGACGGAGGGAG 58.730 45.833 0.00 0.00 0.00 4.30
3854 4434 3.562108 ATATTATGGGACGGAGGGAGT 57.438 47.619 0.00 0.00 0.00 3.85
3855 4435 4.687262 ATATTATGGGACGGAGGGAGTA 57.313 45.455 0.00 0.00 0.00 2.59
3872 4452 9.310449 GGAGGGAGTATACAATACTTCTCATTA 57.690 37.037 20.40 0.00 33.71 1.90
3894 4474 7.931015 TTAGACTGTTCATAGGATAATGGGT 57.069 36.000 0.00 0.00 0.00 4.51
3919 4500 5.632347 CCTTGATCACTCATTTGTGCTTTTC 59.368 40.000 0.00 0.00 37.81 2.29
3932 4513 4.484236 TGTGCTTTTCTTTTATCATGGCG 58.516 39.130 0.00 0.00 0.00 5.69
3950 4531 1.017387 CGCAGGTTCTTAAGGATGGC 58.983 55.000 1.85 0.00 0.00 4.40
4037 4618 6.830324 TGGTTTCTGCTCATAATGAAGCTATT 59.170 34.615 0.00 0.00 0.00 1.73
4229 4810 4.678287 CGTAAGAAGAAGCGTACTGTTCAA 59.322 41.667 6.79 0.00 43.02 2.69
4562 5143 2.479837 CTAAGGTGTGTGTTTCGAGCA 58.520 47.619 0.00 0.00 0.00 4.26
4610 5191 1.409064 TCTGGACGGATTCTGAATCGG 59.591 52.381 26.69 26.69 42.13 4.18
4613 5194 1.538419 GGACGGATTCTGAATCGGGTC 60.538 57.143 29.60 28.50 41.11 4.46
4619 5200 3.375299 GGATTCTGAATCGGGTCAGTTTG 59.625 47.826 20.72 0.00 44.56 2.93
4643 5224 5.048852 GGATCATGCTCTTGCTCCTAATTTC 60.049 44.000 0.00 0.00 40.48 2.17
4646 5227 3.012518 TGCTCTTGCTCCTAATTTCTGC 58.987 45.455 0.00 0.00 40.48 4.26
4648 5229 3.312146 GCTCTTGCTCCTAATTTCTGCTC 59.688 47.826 0.00 0.00 36.03 4.26
4976 5567 5.294306 TCTTCAATGGAGATCGTAATGCAAC 59.706 40.000 0.00 0.00 0.00 4.17
5147 5751 7.108847 AGTAAGCTCATTCTTAAAGCATGAGT 58.891 34.615 17.02 5.24 44.34 3.41
5181 5793 6.996509 AGCTTGATGATTTTGTGTACCAAAT 58.003 32.000 9.41 3.27 42.45 2.32
5303 5918 3.322254 TCTTGAGTGTTCAGAAGTCTCCC 59.678 47.826 10.34 0.00 34.15 4.30
5417 6032 0.316841 TTGATTGTTTTGCTCGGCCC 59.683 50.000 0.00 0.00 0.00 5.80
5466 6081 1.986575 GCTCTGCCTGCGAATGGAAC 61.987 60.000 0.00 0.00 0.00 3.62
5563 6178 5.611128 ATGTCTTATCTGCTGTCTCACAT 57.389 39.130 0.00 0.00 0.00 3.21
5572 6187 1.404181 GCTGTCTCACATGCCGTTCTA 60.404 52.381 0.00 0.00 0.00 2.10
5581 6196 4.082300 TCACATGCCGTTCTATTGCATTTT 60.082 37.500 0.00 0.00 42.79 1.82
5582 6197 5.124617 TCACATGCCGTTCTATTGCATTTTA 59.875 36.000 0.00 0.00 42.79 1.52
5709 6324 2.821969 CCAATTGATAGGTATGGCTGGC 59.178 50.000 7.12 0.00 0.00 4.85
5718 6333 0.967380 GTATGGCTGGCCTTGCTGTT 60.967 55.000 18.08 8.21 36.94 3.16
5766 6381 4.443457 CGGATGTCAAGGTGGATATTGAGT 60.443 45.833 0.00 0.00 36.16 3.41
5916 6531 7.544622 ACATTGAATTGATTGATCTCAAGGTG 58.455 34.615 7.76 1.28 38.97 4.00
5926 6541 6.672266 TTGATCTCAAGGTGAACTTAGTCT 57.328 37.500 0.00 0.00 37.29 3.24
5932 6547 3.851976 AGGTGAACTTAGTCTGTAGCG 57.148 47.619 0.00 0.00 0.00 4.26
5949 6567 9.459640 GTCTGTAGCGATTTATTTGTGACTATA 57.540 33.333 0.00 0.00 0.00 1.31
5962 6580 7.977789 TTTGTGACTATACATTTGCTCTTCA 57.022 32.000 0.00 0.00 0.00 3.02
6210 6830 5.123979 GCTCTTTTCCGTCTAATTGAACCAT 59.876 40.000 0.00 0.00 0.00 3.55
6356 6976 0.321996 ACCCTCTTGAAGAGCGTTCC 59.678 55.000 16.57 0.00 40.98 3.62
6400 7020 2.287009 GCCATGGTCGCTTTTATGCTAC 60.287 50.000 14.67 0.00 0.00 3.58
6524 7145 0.916086 TGGACAGTCCAGGTGTGTTT 59.084 50.000 19.21 0.00 42.67 2.83
6531 7152 5.901552 ACAGTCCAGGTGTGTTTTAATTTG 58.098 37.500 0.00 0.00 0.00 2.32
6537 7158 7.812669 GTCCAGGTGTGTTTTAATTTGGAATAG 59.187 37.037 0.00 0.00 35.45 1.73
6555 7176 8.006298 TGGAATAGTCAAACACTTGTTCAAAT 57.994 30.769 0.00 0.00 37.25 2.32
6562 7183 9.337396 AGTCAAACACTTGTTCAAATAGTATGA 57.663 29.630 0.00 0.00 37.25 2.15
6612 7250 5.357742 AATTTTTCCCTTGGATATGTGGC 57.642 39.130 0.00 0.00 0.00 5.01
6613 7251 3.756082 TTTTCCCTTGGATATGTGGCT 57.244 42.857 0.00 0.00 0.00 4.75
6654 7292 0.546598 GGGATAACTGGAGTGTGGGG 59.453 60.000 0.00 0.00 0.00 4.96
6717 7355 2.802247 GGCAAGAATTTTGGTGCTTGAC 59.198 45.455 0.00 0.00 39.97 3.18
6822 7460 1.076024 ACAATTGCACACAGGATCCCT 59.924 47.619 8.55 0.00 0.00 4.20
6837 7475 1.027357 TCCCTACGGTTATCGACAGC 58.973 55.000 0.00 0.00 42.43 4.40
6870 7508 0.528924 TGCTTAGCGACGGTACATGT 59.471 50.000 6.21 2.69 0.00 3.21
6876 7514 1.820519 AGCGACGGTACATGTTCCTTA 59.179 47.619 18.18 0.00 0.00 2.69
6894 7532 1.434555 TAACACGATTGGCCAAGTCG 58.565 50.000 31.23 31.23 40.91 4.18
6895 7533 0.250124 AACACGATTGGCCAAGTCGA 60.250 50.000 35.67 15.25 38.63 4.20
6899 7537 0.721718 CGATTGGCCAAGTCGACTTC 59.278 55.000 30.27 17.12 37.55 3.01
6900 7538 1.673033 CGATTGGCCAAGTCGACTTCT 60.673 52.381 30.27 5.81 37.55 2.85
6902 7540 0.319555 TTGGCCAAGTCGACTTCTCG 60.320 55.000 27.54 17.92 41.65 4.04
6904 7542 1.289380 GCCAAGTCGACTTCTCGGT 59.711 57.895 27.54 3.28 40.58 4.69
6906 7544 0.596577 CCAAGTCGACTTCTCGGTCA 59.403 55.000 27.54 0.00 40.58 4.02
6908 7546 2.352814 CCAAGTCGACTTCTCGGTCATT 60.353 50.000 27.54 0.00 40.58 2.57
6909 7547 3.119602 CCAAGTCGACTTCTCGGTCATTA 60.120 47.826 27.54 0.00 40.58 1.90
6910 7548 4.440250 CCAAGTCGACTTCTCGGTCATTAT 60.440 45.833 27.54 0.00 40.58 1.28
6912 7550 5.326200 AGTCGACTTCTCGGTCATTATTT 57.674 39.130 13.58 0.00 40.58 1.40
6913 7551 6.446781 AGTCGACTTCTCGGTCATTATTTA 57.553 37.500 13.58 0.00 40.58 1.40
6914 7552 6.496571 AGTCGACTTCTCGGTCATTATTTAG 58.503 40.000 13.58 0.00 40.58 1.85
