Multiple sequence alignment - TraesCS4D01G336100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G336100 chr4D 100.000 8903 0 0 1 8903 494049679 494058581 0.000000e+00 16441.0
1 TraesCS4D01G336100 chr4D 88.110 2540 224 47 5480 7987 493976809 493979302 0.000000e+00 2946.0
2 TraesCS4D01G336100 chr4D 89.823 1297 105 16 5805 7095 494072643 494073918 0.000000e+00 1639.0
3 TraesCS4D01G336100 chr4D 89.360 1156 92 17 5960 7095 494100392 494101536 0.000000e+00 1424.0
4 TraesCS4D01G336100 chr4D 88.136 649 57 8 7080 7717 494101685 494102324 0.000000e+00 754.0
5 TraesCS4D01G336100 chr4D 89.138 580 32 14 7214 7785 494073969 494074525 0.000000e+00 693.0
6 TraesCS4D01G336100 chr4D 86.765 544 43 20 951 1487 494065810 494066331 5.990000e-161 579.0
7 TraesCS4D01G336100 chr4D 90.887 417 20 10 7768 8177 494074542 494074947 2.190000e-150 544.0
8 TraesCS4D01G336100 chr4D 88.969 417 41 5 5018 5431 494071776 494072190 2.220000e-140 510.0
9 TraesCS4D01G336100 chr4D 87.879 396 38 9 5039 5431 494099485 494099873 2.930000e-124 457.0
10 TraesCS4D01G336100 chr4D 88.052 385 16 11 1138 1516 494039395 494039755 6.390000e-116 429.0
11 TraesCS4D01G336100 chr4D 84.211 456 53 15 7721 8170 494102460 494102902 8.260000e-115 425.0
12 TraesCS4D01G336100 chr4D 88.754 329 24 8 997 1319 493972065 493972386 3.010000e-104 390.0
13 TraesCS4D01G336100 chr4D 84.254 362 28 8 5477 5832 494072289 494072627 8.620000e-85 326.0
14 TraesCS4D01G336100 chr4D 84.273 337 26 15 5476 5806 494099985 494100300 4.040000e-78 303.0
15 TraesCS4D01G336100 chr4D 83.871 186 21 5 142 322 494038469 494038650 1.540000e-37 169.0
16 TraesCS4D01G336100 chr4D 97.849 93 2 0 3136 3228 494052723 494052815 2.570000e-35 161.0
17 TraesCS4D01G336100 chr4D 97.849 93 2 0 3045 3137 494052814 494052906 2.570000e-35 161.0
18 TraesCS4D01G336100 chr4D 87.778 90 7 4 2726 2813 165260873 165260786 1.580000e-17 102.0
19 TraesCS4D01G336100 chr4D 88.043 92 3 3 858 943 494065740 494065829 1.580000e-17 102.0
20 TraesCS4D01G336100 chr4D 90.000 70 7 0 4811 4880 494099274 494099343 3.420000e-14 91.6
21 TraesCS4D01G336100 chr4D 95.556 45 2 0 5433 5477 494072217 494072261 1.240000e-08 73.1
22 TraesCS4D01G336100 chr5A 93.353 2723 144 19 5476 8177 673557198 673559904 0.000000e+00 3991.0
23 TraesCS4D01G336100 chr5A 88.206 1221 88 23 5898 7095 673691251 673692438 0.000000e+00 1406.0
24 TraesCS4D01G336100 chr5A 89.124 1039 89 16 7122 8155 673692602 673693621 0.000000e+00 1271.0
25 TraesCS4D01G336100 chr5A 87.678 982 74 22 4467 5431 673556154 673557105 0.000000e+00 1099.0
