Multiple sequence alignment - TraesCS4D01G337500

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G337500 chr4D 100.000 3644 0 0 1 3644 494876060 494879703 0.000000e+00 6730.0
1 TraesCS4D01G337500 chr4D 76.735 1311 277 23 1317 2616 495979078 495980371 0.000000e+00 706.0
2 TraesCS4D01G337500 chr5A 93.939 2541 112 19 636 3158 674575738 674578254 0.000000e+00 3801.0
3 TraesCS4D01G337500 chr5A 95.738 305 8 2 3345 3644 674578654 674578958 1.520000e-133 486.0
4 TraesCS4D01G337500 chr5A 94.828 174 5 2 3158 3327 674578495 674578668 6.000000e-68 268.0
5 TraesCS4D01G337500 chr5A 95.556 135 5 1 59 192 674575604 674575738 7.930000e-52 215.0
6 TraesCS4D01G337500 chr5A 92.308 78 6 0 557 634 622220463 622220386 1.070000e-20 111.0
7 TraesCS4D01G337500 chr5A 81.250 112 21 0 523 634 496501233 496501122 1.390000e-14 91.6
8 TraesCS4D01G337500 chr4B 91.193 2691 135 38 633 3272 634980751 634983390 0.000000e+00 3563.0
9 TraesCS4D01G337500 chr4B 93.379 2175 121 12 633 2788 634461334 634459164 0.000000e+00 3197.0
10 TraesCS4D01G337500 chr4B 76.354 1311 282 23 1317 2616 635867948 635869241 0.000000e+00 678.0
11 TraesCS4D01G337500 chr4B 87.174 499 29 17 2843 3326 634459170 634458692 5.360000e-148 534.0
12 TraesCS4D01G337500 chr4B 84.028 432 62 7 209 636 67503856 67504284 3.390000e-110 409.0
13 TraesCS4D01G337500 chr4B 85.311 177 12 8 3394 3564 634458682 634458514 1.740000e-38 171.0
14 TraesCS4D01G337500 chr4B 84.021 194 10 7 1 193 634461504 634461331 2.250000e-37 167.0
15 TraesCS4D01G337500 chr4B 91.509 106 8 1 1 105 634980595 634980700 1.050000e-30 145.0
16 TraesCS4D01G337500 chr7D 85.752 1530 196 12 1123 2646 61235349 61236862 0.000000e+00 1598.0
17 TraesCS4D01G337500 chr7D 84.181 354 47 7 216 563 78251421 78251771 5.830000e-88 335.0
18 TraesCS4D01G337500 chr7A 85.055 1539 207 13 1115 2646 65163544 65165066 0.000000e+00 1546.0
19 TraesCS4D01G337500 chr2A 84.097 1528 213 16 1127 2650 1776746 1778247 0.000000e+00 1448.0
20 TraesCS4D01G337500 chr2A 83.922 1530 212 19 1127 2650 1785261 1783760 0.000000e+00 1432.0
21 TraesCS4D01G337500 chr2A 83.150 1543 223 24 1115 2648 2731853 2730339 0.000000e+00 1375.0
22 TraesCS4D01G337500 chr2B 83.948 922 133 12 1142 2057 305565 304653 0.000000e+00 869.0
23 TraesCS4D01G337500 chr2B 83.959 586 87 6 2065 2650 304402 303824 4.110000e-154 555.0
24 TraesCS4D01G337500 chr2D 85.652 460 51 6 189 636 571060704 571060248 1.530000e-128 470.0
25 TraesCS4D01G337500 chrUn 82.222 450 65 9 190 636 1747935 1748372 1.240000e-99 374.0
26 TraesCS4D01G337500 chr6D 81.153 451 78 7 191 636 461541594 461542042 4.480000e-94 355.0
27 TraesCS4D01G337500 chr6D 85.337 341 45 4 232 568 397652910 397653249 7.490000e-92 348.0
28 TraesCS4D01G337500 chr1A 81.111 450 70 9 190 636 568961672 568962109 2.690000e-91 346.0
29 TraesCS4D01G337500 chr5B 80.694 461 64 15 191 635 494066959 494066508 5.830000e-88 335.0
30 TraesCS4D01G337500 chr3A 79.148 446 80 11 192 636 692051827 692052260 2.750000e-76 296.0
31 TraesCS4D01G337500 chr5D 71.462 431 86 22 226 636 561884725 561885138 3.020000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G337500 chr4D 494876060 494879703 3643 False 6730.00 6730 100.00000 1 3644 1 chr4D.!!$F1 3643
1 TraesCS4D01G337500 chr4D 495979078 495980371 1293 False 706.00 706 76.73500 1317 2616 1 chr4D.!!$F2 1299
2 TraesCS4D01G337500 chr5A 674575604 674578958 3354 False 1192.50 3801 95.01525 59 3644 4 chr5A.!!$F1 3585
3 TraesCS4D01G337500 chr4B 634980595 634983390 2795 False 1854.00 3563 91.35100 1 3272 2 chr4B.!!$F3 3271
4 TraesCS4D01G337500 chr4B 634458514 634461504 2990 True 1017.25 3197 87.47125 1 3564 4 chr4B.!!$R1 3563
5 TraesCS4D01G337500 chr4B 635867948 635869241 1293 False 678.00 678 76.35400 1317 2616 1 chr4B.!!$F2 1299
6 TraesCS4D01G337500 chr7D 61235349 61236862 1513 False 1598.00 1598 85.75200 1123 2646 1 chr7D.!!$F1 1523
7 TraesCS4D01G337500 chr7A 65163544 65165066 1522 False 1546.00 1546 85.05500 1115 2646 1 chr7A.!!$F1 1531
8 TraesCS4D01G337500 chr2A 1776746 1778247 1501 False 1448.00 1448 84.09700 1127 2650 1 chr2A.!!$F1 1523
9 TraesCS4D01G337500 chr2A 1783760 1785261 1501 True 1432.00 1432 83.92200 1127 2650 1 chr2A.!!$R1 1523
10 TraesCS4D01G337500 chr2A 2730339 2731853 1514 True 1375.00 1375 83.15000 1115 2648 1 chr2A.!!$R2 1533
11 TraesCS4D01G337500 chr2B 303824 305565 1741 True 712.00 869 83.95350 1142 2650 2 chr2B.!!$R1 1508

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
475 478 0.029681 AGGGCACTCCTCATACCCAT 60.030 55.0 0.00 0.00 44.06 4.00 F
507 510 0.037303 ATGAATATGAGGGCTGCCGG 59.963 55.0 13.40 0.00 0.00 6.13 F
604 607 0.101939 GTCCCTACATTCGACCGGTC 59.898 60.0 25.28 25.28 0.00 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1491 1543 2.191375 CCCGCCATGATGAGCTGT 59.809 61.111 0.00 0.0 0.0 4.40 R
2533 2870 4.643387 GTGGCCAGGCACGGTCTT 62.643 66.667 15.19 0.0 0.0 3.01 R
2668 3012 0.902984 TGTGGCCGAGACATGTAGGT 60.903 55.000 0.00 0.0 0.0 3.08 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 39 6.833342 ACTTGAGCAAAAGCTAAAATGTTG 57.167 33.333 0.00 0.00 0.00 3.33
55 57 5.330455 TGTTGTTGGTTCAAATGCACTTA 57.670 34.783 0.00 0.00 0.00 2.24
57 59 5.578727 TGTTGTTGGTTCAAATGCACTTAAC 59.421 36.000 0.00 0.00 0.00 2.01
168 171 2.284995 GTCACTGCCCCCTCTCCT 60.285 66.667 0.00 0.00 0.00 3.69
181 184 2.238521 CCTCTCCTCTACCATCTCAGC 58.761 57.143 0.00 0.00 0.00 4.26
189 192 0.833287 TACCATCTCAGCCTGAAGCC 59.167 55.000 0.00 0.00 45.47 4.35
190 193 0.913451 ACCATCTCAGCCTGAAGCCT 60.913 55.000 0.00 0.00 45.47 4.58
191 194 1.126488 CCATCTCAGCCTGAAGCCTA 58.874 55.000 0.00 0.00 45.47 3.93
192 195 1.487976 CCATCTCAGCCTGAAGCCTAA 59.512 52.381 0.00 0.00 45.47 2.69
193 196 2.485124 CCATCTCAGCCTGAAGCCTAAG 60.485 54.545 0.00 0.00 45.47 2.18
194 197 1.198713 TCTCAGCCTGAAGCCTAAGG 58.801 55.000 0.00 0.00 45.47 2.69
195 198 0.179936 CTCAGCCTGAAGCCTAAGGG 59.820 60.000 0.00 0.00 45.47 3.95
212 215 4.427394 GCATCTACTGCCGGACTG 57.573 61.111 5.05 3.14 45.66 3.51
213 216 1.816537 GCATCTACTGCCGGACTGA 59.183 57.895 5.05 0.00 45.66 3.41
214 217 0.390860 GCATCTACTGCCGGACTGAT 59.609 55.000 5.05 0.00 45.66 2.90
215 218 1.604185 GCATCTACTGCCGGACTGATC 60.604 57.143 5.05 0.00 45.66 2.92
216 219 1.683385 CATCTACTGCCGGACTGATCA 59.317 52.381 5.05 0.00 0.00 2.92
217 220 1.847328 TCTACTGCCGGACTGATCAA 58.153 50.000 5.05 0.00 0.00 2.57
218 221 2.176045 TCTACTGCCGGACTGATCAAA 58.824 47.619 5.05 0.00 0.00 2.69
219 222 2.766263 TCTACTGCCGGACTGATCAAAT 59.234 45.455 5.05 0.00 0.00 2.32
220 223 2.496899 ACTGCCGGACTGATCAAATT 57.503 45.000 5.05 0.00 0.00 1.82
221 224 2.795329 ACTGCCGGACTGATCAAATTT 58.205 42.857 5.05 0.00 0.00 1.82
222 225 2.489329 ACTGCCGGACTGATCAAATTTG 59.511 45.455 5.05 12.15 0.00 2.32
223 226 1.818060 TGCCGGACTGATCAAATTTGG 59.182 47.619 17.90 4.61 0.00 3.28
224 227 1.469767 GCCGGACTGATCAAATTTGGC 60.470 52.381 17.90 10.94 0.00 4.52
225 228 1.134946 CCGGACTGATCAAATTTGGCC 59.865 52.381 17.90 10.38 0.00 5.36
226 229 1.134946 CGGACTGATCAAATTTGGCCC 59.865 52.381 17.90 8.10 0.00 5.80
227 230 1.482182 GGACTGATCAAATTTGGCCCC 59.518 52.381 17.90 7.54 0.00 5.80
228 231 2.460669 GACTGATCAAATTTGGCCCCT 58.539 47.619 17.90 0.00 0.00 4.79