6915 7553 6.318144 AGTCGACTTCTCGGTCATTATTTAGA 59.682 38.462 13.58 0.00 40.58 2.10
6916 7554 7.013464 AGTCGACTTCTCGGTCATTATTTAGAT 59.987 37.037 13.58 0.00 40.58 1.98
6917 7555 7.324135 GTCGACTTCTCGGTCATTATTTAGATC 59.676 40.741 8.70 0.00 40.58 2.75
6918 7556 7.012989 TCGACTTCTCGGTCATTATTTAGATCA 59.987 37.037 0.00 0.00 40.58 2.92
6920 7558 9.134734 GACTTCTCGGTCATTATTTAGATCATC 57.865 37.037 0.00 0.00 36.35 2.92
6921 7559 8.642432 ACTTCTCGGTCATTATTTAGATCATCA 58.358 33.333 0.00 0.00 0.00 3.07
6922 7560 9.650539 CTTCTCGGTCATTATTTAGATCATCAT 57.349 33.333 0.00 0.00 0.00 2.45
6923 7561 8.992835 TCTCGGTCATTATTTAGATCATCATG 57.007 34.615 0.00 0.00 0.00 3.07
6924 7562 8.806146 TCTCGGTCATTATTTAGATCATCATGA 58.194 33.333 0.00 0.00 0.00 3.07
6925 7563 8.992835 TCGGTCATTATTTAGATCATCATGAG 57.007 34.615 0.09 0.00 0.00 2.90
6935 7573 7.630242 TTAGATCATCATGAGTTTGTTTCCC 57.370 36.000 0.09 0.00 0.00 3.97
6940 7578 2.622942 TCATGAGTTTGTTTCCCACTGC 59.377 45.455 0.00 0.00 0.00 4.40
6947 7585 3.965379 TTGTTTCCCACTGCTCGTATA 57.035 42.857 0.00 0.00 0.00 1.47
6957 7595 7.450074 TCCCACTGCTCGTATATTGAATTATT 58.550 34.615 0.00 0.00 0.00 1.40
6958 7596 7.936847 TCCCACTGCTCGTATATTGAATTATTT 59.063 33.333 0.00 0.00 0.00 1.40
6959 7597 8.230486 CCCACTGCTCGTATATTGAATTATTTC 58.770 37.037 0.00 0.00 0.00 2.17
6960 7598 8.773645 CCACTGCTCGTATATTGAATTATTTCA 58.226 33.333 0.00 0.00 40.09 2.69
6961 7599 9.803130 CACTGCTCGTATATTGAATTATTTCAG 57.197 33.333 0.75 0.00 42.60 3.02
6962 7600 9.547753 ACTGCTCGTATATTGAATTATTTCAGT 57.452 29.630 0.75 1.25 42.60 3.41
6985 7623 2.362397 TCGAGTAATGCTCCTAGCCAAG 59.638 50.000 0.00 0.00 41.51 3.61
6990 7628 2.990977 TGCTCCTAGCCAAGCAGTA 58.009 52.632 8.19 0.00 43.30 2.74
6991 7629 0.537188 TGCTCCTAGCCAAGCAGTAC 59.463 55.000 8.19 0.00 43.30 2.73
6992 7630 0.537188 GCTCCTAGCCAAGCAGTACA 59.463 55.000 0.00 0.00 38.42 2.90
6993 7631 1.139853 GCTCCTAGCCAAGCAGTACAT 59.860 52.381 0.00 0.00 38.42 2.29
6994 7632 2.365617 GCTCCTAGCCAAGCAGTACATA 59.634 50.000 0.00 0.00 38.42 2.29
6997 7635 5.615289 CTCCTAGCCAAGCAGTACATATTT 58.385 41.667 0.00 0.00 0.00 1.40
7000 7638 5.590259 CCTAGCCAAGCAGTACATATTTTGT 59.410 40.000 0.00 0.00 42.62 2.83
7001 7639 5.314923 AGCCAAGCAGTACATATTTTGTG 57.685 39.130 0.00 0.00 39.48 3.33
7002 7640 5.009631 AGCCAAGCAGTACATATTTTGTGA 58.990 37.500 0.00 0.00 39.48 3.58
7004 7642 5.106157 GCCAAGCAGTACATATTTTGTGACT 60.106 40.000 0.00 0.00 39.48 3.41
7007 7645 5.479306 AGCAGTACATATTTTGTGACTCGT 58.521 37.500 0.00 0.00 39.48 4.18
7008 7646 5.577164 AGCAGTACATATTTTGTGACTCGTC 59.423 40.000 0.00 0.00 39.48 4.20
7009 7647 5.577164 GCAGTACATATTTTGTGACTCGTCT 59.423 40.000 0.00 0.00 39.48 4.18
7010 7648 6.237595 GCAGTACATATTTTGTGACTCGTCTC 60.238 42.308 0.00 0.00 39.48 3.36
7016 7694 8.304596 ACATATTTTGTGACTCGTCTCTTCTTA 58.695 33.333 0.00 0.00 37.11 2.10
7100 7779 4.346127 TCCATGTTCATGCAGCTAGTATCT 59.654 41.667 7.21 0.00 0.00 1.98
7158 7840 2.585432 AGGCTTAGCTTAAATCCCCCAA 59.415 45.455 3.59 0.00 0.00 4.12
7213 7895 0.679505 TGCCAGTCTACTCACACCAC 59.320 55.000 0.00 0.00 0.00 4.16
7422 8118 0.034670 ACTGCTTCTCCCCTTGCATC 60.035 55.000 0.00 0.00 34.79 3.91
7447 8143 5.465935 TGGGAAAATGAACAGAAATAACGC 58.534 37.500 0.00 0.00 0.00 4.84
7496 8192 2.493278 CCTTTTTGGCGTCAGATTGGAT 59.507 45.455 0.00 0.00 0.00 3.41
7521 8217 1.823610 TCATCTCTGTGACAGCTCCTG 59.176 52.381 7.93 3.12 37.52 3.86
7523 8219 0.964700 TCTCTGTGACAGCTCCTGTG 59.035 55.000 7.93 0.00 45.44 3.66
7557 8253 4.947388 TCAAAACTGTTCTGTGTTTAGCCT 59.053 37.500 0.00 0.00 35.63 4.58
7569 8265 6.939730 TCTGTGTTTAGCCTGAAAATGTGATA 59.060 34.615 0.00 0.00 0.00 2.15
7612 8308 6.566079 AGGTAGTCAAAATCATGATCCTGA 57.434 37.500 9.06 11.61 31.52 3.86
7639 8335 3.111853 TCACAGCTCTTCGTTGTCATT 57.888 42.857 0.00 0.00 34.60 2.57
7648 8344 0.601057 TCGTTGTCATTGAGCTCCGA 59.399 50.000 12.15 7.31 0.00 4.55
7739 8435 8.234546 GGATACTTCAATACGAAACAAACACAT 58.765 33.333 0.00 0.00 31.71 3.21
7808 8546 3.717400 TCCGTCAGATCTGCATCTAAC 57.283 47.619 18.36 8.73 37.25 2.34
7815 8553 3.795639 CAGATCTGCATCTAACGACTGTG 59.204 47.826 10.38 0.00 37.25 3.66
7816 8554 3.445450 AGATCTGCATCTAACGACTGTGT 59.555 43.478 0.00 0.00 37.63 3.72
7817 8555 4.640647 AGATCTGCATCTAACGACTGTGTA 59.359 41.667 0.00 0.00 37.63 2.90
7818 8556 4.983671 TCTGCATCTAACGACTGTGTAT 57.016 40.909 0.00 0.00 0.00 2.29
7819 8557 6.486993 AGATCTGCATCTAACGACTGTGTATA 59.513 38.462 0.00 0.00 37.63 1.47
7820 8558 6.445357 TCTGCATCTAACGACTGTGTATAA 57.555 37.500 0.00 0.00 0.00 0.98
7821 8559 6.859017 TCTGCATCTAACGACTGTGTATAAA 58.141 36.000 0.00 0.00 0.00 1.40
7822 8560 6.750501 TCTGCATCTAACGACTGTGTATAAAC 59.249 38.462 0.00 0.00 0.00 2.01
7823 8561 6.627243 TGCATCTAACGACTGTGTATAAACT 58.373 36.000 0.00 0.00 0.00 2.66
7824 8562 6.530181 TGCATCTAACGACTGTGTATAAACTG 59.470 38.462 0.00 0.00 0.00 3.16
7825 8563 6.530534 GCATCTAACGACTGTGTATAAACTGT 59.469 38.462 5.33 5.33 35.23 3.55
7826 8564 7.462856 GCATCTAACGACTGTGTATAAACTGTG 60.463 40.741 10.08 5.86 32.99 3.66