26 TraesCS4D01G336100 chr5A 85.028 895 55 35 657 1515 673552954 673553805 0.000000e+00 837.0
27 TraesCS4D01G336100 chr5A 92.086 417 24 6 3129 3542 673555446 673555856 5.990000e-161 579.0
28 TraesCS4D01G336100 chr5A 88.017 484 37 10 2246 2717 673554721 673555195 3.630000e-153 553.0
29 TraesCS4D01G336100 chr5A 86.937 444 41 11 1582 2016 673554003 673554438 4.830000e-132 483.0
30 TraesCS4D01G336100 chr5A 88.071 394 43 4 5039 5431 673690405 673690795 1.750000e-126 464.0
31 TraesCS4D01G336100 chr5A 88.251 383 27 11 1139 1520 673541529 673541894 8.200000e-120 442.0
32 TraesCS4D01G336100 chr5A 89.227 362 19 12 1138 1486 673511611 673511965 1.370000e-117 435.0
33 TraesCS4D01G336100 chr5A 88.267 375 24 12 1142 1506 673678820 673679184 1.780000e-116 431.0
34 TraesCS4D01G336100 chr5A 89.846 325 29 1 2813 3137 673555219 673555539 1.790000e-111 414.0
35 TraesCS4D01G336100 chr5A 83.383 337 28 16 5476 5806 673690905 673691219 4.070000e-73 287.0
36 TraesCS4D01G336100 chr5A 89.815 108 11 0 3531 3638 673555888 673555995 1.210000e-28 139.0
37 TraesCS4D01G336100 chr5A 85.135 148 7 10 953 1091 673541379 673541520 4.340000e-28 137.0
38 TraesCS4D01G336100 chr5A 78.261 184 30 6 1817 1992 673549797 673549978 9.450000e-20 110.0
39 TraesCS4D01G336100 chr5A 91.429 70 6 0 4811 4880 673690208 673690277 7.360000e-16 97.1
40 TraesCS4D01G336100 chr5A 96.226 53 2 0 8305 8357 118664117 118664065 4.430000e-13 87.9
41 TraesCS4D01G336100 chr5A 83.505 97 12 4 997 1091 673511509 673511603 4.430000e-13 87.9
42 TraesCS4D01G336100 chr5A 97.561 41 1 0 510 550 469231651 469231691 4.460000e-08 71.3
43 TraesCS4D01G336100 chr5A 96.970 33 1 0 8176 8208 673540722 673540754 1.000000e-03 56.5
44 TraesCS4D01G336100 chr4B 93.199 2382 104 15 4628 6980 633146314 633148666 0.000000e+00 3448.0
45 TraesCS4D01G336100 chr4B 88.420 2703 217 44 5477 8161 633287172 633289796 0.000000e+00 3169.0
46 TraesCS4D01G336100 chr4B 87.949 1892 163 42 5480 7333 632871189 632873053 0.000000e+00 2170.0
47 TraesCS4D01G336100 chr4B 94.071 1248 59 8 6979 8220 633148790 633150028 0.000000e+00 1881.0
48 TraesCS4D01G336100 chr4B 88.370 1307 114 20 5814 7095 633327467 633328760 0.000000e+00 1537.0
49 TraesCS4D01G336100 chr4B 86.915 1047 103 23 7129 8166 633328923 633329944 0.000000e+00 1144.0
50 TraesCS4D01G336100 chr4B 85.055 1084 103 28 3394 4464 633145201 633146238 0.000000e+00 1050.0
51 TraesCS4D01G336100 chr4B 83.092 899 53 46 661 1527 633142232 633143063 0.000000e+00 726.0
52 TraesCS4D01G336100 chr4B 87.755 588 52 7 7328 7910 632874985 632875557 0.000000e+00 669.0
