Multiple sequence alignment - TraesCS4D01G336500
Loading Multiple Alignment...
BLAST Results
BLAST Results - Input Sequence
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this
to extract flanking regions for cloning. If the result of the multiple sequence alignment is
not as expected, these results could be used for further investigation.
qseqid
sseqid
percentage.identical
alignment.length
no.mismatch
no.gap.openings
qstart
qend
sstart
send
evalue
bitscore
0
TraesCS4D01G336500
chr4D
100.000
3847
0
0
1
3847
494122305
494118459
0.000000e+00
7105
1
TraesCS4D01G336500
chr4B
95.123
3322
130
16
548
3847
633633018
633629707
0.000000e+00
5208
2
TraesCS4D01G336500
chr4B
92.505
467
20
10
1
464
633633547
633633093
0.000000e+00
654
3
TraesCS4D01G336500
chr4B
95.652
46
2
0
462
507
633633060
633633015
1.480000e-09
75
4
TraesCS4D01G336500
chr5A
93.878
3218
134
20
1
3179
673711713
673708520
0.000000e+00
4793
5
TraesCS4D01G336500
chr5A
92.833
600
33
4
3254
3847
673708476
673707881
0.000000e+00
861
6
TraesCS4D01G336500
chr5A
86.944
337
36
5
46
374
134468452
134468788
4.690000e-99
372
7
TraesCS4D01G336500
chr7A
87.240
337
35
5
46
374
616266860
616267196
1.010000e-100
377
8
TraesCS4D01G336500
chr4A
87.240
337
35
5
46
374
480317052
480317388
1.010000e-100
377
9
TraesCS4D01G336500
chr4A
87.240
337
35
5
46
374
499693480
499693144
1.010000e-100
377
10
TraesCS4D01G336500
chr4A
86.647
337
37
5
46
374
287264949
287265285
2.180000e-97
366
11
TraesCS4D01G336500
chr4A
78.906
256
27
10
2924
3179
228102803
228102575
8.610000e-32
148
12
TraesCS4D01G336500
chr2A
86.944
337
36
5
46
374
198778074
198778410
4.690000e-99
372
13
TraesCS4D01G336500
chr1A
86.647
337
37
5
46
374
467435698
467436034
2.180000e-97
366
14
TraesCS4D01G336500
chr6B
87.023
131
9
5
2924
3054
430909455
430909333
1.440000e-29
141
BLAST Results - HSPs grouped
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the
BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are
purely upstream or downstream may be removed if they don't overlap both primers.
query
scaffold
start
end
length
rev.comp
avg.bitscore
max.bitscore
avg.percent.identical
query.start
query.end
num_hsp
groupid
homo_length
0
TraesCS4D01G336500
chr4D
494118459
494122305
3846
True
7105
7105
100.000000
1
3847
1
chr4D.!!$R1
3846
1
TraesCS4D01G336500
chr4B
633629707
633633547
3840
True
1979
5208
94.426667
1
3847
3
chr4B.!!$R1
3846
2
TraesCS4D01G336500
chr5A
673707881
673711713
3832
True
2827
4793
93.355500
1
3847
2
chr5A.!!$R1
3846
AutoCloner calculated primer pairs