7827 8565 6.384224 TCTAACGACTGTGTATAAACTGTGG 58.616 40.000 10.08 11.05 35.06 4.17
7828 8566 3.323243 ACGACTGTGTATAAACTGTGGC 58.677 45.455 10.08 0.00 33.15 5.01
7829 8567 3.243941 ACGACTGTGTATAAACTGTGGCA 60.244 43.478 10.08 0.00 33.15 4.92
7830 8568 3.932710 CGACTGTGTATAAACTGTGGCAT 59.067 43.478 10.08 0.00 32.99 4.40
7831 8569 4.391830 CGACTGTGTATAAACTGTGGCATT 59.608 41.667 10.08 0.00 32.99 3.56
7832 8570 5.106712 CGACTGTGTATAAACTGTGGCATTT 60.107 40.000 10.08 0.00 32.99 2.32
7833 8571 6.567701 CGACTGTGTATAAACTGTGGCATTTT 60.568 38.462 10.08 0.00 32.99 1.82
7834 8572 7.049799 ACTGTGTATAAACTGTGGCATTTTT 57.950 32.000 4.87 0.00 31.80 1.94
7835 8573 6.922957 ACTGTGTATAAACTGTGGCATTTTTG 59.077 34.615 4.87 0.00 31.80 2.44
7836 8574 5.694006 TGTGTATAAACTGTGGCATTTTTGC 59.306 36.000 0.00 0.00 0.00 3.68
7837 8575 5.694006 GTGTATAAACTGTGGCATTTTTGCA 59.306 36.000 0.00 0.00 36.33 4.08
7838 8576 6.201806 GTGTATAAACTGTGGCATTTTTGCAA 59.798 34.615 0.00 0.00 36.33 4.08
7839 8577 6.933521 TGTATAAACTGTGGCATTTTTGCAAT 59.066 30.769 0.00 0.00 36.33 3.56
7840 8578 8.090831 TGTATAAACTGTGGCATTTTTGCAATA 58.909 29.630 0.00 0.00 36.33 1.90
7841 8579 7.976135 ATAAACTGTGGCATTTTTGCAATAA 57.024 28.000 0.00 1.50 36.33 1.40
7842 8580 5.927954 AACTGTGGCATTTTTGCAATAAG 57.072 34.783 0.00 0.00 36.33 1.73
7843 8581 5.212532 ACTGTGGCATTTTTGCAATAAGA 57.787 34.783 0.00 0.00 36.33 2.10
7844 8582 4.990426 ACTGTGGCATTTTTGCAATAAGAC 59.010 37.500 0.00 0.00 36.33 3.01
7845 8583 4.314121 TGTGGCATTTTTGCAATAAGACC 58.686 39.130 0.00 8.24 36.33 3.85
7846 8584 4.040217 TGTGGCATTTTTGCAATAAGACCT 59.960 37.500 18.19 0.00 36.33 3.85
7847 8585 4.627035 GTGGCATTTTTGCAATAAGACCTC 59.373 41.667 18.19 13.53 36.33 3.85
7848 8586 4.282957 TGGCATTTTTGCAATAAGACCTCA 59.717 37.500 18.19 7.22 36.33 3.86
7849 8587 4.627035 GGCATTTTTGCAATAAGACCTCAC 59.373 41.667 0.00 0.00 36.33 3.51
7850 8588 5.473039 GCATTTTTGCAATAAGACCTCACT 58.527 37.500 0.00 0.00 34.41 3.41
7851 8589 5.928264 GCATTTTTGCAATAAGACCTCACTT 59.072 36.000 0.00 0.00 34.41 3.16
7852 8590 6.089954 GCATTTTTGCAATAAGACCTCACTTC 59.910 38.462 0.00 0.00 34.41 3.01
7853 8591 6.959639 TTTTTGCAATAAGACCTCACTTCT 57.040 33.333 0.00 0.00 0.00 2.85
7854 8592 6.560253 TTTTGCAATAAGACCTCACTTCTC 57.440 37.500 0.00 0.00 0.00 2.87
7855 8593 5.489792 TTGCAATAAGACCTCACTTCTCT 57.510 39.130 0.00 0.00 0.00 3.10
7856 8594 4.825422 TGCAATAAGACCTCACTTCTCTG 58.175 43.478 0.00 0.00 0.00 3.35
7857 8595 3.620821 GCAATAAGACCTCACTTCTCTGC 59.379 47.826 0.00 0.00 0.00 4.26
7858 8596 4.622695 GCAATAAGACCTCACTTCTCTGCT 60.623 45.833 0.00 0.00 31.89 4.24
7859 8597 5.108517 CAATAAGACCTCACTTCTCTGCTC 58.891 45.833 0.00 0.00 0.00 4.26
7860 8598 1.555967 AGACCTCACTTCTCTGCTCC 58.444 55.000 0.00 0.00 0.00 4.70
7861 8599 1.203112 AGACCTCACTTCTCTGCTCCA 60.203 52.381 0.00 0.00 0.00 3.86
7862 8600 1.620819 GACCTCACTTCTCTGCTCCAA 59.379 52.381 0.00 0.00 0.00 3.53
7863 8601 2.235898 GACCTCACTTCTCTGCTCCAAT 59.764 50.000 0.00 0.00 0.00 3.16
7864 8602 2.641815 ACCTCACTTCTCTGCTCCAATT 59.358 45.455 0.00 0.00 0.00 2.32
7865 8603 3.073650 ACCTCACTTCTCTGCTCCAATTT 59.926 43.478 0.00 0.00 0.00 1.82
7866 8604 3.439476 CCTCACTTCTCTGCTCCAATTTG 59.561 47.826 0.00 0.00 0.00 2.32
7867 8605 2.816087 TCACTTCTCTGCTCCAATTTGC 59.184 45.455 0.00 0.00 0.00 3.68
7868 8606 2.555325 CACTTCTCTGCTCCAATTTGCA 59.445 45.455 0.00 0.00 37.63 4.08
7874 8612 2.818130 TGCTCCAATTTGCAGAAACC 57.182 45.000 0.00 0.00 34.84 3.27
7875 8613 1.344114 TGCTCCAATTTGCAGAAACCC 59.656 47.619 0.00 0.00 34.84 4.11
7876 8614 1.338105 GCTCCAATTTGCAGAAACCCC 60.338 52.381 0.00 0.00 0.00 4.95
7877 8615 0.965439 TCCAATTTGCAGAAACCCCG 59.035 50.000 0.00 0.00 0.00 5.73
7878 8616 0.678950 CCAATTTGCAGAAACCCCGT 59.321 50.000 0.00 0.00 0.00 5.28
7893 8631 2.089201 CCCCGTATCTTGAAACCAACC 58.911 52.381 0.00 0.00 0.00 3.77
7896 8634 2.158841 CCGTATCTTGAAACCAACCACG 59.841 50.000 0.00 0.00 0.00 4.94
7904 8642 2.347691 AAACCAACCACGTCCCTCCC 62.348 60.000 0.00 0.00 0.00 4.30
7905 8643 4.029809 CCAACCACGTCCCTCCCC 62.030 72.222 0.00 0.00 0.00 4.81
7906 8644 4.029809 CAACCACGTCCCTCCCCC 62.030 72.222 0.00 0.00 0.00 5.40
7924 8662 4.200838 CCCCCACATTATCAAAACAACC 57.799 45.455 0.00 0.00 0.00 3.77
7926 8664 4.224818 CCCCCACATTATCAAAACAACCAT 59.775 41.667 0.00 0.00 0.00 3.55
7929 8667 6.101332 CCCACATTATCAAAACAACCATGAG 58.899 40.000 0.00 0.00 0.00 2.90
7930 8668 6.101332 CCACATTATCAAAACAACCATGAGG 58.899 40.000 0.00 0.00 42.21 3.86
7940 8678 9.123902 TCAAAACAACCATGAGGAATATATCTG 57.876 33.333 0.00 0.00 38.69 2.90
7941 8679 8.906867 CAAAACAACCATGAGGAATATATCTGT 58.093 33.333 0.00 0.00 38.69 3.41
7942 8680 8.455903 AAACAACCATGAGGAATATATCTGTG 57.544 34.615 0.00 0.00 38.69 3.66
7943 8681 7.379059 ACAACCATGAGGAATATATCTGTGA 57.621 36.000 0.00 0.00 38.69 3.58
7944 8682 7.805163 ACAACCATGAGGAATATATCTGTGAA 58.195 34.615 0.00 0.00 38.69 3.18
7945 8683 8.274322 ACAACCATGAGGAATATATCTGTGAAA 58.726 33.333 0.00 0.00 38.69 2.69
7946 8684 8.562892 CAACCATGAGGAATATATCTGTGAAAC 58.437 37.037 0.00 0.00 38.69 2.78