53 TraesCS4D01G336100 chr4B 91.355 428 19 9 1 427 633141714 633142124 3.610000e-158 569.0
54 TraesCS4D01G336100 chr4B 82.380 647 45 38 848 1485 633282501 633283087 4.800000e-137 499.0
55 TraesCS4D01G336100 chr4B 87.321 418 47 5 5018 5431 633286660 633287075 2.910000e-129 473.0
56 TraesCS4D01G336100 chr4B 84.211 532 34 27 997 1494 632863945 632864460 1.050000e-128 472.0
57 TraesCS4D01G336100 chr4B 86.936 421 48 7 5012 5431 632870678 632871092 4.870000e-127 466.0
58 TraesCS4D01G336100 chr4B 89.859 355 19 9 1138 1490 633136393 633136732 2.950000e-119 440.0
59 TraesCS4D01G336100 chr4B 88.319 351 35 5 5084 5431 633326667 633327014 4.970000e-112 416.0
60 TraesCS4D01G336100 chr4B 86.769 325 39 2 2813 3137 633144624 633144944 8.500000e-95 359.0
61 TraesCS4D01G336100 chr4B 91.603 262 13 4 3136 3394 633144856 633145111 3.950000e-93 353.0
62 TraesCS4D01G336100 chr4B 83.240 358 33 15 5476 5827 633327113 633327449 4.040000e-78 303.0
63 TraesCS4D01G336100 chr4B 91.729 133 7 3 1801 1930 633143502 633143633 1.970000e-41 182.0
64 TraesCS4D01G336100 chr4B 98.000 100 2 0 8217 8316 633150443 633150542 3.300000e-39 174.0
65 TraesCS4D01G336100 chr4B 78.616 318 27 25 2242 2525 633144190 633144500 1.190000e-38 172.0
66 TraesCS4D01G336100 chr4B 82.632 190 21 7 143 324 633135628 633135813 3.330000e-34 158.0
67 TraesCS4D01G336100 chr4B 95.402 87 4 0 2728 2814 654443093 654443179 1.210000e-28 139.0
68 TraesCS4D01G336100 chr4B 86.111 108 15 0 2619 2726 633144503 633144610 5.650000e-22 117.0
69 TraesCS4D01G336100 chr4B 82.313 147 12 9 424 556 183522898 183522752 2.030000e-21 115.0
70 TraesCS4D01G336100 chr4B 82.143 140 12 7 424 550 444347712 444347851 3.400000e-19 108.0
71 TraesCS4D01G336100 chr4B 95.312 64 3 0 4522 4585 633146257 633146320 1.580000e-17 102.0
72 TraesCS4D01G336100 chr4B 76.585 205 33 10 1796 1991 633136900 633137098 2.050000e-16 99.0
73 TraesCS4D01G336100 chr4B 77.419 155 15 7 2044 2191 633143759 633143900 3.450000e-09 75.0
74 TraesCS4D01G336100 chr4B 100.000 36 0 0 4812 4847 633286526 633286561 5.770000e-07 67.6
75 TraesCS4D01G336100 chr1B 82.816 1612 205 46 5515 7096 659556185 659557754 0.000000e+00 1376.0
76 TraesCS4D01G336100 chr1B 81.667 720 92 27 7211 7907 659557793 659558495 6.040000e-156 562.0
77 TraesCS4D01G336100 chr1B 79.798 495 67 19 1006 1486 659554957 659555432 6.660000e-86 329.0
78 TraesCS4D01G336100 chr1B 86.784 227 21 1 1062 1279 79978159 79978385 2.480000e-60 244.0
79 TraesCS4D01G336100 chr6B 96.032 504 19 1 8400 8903 702286432 702285930 0.000000e+00 819.0
80 TraesCS4D01G336100 chr6B 82.090 134 19 5 421 551 43320005 43320136 9.450000e-20 110.0