229 232 2.428530 GACTGATCAAATTTGGCCCCTC 59.571 50.000 17.90 8.10 0.00 4.30
230 233 2.043526 ACTGATCAAATTTGGCCCCTCT 59.956 45.455 17.90 0.00 0.00 3.69
231 234 3.269381 ACTGATCAAATTTGGCCCCTCTA 59.731 43.478 17.90 0.00 0.00 2.43
232 235 4.264352 ACTGATCAAATTTGGCCCCTCTAA 60.264 41.667 17.90 0.00 0.00 2.10
233 236 4.023291 TGATCAAATTTGGCCCCTCTAAC 58.977 43.478 17.90 0.00 0.00 2.34
234 237 2.442413 TCAAATTTGGCCCCTCTAACG 58.558 47.619 17.90 0.00 0.00 3.18
235 238 2.167662 CAAATTTGGCCCCTCTAACGT 58.832 47.619 10.49 0.00 0.00 3.99
236 239 2.124277 AATTTGGCCCCTCTAACGTC 57.876 50.000 0.00 0.00 0.00 4.34
237 240 0.255033 ATTTGGCCCCTCTAACGTCC 59.745 55.000 0.00 0.00 0.00 4.79
238 241 2.175035 TTTGGCCCCTCTAACGTCCG 62.175 60.000 0.00 0.00 0.00 4.79
239 242 4.525949 GGCCCCTCTAACGTCCGC 62.526 72.222 0.00 0.00 0.00 5.54
240 243 4.867599 GCCCCTCTAACGTCCGCG 62.868 72.222 0.00 0.00 44.93 6.46
241 244 4.203076 CCCCTCTAACGTCCGCGG 62.203 72.222 22.12 22.12 43.45 6.46
242 245 3.136123 CCCTCTAACGTCCGCGGA 61.136 66.667 27.28 27.28 43.45 5.54
243 246 2.101770 CCTCTAACGTCCGCGGAC 59.898 66.667 41.75 41.75 43.45 4.79
273 276 4.752879 CGTCCGGGCGTGTCCATT 62.753 66.667 22.93 0.00 36.21 3.16
274 277 2.359478 GTCCGGGCGTGTCCATTT 60.359 61.111 0.00 0.00 36.21 2.32
275 278 1.969589 GTCCGGGCGTGTCCATTTT 60.970 57.895 0.00 0.00 36.21 1.82
276 279 1.969064 TCCGGGCGTGTCCATTTTG 60.969 57.895 0.00 0.00 36.21 2.44
277 280 1.969064 CCGGGCGTGTCCATTTTGA 60.969 57.895 0.00 0.00 36.21 2.69
278 281 1.209127 CGGGCGTGTCCATTTTGAC 59.791 57.895 0.00 0.00 36.21 3.18
279 282 1.234615 CGGGCGTGTCCATTTTGACT 61.235 55.000 0.00 0.00 36.21 3.41
280 283 0.521735 GGGCGTGTCCATTTTGACTC 59.478 55.000 0.00 0.00 36.21 3.36
281 284 0.521735 GGCGTGTCCATTTTGACTCC 59.478 55.000 0.00 0.00 36.21 3.85
282 285 0.521735 GCGTGTCCATTTTGACTCCC 59.478 55.000 0.00 0.00 36.21 4.30
283 286 1.882352 GCGTGTCCATTTTGACTCCCT 60.882 52.381 0.00 0.00 36.21 4.20
284 287 2.614481 GCGTGTCCATTTTGACTCCCTA 60.614 50.000 0.00 0.00 36.21 3.53
285 288 3.873910 CGTGTCCATTTTGACTCCCTAT 58.126 45.455 0.00 0.00 36.21 2.57
286 289 4.261801 CGTGTCCATTTTGACTCCCTATT 58.738 43.478 0.00 0.00 36.21 1.73
287 290 4.700213 CGTGTCCATTTTGACTCCCTATTT 59.300 41.667 0.00 0.00 36.21 1.40
288 291 5.183140 CGTGTCCATTTTGACTCCCTATTTT 59.817 40.000 0.00 0.00 36.21 1.82
289 292 6.294508 CGTGTCCATTTTGACTCCCTATTTTT 60.295 38.462 0.00 0.00 36.21 1.94
290 293 7.090808 GTGTCCATTTTGACTCCCTATTTTTC 58.909 38.462 0.00 0.00 36.21 2.29
291 294 6.072175 TGTCCATTTTGACTCCCTATTTTTCG 60.072 38.462 0.00 0.00 36.21 3.46
292 295 6.007703 TCCATTTTGACTCCCTATTTTTCGT 58.992 36.000 0.00 0.00 0.00 3.85
293 296 6.492087 TCCATTTTGACTCCCTATTTTTCGTT 59.508 34.615 0.00 0.00 0.00 3.85
294 297 6.806739 CCATTTTGACTCCCTATTTTTCGTTC 59.193 38.462 0.00 0.00 0.00 3.95
295 298 6.945938 TTTTGACTCCCTATTTTTCGTTCA 57.054 33.333 0.00 0.00 0.00 3.18
296 299 5.934935 TTGACTCCCTATTTTTCGTTCAC 57.065 39.130 0.00 0.00 0.00 3.18
297 300 3.991773 TGACTCCCTATTTTTCGTTCACG 59.008 43.478 0.00 0.00 41.45 4.35
298 301 2.740447 ACTCCCTATTTTTCGTTCACGC 59.260 45.455 0.00 0.00 39.60 5.34
299 302 2.739913 CTCCCTATTTTTCGTTCACGCA 59.260 45.455 0.00 0.00 39.60 5.24
300 303 2.739913 TCCCTATTTTTCGTTCACGCAG 59.260 45.455 0.00 0.00 39.60 5.18
301 304 2.505866 CCTATTTTTCGTTCACGCAGC 58.494 47.619 0.00 0.00 39.60 5.25
302 305 2.505866 CTATTTTTCGTTCACGCAGCC 58.494 47.619 0.00 0.00 39.60 4.85
303 306 0.665835 ATTTTTCGTTCACGCAGCCA 59.334 45.000 0.00 0.00 39.60 4.75
304 307 0.665835 TTTTTCGTTCACGCAGCCAT 59.334 45.000 0.00 0.00 39.60 4.40
305 308 0.040514 TTTTCGTTCACGCAGCCATG 60.041 50.000 0.00 0.00 39.60 3.66
306 309 1.163420 TTTCGTTCACGCAGCCATGT 61.163 50.000 0.00 0.00 39.60 3.21
307 310 1.565156 TTCGTTCACGCAGCCATGTC 61.565 55.000 0.00 0.00 39.60 3.06
308 311 2.870372 GTTCACGCAGCCATGTCC 59.130 61.111 0.00 0.00 0.00 4.02
309 312 2.359850 TTCACGCAGCCATGTCCC 60.360 61.111 0.00 0.00 0.00 4.46
310 313 2.894257 TTCACGCAGCCATGTCCCT 61.894 57.895 0.00 0.00 0.00 4.20
311 314 2.803155 TTCACGCAGCCATGTCCCTC 62.803 60.000 0.00 0.00 0.00 4.30
312 315 3.321648 ACGCAGCCATGTCCCTCA 61.322 61.111 0.00 0.00 0.00 3.86
313 316 2.821366 CGCAGCCATGTCCCTCAC 60.821 66.667 0.00 0.00 0.00 3.51
314 317 2.673523 GCAGCCATGTCCCTCACT 59.326 61.111 0.00 0.00 0.00 3.41
315 318 1.001641 GCAGCCATGTCCCTCACTT 60.002 57.895 0.00 0.00 0.00 3.16
316 319 0.610232 GCAGCCATGTCCCTCACTTT 60.610 55.000 0.00 0.00 0.00 2.66
317 320 1.915141 CAGCCATGTCCCTCACTTTT 58.085 50.000 0.00 0.00 0.00 2.27
318 321 1.815003 CAGCCATGTCCCTCACTTTTC 59.185 52.381 0.00 0.00 0.00 2.29
319 322 1.707427 AGCCATGTCCCTCACTTTTCT 59.293 47.619 0.00 0.00 0.00 2.52
320 323 2.087646 GCCATGTCCCTCACTTTTCTC 58.912 52.381 0.00 0.00 0.00 2.87
321 324 2.350522 CCATGTCCCTCACTTTTCTCG 58.649 52.381 0.00 0.00 0.00 4.04
322 325 2.289694 CCATGTCCCTCACTTTTCTCGT 60.290 50.000 0.00 0.00 0.00 4.18
323 326 3.403038 CATGTCCCTCACTTTTCTCGTT 58.597 45.455 0.00 0.00 0.00 3.85
324 327 4.562757 CCATGTCCCTCACTTTTCTCGTTA 60.563 45.833 0.00 0.00 0.00 3.18
325 328 4.884668 TGTCCCTCACTTTTCTCGTTAT 57.115 40.909 0.00 0.00 0.00 1.89
326 329 5.988310 TGTCCCTCACTTTTCTCGTTATA 57.012 39.130 0.00 0.00 0.00 0.98
327 330 6.540438 TGTCCCTCACTTTTCTCGTTATAT 57.460 37.500 0.00 0.00 0.00 0.86
328 331 6.338146 TGTCCCTCACTTTTCTCGTTATATG 58.662 40.000 0.00 0.00 0.00 1.78
329 332 6.070995 TGTCCCTCACTTTTCTCGTTATATGT 60.071 38.462 0.00 0.00 0.00 2.29
330 333 6.476053 GTCCCTCACTTTTCTCGTTATATGTC 59.524 42.308 0.00 0.00 0.00 3.06
331 334 5.753921 CCCTCACTTTTCTCGTTATATGTCC 59.246 44.000 0.00 0.00 0.00 4.02
332 335 5.459107 CCTCACTTTTCTCGTTATATGTCCG 59.541 44.000 0.00 0.00 0.00 4.79
333 336 5.345702 TCACTTTTCTCGTTATATGTCCGG 58.654 41.667 0.00 0.00 0.00 5.14
334 337 5.105635 TCACTTTTCTCGTTATATGTCCGGT 60.106 40.000 0.00 0.00 0.00 5.28
335 338 5.231568 CACTTTTCTCGTTATATGTCCGGTC 59.768 44.000 0.00 0.00 0.00 4.79
336 339 4.987408 TTTCTCGTTATATGTCCGGTCA 57.013 40.909 3.25 3.25 0.00 4.02
337 340 3.976793 TCTCGTTATATGTCCGGTCAC 57.023 47.619 2.72 0.00 0.00 3.67
338 341 3.281158 TCTCGTTATATGTCCGGTCACA 58.719 45.455 2.72 0.00 0.00 3.58
339 342 3.887110 TCTCGTTATATGTCCGGTCACAT 59.113 43.478 12.89 12.89 40.28 3.21
340 343 3.972403 TCGTTATATGTCCGGTCACATG 58.028 45.455 16.88 2.47 37.57 3.21
341 344 2.475111 CGTTATATGTCCGGTCACATGC 59.525 50.000 16.88 3.38 37.57 4.06
342 345 3.462982 GTTATATGTCCGGTCACATGCA 58.537 45.455 16.88 0.00 37.57 3.96
343 346 2.936919 ATATGTCCGGTCACATGCAT 57.063 45.000 16.88 0.00 37.57 3.96
344 347 1.952193 TATGTCCGGTCACATGCATG 58.048 50.000 25.09 25.09 37.57 4.06
345 348 0.035152 ATGTCCGGTCACATGCATGT 60.035 50.000 26.61 26.61 42.84 3.21
356 359 3.861276 ACATGCATGTGATTTGTGGAG 57.139 42.857 30.92 0.61 40.03 3.86
357 360 3.423749 ACATGCATGTGATTTGTGGAGA 58.576 40.909 30.92 0.00 40.03 3.71
358 361 3.827876 ACATGCATGTGATTTGTGGAGAA 59.172 39.130 30.92 0.00 40.03 2.87
359 362 4.082408 ACATGCATGTGATTTGTGGAGAAG 60.082 41.667 30.92 0.00 40.03 2.85
360 363 3.753815 TGCATGTGATTTGTGGAGAAGA 58.246 40.909 0.00 0.00 0.00 2.87
361 364 4.143543 TGCATGTGATTTGTGGAGAAGAA 58.856 39.130 0.00 0.00 0.00 2.52
362 365 4.583907 TGCATGTGATTTGTGGAGAAGAAA 59.416 37.500 0.00 0.00 0.00 2.52