7947 8685 7.227156 ACCATGAGGAATATATCTGTGAAACC 58.773 38.462 0.00 0.00 38.69 3.27
7948 8686 7.072961 ACCATGAGGAATATATCTGTGAAACCT 59.927 37.037 0.00 0.00 38.69 3.50
7953 8691 8.854614 AGGAATATATCTGTGAAACCTAATGC 57.145 34.615 0.00 0.00 34.36 3.56
7955 8693 9.066892 GGAATATATCTGTGAAACCTAATGCAA 57.933 33.333 0.00 0.00 34.36 4.08
7957 8695 9.632638 AATATATCTGTGAAACCTAATGCAAGT 57.367 29.630 0.00 0.00 34.36 3.16
8026 8787 0.591170 ACTTTGGATCGGTTGCAACG 59.409 50.000 22.67 17.36 35.14 4.10
8049 8818 1.670811 CGGGCACATTGCTAGTTTAGG 59.329 52.381 0.00 0.00 44.28 2.69
8055 8824 5.863935 GGCACATTGCTAGTTTAGGAAAAAG 59.136 40.000 0.00 0.00 44.28 2.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 9.696917 ATGCTCTTAAAACTTTGGAATTACAAG 57.303 29.630 2.74 1.15 0.00 3.16
13 14 7.440523 ACTGTAGATGCTCTTAAAACTTTGG 57.559 36.000 0.00 0.00 0.00 3.28
20 21 3.767673 ACCCGACTGTAGATGCTCTTAAA 59.232 43.478 0.00 0.00 0.00 1.52
42 43 1.138568 TTTCAGACGGGTTTGGGGTA 58.861 50.000 0.00 0.00 0.00 3.69
45 46 0.243636 GCATTTCAGACGGGTTTGGG 59.756 55.000 0.00 0.00 0.00 4.12
46 47 0.958091 TGCATTTCAGACGGGTTTGG 59.042 50.000 0.00 0.00 0.00 3.28
48 49 1.545582 CCATGCATTTCAGACGGGTTT 59.454 47.619 0.00 0.00 0.00 3.27
58 59 1.809207 CCGTCCACCCATGCATTTC 59.191 57.895 0.00 0.00 0.00 2.17
81 82 0.900182 ATCTCGTGACCAGCCAGTGA 60.900 55.000 0.00 0.00 0.00 3.41
82 83 0.036952 AATCTCGTGACCAGCCAGTG 60.037 55.000 0.00 0.00 0.00 3.66
83 84 0.687354 AAATCTCGTGACCAGCCAGT 59.313 50.000 0.00 0.00 0.00 4.00
84 85 1.466167 CAAAATCTCGTGACCAGCCAG 59.534 52.381 0.00 0.00 0.00 4.85
85 86 1.071542 TCAAAATCTCGTGACCAGCCA 59.928 47.619 0.00 0.00 0.00 4.75
86 87 1.464997 GTCAAAATCTCGTGACCAGCC 59.535 52.381 0.00 0.00 38.57 4.85
87 88 2.882742 GTCAAAATCTCGTGACCAGC 57.117 50.000 0.00 0.00 38.57 4.85
97 98 3.957288 CCGTCTGGGGTCAAAATCT 57.043 52.632 0.00 0.00 0.00 2.40
108 109 0.103208 GAGCATCTACACCCGTCTGG 59.897 60.000 0.00 0.00 41.37 3.86
109 110 3.650409 GAGCATCTACACCCGTCTG 57.350 57.895 0.00 0.00 0.00 3.51
130 131 0.093026 GCGAGTGATACGTGCACAAC 59.907 55.000 18.64 14.31 38.70 3.32
143 144 8.420945 CGTCAATTAATTTAGATAGAGCGAGTG 58.579 37.037 0.00 0.00 0.00 3.51
147 148 7.105494 TGCGTCAATTAATTTAGATAGAGCG 57.895 36.000 0.00 1.18 0.00 5.03
148 149 8.299262 TCTGCGTCAATTAATTTAGATAGAGC 57.701 34.615 0.00 1.08 0.00 4.09
166 167 3.546670 CGGAGTTGTACTAAATCTGCGTC 59.453 47.826 0.00 0.00 35.81 5.19
172 173 3.703052 TCCCTCCGGAGTTGTACTAAATC 59.297 47.826 29.25 0.00 32.86 2.17
173 174 3.716431 TCCCTCCGGAGTTGTACTAAAT 58.284 45.455 29.25 0.00 32.86 1.40
202 203 7.094549 GCCACTACCAGTGTGTTCATATAAAAA 60.095 37.037 5.65 0.00 44.50 1.94
204 205 5.878116 GCCACTACCAGTGTGTTCATATAAA 59.122 40.000 5.65 0.00 44.50 1.40
206 207 4.468153 TGCCACTACCAGTGTGTTCATATA 59.532 41.667 5.65 0.00 44.50 0.86
207 208 3.263170 TGCCACTACCAGTGTGTTCATAT 59.737 43.478 5.65 0.00 44.50 1.78
208 209 2.635427 TGCCACTACCAGTGTGTTCATA 59.365 45.455 5.65 0.00 44.50 2.15
210 211 0.833949 TGCCACTACCAGTGTGTTCA 59.166 50.000 5.65 0.00 44.50 3.18
211 212 1.202651 ACTGCCACTACCAGTGTGTTC 60.203 52.381 5.65 0.00 44.50 3.18
212 213 0.837272 ACTGCCACTACCAGTGTGTT 59.163 50.000 5.65 0.00 44.50 3.32
213 214 1.618837 CTACTGCCACTACCAGTGTGT 59.381 52.381 5.65 4.46 44.50 3.72
214 215 1.893137 TCTACTGCCACTACCAGTGTG 59.107 52.381 5.65 0.00 44.50 3.82
242 247 0.865769 GTTGCAAGAGTGTACCACCG 59.134 55.000 0.00 0.00 34.49 4.94
346 352 3.268034 AGGGTTGGCCTTAATTTTCCA 57.732 42.857 3.32 0.00 34.45 3.53
367 388 1.117142 TTTCCTCTTCGGACCGTGGT 61.117 55.000 14.79 0.00 42.97 4.16
399 430 1.743252 CACGGCAAGGAAGGAGAGC 60.743 63.158 0.00 0.00 0.00 4.09
408 439 1.647346 TTTATAGACGCACGGCAAGG 58.353 50.000 0.00 0.00 0.00 3.61
418 453 1.060713 CGAGGCGGCATTTATAGACG 58.939 55.000 13.08 0.00 0.00 4.18
503 561 4.091939 GTGGTGGTAGGGGGCGTC 62.092 72.222 0.00 0.00 0.00 5.19
545 605 3.775654 GGCGGTGGGAGAGGACAG 61.776 72.222 0.00 0.00 0.00 3.51
680 744 3.701604 CTACGTGTGGGCGCTCCTC 62.702 68.421 3.94 7.44 36.20 3.71
683 747 4.735132 TGCTACGTGTGGGCGCTC 62.735 66.667 7.64 2.47 34.88 5.03
736 801 2.077627 GGAGGAAAGAAAGAACTCGGC 58.922 52.381 0.00 0.00 0.00 5.54
757 836 4.796495 GGGGGCACACGGATGGAC 62.796 72.222 0.00 0.00 0.00 4.02
768 847 2.753849 GTAAATGCAGCGGGGGCA 60.754 61.111 0.00 0.00 46.66 5.36
791 870 2.688446 GGGGAGATTCGGTGGATTTTTC 59.312 50.000 0.00 0.00 0.00 2.29
971 1072 3.917760 GATCGGGGGCGTCAGGAG 61.918 72.222 0.00 0.00 0.00 3.69
1815 2386 1.279496 AGTGACTGCTCATGGCCTTA 58.721 50.000 3.32 0.00 40.92 2.69
1908 2479 2.745884 CCGTTCATTGCCGCCTCA 60.746 61.111 0.00 0.00 0.00 3.86
1965 2536 3.689872 AAGTAGCTGATCAGGTAGGGA 57.310 47.619 30.02 12.40 41.46 4.20
2670 3241 1.188219 AAGCAGAGAGAACGCCTCCA 61.188 55.000 2.23 0.00 42.97 3.86
2952 3523 1.596603 CAATCACACCACAGACTGCA 58.403 50.000 1.25 0.00 0.00 4.41
3079 3654 8.189119 AGCAGAAGGAAAATGTAATTAAACCA 57.811 30.769 0.00 0.00 33.67 3.67
3080 3655 7.759886 GGAGCAGAAGGAAAATGTAATTAAACC 59.240 37.037 0.00 0.00 33.67 3.27
3288 3863 2.885135 TGCCTCTGTCACCAATGATT 57.115 45.000 0.00 0.00 37.14 2.57