81 TraesCS4D01G336100 chr6B 84.071 113 16 2 436 547 693128667 693128778 3.400000e-19 108.0
82 TraesCS4D01G336100 chr2B 94.922 512 26 0 8392 8903 82079558 82079047 0.000000e+00 802.0
83 TraesCS4D01G336100 chr2B 91.525 59 5 0 8299 8357 210261410 210261468 2.060000e-11 82.4
84 TraesCS4D01G336100 chr2B 91.525 59 3 2 8300 8357 47546200 47546143 7.410000e-11 80.5
85 TraesCS4D01G336100 chr2B 100.000 29 0 0 8364 8392 82079786 82079758 4.000000e-03 54.7
86 TraesCS4D01G336100 chrUn 97.234 470 11 1 8392 8861 297719892 297720359 0.000000e+00 795.0
87 TraesCS4D01G336100 chrUn 94.118 34 2 0 8359 8392 297719659 297719692 1.600000e-02 52.8
88 TraesCS4D01G336100 chrUn 100.000 28 0 0 8365 8392 397425185 397425158 1.600000e-02 52.8
89 TraesCS4D01G336100 chrUn 94.118 34 2 0 8359 8392 428410773 428410806 1.600000e-02 52.8
90 TraesCS4D01G336100 chr1D 82.681 843 101 26 6002 6825 474054776 474055592 0.000000e+00 706.0
91 TraesCS4D01G336100 chr1D 82.394 710 91 23 7216 7905 474055994 474056689 9.960000e-164 588.0
92 TraesCS4D01G336100 chr1D 79.283 502 61 26 1013 1492 474052890 474053370 2.410000e-80 311.0
93 TraesCS4D01G336100 chr1D 82.014 139 13 7 430 556 431763700 431763562 3.400000e-19 108.0
94 TraesCS4D01G336100 chr2A 92.944 411 13 2 8493 8903 163468507 163468901 1.290000e-162 584.0
95 TraesCS4D01G336100 chr2A 87.973 291 27 4 8615 8901 455450932 455450646 3.980000e-88 337.0
96 TraesCS4D01G336100 chr2A 95.455 88 4 0 2728 2815 30154303 30154390 3.350000e-29 141.0
97 TraesCS4D01G336100 chr2A 89.062 64 4 3 8293 8354 124247345 124247407 9.580000e-10 76.8
98 TraesCS4D01G336100 chr7B 86.417 508 61 7 8397 8901 364215357 364214855 4.700000e-152 549.0
99 TraesCS4D01G336100 chr7B 83.850 452 66 4 8398 8845 562382904 562382456 2.970000e-114 424.0
100 TraesCS4D01G336100 chr7B 81.818 154 14 11 420 560 339619075 339618923 5.650000e-22 117.0
101 TraesCS4D01G336100 chr7B 82.000 150 13 11 420 556 641259912 641259764 2.030000e-21 115.0
102 TraesCS4D01G336100 chr6A 85.573 506 69 3 8398 8903 602665186 602665687 2.200000e-145 527.0
103 TraesCS4D01G336100 chr6A 95.652 69 3 0 2742 2810 594483216 594483148 2.630000e-20 111.0
104 TraesCS4D01G336100 chr6A 88.298 94 8 3 420 511 573641774 573641866 9.450000e-20 110.0
105 TraesCS4D01G336100 chr6A 90.000 60 6 0 8299 8358 288406484 288406543 2.660000e-10 78.7
106 TraesCS4D01G336100 chr3D 91.579 285 22 2 8620 8903 584634356 584634073 8.380000e-105 392.0
107 TraesCS4D01G336100 chr3D 87.356 87 9 2 2729 2814 238498758 238498673 2.050000e-16 99.0