363 366 5.068855 TGCATGTGATTTGTGGAGAAGAAAA 59.931 36.000 0.00 0.00 0.00 2.29
364 367 5.632347 GCATGTGATTTGTGGAGAAGAAAAG 59.368 40.000 0.00 0.00 0.00 2.27
365 368 6.515531 GCATGTGATTTGTGGAGAAGAAAAGA 60.516 38.462 0.00 0.00 0.00 2.52
366 369 6.624352 TGTGATTTGTGGAGAAGAAAAGAG 57.376 37.500 0.00 0.00 0.00 2.85
367 370 6.356556 TGTGATTTGTGGAGAAGAAAAGAGA 58.643 36.000 0.00 0.00 0.00 3.10
368 371 6.828273 TGTGATTTGTGGAGAAGAAAAGAGAA 59.172 34.615 0.00 0.00 0.00 2.87
369 372 7.339212 TGTGATTTGTGGAGAAGAAAAGAGAAA 59.661 33.333 0.00 0.00 0.00 2.52
370 373 8.355913 GTGATTTGTGGAGAAGAAAAGAGAAAT 58.644 33.333 0.00 0.00 0.00 2.17
371 374 8.355169 TGATTTGTGGAGAAGAAAAGAGAAATG 58.645 33.333 0.00 0.00 0.00 2.32
372 375 7.880160 TTTGTGGAGAAGAAAAGAGAAATGA 57.120 32.000 0.00 0.00 0.00 2.57
373 376 7.880160 TTGTGGAGAAGAAAAGAGAAATGAA 57.120 32.000 0.00 0.00 0.00 2.57
374 377 7.880160 TGTGGAGAAGAAAAGAGAAATGAAA 57.120 32.000 0.00 0.00 0.00 2.69
375 378 8.292444 TGTGGAGAAGAAAAGAGAAATGAAAA 57.708 30.769 0.00 0.00 0.00 2.29
376 379 8.917088 TGTGGAGAAGAAAAGAGAAATGAAAAT 58.083 29.630 0.00 0.00 0.00 1.82
410 413 1.247567 AAAAAGATGCTCGGTGGTGG 58.752 50.000 0.00 0.00 0.00 4.61
411 414 0.400213 AAAAGATGCTCGGTGGTGGA 59.600 50.000 0.00 0.00 0.00 4.02
412 415 0.321653 AAAGATGCTCGGTGGTGGAC 60.322 55.000 0.00 0.00 0.00 4.02
413 416 2.125106 GATGCTCGGTGGTGGACC 60.125 66.667 0.00 0.00 42.07 4.46
414 417 3.682292 GATGCTCGGTGGTGGACCC 62.682 68.421 0.00 0.00 42.62 4.46
428 431 2.240493 GGACCCAATCCTATGTGACG 57.760 55.000 0.00 0.00 45.22 4.35
429 432 1.202651 GGACCCAATCCTATGTGACGG 60.203 57.143 0.00 0.00 45.22 4.79
430 433 1.760613 GACCCAATCCTATGTGACGGA 59.239 52.381 0.00 0.00 0.00 4.69
431 434 2.368875 GACCCAATCCTATGTGACGGAT 59.631 50.000 0.00 0.00 41.68 4.18
432 435 2.104792 ACCCAATCCTATGTGACGGATG 59.895 50.000 0.00 0.00 39.86 3.51
433 436 2.146342 CCAATCCTATGTGACGGATGC 58.854 52.381 0.00 0.00 39.86 3.91
434 437 2.485302 CCAATCCTATGTGACGGATGCA 60.485 50.000 0.00 0.00 39.86 3.96
435 438 2.804527 CAATCCTATGTGACGGATGCAG 59.195 50.000 0.00 0.00 39.86 4.41
436 439 0.752658 TCCTATGTGACGGATGCAGG 59.247 55.000 0.00 0.00 0.00 4.85
437 440 0.752658 CCTATGTGACGGATGCAGGA 59.247 55.000 0.00 0.00 0.00 3.86
438 441 1.539065 CCTATGTGACGGATGCAGGAC 60.539 57.143 0.00 0.00 0.00 3.85
439 442 0.464036 TATGTGACGGATGCAGGACC 59.536 55.000 0.00 0.00 0.00 4.46
440 443 1.552799 ATGTGACGGATGCAGGACCA 61.553 55.000 0.00 0.00 0.00 4.02
441 444 1.741770 GTGACGGATGCAGGACCAC 60.742 63.158 0.00 0.00 0.00 4.16
442 445 1.913262 TGACGGATGCAGGACCACT 60.913 57.895 0.00 0.00 0.00 4.00
443 446 0.613572 TGACGGATGCAGGACCACTA 60.614 55.000 0.00 0.00 0.00 2.74
444 447 0.535335 GACGGATGCAGGACCACTAA 59.465 55.000 0.00 0.00 0.00 2.24
445 448 0.249398 ACGGATGCAGGACCACTAAC 59.751 55.000 0.00 0.00 0.00 2.34
446 449 0.462047 CGGATGCAGGACCACTAACC 60.462 60.000 0.00 0.00 0.00 2.85
447 450 0.462047 GGATGCAGGACCACTAACCG 60.462 60.000 0.00 0.00 0.00 4.44
448 451 0.462047 GATGCAGGACCACTAACCGG 60.462 60.000 0.00 0.00 0.00 5.28
449 452 0.907704 ATGCAGGACCACTAACCGGA 60.908 55.000 9.46 0.00 0.00 5.14
450 453 1.079336 GCAGGACCACTAACCGGAC 60.079 63.158 9.46 0.00 0.00 4.79
451 454 1.823169 GCAGGACCACTAACCGGACA 61.823 60.000 9.46 0.00 0.00 4.02
452 455 0.037605 CAGGACCACTAACCGGACAC 60.038 60.000 9.46 0.00 0.00 3.67
453 456 1.080298 GGACCACTAACCGGACACG 60.080 63.158 9.46 0.00 40.55 4.49
454 457 1.735559 GACCACTAACCGGACACGC 60.736 63.158 9.46 0.00 39.22 5.34
455 458 2.433664 CCACTAACCGGACACGCC 60.434 66.667 9.46 0.00 39.22 5.68
456 459 2.340809 CACTAACCGGACACGCCA 59.659 61.111 9.46 0.00 39.22 5.69
457 460 1.736645 CACTAACCGGACACGCCAG 60.737 63.158 9.46 0.00 39.22 4.85
458 461 2.125673 CTAACCGGACACGCCAGG 60.126 66.667 9.46 0.00 39.22 4.45
459 462 3.659089 CTAACCGGACACGCCAGGG 62.659 68.421 9.46 0.00 39.22 4.45
467 470 4.767255 CACGCCAGGGCACTCCTC 62.767 72.222 11.42 0.00 46.12 3.71
469 472 3.790437 CGCCAGGGCACTCCTCAT 61.790 66.667 11.42 0.00 46.12 2.90
470 473 2.434843 CGCCAGGGCACTCCTCATA 61.435 63.158 11.42 0.00 46.12 2.15
471 474 1.147153 GCCAGGGCACTCCTCATAC 59.853 63.158 5.20 0.00 46.12 2.39
472 475 1.832912 CCAGGGCACTCCTCATACC 59.167 63.158 0.00 0.00 46.12 2.73
473 476 1.700042 CCAGGGCACTCCTCATACCC 61.700 65.000 0.00 0.00 46.12 3.69
474 477 0.982852 CAGGGCACTCCTCATACCCA 60.983 60.000 0.00 0.00 46.12 4.51
475 478 0.029681 AGGGCACTCCTCATACCCAT 60.030 55.000 0.00 0.00 44.06 4.00
476 479 0.398318 GGGCACTCCTCATACCCATC 59.602 60.000 0.00 0.00 40.52 3.51
477 480 1.428869 GGCACTCCTCATACCCATCT 58.571 55.000 0.00 0.00 0.00 2.90
478 481 1.346068 GGCACTCCTCATACCCATCTC 59.654 57.143 0.00 0.00 0.00 2.75
479 482 2.042464 GCACTCCTCATACCCATCTCA 58.958 52.381 0.00 0.00 0.00 3.27
480 483 2.636893 GCACTCCTCATACCCATCTCAT 59.363 50.000 0.00 0.00 0.00 2.90
481 484 3.834813 GCACTCCTCATACCCATCTCATA 59.165 47.826 0.00 0.00 0.00 2.15
482 485 4.469227 GCACTCCTCATACCCATCTCATAT 59.531 45.833 0.00 0.00 0.00 1.78
483 486 5.658634 GCACTCCTCATACCCATCTCATATA 59.341 44.000 0.00 0.00 0.00 0.86
484 487 6.326064 GCACTCCTCATACCCATCTCATATAT 59.674 42.308 0.00 0.00 0.00 0.86
485 488 7.507277 GCACTCCTCATACCCATCTCATATATA 59.493 40.741 0.00 0.00 0.00 0.86
486 489 9.426534 CACTCCTCATACCCATCTCATATATAA 57.573 37.037 0.00 0.00 0.00 0.98
487 490 9.653516 ACTCCTCATACCCATCTCATATATAAG 57.346 37.037 0.00 0.00 0.00 1.73
488 491 9.874195 CTCCTCATACCCATCTCATATATAAGA 57.126 37.037 0.00 0.00 0.00 2.10
504 507 9.217278 CATATATAAGATGAATATGAGGGCTGC 57.783 37.037 0.00 0.00 36.22 5.25
505 508 2.875094 AGATGAATATGAGGGCTGCC 57.125 50.000 11.05 11.05 0.00 4.85
506 509 1.002888 AGATGAATATGAGGGCTGCCG 59.997 52.381 13.40 0.00 0.00 5.69
507 510 0.037303 ATGAATATGAGGGCTGCCGG 59.963 55.000 13.40 0.00 0.00 6.13
508 511 1.053835 TGAATATGAGGGCTGCCGGA 61.054 55.000 13.40 0.00 0.00 5.14
509 512 0.603975 GAATATGAGGGCTGCCGGAC 60.604 60.000 13.40 7.00 0.00 4.79
510 513 1.344953 AATATGAGGGCTGCCGGACA 61.345 55.000 13.40 12.53 0.00 4.02
511 514 1.344953 ATATGAGGGCTGCCGGACAA 61.345 55.000 13.40 0.00 0.00 3.18
512 515 2.252072 TATGAGGGCTGCCGGACAAC 62.252 60.000 13.40 0.00 0.00 3.32
526 529 2.089201 GGACAACCCGGACATTTAAGG 58.911 52.381 0.73 0.00 0.00 2.69
527 530 2.290450 GGACAACCCGGACATTTAAGGA 60.290 50.000 0.73 0.00 0.00 3.36
528 531 3.007635 GACAACCCGGACATTTAAGGAG 58.992 50.000 0.73 0.00 0.00 3.69
529 532 2.640826 ACAACCCGGACATTTAAGGAGA 59.359 45.455 0.73 0.00 0.00 3.71
530 533 3.007635 CAACCCGGACATTTAAGGAGAC 58.992 50.000 0.73 0.00 0.00 3.36
543 546 1.490574 AGGAGACTTTGAGGGATCCG 58.509 55.000 5.45 0.00 37.44 4.18
544 547 0.466124 GGAGACTTTGAGGGATCCGG 59.534 60.000 5.45 0.00 0.00 5.14
545 548 0.179070 GAGACTTTGAGGGATCCGGC 60.179 60.000 5.45 0.09 0.00 6.13
546 549 0.618968 AGACTTTGAGGGATCCGGCT 60.619 55.000 5.45 0.00 0.00 5.52
547 550 0.462759 GACTTTGAGGGATCCGGCTG 60.463 60.000 5.45 0.00 0.00 4.85
548 551 1.153086 CTTTGAGGGATCCGGCTGG 60.153 63.158 4.71 4.71 0.00 4.85
549 552 2.615227 CTTTGAGGGATCCGGCTGGG 62.615 65.000 12.87 0.00 35.24 4.45
550 553 3.943137 TTGAGGGATCCGGCTGGGT 62.943 63.158 12.87 3.42 37.00 4.51
551 554 3.551407 GAGGGATCCGGCTGGGTC 61.551 72.222 17.31 17.31 45.42 4.46
555 558 2.124695 GATCCGGCTGGGTCAACC 60.125 66.667 20.64 0.00 45.47 3.77