3318 3893 0.108424 CTCTCTGTTTCTGGCCTCCG 60.108 60.000 3.32 0.00 0.00 4.63
3348 3923 2.304180 AGCATCTTGGTACAGTGCTCTT 59.696 45.455 0.00 0.00 45.31 2.85
3443 4018 4.718940 AAATAGAAAAGGGCAACATCGG 57.281 40.909 0.00 0.00 39.74 4.18
3494 4072 1.270550 GTCCTGCAACACAAAGGATGG 59.729 52.381 0.00 0.00 41.99 3.51
3497 4075 3.788227 ATAGTCCTGCAACACAAAGGA 57.212 42.857 0.00 0.00 37.78 3.36
3499 4077 7.255242 CCCAATATATAGTCCTGCAACACAAAG 60.255 40.741 0.00 0.00 0.00 2.77
3614 4192 8.721478 CACTAAAATGTAGTGCTTAGATTGTGT 58.279 33.333 0.00 0.00 38.51 3.72
3702 4282 7.340122 TCAAGAAACATGGATAAACAACACA 57.660 32.000 0.00 0.00 0.00 3.72
3762 4342 4.141111 GGGACAGAGGGAGTAGAAGATAGT 60.141 50.000 0.00 0.00 0.00 2.12
3781 4361 9.712359 GTCAAAAACGTTCTTATATTATGGGAC 57.288 33.333 0.00 0.00 0.00 4.46
3782 4362 9.451002 TGTCAAAAACGTTCTTATATTATGGGA 57.549 29.630 0.00 0.00 0.00 4.37
3783 4363 9.498307 GTGTCAAAAACGTTCTTATATTATGGG 57.502 33.333 0.00 0.00 0.00 4.00
3789 4369 9.485206 AGTGTAGTGTCAAAAACGTTCTTATAT 57.515 29.630 0.00 0.00 0.00 0.86
3790 4370 8.876275 AGTGTAGTGTCAAAAACGTTCTTATA 57.124 30.769 0.00 0.00 0.00 0.98
3791 4371 7.781548 AGTGTAGTGTCAAAAACGTTCTTAT 57.218 32.000 0.00 0.00 0.00 1.73
3792 4372 8.700722 TTAGTGTAGTGTCAAAAACGTTCTTA 57.299 30.769 0.00 0.00 0.00 2.10
3793 4373 7.599630 TTAGTGTAGTGTCAAAAACGTTCTT 57.400 32.000 0.00 0.00 0.00 2.52
3794 4374 7.279313 ACATTAGTGTAGTGTCAAAAACGTTCT 59.721 33.333 0.00 0.00 36.63 3.01
3795 4375 7.404203 ACATTAGTGTAGTGTCAAAAACGTTC 58.596 34.615 0.00 0.00 36.63 3.95
3796 4376 7.311364 ACATTAGTGTAGTGTCAAAAACGTT 57.689 32.000 0.00 0.00 36.63 3.99
3797 4377 6.913873 ACATTAGTGTAGTGTCAAAAACGT 57.086 33.333 0.00 0.00 36.63 3.99
3798 4378 9.705471 TTTTACATTAGTGTAGTGTCAAAAACG 57.295 29.630 0.00 0.00 41.56 3.60
3822 4402 7.769970 TCCGTCCCATAATATAAGAACGTTTTT 59.230 33.333 9.22 9.22 0.00 1.94
3823 4403 7.274447 TCCGTCCCATAATATAAGAACGTTTT 58.726 34.615 0.46 0.00 0.00 2.43
3824 4404 6.819284 TCCGTCCCATAATATAAGAACGTTT 58.181 36.000 0.46 0.00 0.00 3.60
3825 4405 6.409524 TCCGTCCCATAATATAAGAACGTT 57.590 37.500 0.00 0.00 0.00 3.99
3826 4406 5.047519 CCTCCGTCCCATAATATAAGAACGT 60.048 44.000 0.00 0.00 0.00 3.99
3827 4407 5.408356 CCTCCGTCCCATAATATAAGAACG 58.592 45.833 0.00 0.00 0.00 3.95
3828 4408 5.482878 TCCCTCCGTCCCATAATATAAGAAC 59.517 44.000 0.00 0.00 0.00 3.01
3829 4409 5.657446 TCCCTCCGTCCCATAATATAAGAA 58.343 41.667 0.00 0.00 0.00 2.52
3830 4410 5.222484 ACTCCCTCCGTCCCATAATATAAGA 60.222 44.000 0.00 0.00 0.00 2.10
3831 4411 5.024118 ACTCCCTCCGTCCCATAATATAAG 58.976 45.833 0.00 0.00 0.00 1.73
3832 4412 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
3833 4413 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
3834 4414 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
3835 4415 4.687262 ATACTCCCTCCGTCCCATAATA 57.313 45.455 0.00 0.00 0.00 0.98
3836 4416 3.562108 ATACTCCCTCCGTCCCATAAT 57.438 47.619 0.00 0.00 0.00 1.28
3837 4417 3.140707 TGTATACTCCCTCCGTCCCATAA 59.859 47.826 4.17 0.00 0.00 1.90
3838 4418 2.718062 TGTATACTCCCTCCGTCCCATA 59.282 50.000 4.17 0.00 0.00 2.74
3839 4419 1.502039 TGTATACTCCCTCCGTCCCAT 59.498 52.381 4.17 0.00 0.00 4.00
3840 4420 0.928505 TGTATACTCCCTCCGTCCCA 59.071 55.000 4.17 0.00 0.00 4.37
3841 4421 2.077687 TTGTATACTCCCTCCGTCCC 57.922 55.000 4.17 0.00 0.00 4.46
3842 4422 4.405548 AGTATTGTATACTCCCTCCGTCC 58.594 47.826 4.17 0.00 0.00 4.79
3843 4423 5.769162 AGAAGTATTGTATACTCCCTCCGTC 59.231 44.000 4.17 0.00 0.00 4.79
3844 4424 5.703310 AGAAGTATTGTATACTCCCTCCGT 58.297 41.667 4.17 0.00 0.00 4.69
3845 4425 5.768662 TGAGAAGTATTGTATACTCCCTCCG 59.231 44.000 17.24 0.00 31.77 4.63
3846 4426 7.784470 ATGAGAAGTATTGTATACTCCCTCC 57.216 40.000 17.24 7.97 31.77 4.30
3872 4452 5.308237 GGACCCATTATCCTATGAACAGTCT 59.692 44.000 0.00 0.00 33.03 3.24
3894 4474 4.025040 AGCACAAATGAGTGATCAAGGA 57.975 40.909 0.00 0.00 42.05 3.36
3919 4500 2.684881 AGAACCTGCGCCATGATAAAAG 59.315 45.455 4.18 0.00 0.00 2.27
3932 4513 1.340991 TGGCCATCCTTAAGAACCTGC 60.341 52.381 0.00 0.00 0.00 4.85
3950 4531 2.734755 TTCCAGCTTGGGTGATATGG 57.265 50.000 2.86 0.00 38.32 2.74
4037 4618 1.004161 TCGCCAAAATCCATGGTCTCA 59.996 47.619 12.58 0.00 40.23 3.27
4229 4810 0.106719 CTCGCTCCCTCTCCTCTTCT 60.107 60.000 0.00 0.00 0.00 2.85
4388 4969 1.815003 GGTGCATCTCCTTCTGTTTGG 59.185 52.381 0.00 0.00 0.00 3.28
4562 5143 6.757010 GTGTAGTATCGAAGAATGACATTGGT 59.243 38.462 5.14 0.00 43.58 3.67
4610 5191 2.996631 AGAGCATGATCCAAACTGACC 58.003 47.619 7.49 0.00 0.00 4.02
4613 5194 2.753452 AGCAAGAGCATGATCCAAACTG 59.247 45.455 7.49 0.00 45.49 3.16
4643 5224 0.514691 GAAAAGGCACAGACGAGCAG 59.485 55.000 0.00 0.00 0.00 4.24
4646 5227 5.385617 CAAAATAGAAAAGGCACAGACGAG 58.614 41.667 0.00 0.00 0.00 4.18
4648 5229 3.914364 GCAAAATAGAAAAGGCACAGACG 59.086 43.478 0.00 0.00 0.00 4.18
4702 5292 5.308825 ACACTTTGATCTACAGAAACCTGG 58.691 41.667 0.00 0.00 36.01 4.45
4914 5505 4.442192 GGTTAATGTCAGCACCCACAAAAA 60.442 41.667 0.00 0.00 0.00 1.94