These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3),
whilst remaining within the specified product range where possible.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
515
557
0.463204
TGGCCAACACAAACACATGG
59.537
50.0
0.61
0.0
0.00
3.66
F
516
558
0.463620
GGCCAACACAAACACATGGT
59.536
50.0
0.00
0.0
33.63
3.55
F
1684
1766
1.188219
TCAGCCTGGTCTGTCCTCAC
61.188
60.0
14.79
0.0
35.63
3.51
F
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
1684
1766
1.213678
AGATGATGATGGTGGTGGGTG
59.786
52.381
0.00
0.0
0.00
4.61
R
1773
1855
1.436195
CGGTGTACATCGCCATTGGG
61.436
60.000
16.71
0.0
46.24
4.12
R
3660
3771
0.032678
CGAATCTGCTCGGCCTGTAT
59.967
55.000
0.00
0.0
35.14
2.29
R
All possible primers
Listed here are all possible primers based on the multiple sequence alignment and SNPs generated
previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work
during PCR or sequencing,
these could be used as alternatives.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
97
99
6.148315
TGTTCTTGCTTGTACATCAATCTCTG
59.852
38.462
10.33
1.76
35.35
3.35
120
122
4.149396
GCTTCAAGTGCTGCATTTACTTTG
59.851
41.667
10.15
6.80
32.69
2.77
121
123
4.916983
TCAAGTGCTGCATTTACTTTGT
57.083
36.364
10.15
0.00
32.69
2.83
122
124
5.261209
TCAAGTGCTGCATTTACTTTGTT
57.739
34.783
10.15
0.00
32.69
2.83
123
125
5.280945
TCAAGTGCTGCATTTACTTTGTTC
58.719
37.500
10.15
0.00
32.69
3.18
124
126
4.243007
AGTGCTGCATTTACTTTGTTCC
57.757
40.909
5.27
0.00
0.00
3.62
125
127
3.891366
AGTGCTGCATTTACTTTGTTCCT
59.109
39.130
5.27
0.00
0.00
3.36
132
134
6.058833
TGCATTTACTTTGTTCCTACAGTCA
58.941
36.000
0.00
0.00
35.28
3.41
133
135
6.544197
TGCATTTACTTTGTTCCTACAGTCAA
59.456
34.615
0.00
0.00
35.28
3.18
140
142
1.737793
GTTCCTACAGTCAAATGCCCG
59.262
52.381
0.00
0.00
0.00
6.13
152
154
1.033746
AATGCCCGATGCTTCAGTGG
61.034
55.000
0.08
0.00
42.00
4.00
153
155
3.512516
GCCCGATGCTTCAGTGGC
61.513
66.667
8.43
8.43
36.87
5.01
201
203
8.331740
TCCACTTGGTAGTAGTACAGTTAGTAT
58.668
37.037
9.89
0.00
34.03
2.12
202
204
8.964772
CCACTTGGTAGTAGTACAGTTAGTATT
58.035
37.037
9.89
0.00
31.84
1.89
284
286
3.808174
GGTACCGTTTTCATGGATAGAGC
59.192
47.826
0.00
0.00
32.58
4.09
318
320
6.475727
CGATCTTACGGAGAGAAAGCATTAAA
59.524
38.462
0.00
0.00
37.93
1.52
337
339
2.955342
ATTTTTGCCCAATTGGTGCT
57.045
40.000
27.53
12.55
36.04
4.40
466
508
1.266989
GGCAGTTTGTGTGTAAGCCTC
59.733
52.381
0.00
0.00
37.67
4.70
503
545
5.812127
GGATGTTTCATAGAAAATGGCCAAC
59.188
40.000
10.96
0.00
0.00
3.77
504
546
5.798125
TGTTTCATAGAAAATGGCCAACA
57.202
34.783
10.96
1.04
0.00
3.33
505
547
5.537188
TGTTTCATAGAAAATGGCCAACAC
58.463
37.500