556 559 2.610859 ATCCGGCTGGGTCAACCT 60.611 61.111 12.87 0.00 41.11 3.50
557 560 2.198304 GATCCGGCTGGGTCAACCTT 62.198 60.000 20.64 0.00 45.47 3.50
558 561 1.789576 ATCCGGCTGGGTCAACCTTT 61.790 55.000 12.87 0.00 41.11 3.11
559 562 1.530655 CCGGCTGGGTCAACCTTTT 60.531 57.895 2.57 0.00 41.11 2.27
560 563 1.659794 CGGCTGGGTCAACCTTTTG 59.340 57.895 0.00 0.00 41.11 2.44
561 564 1.367471 GGCTGGGTCAACCTTTTGC 59.633 57.895 0.00 0.00 41.11 3.68
562 565 1.115326 GGCTGGGTCAACCTTTTGCT 61.115 55.000 0.00 0.00 41.11 3.91
563 566 0.752658 GCTGGGTCAACCTTTTGCTT 59.247 50.000 0.00 0.00 41.11 3.91
564 567 1.269778 GCTGGGTCAACCTTTTGCTTC 60.270 52.381 0.00 0.00 41.11 3.86
565 568 2.310538 CTGGGTCAACCTTTTGCTTCT 58.689 47.619 0.00 0.00 41.11 2.85
566 569 2.294512 CTGGGTCAACCTTTTGCTTCTC 59.705 50.000 0.00 0.00 41.11 2.87
567 570 2.091885 TGGGTCAACCTTTTGCTTCTCT 60.092 45.455 0.00 0.00 41.11 3.10
568 571 2.554462 GGGTCAACCTTTTGCTTCTCTC 59.446 50.000 0.00 0.00 35.85 3.20
569 572 3.481453 GGTCAACCTTTTGCTTCTCTCT 58.519 45.455 0.00 0.00 32.17 3.10
570 573 3.500299 GGTCAACCTTTTGCTTCTCTCTC 59.500 47.826 0.00 0.00 32.17 3.20
571 574 3.500299 GTCAACCTTTTGCTTCTCTCTCC 59.500 47.826 0.00 0.00 32.17 3.71
572 575 3.392616 TCAACCTTTTGCTTCTCTCTCCT 59.607 43.478 0.00 0.00 32.17 3.69
573 576 3.415457 ACCTTTTGCTTCTCTCTCCTG 57.585 47.619 0.00 0.00 0.00 3.86
574 577 2.708325 ACCTTTTGCTTCTCTCTCCTGT 59.292 45.455 0.00 0.00 0.00 4.00
575 578 3.244387 ACCTTTTGCTTCTCTCTCCTGTC 60.244 47.826 0.00 0.00 0.00 3.51
576 579 3.333804 CTTTTGCTTCTCTCTCCTGTCC 58.666 50.000 0.00 0.00 0.00 4.02
577 580 0.891373 TTGCTTCTCTCTCCTGTCCG 59.109 55.000 0.00 0.00 0.00 4.79
578 581 0.967887 TGCTTCTCTCTCCTGTCCGG 60.968 60.000 0.00 0.00 0.00 5.14
579 582 0.968393 GCTTCTCTCTCCTGTCCGGT 60.968 60.000 0.00 0.00 0.00 5.28
580 583 1.099689 CTTCTCTCTCCTGTCCGGTC 58.900 60.000 0.00 0.00 0.00 4.79
581 584 0.404426 TTCTCTCTCCTGTCCGGTCA 59.596 55.000 0.00 0.00 0.00 4.02
582 585 0.404426 TCTCTCTCCTGTCCGGTCAA 59.596 55.000 0.00 0.00 0.00 3.18
583 586 1.006043 TCTCTCTCCTGTCCGGTCAAT 59.994 52.381 0.00 0.00 0.00 2.57
584 587 1.827969 CTCTCTCCTGTCCGGTCAATT 59.172 52.381 0.00 0.00 0.00 2.32
585 588 1.550524 TCTCTCCTGTCCGGTCAATTG 59.449 52.381 0.00 0.00 0.00 2.32
586 589 1.276421 CTCTCCTGTCCGGTCAATTGT 59.724 52.381 5.13 0.00 0.00 2.71
587 590 1.275291 TCTCCTGTCCGGTCAATTGTC 59.725 52.381 5.13 0.00 0.00 3.18
588 591 0.323629 TCCTGTCCGGTCAATTGTCC 59.676 55.000 11.27 11.27 0.00 4.02
589 592 0.676782 CCTGTCCGGTCAATTGTCCC 60.677 60.000 14.94 10.64 0.00 4.46
590 593 0.324943 CTGTCCGGTCAATTGTCCCT 59.675 55.000 14.94 0.00 0.00 4.20
591 594 1.553248 CTGTCCGGTCAATTGTCCCTA 59.447 52.381 14.94 1.97 0.00 3.53
592 595 1.276989 TGTCCGGTCAATTGTCCCTAC 59.723 52.381 14.94 13.08 0.00 3.18
593 596 1.276989 GTCCGGTCAATTGTCCCTACA 59.723 52.381 14.94 0.00 0.00 2.74
594 597 2.093128 GTCCGGTCAATTGTCCCTACAT 60.093 50.000 14.94 0.00 34.97 2.29
595 598 2.574369 TCCGGTCAATTGTCCCTACATT 59.426 45.455 14.94 0.00 34.97 2.71
596 599 2.943033 CCGGTCAATTGTCCCTACATTC 59.057 50.000 14.94 0.00 34.97 2.67
597 600 2.607635 CGGTCAATTGTCCCTACATTCG 59.392 50.000 14.94 0.00 34.97 3.34
598 601 3.677700 CGGTCAATTGTCCCTACATTCGA 60.678 47.826 14.94 0.00 34.97 3.71
599 602 3.621715 GGTCAATTGTCCCTACATTCGAC 59.378 47.826 10.30 0.00 34.97 4.20
600 603 3.621715 GTCAATTGTCCCTACATTCGACC 59.378 47.826 5.13 0.00 34.97 4.79
601 604 2.596904 ATTGTCCCTACATTCGACCG 57.403 50.000 0.00 0.00 34.97 4.79
602 605 0.533491 TTGTCCCTACATTCGACCGG 59.467 55.000 0.00 0.00 34.97 5.28
603 606 0.612732 TGTCCCTACATTCGACCGGT 60.613 55.000 6.92 6.92 0.00 5.28
604 607 0.101939 GTCCCTACATTCGACCGGTC 59.898 60.000 25.28 25.28 0.00 4.79
605 608 0.323633 TCCCTACATTCGACCGGTCA 60.324 55.000 32.80 16.29 0.00 4.02
606 609 0.533491 CCCTACATTCGACCGGTCAA 59.467 55.000 32.80 24.50 0.00 3.18
607 610 1.138266 CCCTACATTCGACCGGTCAAT 59.862 52.381 32.80 25.46 0.00 2.57
608 611 2.419574 CCCTACATTCGACCGGTCAATT 60.420 50.000 32.80 20.33 0.00 2.32
609 612 3.267483 CCTACATTCGACCGGTCAATTT 58.733 45.455 32.80 23.30 0.00 1.82
610 613 3.063452 CCTACATTCGACCGGTCAATTTG 59.937 47.826 32.80 24.07 0.00 2.32
611 614 2.773487 ACATTCGACCGGTCAATTTGA 58.227 42.857 32.80 19.04 0.00 2.69
612 615 2.742053 ACATTCGACCGGTCAATTTGAG 59.258 45.455 32.80 19.19 0.00 3.02
613 616 1.803334 TTCGACCGGTCAATTTGAGG 58.197 50.000 32.80 14.79 0.00 3.86
614 617 0.970640 TCGACCGGTCAATTTGAGGA 59.029 50.000 32.80 16.87 0.00 3.71
615 618 1.067142 TCGACCGGTCAATTTGAGGAG 60.067 52.381 32.80 13.35 0.00 3.69
616 619 1.337823 CGACCGGTCAATTTGAGGAGT 60.338 52.381 32.80 3.86 0.00 3.85
617 620 2.347731 GACCGGTCAATTTGAGGAGTC 58.652 52.381 29.75 8.60 0.00 3.36
618 621 1.003233 ACCGGTCAATTTGAGGAGTCC 59.997 52.381 0.00 0.00 0.00 3.85
619 622 1.003118 CCGGTCAATTTGAGGAGTCCA 59.997 52.381 12.86 0.00 0.00 4.02
620 623 2.350522 CGGTCAATTTGAGGAGTCCAG 58.649 52.381 12.86 0.00 0.00 3.86
621 624 2.289694 CGGTCAATTTGAGGAGTCCAGT 60.290 50.000 12.86 0.00 0.00 4.00
622 625 3.756117 GGTCAATTTGAGGAGTCCAGTT 58.244 45.455 12.86 0.00 0.00 3.16
623 626 3.503748 GGTCAATTTGAGGAGTCCAGTTG 59.496 47.826 12.86 8.53 0.00 3.16
624 627 4.137543 GTCAATTTGAGGAGTCCAGTTGT 58.862 43.478 12.86 0.00 0.00 3.32
625 628 5.305585 GTCAATTTGAGGAGTCCAGTTGTA 58.694 41.667 12.86 0.00 0.00 2.41
626 629 5.409826 GTCAATTTGAGGAGTCCAGTTGTAG 59.590 44.000 12.86 0.00 0.00 2.74
627 630 5.306937 TCAATTTGAGGAGTCCAGTTGTAGA 59.693 40.000 12.86 0.00 0.00 2.59
628 631 6.013379 TCAATTTGAGGAGTCCAGTTGTAGAT 60.013 38.462 12.86 0.00 0.00 1.98
629 632 4.808414 TTGAGGAGTCCAGTTGTAGATG 57.192 45.455 12.86 0.00 0.00 2.90
630 633 2.497675 TGAGGAGTCCAGTTGTAGATGC 59.502 50.000 12.86 0.00 0.00 3.91
631 634 2.763448 GAGGAGTCCAGTTGTAGATGCT 59.237 50.000 12.86 0.00 0.00 3.79
677 680 1.197036 CGTAGTCTCTGCGTCAGTTCA 59.803 52.381 6.72 0.00 35.06 3.18
713 716 0.917259 CGTCATTGTAGTCTCTGCGC 59.083 55.000 0.00 0.00 0.00 6.09
716 719 1.134995 TCATTGTAGTCTCTGCGCCAG 60.135 52.381 4.18 0.00 0.00 4.85
720 723 0.458716 GTAGTCTCTGCGCCAGTTCC 60.459 60.000 4.18 0.00 32.61 3.62
782 785 7.624360 AAGAATTTCAGTTGCGTGGATAATA 57.376 32.000 0.00 0.00 0.00 0.98
825 828 4.700213 ACAGACCATACATTTTCCCTTTCG 59.300 41.667 0.00 0.00 0.00 3.46
841 844 7.597288 TCCCTTTCGAAGAGAACATATATGA 57.403 36.000 19.63 0.00 38.83 2.15
850 853 8.249638 CGAAGAGAACATATATGAGATCCACAT 58.750 37.037 19.63 7.87 0.00 3.21
1023 1053 9.112725 CCTATGAAACACATTTACTCATCATCA 57.887 33.333 0.00 0.00 40.07 3.07
1073 1109 1.383456 CCCATATGTTGCACCGGTGG 61.383 60.000 34.58 17.30 0.00 4.61
1075 1111 1.031571 CATATGTTGCACCGGTGGCT 61.032 55.000 34.58 13.77 0.00 4.75
1081 1117 4.740822 GCACCGGTGGCTTCCCAT 62.741 66.667 34.58 0.00 44.51 4.00
1082 1118 2.438434 CACCGGTGGCTTCCCATC 60.438 66.667 27.57 0.00 44.51 3.51
1084 1120 2.231380 ACCGGTGGCTTCCCATCTT 61.231 57.895 6.12 0.00 44.51 2.40
1085 1121 1.452108 CCGGTGGCTTCCCATCTTC 60.452 63.158 0.00 0.00 44.51 2.87
1118 1161 1.419387 CATGGATTCCCTCCTCTGGTC 59.581 57.143 0.00 0.00 45.21 4.02
2007 2089 3.468063 ACCACGGTGAACCTCCTC 58.532 61.111 10.28 0.00 0.00 3.71
2100 2425 1.478510 GAGCAGAAGATCCTGGACGAA 59.521 52.381 0.00 0.00 34.82 3.85