4915 5506 3.068873 GGTTAATGTCAGCACCCACAAAA 59.931 43.478 0.00 0.00 0.00 2.44
4916 5507 2.625790 GGTTAATGTCAGCACCCACAAA 59.374 45.455 0.00 0.00 0.00 2.83
4917 5508 2.158534 AGGTTAATGTCAGCACCCACAA 60.159 45.455 0.00 0.00 0.00 3.33
4918 5509 1.423541 AGGTTAATGTCAGCACCCACA 59.576 47.619 0.00 0.00 0.00 4.17
4919 5510 1.812571 CAGGTTAATGTCAGCACCCAC 59.187 52.381 0.00 0.00 0.00 4.61
4920 5511 1.271871 CCAGGTTAATGTCAGCACCCA 60.272 52.381 0.00 0.00 0.00 4.51
4921 5512 1.463674 CCAGGTTAATGTCAGCACCC 58.536 55.000 0.00 0.00 0.00 4.61
4922 5513 1.004277 TCCCAGGTTAATGTCAGCACC 59.996 52.381 0.00 0.00 0.00 5.01
4923 5514 2.489938 TCCCAGGTTAATGTCAGCAC 57.510 50.000 0.00 0.00 0.00 4.40
4924 5515 3.780294 AGTATCCCAGGTTAATGTCAGCA 59.220 43.478 0.00 0.00 0.00 4.41
4925 5516 4.423625 AGTATCCCAGGTTAATGTCAGC 57.576 45.455 0.00 0.00 0.00 4.26
4926 5517 8.980481 AATTAAGTATCCCAGGTTAATGTCAG 57.020 34.615 0.00 0.00 0.00 3.51
4927 5518 9.403583 GAAATTAAGTATCCCAGGTTAATGTCA 57.596 33.333 5.38 0.00 32.63 3.58
4928 5519 9.628500 AGAAATTAAGTATCCCAGGTTAATGTC 57.372 33.333 3.05 3.05 32.56 3.06
4929 5520 9.990868 AAGAAATTAAGTATCCCAGGTTAATGT 57.009 29.630 0.00 0.00 0.00 2.71
4976 5567 6.980416 ACCTACCCTTGCTATCTACTTTAG 57.020 41.667 0.00 0.00 0.00 1.85
5031 5629 5.570320 ACAGAGGTAGCCAAATTTATGTGT 58.430 37.500 0.00 0.00 0.00 3.72
5103 5707 8.560374 AGCTTACTTCACAAGTTTCAATACTTC 58.440 33.333 0.00 0.00 42.81 3.01
5181 5793 8.675705 TGTGTGATGAAGATCTTTAAAAGTCA 57.324 30.769 9.87 3.41 0.00 3.41
5303 5918 3.370978 ACTCGCTAAACAAATGGATCACG 59.629 43.478 0.00 0.00 0.00 4.35
5417 6032 1.870993 GCTGCAAGGCTGGAAAACAAG 60.871 52.381 0.00 0.00 0.00 3.16
5466 6081 3.611517 CAAACACAAAAGTCGAGAGCAG 58.388 45.455 0.00 0.00 0.00 4.24
5528 6143 7.497249 AGCAGATAAGACATACTTGGTTCAATC 59.503 37.037 0.00 0.00 39.38 2.67
5563 6178 7.503521 TCATATAAAATGCAATAGAACGGCA 57.496 32.000 0.00 0.00 42.43 5.69
5582 6197 9.678260 GATCTATTGGGTAAAGCAAGATCATAT 57.322 33.333 0.00 0.00 32.44 1.78
5659 6274 9.618890 AGCTTGTTTAGATTGAGAAGCATATTA 57.381 29.630 0.00 0.00 42.62 0.98
5709 6324 4.769688 TGAGTCCATATGTAACAGCAAGG 58.230 43.478 1.24 0.00 0.00 3.61
5718 6333 7.438160 CGAGCATTTAAGTTGAGTCCATATGTA 59.562 37.037 1.24 0.00 0.00 2.29
5916 6531 8.870879 ACAAATAAATCGCTACAGACTAAGTTC 58.129 33.333 0.00 0.00 0.00 3.01
5926 6541 9.758651 ATGTATAGTCACAAATAAATCGCTACA 57.241 29.630 0.00 0.00 30.84 2.74
6210 6830 6.730447 TGTCAATGATAATTTTCCCTCCTGA 58.270 36.000 0.00 0.00 0.00 3.86
6356 6976 4.034048 CGTACCTCCCAAATTTCTTGATCG 59.966 45.833 0.00 0.00 0.00 3.69
6531 7152 9.612620 CTATTTGAACAAGTGTTTGACTATTCC 57.387 33.333 0.00 0.00 38.56 3.01
6537 7158 9.944663 TTCATACTATTTGAACAAGTGTTTGAC 57.055 29.630 0.00 0.00 38.56 3.18
6555 7176 7.382898 TGCAGTACAAAGTGTCATTCATACTA 58.617 34.615 0.00 0.00 0.00 1.82
6559 7180 6.389830 TTTGCAGTACAAAGTGTCATTCAT 57.610 33.333 0.00 0.00 43.35 2.57
6560 7181 5.826601 TTTGCAGTACAAAGTGTCATTCA 57.173 34.783 0.00 0.00 43.35 2.57
6590 7228 5.032170 AGCCACATATCCAAGGGAAAAATT 58.968 37.500 0.00 0.00 34.34 1.82
6591 7229 4.623863 AGCCACATATCCAAGGGAAAAAT 58.376 39.130 0.00 0.00 34.34 1.82
6593 7231 3.627237 GGAGCCACATATCCAAGGGAAAA 60.627 47.826 0.00 0.00 34.34 2.29
6594 7232 2.091885 GGAGCCACATATCCAAGGGAAA 60.092 50.000 0.00 0.00 34.34 3.13
6596 7234 1.140312 GGAGCCACATATCCAAGGGA 58.860 55.000 0.00 0.00 35.54 4.20
6597 7235 0.846015 TGGAGCCACATATCCAAGGG 59.154 55.000 0.00 0.00 42.61 3.95
6602 7240 1.884579 CTGCAATGGAGCCACATATCC 59.115 52.381 0.00 0.00 36.05 2.59
6603 7241 2.579873 ACTGCAATGGAGCCACATATC 58.420 47.619 0.46 0.00 0.00 1.63
6604 7242 2.742428 ACTGCAATGGAGCCACATAT 57.258 45.000 0.46 0.00 0.00 1.78
6606 7244 1.283029 AGTACTGCAATGGAGCCACAT 59.717 47.619 0.46 0.00 0.00 3.21
6607 7245 0.692476 AGTACTGCAATGGAGCCACA 59.308 50.000 0.46 0.00 0.00 4.17
6608 7246 1.089920 CAGTACTGCAATGGAGCCAC 58.910 55.000 10.54 0.17 0.00 5.01
6609 7247 0.035152 CCAGTACTGCAATGGAGCCA 60.035 55.000 17.86 0.00 36.09 4.75
6610 7248 0.253044 TCCAGTACTGCAATGGAGCC 59.747 55.000 17.86 0.00 38.19 4.70
6611 7249 3.861341 TCCAGTACTGCAATGGAGC 57.139 52.632 17.86 0.00 38.19 4.70
6613 7251 3.370846 CCATTCTCCAGTACTGCAATGGA 60.371 47.826 32.07 20.43 40.00 3.41
6673 7311 2.252072 TTAAGCAGCGCCCTACCCAG 62.252 60.000 2.29 0.00 0.00 4.45
6732 7370 5.665459 AGATTATCTGTAGCTGTGTCAACC 58.335 41.667 0.00 0.00 0.00 3.77
6837 7475 2.799917 GCTAAGCACCATGACTAGGTCG 60.800 54.545 0.00 0.00 37.23 4.79
6870 7508 2.570415 TGGCCAATCGTGTTAAGGAA 57.430 45.000 0.61 0.00 0.00 3.36
6876 7514 0.250124 TCGACTTGGCCAATCGTGTT 60.250 50.000 31.23 12.49 37.16 3.32
6894 7532 9.134734 GATGATCTAAATAATGACCGAGAAGTC 57.865 37.037 0.00 0.00 37.28 3.01
6895 7533 8.642432 TGATGATCTAAATAATGACCGAGAAGT 58.358 33.333 0.00 0.00 0.00 3.01
6899 7537 8.992835 TCATGATGATCTAAATAATGACCGAG 57.007 34.615 0.00 0.00 0.00 4.63
6900 7538 8.588472 ACTCATGATGATCTAAATAATGACCGA 58.412 33.333 0.00 0.00 0.00 4.69
6909 7547 8.689972 GGGAAACAAACTCATGATGATCTAAAT 58.310 33.333 0.00 0.00 0.00 1.40