108 TraesCS4D01G336100 chr1A 79.513 493 66 23 1013 1486 568543722 568544198 1.440000e-82 318.0
109 TraesCS4D01G336100 chr2D 95.294 85 4 0 2729 2813 413783691 413783607 1.560000e-27 135.0
110 TraesCS4D01G336100 chr2D 94.186 86 5 0 2728 2813 414630980 414630895 2.020000e-26 132.0
111 TraesCS4D01G336100 chr2D 86.325 117 12 4 430 544 478834340 478834226 3.370000e-24 124.0
112 TraesCS4D01G336100 chr2D 82.787 122 18 3 430 550 640021715 640021834 1.220000e-18 106.0
113 TraesCS4D01G336100 chr6D 84.722 144 8 11 420 550 80150695 80150837 2.020000e-26 132.0
114 TraesCS4D01G336100 chr6D 83.916 143 10 7 421 550 428261283 428261425 3.370000e-24 124.0
115 TraesCS4D01G336100 chr6D 83.217 143 11 9 421 550 381007909 381008051 1.570000e-22 119.0
116 TraesCS4D01G336100 chr6D 80.952 126 20 4 424 547 85555844 85555721 7.360000e-16 97.1
117 TraesCS4D01G336100 chr4A 92.941 85 6 0 2729 2813 309080902 309080986 3.370000e-24 124.0
118 TraesCS4D01G336100 chr4A 92.941 85 6 0 2729 2813 309081994 309082078 3.370000e-24 124.0
119 TraesCS4D01G336100 chr4A 89.362 94 9 1 2720 2813 309080994 309080902 5.650000e-22 117.0
120 TraesCS4D01G336100 chr4A 89.362 94 9 1 2720 2813 309082086 309081994 5.650000e-22 117.0
121 TraesCS4D01G336100 chr4A 85.057 87 9 4 2729 2813 719098208 719098292 1.590000e-12 86.1
122 TraesCS4D01G336100 chr4A 91.525 59 5 0 8299 8357 60654293 60654235 2.060000e-11 82.4
123 TraesCS4D01G336100 chr3B 83.562 146 10 8 424 556 488134386 488134242 3.370000e-24 124.0
124 TraesCS4D01G336100 chr3B 82.203 118 18 3 435 550 657641806 657641922 2.050000e-16 99.0
125 TraesCS4D01G336100 chr7A 79.167 144 16 9 420 550 102329981 102330123 4.430000e-13 87.9
126 TraesCS4D01G336100 chr7A 87.879 66 7 1 8293 8357 481084228 481084163 9.580000e-10 76.8
127 TraesCS4D01G336100 chr5B 96.154 52 2 0 8306 8357 123753555 123753504 1.590000e-12 86.1
128 TraesCS4D01G336100 chr5B 84.270 89 9 3 2729 2814 712959900 712959986 2.060000e-11 82.4
129 TraesCS4D01G336100 chr5B 94.872 39 1 1 2779 2816 564197150 564197112 9.650000e-05 60.2
130 TraesCS4D01G336100 chr5B 94.872 39 1 1 2779 2816 564237183 564237145 9.650000e-05 60.2
131 TraesCS4D01G336100 chr3A 90.164 61 6 0 8297 8357 659015371 659015431 7.410000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G336100 chr4D 494049679 494058581 8902 False 16441.000000 16441 100.000000 1 8903 1 chr4D.!!$F3 8902
1 TraesCS4D01G336100 chr4D 493976809 493979302 2493 False 2946.000000 2946 88.110000 5480 7987 1 chr4D.!!$F2 2507
2 TraesCS4D01G336100 chr4D 494071776 494074947 3171 False 630.850000 1639 89.771167 5018 8177 6 chr4D.!!$F7 3159