2451 2788 1.218047 CATCTCCTTCAACGCCGGA 59.782 57.895 5.05 0.00 0.00 5.14
2533 2870 0.319900 GCTCTGGAACTTCGCAGTCA 60.320 55.000 0.00 0.00 30.45 3.41
2544 2881 2.031163 GCAGTCAAGACCGTGCCT 59.969 61.111 3.77 0.00 0.00 4.75
2675 3019 3.117738 ACCTACGTGCCTACTACCTACAT 60.118 47.826 0.00 0.00 0.00 2.29
2699 3043 1.433837 CGGCCACAAAGTATACGGGC 61.434 60.000 2.24 13.55 40.63 6.13
2714 3058 3.492421 ACGGGCCGTATATATGTAACG 57.508 47.619 33.31 0.00 38.73 3.18
2715 3059 2.819608 ACGGGCCGTATATATGTAACGT 59.180 45.455 33.31 0.00 38.73 3.99
2716 3060 4.006989 ACGGGCCGTATATATGTAACGTA 58.993 43.478 33.31 0.00 38.73 3.57
2717 3061 4.094887 ACGGGCCGTATATATGTAACGTAG 59.905 45.833 33.31 0.00 38.73 3.51
2719 3063 4.096984 GGGCCGTATATATGTAACGTAGCT 59.903 45.833 0.00 0.00 34.90 3.32
3073 3430 8.036575 ACTTTTGTATGCTACATCATTTTGCAT 58.963 29.630 0.00 0.00 44.93 3.96
3088 3445 1.742768 GCATCTAGCAGTAGCCCGT 59.257 57.895 0.00 0.00 44.79 5.28
3089 3446 0.959553 GCATCTAGCAGTAGCCCGTA 59.040 55.000 0.00 0.00 44.79 4.02
3137 3495 2.023673 TGGAAGCAGCATTAATTCGGG 58.976 47.619 0.00 0.00 0.00 5.14
3222 3825 0.036388 CACGCACAGGACAGGGTATT 60.036 55.000 0.00 0.00 0.00 1.89
3316 3930 7.400599 AGAAGGAACTGTGTACGTATGAATA 57.599 36.000 0.00 0.00 40.86 1.75
3317 3931 7.833786 AGAAGGAACTGTGTACGTATGAATAA 58.166 34.615 0.00 0.00 40.86 1.40
3318 3932 8.475639 AGAAGGAACTGTGTACGTATGAATAAT 58.524 33.333 0.00 0.00 40.86 1.28
3319 3933 9.095065 GAAGGAACTGTGTACGTATGAATAATT 57.905 33.333 0.00 0.00 40.86 1.40
3320 3934 8.644318 AGGAACTGTGTACGTATGAATAATTC 57.356 34.615 0.00 0.00 37.18 2.17
3321 3935 8.255206 AGGAACTGTGTACGTATGAATAATTCA 58.745 33.333 0.00 0.00 40.60 2.57
3322 3936 8.875803 GGAACTGTGTACGTATGAATAATTCAA 58.124 33.333 0.00 0.00 43.95 2.69
3323 3937 9.685005 GAACTGTGTACGTATGAATAATTCAAC 57.315 33.333 0.00 0.00 43.95 3.18
3324 3938 8.997621 ACTGTGTACGTATGAATAATTCAACT 57.002 30.769 0.00 0.00 43.95 3.16
3325 3939 9.431887 ACTGTGTACGTATGAATAATTCAACTT 57.568 29.630 0.00 0.00 43.95 2.66
3331 3945 8.447787 ACGTATGAATAATTCAACTTTGTTGC 57.552 30.769 5.65 0.00 43.95 4.17
3332 3946 7.270365 ACGTATGAATAATTCAACTTTGTTGCG 59.730 33.333 5.65 0.00 43.95 4.85
3333 3947 5.820926 TGAATAATTCAACTTTGTTGCGC 57.179 34.783 0.00 0.00 36.59 6.09
3334 3948 5.284864 TGAATAATTCAACTTTGTTGCGCA 58.715 33.333 5.66 5.66 36.59 6.09
3335 3949 5.750547 TGAATAATTCAACTTTGTTGCGCAA 59.249 32.000 21.02 21.02 36.59 4.85
3336 3950 6.256539 TGAATAATTCAACTTTGTTGCGCAAA 59.743 30.769 26.87 12.59 39.54 3.68
3337 3951 4.935885 AATTCAACTTTGTTGCGCAAAA 57.064 31.818 26.87 18.56 45.35 2.44
3338 3952 4.935885 ATTCAACTTTGTTGCGCAAAAA 57.064 31.818 26.87 24.11 45.35 1.94
3488 4107 2.559231 GAGTACTACCCTGCTATCTGCC 59.441 54.545 0.00 0.00 42.00 4.85
3526 4145 7.410300 CGACGAACGAATACTACTATAGACTCC 60.410 44.444 6.78 0.00 45.77 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 7.913674 TTGAACCAACAACATTTTAGCTTTT 57.086 28.000 0.00 0.00 0.00 2.27
37 39 6.215845 AGATGTTAAGTGCATTTGAACCAAC 58.784 36.000 4.47 1.44 0.00 3.77
168 171 1.759445 GCTTCAGGCTGAGATGGTAGA 59.241 52.381 17.91 0.00 38.06 2.59
196 199 1.683385 TGATCAGTCCGGCAGTAGATG 59.317 52.381 0.00 0.00 0.00 2.90
197 200 2.073252 TGATCAGTCCGGCAGTAGAT 57.927 50.000 0.00 0.00 0.00 1.98
198 201 1.847328 TTGATCAGTCCGGCAGTAGA 58.153 50.000 0.00 0.00 0.00 2.59
199 202 2.672961 TTTGATCAGTCCGGCAGTAG 57.327 50.000 0.00 0.00 0.00 2.57
200 203 3.627395 AATTTGATCAGTCCGGCAGTA 57.373 42.857 0.00 0.00 0.00 2.74
201 204 2.489329 CAAATTTGATCAGTCCGGCAGT 59.511 45.455 13.08 0.00 0.00 4.40
202 205 2.159338 CCAAATTTGATCAGTCCGGCAG 60.159 50.000 19.86 0.00 0.00 4.85
203 206 1.818060 CCAAATTTGATCAGTCCGGCA 59.182 47.619 19.86 0.00 0.00 5.69
204 207 1.469767 GCCAAATTTGATCAGTCCGGC 60.470 52.381 19.86 7.17 0.00 6.13
205 208 1.134946 GGCCAAATTTGATCAGTCCGG 59.865 52.381 19.86 0.00 0.00 5.14
206 209 1.134946 GGGCCAAATTTGATCAGTCCG 59.865 52.381 19.86 1.30 0.00 4.79
207 210 1.482182 GGGGCCAAATTTGATCAGTCC 59.518 52.381 19.86 12.81 0.00 3.85
208 211 2.428530 GAGGGGCCAAATTTGATCAGTC 59.571 50.000 19.86 4.05 0.00 3.51
209 212 2.043526 AGAGGGGCCAAATTTGATCAGT 59.956 45.455 19.86 1.09 0.00 3.41
210 213 2.743553 AGAGGGGCCAAATTTGATCAG 58.256 47.619 19.86 3.85 0.00 2.90
211 214 2.925966 AGAGGGGCCAAATTTGATCA 57.074 45.000 19.86 0.00 0.00 2.92
212 215 3.066760 CGTTAGAGGGGCCAAATTTGATC 59.933 47.826 19.86 10.31 0.00 2.92
213 216 3.023832 CGTTAGAGGGGCCAAATTTGAT 58.976 45.455 19.86 0.05 0.00 2.57
214 217 2.224917 ACGTTAGAGGGGCCAAATTTGA 60.225 45.455 19.86 0.00 0.00 2.69
215 218 2.163613 GACGTTAGAGGGGCCAAATTTG 59.836 50.000 11.40 11.40 0.00 2.32
216 219 2.443416 GACGTTAGAGGGGCCAAATTT 58.557 47.619 4.39 0.00 0.00 1.82
217 220 1.340697 GGACGTTAGAGGGGCCAAATT 60.341 52.381 4.39 0.00 0.00 1.82
218 221 0.255033 GGACGTTAGAGGGGCCAAAT 59.745 55.000 4.39 0.00 0.00 2.32
219 222 1.681076 GGACGTTAGAGGGGCCAAA 59.319 57.895 4.39 0.00 0.00 3.28
220 223 2.652095 CGGACGTTAGAGGGGCCAA 61.652 63.158 4.39 0.00 0.00 4.52
221 224 3.072468 CGGACGTTAGAGGGGCCA 61.072 66.667 4.39 0.00 0.00 5.36
222 225 4.525949 GCGGACGTTAGAGGGGCC 62.526 72.222 0.00 0.00 0.00 5.80
223 226 4.867599 CGCGGACGTTAGAGGGGC 62.868 72.222 0.00 0.00 33.53 5.80
224 227 4.203076 CCGCGGACGTTAGAGGGG 62.203 72.222 24.07 4.64 37.70 4.79
225 228 3.136123 TCCGCGGACGTTAGAGGG 61.136 66.667 27.28 0.00 37.70 4.30
226 229 2.101770 GTCCGCGGACGTTAGAGG 59.898 66.667 39.77 3.67 37.70 3.69
256 259 4.752879 AATGGACACGCCCGGACG 62.753 66.667 9.22 9.22 39.50 4.79
257 260 1.969589 AAAATGGACACGCCCGGAC 60.970 57.895 0.73 0.00 34.97 4.79
258 261 1.969064 CAAAATGGACACGCCCGGA 60.969 57.895 0.73 0.00 34.97 5.14
259 262 1.969064 TCAAAATGGACACGCCCGG 60.969 57.895 0.00 0.00 34.97 5.73
260 263 1.209127 GTCAAAATGGACACGCCCG 59.791 57.895 0.00 0.00 37.73 6.13
261 264 0.521735 GAGTCAAAATGGACACGCCC 59.478 55.000 0.00 0.00 40.29 6.13
262 265 0.521735 GGAGTCAAAATGGACACGCC 59.478 55.000 0.00 0.00 40.29 5.68
263 266 0.521735 GGGAGTCAAAATGGACACGC 59.478 55.000 0.00 0.00 40.29 5.34
264 267 2.185004 AGGGAGTCAAAATGGACACG 57.815 50.000 0.00 0.00 40.29 4.49
265 268 6.590234 AAAATAGGGAGTCAAAATGGACAC 57.410 37.500 0.00 0.00 40.29 3.67
266 269 6.072175 CGAAAAATAGGGAGTCAAAATGGACA 60.072 38.462 0.00 0.00 40.29 4.02
267 270 6.072119 ACGAAAAATAGGGAGTCAAAATGGAC 60.072 38.462 0.00 0.00 38.08 4.02
268 271 6.007703 ACGAAAAATAGGGAGTCAAAATGGA 58.992 36.000 0.00 0.00 0.00 3.41
269 272 6.267496 ACGAAAAATAGGGAGTCAAAATGG 57.733 37.500 0.00 0.00 0.00 3.16
270 273 7.326063 GTGAACGAAAAATAGGGAGTCAAAATG 59.674 37.037 0.00 0.00 0.00 2.32
271 274 7.368059 GTGAACGAAAAATAGGGAGTCAAAAT 58.632 34.615 0.00 0.00 0.00 1.82
272 275 6.512091 CGTGAACGAAAAATAGGGAGTCAAAA 60.512 38.462 0.00 0.00 43.02 2.44
273 276 5.049954 CGTGAACGAAAAATAGGGAGTCAAA 60.050 40.000 0.00 0.00 43.02 2.69
274 277 4.449743 CGTGAACGAAAAATAGGGAGTCAA 59.550 41.667 0.00 0.00 43.02 3.18
275 278 3.991773 CGTGAACGAAAAATAGGGAGTCA 59.008 43.478 0.00 0.00 43.02 3.41
276 279 3.181523 GCGTGAACGAAAAATAGGGAGTC 60.182 47.826 7.10 0.00 43.02 3.36
277 280 2.740447 GCGTGAACGAAAAATAGGGAGT 59.260 45.455 7.10 0.00 43.02 3.85
278 281 2.739913 TGCGTGAACGAAAAATAGGGAG 59.260 45.455 7.10 0.00 43.02 4.30