10.96
1.51
0.00
3.32
506
548
5.069648
TGTTTCATAGAAAATGGCCAACACA
59.930
36.000
10.96
0.00
0.00
3.72
507
549
5.798125
TTCATAGAAAATGGCCAACACAA
57.202
34.783
10.96
0.00
0.00
3.33
508
550
5.798125
TCATAGAAAATGGCCAACACAAA
57.202
34.783
10.96
0.00
0.00
2.83
509
551
5.537188
TCATAGAAAATGGCCAACACAAAC
58.463
37.500
10.96
0.00
0.00
2.93
510
552
3.902881
AGAAAATGGCCAACACAAACA
57.097
38.095
10.96
0.00
0.00
2.83
511
553
3.530535
AGAAAATGGCCAACACAAACAC
58.469
40.909
10.96
0.00
0.00
3.32
512
554
3.055530
AGAAAATGGCCAACACAAACACA
60.056
39.130
10.96
0.00
0.00
3.72
513
555
3.557228
AAATGGCCAACACAAACACAT
57.443
38.095
10.96
0.00
0.00
3.21
514
556
2.529780
ATGGCCAACACAAACACATG
57.470
45.000
10.96
0.00
0.00
3.21
515
557
0.463204
TGGCCAACACAAACACATGG
59.537
50.000
0.61
0.00
0.00
3.66
516
558
0.463620
GGCCAACACAAACACATGGT
59.536
50.000
0.00
0.00
33.63
3.55
517
559
1.537990
GGCCAACACAAACACATGGTC
60.538
52.381
0.00
0.00
33.63
4.02
518
560
1.408702
GCCAACACAAACACATGGTCT
59.591
47.619
0.00
0.00
33.63
3.85
519
561
2.159114
GCCAACACAAACACATGGTCTT
60.159
45.455
0.00
0.00
33.63
3.01
520
562
3.705604
CCAACACAAACACATGGTCTTC
58.294
45.455
0.00
0.00
0.00
2.87
521
563
3.381272
CCAACACAAACACATGGTCTTCT
59.619
43.478
0.00
0.00
0.00
2.85
522
564
4.498009
CCAACACAAACACATGGTCTTCTC
60.498
45.833
0.00
0.00
0.00
2.87
523
565
4.156455
ACACAAACACATGGTCTTCTCT
57.844
40.909
0.00
0.00
0.00
3.10
524
566
4.130118
ACACAAACACATGGTCTTCTCTC
58.870
43.478
0.00
0.00
0.00
3.20
525
567
4.141620
ACACAAACACATGGTCTTCTCTCT
60.142
41.667
0.00
0.00
0.00
3.10
526
568
4.818546
CACAAACACATGGTCTTCTCTCTT
59.181
41.667
0.00
0.00
0.00
2.85
527
569
5.049818
CACAAACACATGGTCTTCTCTCTTC
60.050
44.000
0.00
0.00
0.00
2.87
528
570
5.163258
ACAAACACATGGTCTTCTCTCTTCT
60.163
40.000
0.00
0.00
0.00
2.85
529
571
5.559148
AACACATGGTCTTCTCTCTTCTT
57.441
39.130
0.00
0.00
0.00
2.52
530
572
5.146010
ACACATGGTCTTCTCTCTTCTTC
57.854
43.478
0.00
0.00
0.00
2.87
531
573
4.837860
ACACATGGTCTTCTCTCTTCTTCT
59.162
41.667
0.00
0.00
0.00
2.85
532
574
5.306678
ACACATGGTCTTCTCTCTTCTTCTT
59.693
40.000
0.00
0.00
0.00
2.52
533
575
6.183361
ACACATGGTCTTCTCTCTTCTTCTTT
60.183
38.462
0.00
0.00
0.00
2.52
534
576
6.709846
CACATGGTCTTCTCTCTTCTTCTTTT
59.290
38.462
0.00
0.00
0.00
2.27
535
577
7.228308
CACATGGTCTTCTCTCTTCTTCTTTTT
59.772
37.037
0.00
0.00
0.00
1.94
1011
1093
1.734137
GGCGAAGATGGAGCTCGTA
59.266
57.895
7.83
0.00
0.00
3.43
1026
1108
4.962155
AGCTCGTATATTTGGAAAGGAGG
58.038
43.478
0.00
0.00
0.00
4.30
1029
1111
5.236695
GCTCGTATATTTGGAAAGGAGGAAC
59.763
44.000
0.00
0.00
0.00
3.62
1113
1195
2.730094