6910 7548 7.669304 TGGGAAACAAACTCATGATGATCTAAA 59.331 33.333 0.00 0.00 0.00 1.85
6912 7550 6.599244 GTGGGAAACAAACTCATGATGATCTA 59.401 38.462 0.00 0.00 0.00 1.98
6913 7551 5.416952 GTGGGAAACAAACTCATGATGATCT 59.583 40.000 0.00 0.00 0.00 2.75
6914 7552 5.416952 AGTGGGAAACAAACTCATGATGATC 59.583 40.000 0.00 0.00 0.00 2.92
6915 7553 5.184479 CAGTGGGAAACAAACTCATGATGAT 59.816 40.000 0.00 0.00 0.00 2.45
6916 7554 4.520111 CAGTGGGAAACAAACTCATGATGA 59.480 41.667 0.00 0.00 0.00 2.92
6917 7555 4.801891 CAGTGGGAAACAAACTCATGATG 58.198 43.478 0.00 0.00 0.00 3.07
6918 7556 3.256631 GCAGTGGGAAACAAACTCATGAT 59.743 43.478 0.00 0.00 0.00 2.45
6920 7558 2.624838 AGCAGTGGGAAACAAACTCATG 59.375 45.455 0.00 0.00 0.00 3.07
6921 7559 2.887152 GAGCAGTGGGAAACAAACTCAT 59.113 45.455 0.00 0.00 0.00 2.90
6922 7560 2.297701 GAGCAGTGGGAAACAAACTCA 58.702 47.619 0.00 0.00 0.00 3.41
6923 7561 1.264288 CGAGCAGTGGGAAACAAACTC 59.736 52.381 0.00 0.00 0.00 3.01
6924 7562 1.308998 CGAGCAGTGGGAAACAAACT 58.691 50.000 0.00 0.00 0.00 2.66
6925 7563 1.021968 ACGAGCAGTGGGAAACAAAC 58.978 50.000 0.00 0.00 0.00 2.93
6934 7572 8.773645 TGAAATAATTCAATATACGAGCAGTGG 58.226 33.333 0.00 0.00 42.47 4.00
6935 7573 9.803130 CTGAAATAATTCAATATACGAGCAGTG 57.197 33.333 0.00 0.00 44.64 3.66
6972 7610 0.537188 GTACTGCTTGGCTAGGAGCA 59.463 55.000 16.51 10.51 45.55 4.26
6985 7623 5.577164 AGACGAGTCACAAAATATGTACTGC 59.423 40.000 5.99 0.00 41.46 4.40
6990 7628 6.692486 AGAAGAGACGAGTCACAAAATATGT 58.308 36.000 5.99 0.00 45.34 2.29
6991 7629 7.588143 AAGAAGAGACGAGTCACAAAATATG 57.412 36.000 5.99 0.00 0.00 1.78
6992 7630 9.877178 AATAAGAAGAGACGAGTCACAAAATAT 57.123 29.630 5.99 0.00 0.00 1.28
6993 7631 9.706691 AAATAAGAAGAGACGAGTCACAAAATA 57.293 29.630 5.99 0.00 0.00 1.40
6994 7632 8.608844 AAATAAGAAGAGACGAGTCACAAAAT 57.391 30.769 5.99 0.00 0.00 1.82
6997 7635 9.706691 AAATAAATAAGAAGAGACGAGTCACAA 57.293 29.630 5.99 0.00 0.00 3.33
7000 7638 9.574458 CTGAAATAAATAAGAAGAGACGAGTCA 57.426 33.333 5.99 0.00 0.00 3.41
7001 7639 9.026074 CCTGAAATAAATAAGAAGAGACGAGTC 57.974 37.037 0.00 0.00 0.00 3.36
7002 7640 8.532819 ACCTGAAATAAATAAGAAGAGACGAGT 58.467 33.333 0.00 0.00 0.00 4.18
7037 7716 1.140852 CTCTGGGGTGTGTCAAACTCA 59.859 52.381 0.00 0.00 0.00 3.41
7043 7722 1.770110 AAGCCTCTGGGGTGTGTCA 60.770 57.895 0.00 0.00 43.29 3.58
7100 7779 1.982395 CGCCCTGGTGGAGTACTCA 60.982 63.158 23.91 7.95 35.39 3.41
7158 7840 1.698506 CTCCCAGCCTCTATTCTCGT 58.301 55.000 0.00 0.00 0.00 4.18
7213 7895 4.211374 GTCTGGTGTTGCTACTTACTTGTG 59.789 45.833 0.00 0.00 0.00 3.33
7335 8031 1.052124 AACTCCTCCCGTGGTGTTCA 61.052 55.000 0.00 0.00 38.87 3.18
7422 8118 6.034898 GCGTTATTTCTGTTCATTTTCCCATG 59.965 38.462 0.00 0.00 0.00 3.66
7447 8143 5.666462 CAAAATTTCCCCCTTTATTACCCG 58.334 41.667 0.00 0.00 0.00 5.28
7496 8192 2.038164 AGCTGTCACAGAGATGAAGCAA 59.962 45.455 9.70 0.00 36.25 3.91
7521 8217 9.599322 CAGAACAGTTTTGATAGATAACAACAC 57.401 33.333 0.00 0.00 0.00 3.32
7523 8219 9.599322 CACAGAACAGTTTTGATAGATAACAAC 57.401 33.333 10.73 0.00 0.00 3.32
7569 8265 6.439636 ACCTTGCATACATATATCCACTGT 57.560 37.500 0.00 0.00 0.00 3.55
7612 8308 1.478510 ACGAAGAGCTGTGATCCGATT 59.521 47.619 0.00 0.00 0.00 3.34
7639 8335 1.112113 GTTCCTACCATCGGAGCTCA 58.888 55.000 17.19 0.00 0.00 4.26
7648 8344 2.561478 ACAGTTTGCGTTCCTACCAT 57.439 45.000 0.00 0.00 0.00 3.55
7702 8398 8.664798 TCGTATTGAAGTATCCAAAACATCTTG 58.335 33.333 0.00 0.00 0.00 3.02
7766 8467 9.287373 ACGGATAGTCTTTTATAGAAGTAGAGG 57.713 37.037 3.17 0.00 33.81 3.69
7787 8488 4.250116 GTTAGATGCAGATCTGACGGAT 57.750 45.455 27.04 11.26 39.44 4.18
7808 8546 3.322369 TGCCACAGTTTATACACAGTCG 58.678 45.455 0.00 0.00 0.00 4.18
7815 8553 6.777526 TTGCAAAAATGCCACAGTTTATAC 57.222 33.333 0.00 0.00 30.35 1.47
7816 8554 9.149225 CTTATTGCAAAAATGCCACAGTTTATA 57.851 29.630 1.71 0.00 30.35 0.98
7817 8555 7.877097 TCTTATTGCAAAAATGCCACAGTTTAT 59.123 29.630 1.71 0.00 30.35 1.40
7818 8556 7.170658 GTCTTATTGCAAAAATGCCACAGTTTA 59.829 33.333 1.71 0.00 30.35 2.01
7819 8557 6.018016 GTCTTATTGCAAAAATGCCACAGTTT 60.018 34.615 1.71 0.00 33.01 2.66
7820 8558 5.466393 GTCTTATTGCAAAAATGCCACAGTT 59.534 36.000 1.71 0.00 0.00 3.16
7821 8559 4.990426 GTCTTATTGCAAAAATGCCACAGT 59.010 37.500 1.71 0.00 0.00 3.55
7822 8560 4.389687 GGTCTTATTGCAAAAATGCCACAG 59.610 41.667 1.71 0.00 0.00 3.66
7823 8561 4.040217 AGGTCTTATTGCAAAAATGCCACA 59.960 37.500 1.71 0.00 0.00 4.17
7824 8562 4.568956 AGGTCTTATTGCAAAAATGCCAC 58.431 39.130 1.71 0.00 0.00 5.01
7825 8563 4.282957 TGAGGTCTTATTGCAAAAATGCCA 59.717 37.500 1.71 0.00 0.00 4.92
7826 8564 4.627035 GTGAGGTCTTATTGCAAAAATGCC 59.373 41.667 1.71 3.87 0.00 4.40
7827 8565 5.473039 AGTGAGGTCTTATTGCAAAAATGC 58.527 37.500 1.71 0.00 0.00 3.56
7828 8566 7.373493 AGAAGTGAGGTCTTATTGCAAAAATG 58.627 34.615 1.71 0.00 0.00 2.32
7829 8567 7.449704 AGAGAAGTGAGGTCTTATTGCAAAAAT 59.550 33.333 1.71 0.00 0.00 1.82
7830 8568 6.772716 AGAGAAGTGAGGTCTTATTGCAAAAA 59.227 34.615 1.71 0.00 0.00 1.94
7831 8569 6.205464 CAGAGAAGTGAGGTCTTATTGCAAAA 59.795 38.462 1.71 0.00 0.00 2.44