279 282 2.739913 CTGCGTGAACGAAAAATAGGGA 59.260 45.455 7.10 0.00 43.02 4.20
280 283 2.727916 GCTGCGTGAACGAAAAATAGGG 60.728 50.000 7.10 0.00 43.02 3.53
281 284 2.505866 GCTGCGTGAACGAAAAATAGG 58.494 47.619 7.10 0.00 43.02 2.57
282 285 2.095969 TGGCTGCGTGAACGAAAAATAG 60.096 45.455 7.10 0.00 43.02 1.73
283 286 1.874231 TGGCTGCGTGAACGAAAAATA 59.126 42.857 7.10 0.00 43.02 1.40
284 287 0.665835 TGGCTGCGTGAACGAAAAAT 59.334 45.000 7.10 0.00 43.02 1.82
285 288 0.665835 ATGGCTGCGTGAACGAAAAA 59.334 45.000 7.10 0.00 43.02 1.94
286 289 0.040514 CATGGCTGCGTGAACGAAAA 60.041 50.000 7.10 0.00 43.02 2.29
287 290 1.163420 ACATGGCTGCGTGAACGAAA 61.163 50.000 7.10 0.00 43.02 3.46
288 291 1.565156 GACATGGCTGCGTGAACGAA 61.565 55.000 7.10 0.00 43.02 3.85
289 292 2.027073 GACATGGCTGCGTGAACGA 61.027 57.895 7.10 0.00 43.02 3.85
290 293 2.476051 GACATGGCTGCGTGAACG 59.524 61.111 10.09 0.00 43.27 3.95
291 294 2.690778 GGGACATGGCTGCGTGAAC 61.691 63.158 0.00 4.59 0.00 3.18
292 295 2.359850 GGGACATGGCTGCGTGAA 60.360 61.111 0.00 0.00 0.00 3.18
293 296 3.315142 GAGGGACATGGCTGCGTGA 62.315 63.158 0.00 0.00 0.00 4.35
294 297 2.821366 GAGGGACATGGCTGCGTG 60.821 66.667 0.00 0.00 0.00 5.34
295 298 3.321648 TGAGGGACATGGCTGCGT 61.322 61.111 0.00 0.00 0.00 5.24
296 299 2.809861 AAGTGAGGGACATGGCTGCG 62.810 60.000 0.00 0.00 0.00 5.18
297 300 0.610232 AAAGTGAGGGACATGGCTGC 60.610 55.000 0.00 0.00 0.00 5.25
298 301 1.815003 GAAAAGTGAGGGACATGGCTG 59.185 52.381 0.00 0.00 0.00 4.85
299 302 1.707427 AGAAAAGTGAGGGACATGGCT 59.293 47.619 0.00 0.00 0.00 4.75
300 303 2.087646 GAGAAAAGTGAGGGACATGGC 58.912 52.381 0.00 0.00 0.00 4.40
301 304 2.289694 ACGAGAAAAGTGAGGGACATGG 60.290 50.000 0.00 0.00 0.00 3.66
302 305 3.045601 ACGAGAAAAGTGAGGGACATG 57.954 47.619 0.00 0.00 0.00 3.21
303 306 3.771577 AACGAGAAAAGTGAGGGACAT 57.228 42.857 0.00 0.00 0.00 3.06
304 307 4.884668 ATAACGAGAAAAGTGAGGGACA 57.115 40.909 0.00 0.00 0.00 4.02
305 308 6.338937 ACATATAACGAGAAAAGTGAGGGAC 58.661 40.000 0.00 0.00 0.00 4.46
306 309 6.406624 GGACATATAACGAGAAAAGTGAGGGA 60.407 42.308 0.00 0.00 0.00 4.20
307 310 5.753921 GGACATATAACGAGAAAAGTGAGGG 59.246 44.000 0.00 0.00 0.00 4.30
308 311 5.459107 CGGACATATAACGAGAAAAGTGAGG 59.541 44.000 0.00 0.00 0.00 3.86
309 312 5.459107 CCGGACATATAACGAGAAAAGTGAG 59.541 44.000 0.00 0.00 0.00 3.51
310 313 5.105635 ACCGGACATATAACGAGAAAAGTGA 60.106 40.000 9.46 0.00 0.00 3.41
311 314 5.107133 ACCGGACATATAACGAGAAAAGTG 58.893 41.667 9.46 0.00 0.00 3.16
312 315 5.105635 TGACCGGACATATAACGAGAAAAGT 60.106 40.000 9.46 0.00 0.00 2.66
313 316 5.231568 GTGACCGGACATATAACGAGAAAAG 59.768 44.000 9.46 0.00 0.00 2.27
314 317 5.104374 GTGACCGGACATATAACGAGAAAA 58.896 41.667 9.46 0.00 0.00 2.29
315 318 4.158209 TGTGACCGGACATATAACGAGAAA 59.842 41.667 9.46 0.00 0.00 2.52
316 319 3.695556 TGTGACCGGACATATAACGAGAA 59.304 43.478 9.46 0.00 0.00 2.87
317 320 3.281158 TGTGACCGGACATATAACGAGA 58.719 45.455 9.46 0.00 0.00 4.04
318 321 3.703286 TGTGACCGGACATATAACGAG 57.297 47.619 9.46 0.00 0.00 4.18
319 322 3.797524 GCATGTGACCGGACATATAACGA 60.798 47.826 15.00 0.00 34.69 3.85
320 323 2.475111 GCATGTGACCGGACATATAACG 59.525 50.000 15.00 5.65 34.69 3.18
321 324 3.462982 TGCATGTGACCGGACATATAAC 58.537 45.455 15.00 11.15 34.69 1.89
322 325 3.828875 TGCATGTGACCGGACATATAA 57.171 42.857 15.00 5.22 34.69 0.98
323 326 3.070878 ACATGCATGTGACCGGACATATA 59.929 43.478 30.92 2.58 40.03 0.86
324 327 2.158769 ACATGCATGTGACCGGACATAT 60.159 45.455 30.92 9.89 40.03 1.78
325 328 1.209261 ACATGCATGTGACCGGACATA 59.791 47.619 30.92 7.28 40.03 2.29
326 329 0.035152 ACATGCATGTGACCGGACAT 60.035 50.000 30.92 5.52 40.03 3.06
327 330 1.374568 ACATGCATGTGACCGGACA 59.625 52.632 30.92 5.04 40.03 4.02
328 331 4.301505 ACATGCATGTGACCGGAC 57.698 55.556 30.92 1.07 40.03 4.79
336 339 3.423749 TCTCCACAAATCACATGCATGT 58.576 40.909 26.61 26.61 42.84 3.21
337 340 4.157105 TCTTCTCCACAAATCACATGCATG 59.843 41.667 25.09 25.09 0.00 4.06
338 341 4.338012 TCTTCTCCACAAATCACATGCAT 58.662 39.130 0.00 0.00 0.00 3.96
339 342 3.753815 TCTTCTCCACAAATCACATGCA 58.246 40.909 0.00 0.00 0.00 3.96
340 343 4.771590 TTCTTCTCCACAAATCACATGC 57.228 40.909 0.00 0.00 0.00 4.06
341 344 6.973843 TCTTTTCTTCTCCACAAATCACATG 58.026 36.000 0.00 0.00 0.00 3.21
342 345 7.000472 TCTCTTTTCTTCTCCACAAATCACAT 59.000 34.615 0.00 0.00 0.00 3.21
343 346 6.356556 TCTCTTTTCTTCTCCACAAATCACA 58.643 36.000 0.00 0.00 0.00 3.58
344 347 6.867662 TCTCTTTTCTTCTCCACAAATCAC 57.132 37.500 0.00 0.00 0.00 3.06
345 348 7.880160 TTTCTCTTTTCTTCTCCACAAATCA 57.120 32.000 0.00 0.00 0.00 2.57
346 349 8.571336 TCATTTCTCTTTTCTTCTCCACAAATC 58.429 33.333 0.00 0.00 0.00 2.17
347 350 8.469309 TCATTTCTCTTTTCTTCTCCACAAAT 57.531 30.769 0.00 0.00 0.00 2.32
348 351 7.880160 TCATTTCTCTTTTCTTCTCCACAAA 57.120 32.000 0.00 0.00 0.00 2.83
349 352 7.880160 TTCATTTCTCTTTTCTTCTCCACAA 57.120 32.000 0.00 0.00 0.00 3.33
350 353 7.880160 TTTCATTTCTCTTTTCTTCTCCACA 57.120 32.000 0.00 0.00 0.00 4.17
391 394 1.202879 TCCACCACCGAGCATCTTTTT 60.203 47.619 0.00 0.00 0.00 1.94
392 395 0.400213 TCCACCACCGAGCATCTTTT 59.600 50.000 0.00 0.00 0.00 2.27
393 396 0.321653 GTCCACCACCGAGCATCTTT 60.322 55.000 0.00 0.00 0.00 2.52
394 397 1.296715 GTCCACCACCGAGCATCTT 59.703 57.895 0.00 0.00 0.00 2.40
395 398 2.660064 GGTCCACCACCGAGCATCT 61.660 63.158 0.00 0.00 34.56 2.90
396 399 2.125106 GGTCCACCACCGAGCATC 60.125 66.667 0.00 0.00 34.56 3.91
409 412 4.829092 ATCCGTCACATAGGATTGGGTCC 61.829 52.174 0.00 0.00 44.26 4.46
410 413 1.760613 TCCGTCACATAGGATTGGGTC 59.239 52.381 0.00 0.00 0.00 4.46
411 414 1.874129 TCCGTCACATAGGATTGGGT 58.126 50.000 0.00 0.00 0.00 4.51
412 415 2.771089 CATCCGTCACATAGGATTGGG 58.229 52.381 0.00 0.00 44.26 4.12
413 416 2.146342 GCATCCGTCACATAGGATTGG 58.854 52.381 0.00 0.00 44.26 3.16
414 417 2.804527 CTGCATCCGTCACATAGGATTG 59.195 50.000 0.00 0.00 44.26 2.67
415 418 2.224378 CCTGCATCCGTCACATAGGATT 60.224 50.000 0.00 0.00 44.26 3.01
417 420 0.752658 CCTGCATCCGTCACATAGGA 59.247 55.000 0.00 0.00 41.30 2.94
418 421 0.752658 TCCTGCATCCGTCACATAGG 59.247 55.000 0.00 0.00 0.00 2.57
419 422 1.539065 GGTCCTGCATCCGTCACATAG 60.539 57.143 0.00 0.00 0.00 2.23
420 423 0.464036 GGTCCTGCATCCGTCACATA 59.536 55.000 0.00 0.00 0.00 2.29
421 424 1.221840 GGTCCTGCATCCGTCACAT 59.778 57.895 0.00 0.00 0.00 3.21
422 425 2.213513 TGGTCCTGCATCCGTCACA 61.214 57.895 0.00 0.00 0.00 3.58
423 426 1.741770 GTGGTCCTGCATCCGTCAC 60.742 63.158 0.00 0.00 0.00 3.67
424 427 0.613572 TAGTGGTCCTGCATCCGTCA 60.614 55.000 0.00 0.00 0.00 4.35
425 428 0.535335 TTAGTGGTCCTGCATCCGTC 59.465 55.000 0.00 0.00 0.00 4.79
426 429 0.249398 GTTAGTGGTCCTGCATCCGT 59.751 55.000 0.00 0.00 0.00 4.69
427 430 0.462047 GGTTAGTGGTCCTGCATCCG 60.462 60.000 0.00 0.00 0.00 4.18
428 431 0.462047 CGGTTAGTGGTCCTGCATCC 60.462 60.000 0.00 0.00 0.00 3.51
429 432 0.462047 CCGGTTAGTGGTCCTGCATC 60.462 60.000 0.00 0.00 0.00 3.91
430 433 0.907704 TCCGGTTAGTGGTCCTGCAT 60.908 55.000 0.00 0.00 0.00 3.96
431 434 1.534476 TCCGGTTAGTGGTCCTGCA 60.534 57.895 0.00 0.00 0.00 4.41
432 435 1.079336 GTCCGGTTAGTGGTCCTGC 60.079 63.158 0.00 0.00 0.00 4.85
433 436 0.037605 GTGTCCGGTTAGTGGTCCTG 60.038 60.000 0.00 0.00 0.00 3.86
434 437 1.530013 CGTGTCCGGTTAGTGGTCCT 61.530 60.000 0.00 0.00 0.00 3.85