CTGCCAGTTGTTGCACCC
59.270
61.111
0.00
0.00
33.17
4.61
1581
1663
4.833495
TCCCCCGGGGCATCATCA
62.833
66.667
36.20
7.82
43.94
3.07
1641
1723
4.314440
ACGGCGCCTTCTTGCTCA
62.314
61.111
26.68
0.00
0.00
4.26
1684
1766
1.188219
TCAGCCTGGTCTGTCCTCAC
61.188
60.000
14.79
0.00
35.63
3.51
1791
1873
0.393808
ACCCAATGGCGATGTACACC
60.394
55.000
0.00
0.00
33.59
4.16
1975
2060
2.266055
GCTCAGACGGGTCAAGGG
59.734
66.667
1.17
0.00
0.00
3.95
2388
2473
7.134362
TCATTCAGAGAGCAGGAATAAGAAT
57.866
36.000
0.00
0.00
30.53
2.40
2424
2509
1.299648
CGCCATTGTCCCAAGAGGA
59.700
57.895
3.30
0.00
44.91
3.71
2451
2536
3.804193
GGCGCGGCTTCCAAGAAG
61.804
66.667
27.05
0.00
0.00
2.85
2586
2674
2.046892
CCTGAGGACGGTGCCAAG
60.047
66.667
0.00
0.00
0.00
3.61
2632
2722
4.778534
AGCACAATTCAGACAGGATTTG
57.221
40.909
0.00
0.00
35.40
2.32
2653
2743
0.944386
TGTTTCAGAAGAAGCGGCAC
59.056
50.000
1.45
0.00
37.74
5.01
2672
2763
3.670627
GCACATTGTTCATCTCCGTTTCC
60.671
47.826
0.00
0.00
0.00
3.13
2676
2767
2.985896
TGTTCATCTCCGTTTCCATCC
58.014
47.619
0.00
0.00
0.00
3.51
2681
2772
4.599041
TCATCTCCGTTTCCATCCAATTT
58.401
39.130
0.00
0.00
0.00
1.82
2850
2941
1.286553
TCCACCCAAAACTGTGAACCT
59.713
47.619
0.00
0.00
0.00
3.50
2915
3006
8.127150
TGTTGACTTTATCTTGAGAGAGATGA
57.873
34.615
0.00
0.00
37.01
2.92
3198
3303
5.921976
TGCTGCTCAAAACTAAAATCATGTG
59.078
36.000
0.00
0.00
0.00
3.21
3199
3304
5.164022
GCTGCTCAAAACTAAAATCATGTGC
60.164
40.000
0.00
0.00
0.00
4.57
3234
3339
1.357690
CATACGGCGGCGACTTCTA
59.642
57.895
38.93
19.63
0.00
2.10
3246
3351
6.183360
GGCGGCGACTTCTATATAATAACAAC
60.183
42.308
12.98
0.00
0.00
3.32
3294
3399
6.094742
CCCAATAAAACAAAATTATGGTGGCC
59.905
38.462
0.00
0.00
0.00
5.36
3340
3445
4.669318
ACACGGTTTACAGATACTCATCG
58.331
43.478
0.00
0.00
36.20
3.84
3347
3452
6.700081
GGTTTACAGATACTCATCGCATGTAA
59.300
38.462
0.00
0.00
36.20
2.41
3466
3571
9.878737
ATCTGAGGAGAAAATATGGATCAAAAT
57.121
29.630
0.00
0.00
0.00
1.82
3569
3674
3.982829
GTTCTTCAGGAACGGGGC
58.017
61.111
0.00
0.00
43.75
5.80
3642
3753
0.885596
CCGCTTGTTCCGGTAACCAA
60.886
55.000
0.00
0.00
40.84
3.67
3660
3771
0.602638
AACTTGATTCGGTGAGCGCA
60.603
50.000
11.47
0.00
0.00
6.09
3678
3789
1.506493
CATACAGGCCGAGCAGATTC
58.494
55.000
0.00
0.00
0.00
2.52
3687
3798
1.328439
CGAGCAGATTCGCGTATACC
58.672
55.000
5.77
0.00
36.85
2.73
3750
3861
1.001633
TCGGTTTTCCCCTCTTTCTCG
59.998
52.381
0.00
0.00
36.42
4.04
3819
3930
0.304705
AGTTCTGCAACAACGCTTCG
59.695
50.000
3.20
0.00
34.60
3.79
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
97
99
3.565905
AGTAAATGCAGCACTTGAAGC
57.434
42.857
0.00
0.00
0.00