3 TraesCS4D01G336100 chr4D 494099274 494102902 3628 False 575.766667 1424 87.309833 4811 8170 6 chr4D.!!$F8 3359
4 TraesCS4D01G336100 chr4D 494065740 494066331 591 False 340.500000 579 87.404000 858 1487 2 chr4D.!!$F6 629
5 TraesCS4D01G336100 chr4D 494038469 494039755 1286 False 299.000000 429 85.961500 142 1516 2 chr4D.!!$F4 1374
6 TraesCS4D01G336100 chr5A 673549797 673559904 10107 False 911.666667 3991 87.891222 657 8177 9 chr5A.!!$F5 7520
7 TraesCS4D01G336100 chr5A 673690208 673693621 3413 False 705.020000 1406 88.042600 4811 8155 5 chr5A.!!$F6 3344
8 TraesCS4D01G336100 chr5A 673540722 673541894 1172 False 211.833333 442 90.118667 953 8208 3 chr5A.!!$F4 7255
9 TraesCS4D01G336100 chr4B 632870678 632875557 4879 False 1101.666667 2170 87.546667 5012 7910 3 chr4B.!!$F4 2898
10 TraesCS4D01G336100 chr4B 633282501 633289796 7295 False 1052.150000 3169 89.530250 848 8161 4 chr4B.!!$F7 7313
11 TraesCS4D01G336100 chr4B 633326667 633329944 3277 False 850.000000 1537 86.711000 5084 8166 4 chr4B.!!$F8 3082
12 TraesCS4D01G336100 chr4B 633141714 633150542 8828 False 708.307692 3448 88.640846 1 8316 13 chr4B.!!$F6 8315
13 TraesCS4D01G336100 chr4B 632863945 632864460 515 False 472.000000 472 84.211000 997 1494 1 chr4B.!!$F2 497
14 TraesCS4D01G336100 chr4B 633135628 633137098 1470 False 232.333333 440 83.025333 143 1991 3 chr4B.!!$F5 1848
15 TraesCS4D01G336100 chr1B 659554957 659558495 3538 False 755.666667 1376 81.427000 1006 7907 3 chr1B.!!$F2 6901
16 TraesCS4D01G336100 chr6B 702285930 702286432 502 True 819.000000 819 96.032000 8400 8903 1 chr6B.!!$R1 503
17 TraesCS4D01G336100 chr2B 82079047 82079786 739 True 428.350000 802 97.461000 8364 8903 2 chr2B.!!$R2 539
18 TraesCS4D01G336100 chrUn 297719659 297720359 700 False 423.900000 795 95.676000 8359 8861 2 chrUn.!!$F2 502
19 TraesCS4D01G336100 chr1D 474052890 474056689 3799 False 535.000000 706 81.452667 1013 7905 3 chr1D.!!$F1 6892
20 TraesCS4D01G336100 chr7B 364214855 364215357 502 True 549.000000 549 86.417000 8397 8901 1 chr7B.!!$R2 504
21 TraesCS4D01G336100 chr6A 602665186 602665687 501 False 527.000000 527 85.573000 8398 8903 1 chr6A.!!$F3 505

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
825 3333 0.185901 TGGAAGGAAGCCAAGCAACT 59.814 50.0 0.00 0.00 31.13 3.16 F
1579 4422 0.109226 GTCTCCGTATATGCCTCGGC 60.109 60.0 0.00 0.00 43.35 5.54 F
2546 8278 0.104855 TGATGAGCATGTACGGAGCC 59.895 55.0 0.00 0.00 0.00 4.70 F
3641 9519 0.173481 TGGATGAAGACGAAGCCGAG 59.827 55.0 0.00 0.00 39.50 4.63 F
4597 10549 0.116940 ACAATCCTGGGCCAAACCAT 59.883 50.0 8.04 0.00 40.36 3.55 F