435 438 1.080298 CGTGTCCGGTTAGTGGTCC 60.080 63.158 0.00 0.00 0.00 4.46
436 439 1.735559 GCGTGTCCGGTTAGTGGTC 60.736 63.158 0.00 0.00 33.68 4.02
437 440 2.341176 GCGTGTCCGGTTAGTGGT 59.659 61.111 0.00 0.00 33.68 4.16
438 441 2.433664 GGCGTGTCCGGTTAGTGG 60.434 66.667 0.00 0.00 33.68 4.00
439 442 1.736645 CTGGCGTGTCCGGTTAGTG 60.737 63.158 0.00 0.00 36.43 2.74
440 443 2.654877 CTGGCGTGTCCGGTTAGT 59.345 61.111 0.00 0.00 36.43 2.24
441 444 2.125673 CCTGGCGTGTCCGGTTAG 60.126 66.667 0.00 0.00 39.73 2.34
442 445 3.697747 CCCTGGCGTGTCCGGTTA 61.698 66.667 0.00 0.00 39.73 2.85
457 460 0.398318 GATGGGTATGAGGAGTGCCC 59.602 60.000 0.00 0.00 41.42 5.36
458 461 1.346068 GAGATGGGTATGAGGAGTGCC 59.654 57.143 0.00 0.00 0.00 5.01
459 462 2.042464 TGAGATGGGTATGAGGAGTGC 58.958 52.381 0.00 0.00 0.00 4.40
460 463 7.911130 ATATATGAGATGGGTATGAGGAGTG 57.089 40.000 0.00 0.00 0.00 3.51
461 464 9.653516 CTTATATATGAGATGGGTATGAGGAGT 57.346 37.037 0.00 0.00 0.00 3.85
462 465 9.874195 TCTTATATATGAGATGGGTATGAGGAG 57.126 37.037 3.16 0.00 0.00 3.69
478 481 9.217278 GCAGCCCTCATATTCATCTTATATATG 57.783 37.037 0.00 0.00 34.87 1.78
479 482 8.381636 GGCAGCCCTCATATTCATCTTATATAT 58.618 37.037 0.00 0.00 0.00 0.86
480 483 7.471959 CGGCAGCCCTCATATTCATCTTATATA 60.472 40.741 5.63 0.00 0.00 0.86
481 484 6.599445 GGCAGCCCTCATATTCATCTTATAT 58.401 40.000 0.00 0.00 0.00 0.86
482 485 5.395657 CGGCAGCCCTCATATTCATCTTATA 60.396 44.000 5.63 0.00 0.00 0.98
483 486 4.624843 CGGCAGCCCTCATATTCATCTTAT 60.625 45.833 5.63 0.00 0.00 1.73
484 487 3.306989 CGGCAGCCCTCATATTCATCTTA 60.307 47.826 5.63 0.00 0.00 2.10
485 488 2.551721 CGGCAGCCCTCATATTCATCTT 60.552 50.000 5.63 0.00 0.00 2.40
486 489 1.002888 CGGCAGCCCTCATATTCATCT 59.997 52.381 5.63 0.00 0.00 2.90
487 490 1.446907 CGGCAGCCCTCATATTCATC 58.553 55.000 5.63 0.00 0.00 2.92
488 491 0.037303 CCGGCAGCCCTCATATTCAT 59.963 55.000 5.63 0.00 0.00 2.57
489 492 1.053835 TCCGGCAGCCCTCATATTCA 61.054 55.000 5.63 0.00 0.00 2.57
490 493 0.603975 GTCCGGCAGCCCTCATATTC 60.604 60.000 5.63 0.00 0.00 1.75
491 494 1.344953 TGTCCGGCAGCCCTCATATT 61.345 55.000 5.63 0.00 0.00 1.28
492 495 1.344953 TTGTCCGGCAGCCCTCATAT 61.345 55.000 5.63 0.00 0.00 1.78
493 496 1.992834 TTGTCCGGCAGCCCTCATA 60.993 57.895 5.63 0.00 0.00 2.15
494 497 3.329889 TTGTCCGGCAGCCCTCAT 61.330 61.111 5.63 0.00 0.00 2.90
495 498 4.329545 GTTGTCCGGCAGCCCTCA 62.330 66.667 5.63 0.00 0.00 3.86
506 509 2.089201 CCTTAAATGTCCGGGTTGTCC 58.911 52.381 0.00 0.00 0.00 4.02
507 510 3.007635 CTCCTTAAATGTCCGGGTTGTC 58.992 50.000 0.00 0.00 0.00 3.18
508 511 2.640826 TCTCCTTAAATGTCCGGGTTGT 59.359 45.455 0.00 0.00 0.00 3.32
509 512 3.007635 GTCTCCTTAAATGTCCGGGTTG 58.992 50.000 0.00 0.00 0.00 3.77
510 513 2.910977 AGTCTCCTTAAATGTCCGGGTT 59.089 45.455 0.00 0.00 0.00 4.11
511 514 2.547990 AGTCTCCTTAAATGTCCGGGT 58.452 47.619 0.00 0.00 0.00 5.28
512 515 3.629142 AAGTCTCCTTAAATGTCCGGG 57.371 47.619 0.00 0.00 0.00 5.73
513 516 4.575885 TCAAAGTCTCCTTAAATGTCCGG 58.424 43.478 0.00 0.00 0.00 5.14
514 517 4.631813 CCTCAAAGTCTCCTTAAATGTCCG 59.368 45.833 0.00 0.00 0.00 4.79
515 518 4.944317 CCCTCAAAGTCTCCTTAAATGTCC 59.056 45.833 0.00 0.00 0.00 4.02
516 519 5.805728 TCCCTCAAAGTCTCCTTAAATGTC 58.194 41.667 0.00 0.00 0.00 3.06
517 520 5.843019 TCCCTCAAAGTCTCCTTAAATGT 57.157 39.130 0.00 0.00 0.00 2.71
518 521 5.825151 GGATCCCTCAAAGTCTCCTTAAATG 59.175 44.000 0.00 0.00 0.00 2.32
519 522 5.396884 CGGATCCCTCAAAGTCTCCTTAAAT 60.397 44.000 6.06 0.00 0.00 1.40
520 523 4.081087 CGGATCCCTCAAAGTCTCCTTAAA 60.081 45.833 6.06 0.00 0.00 1.52
521 524 3.451178 CGGATCCCTCAAAGTCTCCTTAA 59.549 47.826 6.06 0.00 0.00 1.85
522 525 3.031736 CGGATCCCTCAAAGTCTCCTTA 58.968 50.000 6.06 0.00 0.00 2.69
523 526 1.834263 CGGATCCCTCAAAGTCTCCTT 59.166 52.381 6.06 0.00 0.00 3.36
524 527 1.490574 CGGATCCCTCAAAGTCTCCT 58.509 55.000 6.06 0.00 0.00 3.69
525 528 0.466124 CCGGATCCCTCAAAGTCTCC 59.534 60.000 6.06 0.00 0.00 3.71
526 529 0.179070 GCCGGATCCCTCAAAGTCTC 60.179 60.000 5.05 0.00 0.00 3.36
527 530 0.618968 AGCCGGATCCCTCAAAGTCT 60.619 55.000 5.05 0.00 0.00 3.24
528 531 0.462759 CAGCCGGATCCCTCAAAGTC 60.463 60.000 5.05 0.00 0.00 3.01
529 532 1.604378 CAGCCGGATCCCTCAAAGT 59.396 57.895 5.05 0.00 0.00 2.66
530 533 1.153086 CCAGCCGGATCCCTCAAAG 60.153 63.158 5.05 0.00 0.00 2.77
531 534 2.679342 CCCAGCCGGATCCCTCAAA 61.679 63.158 5.05 0.00 0.00 2.69
532 535 3.089874 CCCAGCCGGATCCCTCAA 61.090 66.667 5.05 0.00 0.00 3.02
533 536 4.414956 ACCCAGCCGGATCCCTCA 62.415 66.667 5.05 0.00 34.64 3.86
534 537 3.551407 GACCCAGCCGGATCCCTC 61.551 72.222 5.05 0.00 34.64 4.30
535 538 3.943137 TTGACCCAGCCGGATCCCT 62.943 63.158 5.05 0.00 34.64 4.20
536 539 3.407967 TTGACCCAGCCGGATCCC 61.408 66.667 5.05 0.00 34.64 3.85
537 540 2.124695 GTTGACCCAGCCGGATCC 60.125 66.667 5.05 0.00 34.64 3.36
538 541 2.124695 GGTTGACCCAGCCGGATC 60.125 66.667 5.05 0.00 34.64 3.36
539 542 1.789576 AAAGGTTGACCCAGCCGGAT 61.790 55.000 5.05 0.00 39.74 4.18
540 543 2.002018 AAAAGGTTGACCCAGCCGGA 62.002 55.000 5.05 0.00 39.74 5.14
541 544 1.530655 AAAAGGTTGACCCAGCCGG 60.531 57.895 0.00 0.00 39.74 6.13
542 545 1.659794 CAAAAGGTTGACCCAGCCG 59.340 57.895 0.00 0.00 39.74 5.52
543 546 1.115326 AGCAAAAGGTTGACCCAGCC 61.115 55.000 0.00 0.00 36.83 4.85
544 547 0.752658 AAGCAAAAGGTTGACCCAGC 59.247 50.000 0.00 0.00 36.83 4.85
545 548 2.294512 GAGAAGCAAAAGGTTGACCCAG 59.705 50.000 0.00 0.00 36.83 4.45
546 549 2.091885 AGAGAAGCAAAAGGTTGACCCA 60.092 45.455 0.00 0.00 36.83 4.51
547 550 2.554462 GAGAGAAGCAAAAGGTTGACCC 59.446 50.000 0.00 0.00 36.83 4.46
548 551 3.481453 AGAGAGAAGCAAAAGGTTGACC 58.519 45.455 0.00 0.00 36.83 4.02
549 552 3.500299 GGAGAGAGAAGCAAAAGGTTGAC 59.500 47.826 0.00 0.00 36.83 3.18
550 553 3.392616 AGGAGAGAGAAGCAAAAGGTTGA 59.607 43.478 0.00 0.00 36.83 3.18
551 554 3.501445 CAGGAGAGAGAAGCAAAAGGTTG 59.499 47.826 0.00 0.00 37.83 3.77
552 555 3.137360 ACAGGAGAGAGAAGCAAAAGGTT 59.863 43.478 0.00 0.00 0.00 3.50
553 556 2.708325 ACAGGAGAGAGAAGCAAAAGGT 59.292 45.455 0.00 0.00 0.00 3.50
554 557 3.333804 GACAGGAGAGAGAAGCAAAAGG 58.666 50.000 0.00 0.00 0.00 3.11
555 558 3.333804 GGACAGGAGAGAGAAGCAAAAG 58.666 50.000 0.00 0.00 0.00 2.27
556 559 2.289072 CGGACAGGAGAGAGAAGCAAAA 60.289 50.000 0.00 0.00 0.00 2.44
557 560 1.273606 CGGACAGGAGAGAGAAGCAAA 59.726 52.381 0.00 0.00 0.00 3.68
558 561 0.891373 CGGACAGGAGAGAGAAGCAA 59.109 55.000 0.00 0.00 0.00 3.91
559 562 0.967887 CCGGACAGGAGAGAGAAGCA 60.968 60.000 0.00 0.00 45.00 3.91
560 563 0.968393 ACCGGACAGGAGAGAGAAGC 60.968 60.000 9.46 0.00 45.00 3.86
561 564 1.099689 GACCGGACAGGAGAGAGAAG 58.900 60.000 9.46 0.00 45.00 2.85
562 565 0.404426 TGACCGGACAGGAGAGAGAA 59.596 55.000 9.46 0.00 45.00 2.87
563 566 0.404426 TTGACCGGACAGGAGAGAGA 59.596 55.000 9.46 0.00 45.00 3.10
564 567 1.479709 ATTGACCGGACAGGAGAGAG 58.520 55.000 9.46 0.00 45.00 3.20
565 568 1.550524 CAATTGACCGGACAGGAGAGA 59.449 52.381 9.46 0.00 45.00 3.10
566 569 1.276421 ACAATTGACCGGACAGGAGAG 59.724 52.381 13.59 0.26 45.00 3.20
567 570 1.275291 GACAATTGACCGGACAGGAGA 59.725 52.381 13.59 0.00 45.00 3.71
568 571 1.676014 GGACAATTGACCGGACAGGAG 60.676 57.143 13.59 4.14 45.00 3.69
569 572 0.323629 GGACAATTGACCGGACAGGA 59.676 55.000 13.59 0.00 45.00 3.86