3.86
120
122
1.737793
CGGGCATTTGACTGTAGGAAC
59.262
52.381
0.00
0.00
0.00
3.62
121
123
1.626321
TCGGGCATTTGACTGTAGGAA
59.374
47.619
0.00
0.00
0.00
3.36
122
124
1.271856
TCGGGCATTTGACTGTAGGA
58.728
50.000
0.00
0.00
0.00
2.94
123
125
1.942657
CATCGGGCATTTGACTGTAGG
59.057
52.381
0.00
0.00
0.00
3.18
124
126
1.331756
GCATCGGGCATTTGACTGTAG
59.668
52.381
0.00
0.00
43.97
2.74
125
127
1.378531
GCATCGGGCATTTGACTGTA
58.621
50.000
0.00
0.00
43.97
2.74
140
142
1.239296
TGCACTGCCACTGAAGCATC
61.239
55.000
0.00
0.00
40.04
3.91
152
154
2.424601
TCCATTGCTTAGAATGCACTGC
59.575
45.455
0.00
0.00
40.40
4.40
153
155
3.693085
AGTCCATTGCTTAGAATGCACTG
59.307
43.478
0.00
0.00
33.82
3.66
318
320
2.506444
CAGCACCAATTGGGCAAAAAT
58.494
42.857
28.57
13.01
42.05
1.82
337
339
1.278985
CCCACAAGTACCATCTCAGCA
59.721
52.381
0.00
0.00
0.00
4.41
466
508
6.845758
ATGAAACATCCTATGCCCAATATG
57.154
37.500
0.00
0.00
0.00
1.78
503
545
4.384056
AGAGAGAAGACCATGTGTTTGTG
58.616
43.478
0.00
0.00
0.00
3.33
504
546
4.696479
AGAGAGAAGACCATGTGTTTGT
57.304
40.909
0.00
0.00
0.00
2.83
505
547
5.303971
AGAAGAGAGAAGACCATGTGTTTG
58.696
41.667
0.00
0.00
0.00
2.93
506
548
5.559148
AGAAGAGAGAAGACCATGTGTTT
57.441
39.130
0.00
0.00
0.00
2.83
507
549
5.306678
AGAAGAAGAGAGAAGACCATGTGTT
59.693
40.000
0.00
0.00
0.00
3.32
508
550
4.837860
AGAAGAAGAGAGAAGACCATGTGT
59.162
41.667
0.00
0.00
0.00
3.72
509
551
5.404466
AGAAGAAGAGAGAAGACCATGTG
57.596
43.478
0.00
0.00
0.00
3.21
510
552
6.432403
AAAGAAGAAGAGAGAAGACCATGT
57.568
37.500
0.00
0.00
0.00
3.21
511
553
7.742556
AAAAAGAAGAAGAGAGAAGACCATG
57.257
36.000
0.00
0.00
0.00
3.66
539
581
3.706594
GGAGAGGTCCATGTGAGTTATCA
59.293
47.826
0.00
0.00
43.31
2.15
540
582
3.964031
AGGAGAGGTCCATGTGAGTTATC
59.036
47.826
0.00
0.00
46.80
1.75
541
583
3.708631
CAGGAGAGGTCCATGTGAGTTAT
59.291
47.826
0.00
0.00
46.80
1.89
542
584
3.099905
CAGGAGAGGTCCATGTGAGTTA
58.900
50.000
0.00
0.00
46.80
2.24
543
585
1.905215
CAGGAGAGGTCCATGTGAGTT
59.095
52.381
0.00
0.00
46.80
3.01
544
586
1.566211
CAGGAGAGGTCCATGTGAGT
58.434
55.000
0.00
0.00
46.80
3.41
545
587
0.829333
CCAGGAGAGGTCCATGTGAG
59.171
60.000
0.00
0.00
46.80
3.51
546
588
1.267574
GCCAGGAGAGGTCCATGTGA
61.268
60.000
0.00
0.00
46.80
3.58
1011
1093
4.855298
TCCGTTCCTCCTTTCCAAATAT
57.145
40.909
0.00
0.00
0.00
1.28
1026
1108
2.580326
TCGCCGCGTAATCCGTTC
60.580
61.111
13.39
0.00
39.32
3.95
1029
1111
3.320078
CTGTCGCCGCGTAATCCG
61.320
66.667
13.39
0.00
40.40
4.18
1113
1195
1.470632
GCCAGATCAGACTGAACCTCG
60.471
57.143
9.70
4.12
39.94
4.63
1192
1274
0.609957
CATGGTGACCTGTGGCATGT
60.610
55.000
2.11
0.00