7832 8570 5.702670 CAGAGAAGTGAGGTCTTATTGCAAA 59.297 40.000 1.71 0.00 0.00 3.68
7833 8571 5.240891 CAGAGAAGTGAGGTCTTATTGCAA 58.759 41.667 0.00 0.00 0.00 4.08
7834 8572 4.825422 CAGAGAAGTGAGGTCTTATTGCA 58.175 43.478 0.00 0.00 0.00 4.08
7835 8573 3.620821 GCAGAGAAGTGAGGTCTTATTGC 59.379 47.826 0.00 0.00 0.00 3.56
7836 8574 5.083533 AGCAGAGAAGTGAGGTCTTATTG 57.916 43.478 0.00 0.00 0.00 1.90
7837 8575 4.161377 GGAGCAGAGAAGTGAGGTCTTATT 59.839 45.833 0.00 0.00 0.00 1.40
7838 8576 3.704061 GGAGCAGAGAAGTGAGGTCTTAT 59.296 47.826 0.00 0.00 0.00 1.73
7839 8577 3.093057 GGAGCAGAGAAGTGAGGTCTTA 58.907 50.000 0.00 0.00 0.00 2.10
7840 8578 1.899142 GGAGCAGAGAAGTGAGGTCTT 59.101 52.381 0.00 0.00 0.00 3.01
7841 8579 1.203112 TGGAGCAGAGAAGTGAGGTCT 60.203 52.381 0.00 0.00 0.00 3.85
7842 8580 1.261480 TGGAGCAGAGAAGTGAGGTC 58.739 55.000 0.00 0.00 0.00 3.85
7843 8581 1.722034 TTGGAGCAGAGAAGTGAGGT 58.278 50.000 0.00 0.00 0.00 3.85
7844 8582 3.347077 AATTGGAGCAGAGAAGTGAGG 57.653 47.619 0.00 0.00 0.00 3.86
7845 8583 3.119919 GCAAATTGGAGCAGAGAAGTGAG 60.120 47.826 0.00 0.00 0.00 3.51
7846 8584 2.816087 GCAAATTGGAGCAGAGAAGTGA 59.184 45.455 0.00 0.00 0.00 3.41
7847 8585 2.555325 TGCAAATTGGAGCAGAGAAGTG 59.445 45.455 0.00 0.00 35.51 3.16
7848 8586 2.867624 TGCAAATTGGAGCAGAGAAGT 58.132 42.857 0.00 0.00 35.51 3.01
7855 8593 1.344114 GGGTTTCTGCAAATTGGAGCA 59.656 47.619 9.74 0.00 35.65 4.26
7856 8594 1.338105 GGGGTTTCTGCAAATTGGAGC 60.338 52.381 9.74 0.00 35.65 4.70
7857 8595 1.067635 CGGGGTTTCTGCAAATTGGAG 60.068 52.381 8.26 8.26 37.15 3.86
7858 8596 0.965439 CGGGGTTTCTGCAAATTGGA 59.035 50.000 0.00 0.00 0.00 3.53
7859 8597 0.678950 ACGGGGTTTCTGCAAATTGG 59.321 50.000 0.00 0.00 0.00 3.16
7860 8598 3.443681 AGATACGGGGTTTCTGCAAATTG 59.556 43.478 0.00 0.00 0.00 2.32
7861 8599 3.697166 AGATACGGGGTTTCTGCAAATT 58.303 40.909 0.00 0.00 0.00 1.82
7862 8600 3.366052 AGATACGGGGTTTCTGCAAAT 57.634 42.857 0.00 0.00 0.00 2.32
7863 8601 2.817258 CAAGATACGGGGTTTCTGCAAA 59.183 45.455 0.00 0.00 0.00 3.68
7864 8602 2.039216 TCAAGATACGGGGTTTCTGCAA 59.961 45.455 0.00 0.00 0.00 4.08
7865 8603 1.626321 TCAAGATACGGGGTTTCTGCA 59.374 47.619 0.00 0.00 0.00 4.41
7866 8604 2.396590 TCAAGATACGGGGTTTCTGC 57.603 50.000 0.00 0.00 0.00 4.26
7867 8605 3.439129 GGTTTCAAGATACGGGGTTTCTG 59.561 47.826 0.00 0.00 0.00 3.02
7868 8606 3.073356 TGGTTTCAAGATACGGGGTTTCT 59.927 43.478 0.00 0.00 0.00 2.52
7869 8607 3.414269 TGGTTTCAAGATACGGGGTTTC 58.586 45.455 0.00 0.00 0.00 2.78
7870 8608 3.512219 TGGTTTCAAGATACGGGGTTT 57.488 42.857 0.00 0.00 0.00 3.27
7871 8609 3.151554 GTTGGTTTCAAGATACGGGGTT 58.848 45.455 0.00 0.00 32.92 4.11
7872 8610 2.553685 GGTTGGTTTCAAGATACGGGGT 60.554 50.000 0.00 0.00 32.92 4.95
7873 8611 2.089201 GGTTGGTTTCAAGATACGGGG 58.911 52.381 0.00 0.00 32.92 5.73
7874 8612 2.486592 GTGGTTGGTTTCAAGATACGGG 59.513 50.000 0.00 0.00 32.92 5.28
7875 8613 2.158841 CGTGGTTGGTTTCAAGATACGG 59.841 50.000 0.00 0.00 34.23 4.02
7876 8614 2.803956 ACGTGGTTGGTTTCAAGATACG 59.196 45.455 0.00 0.00 38.94 3.06
7877 8615 3.187842 GGACGTGGTTGGTTTCAAGATAC 59.812 47.826 0.00 0.00 32.92 2.24
7878 8616 3.404899 GGACGTGGTTGGTTTCAAGATA 58.595 45.455 0.00 0.00 32.92 1.98
7904 8642 4.881019 TGGTTGTTTTGATAATGTGGGG 57.119 40.909 0.00 0.00 0.00 4.96
7905 8643 6.035368 TCATGGTTGTTTTGATAATGTGGG 57.965 37.500 0.00 0.00 0.00 4.61
7906 8644 6.071447 TCCTCATGGTTGTTTTGATAATGTGG 60.071 38.462 0.00 0.00 34.23 4.17
7922 8660 7.072961 AGGTTTCACAGATATATTCCTCATGGT 59.927 37.037 0.00 0.00 34.23 3.55
7923 8661 7.456725 AGGTTTCACAGATATATTCCTCATGG 58.543 38.462 0.00 0.00 0.00 3.66
7929 8667 8.621532 TGCATTAGGTTTCACAGATATATTCC 57.378 34.615 0.00 0.00 0.00 3.01
7938 8676 6.597672 TGGTATACTTGCATTAGGTTTCACAG 59.402 38.462 2.25 0.00 0.00 3.66
7940 8678 6.995511 TGGTATACTTGCATTAGGTTTCAC 57.004 37.500 2.25 0.00 0.00 3.18
7941 8679 8.301002 GTTTTGGTATACTTGCATTAGGTTTCA 58.699 33.333 2.25 0.00 0.00 2.69
7942 8680 8.520351 AGTTTTGGTATACTTGCATTAGGTTTC 58.480 33.333 2.25 0.00 0.00 2.78
7943 8681 8.417273 AGTTTTGGTATACTTGCATTAGGTTT 57.583 30.769 2.25 0.00 0.00 3.27
7944 8682 9.174166 CTAGTTTTGGTATACTTGCATTAGGTT 57.826 33.333 2.25 0.00 0.00 3.50
7945 8683 8.326529 ACTAGTTTTGGTATACTTGCATTAGGT 58.673 33.333 2.25 0.00 0.00 3.08
7946 8684 8.612619 CACTAGTTTTGGTATACTTGCATTAGG 58.387 37.037 2.25 0.00 0.00 2.69
7947 8685 9.162764 ACACTAGTTTTGGTATACTTGCATTAG 57.837 33.333 2.25 2.47 0.00 1.73
7948 8686 9.509956 AACACTAGTTTTGGTATACTTGCATTA 57.490 29.630 2.25 0.00 33.11 1.90
7950 8688 7.996098 AACACTAGTTTTGGTATACTTGCAT 57.004 32.000 2.25 0.00 33.11 3.96
7951 8689 7.811117 AAACACTAGTTTTGGTATACTTGCA 57.189 32.000 2.25 0.00 45.32 4.08
8026 8787 1.586154 AACTAGCAATGTGCCCGTGC 61.586 55.000 0.00 0.00 46.52 5.34
8032 8793 6.447162 ACTTTTTCCTAAACTAGCAATGTGC 58.553 36.000 0.00 0.00 45.46 4.57
8078 8847 6.602406 TGATAGTAGAATCTATTACCCGCTCC 59.398 42.308 0.00 0.00 31.71 4.70
8082 8851 9.848710 TCCTATGATAGTAGAATCTATTACCCG 57.151 37.037 0.00 0.00 31.71 5.28


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.