4601 10553 0.189574 TCCTGGGCCAAACCATCAAA 59.810 50.0 8.04 0.00 40.36 2.69 F
5265 11278 0.384725 CCGTTTGCTGCTTCTGAACG 60.385 55.0 0.00 9.43 41.77 3.95 F
6118 12323 0.842635 ATCTCCAAGATGGCTGGTCC 59.157 55.0 0.00 0.00 37.47 4.46 F
6650 12884 0.959372 AAGCTGCAGGCAAGCTGTAG 60.959 55.0 17.12 4.84 44.79 2.74 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1713 4743 0.178990 ACGCCTCTTTTTGGAGCCTT 60.179 50.000 0.00 0.00 32.43 4.35 R
3179 8918 0.178941 GGCGGGTAGGATCTTAGGGA 60.179 60.000 0.00 0.00 0.00 4.20 R
4288 10238 0.039437 TCTGAAGTGCGAAGTCCGTC 60.039 55.000 0.00 0.00 41.15 4.79 R
4614 10566 0.032267 GGATACTTCGGAGCCTTCGG 59.968 60.000 0.00 0.00 0.00 4.30 R
6534 12768 0.829333 TGCCAAGTTGCACCACAATT 59.171 45.000 0.00 0.00 41.27 2.32 R
6733 12995 4.127171 GCTGTTTGTAACACCTGAAGAGA 58.873 43.478 0.00 0.00 36.25 3.10 R
7191 13857 2.270527 GGCAGAAGAGGCCCTGTC 59.729 66.667 0.00 0.00 45.87 3.51 R
7522 16130 1.065926 TGCTCCAGTGACATGCCTAAG 60.066 52.381 0.00 0.00 0.00 2.18 R
8356 17590 0.171679 CATGAAGCTCCGCAATTGCA 59.828 50.000 28.77 10.64 42.21 4.08 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 3.295093 TGTGATTGCTTTTCCAGTTGGA 58.705 40.909 0.00 0.00 43.73 3.53
49 50 5.897377 ATCGAAACCTGAAAACAATAGGG 57.103 39.130 0.00 0.00 35.89 3.53
95 96 2.106338 TGCATGTGGGTTCTCTCAAGAA 59.894 45.455 0.00 0.00 39.22 2.52
97 98 3.057946 GCATGTGGGTTCTCTCAAGAAAC 60.058 47.826 0.00 0.00 46.68 2.78
107 108 7.607250 GGTTCTCTCAAGAAACAAGATAGAGA 58.393 38.462 0.00 0.00 46.64 3.10
108 109 7.759433 GGTTCTCTCAAGAAACAAGATAGAGAG 59.241 40.741 9.60 9.60 46.64 3.20
110 111 8.279970 TCTCTCAAGAAACAAGATAGAGAGAG 57.720 38.462 13.45 0.00 46.75 3.20
111 112 8.106462 TCTCTCAAGAAACAAGATAGAGAGAGA 58.894 37.037 13.45 12.70 46.75 3.10
112 113 8.821686 TCTCAAGAAACAAGATAGAGAGAGAT 57.178 34.615 0.00 0.00 0.00 2.75
183 184 5.466058 TCGCACCGACTAACAAGAAAAATAA 59.534 36.000 0.00 0.00 0.00 1.40
264 271 5.011090 AGCAAGTAAGATCATCGCTTACA 57.989 39.130 13.87 0.00 46.30 2.41
363 370 1.001633 ACCAAGTGCACCCTAACTACG 59.998 52.381 14.63 0.00 0.00 3.51
364 371 1.001633 CCAAGTGCACCCTAACTACGT 59.998 52.381 14.63 0.00 0.00 3.57
365 372 2.231964 CCAAGTGCACCCTAACTACGTA 59.768 50.000 14.63 0.00 0.00 3.57
366 373 3.508762 CAAGTGCACCCTAACTACGTAG 58.491 50.000 20.97 20.97 0.00 3.51
398 405 4.978099 AGCATTGGGTATGAGATTGTAGG 58.022 43.478 0.00 0.00 36.26 3.18
399 406 4.660303 AGCATTGGGTATGAGATTGTAGGA 59.340 41.667 0.00 0.00 36.26 2.94
400 407 5.132648 AGCATTGGGTATGAGATTGTAGGAA 59.867 40.000 0.00 0.00 36.26 3.36
402 409 6.016777 GCATTGGGTATGAGATTGTAGGAAAG 60.017 42.308 0.00 0.00 36.26 2.62