0.00
3.21
1263
1345
5.759273
CAGGAACTCCAAGATCATCATCTTC
59.241
44.000
0.00
0.00
41.94
2.87
1581
1663
2.126424
GCGCTTCTCTTCGACGGT
60.126
61.111
0.00
0.00
0.00
4.83
1641
1723
2.267006
CTCAGACATGCCGTGCCT
59.733
61.111
0.00
0.00
0.00
4.75
1684
1766
1.213678
AGATGATGATGGTGGTGGGTG
59.786
52.381
0.00
0.00
0.00
4.61
1773
1855
1.436195
CGGTGTACATCGCCATTGGG
61.436
60.000
16.71
0.00
46.24
4.12
1791
1873
3.741476
GGCTTGACAGGGCTTGCG
61.741
66.667
3.66
0.00
0.00
4.85
1975
2060
2.158957
TGACAAACTCAGTCTCCACACC
60.159
50.000
0.00
0.00
36.94
4.16
2211
2296
2.032528
CCTGTCGCCTTTCCAGCA
59.967
61.111
0.00
0.00
0.00
4.41
2438
2523
3.127533
CGCCCTTCTTGGAAGCCG
61.128
66.667
2.11
3.77
38.35
5.52
2586
2674
2.048127
GGTGACAGCTCCACCGAC
60.048
66.667
16.45
0.00
43.80
4.79
2632
2722
1.806542
TGCCGCTTCTTCTGAAACATC
59.193
47.619
0.00
0.00
0.00
3.06
2653
2743
4.201950
GGATGGAAACGGAGATGAACAATG
60.202
45.833
0.00
0.00
0.00
2.82
2672
2763
0.395586
TCGCCCCCTGAAATTGGATG
60.396
55.000
0.00
0.00
0.00
3.51
2676
2767
0.749454
CTCCTCGCCCCCTGAAATTG
60.749
60.000
0.00
0.00
0.00
2.32
2743
2834
1.022735
GGCGTCGAAGTAGAGGATGA
58.977
55.000
0.00
0.00
0.00
2.92
2850
2941
5.588648
CAGTTTCTTCAACCCAACTACAGAA
59.411
40.000
0.00
0.00
35.77
3.02
2915
3006
3.381908
CGAGCTCTAGGACATTTACCTGT
59.618
47.826
12.85
0.00
38.31
4.00
2982
3073
4.434520
GGCTGTGATTCCTACTACAGTTC
58.565
47.826
0.00
0.00
41.84
3.01
3178
3283
8.693542
AATAGCACATGATTTTAGTTTTGAGC
57.306
30.769
0.00
0.00
0.00
4.26
3198
3303
4.151335
CGTATGTTCTGCATCAGGAATAGC
59.849
45.833
0.00
0.00
38.94
2.97
3199
3304
4.687948
CCGTATGTTCTGCATCAGGAATAG
59.312
45.833
0.00
0.00
38.94
1.73
3246
3351
4.379813
GGGTGAAACTGTTGTGCTATGATG
60.380
45.833
0.00
0.00
36.74
3.07
3294
3399
5.591643
TCTTTCTACAGCTAAGTTTTGCG
57.408
39.130
0.00
0.00
34.13
4.85
3340
3445
7.731556
TTTGCAAATTGTTTTTGTTACATGC
57.268
28.000
8.05
0.00
32.45
4.06
3501
3606
2.202824
CGGTCGCATAAGCCGGAA
60.203
61.111
5.05
0.00
41.60
4.30
3569
3674
0.978146
AGACCTGGAGGGGTTCATCG
60.978
60.000
0.00
0.00
40.06
3.84
3642
3753
0.391661
ATGCGCTCACCGAATCAAGT
60.392
50.000
9.73
0.00
40.02
3.16
3660
3771
0.032678
CGAATCTGCTCGGCCTGTAT
59.967
55.000
0.00
0.00
35.14
2.29
3687
3798
1.282248
ACAAGGATGTGTTCGCGTCG
61.282
55.000
5.77
0.00
38.69
5.12
3714
3825
1.735360
CGATTGGATTGGCGGCATT
59.265
52.632
14.32
9.81
0.00
3.56
3750
3861
0.456312
CGTTGACGAGTGGCTACCTC
60.456
60.000
0.00
0.00
43.02
3.85
3819
3930
0.322816
TGGCAACATCAGGGAGAAGC
60.323
55.000
0.00
0.00
46.17
3.86
Based at the University of Bristol with support from BBSRC .
AutoCloner maintained by Alex Coulton.