571 574 0.324943 AGGGACAATTGACCGGACAG 59.675 55.000 18.64 0.00 0.00 3.51
572 575 1.276989 GTAGGGACAATTGACCGGACA 59.723 52.381 18.64 5.04 0.00 4.02
573 576 1.276989 TGTAGGGACAATTGACCGGAC 59.723 52.381 18.64 17.82 30.68 4.79
574 577 1.646912 TGTAGGGACAATTGACCGGA 58.353 50.000 18.64 7.87 30.68 5.14
575 578 2.710096 ATGTAGGGACAATTGACCGG 57.290 50.000 18.64 0.00 39.59 5.28
576 579 2.607635 CGAATGTAGGGACAATTGACCG 59.392 50.000 18.64 3.30 39.59 4.79
577 580 3.621715 GTCGAATGTAGGGACAATTGACC 59.378 47.826 17.36 17.36 41.37 4.02
578 581 3.621715 GGTCGAATGTAGGGACAATTGAC 59.378 47.826 13.59 5.81 44.43 3.18
579 582 3.677700 CGGTCGAATGTAGGGACAATTGA 60.678 47.826 13.59 0.00 39.59 2.57
580 583 2.607635 CGGTCGAATGTAGGGACAATTG 59.392 50.000 3.24 3.24 39.59 2.32
581 584 2.419574 CCGGTCGAATGTAGGGACAATT 60.420 50.000 0.00 0.00 39.59 2.32
582 585 1.138266 CCGGTCGAATGTAGGGACAAT 59.862 52.381 0.00 0.00 39.59 2.71
583 586 0.533491 CCGGTCGAATGTAGGGACAA 59.467 55.000 0.00 0.00 39.59 3.18
584 587 0.612732 ACCGGTCGAATGTAGGGACA 60.613 55.000 0.00 0.00 40.72 4.02
585 588 0.101939 GACCGGTCGAATGTAGGGAC 59.898 60.000 20.85 0.00 0.00 4.46
586 589 0.323633 TGACCGGTCGAATGTAGGGA 60.324 55.000 28.70 4.91 0.00 4.20
587 590 0.533491 TTGACCGGTCGAATGTAGGG 59.467 55.000 28.70 0.00 0.00 3.53
588 591 2.596904 ATTGACCGGTCGAATGTAGG 57.403 50.000 28.11 0.00 0.00 3.18
589 592 3.930229 TCAAATTGACCGGTCGAATGTAG 59.070 43.478 28.11 18.75 0.00 2.74
590 593 3.927854 TCAAATTGACCGGTCGAATGTA 58.072 40.909 28.11 15.63 0.00 2.29
591 594 2.742053 CTCAAATTGACCGGTCGAATGT 59.258 45.455 28.11 19.59 0.00 2.71
592 595 2.095853 CCTCAAATTGACCGGTCGAATG 59.904 50.000 28.11 26.19 0.00 2.67
593 596 2.027561 TCCTCAAATTGACCGGTCGAAT 60.028 45.455 28.11 23.32 0.00 3.34
594 597 1.345089 TCCTCAAATTGACCGGTCGAA 59.655 47.619 28.11 22.23 0.00 3.71
595 598 0.970640 TCCTCAAATTGACCGGTCGA 59.029 50.000 26.70 26.70 0.00 4.20
596 599 1.337823 ACTCCTCAAATTGACCGGTCG 60.338 52.381 28.70 14.65 0.00 4.79
597 600 2.347731 GACTCCTCAAATTGACCGGTC 58.652 52.381 28.17 28.17 0.00 4.79
598 601 1.003233 GGACTCCTCAAATTGACCGGT 59.997 52.381 6.92 6.92 0.00 5.28
599 602 1.003118 TGGACTCCTCAAATTGACCGG 59.997 52.381 0.00 0.00 0.00 5.28
600 603 2.289694 ACTGGACTCCTCAAATTGACCG 60.290 50.000 0.00 0.00 0.00 4.79
601 604 3.425162 ACTGGACTCCTCAAATTGACC 57.575 47.619 0.00 0.00 0.00 4.02
602 605 4.137543 ACAACTGGACTCCTCAAATTGAC 58.862 43.478 0.00 0.00 0.00 3.18
603 606 4.437682 ACAACTGGACTCCTCAAATTGA 57.562 40.909 0.00 0.00 0.00 2.57
604 607 5.551233 TCTACAACTGGACTCCTCAAATTG 58.449 41.667 0.00 0.00 0.00 2.32
605 608 5.825593 TCTACAACTGGACTCCTCAAATT 57.174 39.130 0.00 0.00 0.00 1.82
606 609 5.738909 CATCTACAACTGGACTCCTCAAAT 58.261 41.667 0.00 0.00 0.00 2.32
607 610 4.563580 GCATCTACAACTGGACTCCTCAAA 60.564 45.833 0.00 0.00 0.00 2.69
608 611 3.055819 GCATCTACAACTGGACTCCTCAA 60.056 47.826 0.00 0.00 0.00 3.02
609 612 2.497675 GCATCTACAACTGGACTCCTCA 59.502 50.000 0.00 0.00 0.00 3.86
610 613 2.763448 AGCATCTACAACTGGACTCCTC 59.237 50.000 0.00 0.00 0.00 3.71
611 614 2.763448 GAGCATCTACAACTGGACTCCT 59.237 50.000 0.00 0.00 0.00 3.69
612 615 3.172229 GAGCATCTACAACTGGACTCC 57.828 52.381 0.00 0.00 0.00 3.85
618 621 8.105736 CTGGAAGAGTTAGAGCATCTACAACTG 61.106 44.444 0.81 0.00 42.42 3.16
619 622 6.127479 CTGGAAGAGTTAGAGCATCTACAACT 60.127 42.308 0.00 0.00 44.39 3.16
620 623 6.039616 CTGGAAGAGTTAGAGCATCTACAAC 58.960 44.000 0.00 0.00 42.57 3.32
621 624 5.717178 ACTGGAAGAGTTAGAGCATCTACAA 59.283 40.000 0.00 0.00 42.87 2.41
622 625 5.265191 ACTGGAAGAGTTAGAGCATCTACA 58.735 41.667 0.00 0.00 42.87 2.74
623 626 5.845391 ACTGGAAGAGTTAGAGCATCTAC 57.155 43.478 0.00 0.00 42.87 2.59
624 627 6.404844 CGAAACTGGAAGAGTTAGAGCATCTA 60.405 42.308 0.00 0.00 44.52 1.98
625 628 5.623368 CGAAACTGGAAGAGTTAGAGCATCT 60.623 44.000 0.00 0.00 44.68 2.90
626 629 4.564769 CGAAACTGGAAGAGTTAGAGCATC 59.435 45.833 0.00 0.00 44.68 3.91
627 630 4.499183 CGAAACTGGAAGAGTTAGAGCAT 58.501 43.478 0.00 0.00 44.68 3.79
628 631 3.861131 GCGAAACTGGAAGAGTTAGAGCA 60.861 47.826 0.00 0.00 44.68 4.26
629 632 2.668945 GCGAAACTGGAAGAGTTAGAGC 59.331 50.000 0.00 0.00 44.68 4.09
630 633 3.914312 TGCGAAACTGGAAGAGTTAGAG 58.086 45.455 0.00 0.00 44.68 2.43
631 634 4.495422 GATGCGAAACTGGAAGAGTTAGA 58.505 43.478 0.00 0.00 44.68 2.10
646 649 2.033424 CAGAGACTACGATGGATGCGAA 59.967 50.000 0.00 0.00 0.00 4.70
677 680 0.836400 ACGGAGACAAGGTGGGACAT 60.836 55.000 0.00 0.00 44.52 3.06
716 719 3.614399 CCATCGATAGGGCAGGAAC 57.386 57.895 0.00 0.00 0.00 3.62
726 729 6.852858 TTGTTGATATTTTCGCCATCGATA 57.147 33.333 0.00 0.00 45.04 2.92
782 785 3.957497 TGTGTTTTTGTGGAAGGTATGCT 59.043 39.130 0.00 0.00 0.00 3.79
841 844 6.382282 TCTGTGAGTGAGAATTATGTGGATCT 59.618 38.462 0.00 0.00 0.00 2.75
940 970 3.648067 TGATTGGGGTCATCAGTAGGATC 59.352 47.826 0.00 0.00 32.57 3.36
1073 1109 1.747924 GCTTGGAAGAAGATGGGAAGC 59.252 52.381 0.00 0.00 0.00 3.86
1075 1111 1.710244 TGGCTTGGAAGAAGATGGGAA 59.290 47.619 0.00 0.00 0.00 3.97
1080 1116 0.700564 TGGCTGGCTTGGAAGAAGAT 59.299 50.000 2.00 0.00 0.00 2.40
1081 1117 0.700564 ATGGCTGGCTTGGAAGAAGA 59.299 50.000 2.00 0.00 0.00 2.87
1082 1118 0.815734 CATGGCTGGCTTGGAAGAAG 59.184 55.000 8.95 0.00 0.00 2.85
1084 1120 1.000521 CCATGGCTGGCTTGGAAGA 60.001 57.895 25.96 0.00 35.23 2.87
1085 1121 0.396695 ATCCATGGCTGGCTTGGAAG 60.397 55.000 32.55 12.46 42.53 3.46
1491 1543 2.191375 CCCGCCATGATGAGCTGT 59.809 61.111 0.00 0.00 0.00 4.40
2533 2870 4.643387 GTGGCCAGGCACGGTCTT 62.643 66.667 15.19 0.00 0.00 3.01
2668 3012 0.902984 TGTGGCCGAGACATGTAGGT 60.903 55.000 0.00 0.00 0.00 3.08
2675 3019 2.416296 CGTATACTTTGTGGCCGAGACA 60.416 50.000 0.00 0.00 0.00 3.41
2699 3043 6.896613 CGTGTAGCTACGTTACATATATACGG 59.103 42.308 18.74 1.11 39.45 4.02
3073 3430 2.716814 GCTACGGGCTACTGCTAGA 58.283 57.895 0.00 0.00 39.59 2.43
3085 3442 0.885596 CTCTCCCGGTCTAGCTACGG 60.886 65.000 13.00 13.00 46.79 4.02
3088 3445 1.150992 GCCTCTCCCGGTCTAGCTA 59.849 63.158 0.00 0.00 0.00 3.32
3089 3446 2.123640 GCCTCTCCCGGTCTAGCT 60.124 66.667 0.00 0.00 0.00 3.32
3137 3495 0.458669 TATCTGACTCCGGCCGTTTC 59.541 55.000 26.12 17.04 0.00 2.78
3339 3953 9.898152 TGTTGGGAAAGTTGAATTATTCTTTTT 57.102 25.926 6.50 4.52 31.56 1.94
3340 3954 9.898152 TTGTTGGGAAAGTTGAATTATTCTTTT 57.102 25.926 6.50 4.83 31.56 2.27
3342 3956 9.492973 CATTGTTGGGAAAGTTGAATTATTCTT 57.507 29.630 6.50 0.00 0.00 2.52
3343 3957 8.650490 ACATTGTTGGGAAAGTTGAATTATTCT 58.350 29.630 6.50 0.00 0.00 2.40
3344 3958 8.831715 ACATTGTTGGGAAAGTTGAATTATTC 57.168 30.769 0.00 0.00 0.00 1.75
3345 3959 9.625747 AAACATTGTTGGGAAAGTTGAATTATT 57.374 25.926 2.13 0.00 0.00 1.40
3346 3960 9.054922 CAAACATTGTTGGGAAAGTTGAATTAT 57.945 29.630 2.13 0.00 0.00 1.28
3347 3961 7.497249 CCAAACATTGTTGGGAAAGTTGAATTA 59.503 33.333 16.82 0.00 43.79 1.40
3488 4107 1.894756 TTCGTCGGCAACAAAGGGG 60.895 57.895 0.00 0.00 0.00 4.79
3526 4145 4.502950 GGGAGCATAGAGATTGGTCAGAAG 60.503 50.000 5.39 0.00 42.06 2.85
3616 4239 1.372997 CAGAACAGTCGTGTCCCGG 60.373 63.158 0.00 0.00 35.08 5.73
3621 4244 1.611977 TCGGAATCAGAACAGTCGTGT 59.388 47.619 0.00 0.00 39.19 4.49


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.