427 434 1.533625 CAAATCCGGTGCTTGGAAGA 58.466 50.000 0.00 0.00 39.39 2.87
428 435 2.094675 CAAATCCGGTGCTTGGAAGAT 58.905 47.619 0.00 0.00 39.39 2.40
430 437 0.911769 ATCCGGTGCTTGGAAGATCA 59.088 50.000 0.00 0.00 39.39 2.92
439 446 6.325596 GGTGCTTGGAAGATCATCTAAAAAC 58.674 40.000 0.00 0.00 0.00 2.43
440 447 6.024049 GTGCTTGGAAGATCATCTAAAAACG 58.976 40.000 0.00 0.00 0.00 3.60
442 449 5.354234 GCTTGGAAGATCATCTAAAAACGGA 59.646 40.000 0.00 0.00 0.00 4.69
444 451 4.876107 TGGAAGATCATCTAAAAACGGAGC 59.124 41.667 0.00 0.00 0.00 4.70
445 452 4.273724 GGAAGATCATCTAAAAACGGAGCC 59.726 45.833 0.00 0.00 0.00 4.70
446 453 3.809905 AGATCATCTAAAAACGGAGCCC 58.190 45.455 0.00 0.00 0.00 5.19
447 454 2.413310 TCATCTAAAAACGGAGCCCC 57.587 50.000 0.00 0.00 0.00 5.80
462 469 3.793888 CCCCCGTCAGTAAGGGCC 61.794 72.222 0.00 0.00 46.24 5.80
463 470 4.157120 CCCCGTCAGTAAGGGCCG 62.157 72.222 0.00 0.00 46.24 6.13
466 473 3.072468 CGTCAGTAAGGGCCGGGA 61.072 66.667 2.18 0.00 0.00 5.14
467 474 2.432300 CGTCAGTAAGGGCCGGGAT 61.432 63.158 2.18 0.00 0.00 3.85
468 475 1.446366 GTCAGTAAGGGCCGGGATC 59.554 63.158 2.18 0.00 0.00 3.36
469 476 1.764854 TCAGTAAGGGCCGGGATCC 60.765 63.158 1.92 1.92 0.00 3.36
470 477 2.070039 CAGTAAGGGCCGGGATCCA 61.070 63.158 15.23 0.00 0.00 3.41
471 478 2.070650 AGTAAGGGCCGGGATCCAC 61.071 63.158 15.23 1.75 0.00 4.02
472 479 2.770904 TAAGGGCCGGGATCCACC 60.771 66.667 15.23 11.54 38.08 4.61
502 509 4.295407 CCCTAAGGCCATCGAGGA 57.705 61.111 5.01 0.00 41.22 3.71
531 538 1.302192 CCGACGGAAGGCAAAGGAA 60.302 57.895 8.64 0.00 41.50 3.36
534 541 1.228459 ACGGAAGGCAAAGGAACCC 60.228 57.895 0.00 0.00 0.00 4.11
535 542 1.074951 CGGAAGGCAAAGGAACCCT 59.925 57.895 0.00 0.00 33.87 4.34
538 545 2.447443 GGAAGGCAAAGGAACCCTAAG 58.553 52.381 0.00 0.00 31.13 2.18
539 546 1.819288 GAAGGCAAAGGAACCCTAAGC 59.181 52.381 0.00 0.00 34.28 3.09
540 547 1.076438 AGGCAAAGGAACCCTAAGCT 58.924 50.000 8.72 0.00 35.05 3.74
543 550 2.632996 GGCAAAGGAACCCTAAGCTTTT 59.367 45.455 3.20 0.00 35.05 2.27
545 552 3.574396 GCAAAGGAACCCTAAGCTTTTCT 59.426 43.478 3.20 0.00 32.93 2.52
547 554 5.532557 CAAAGGAACCCTAAGCTTTTCTTG 58.467 41.667 3.20 0.62 36.25 3.02
557 564 6.360618 CCTAAGCTTTTCTTGGGTATGAGAT 58.639 40.000 3.20 0.00 45.39 2.75
560 567 5.574188 AGCTTTTCTTGGGTATGAGATTGT 58.426 37.500 0.00 0.00 0.00 2.71
561 568 6.721318 AGCTTTTCTTGGGTATGAGATTGTA 58.279 36.000 0.00 0.00 0.00 2.41
562 569 6.825721 AGCTTTTCTTGGGTATGAGATTGTAG 59.174 38.462 0.00 0.00 0.00 2.74
564 571 7.121315 GCTTTTCTTGGGTATGAGATTGTAGTT 59.879 37.037 0.00 0.00 0.00 2.24
571 578 6.670464 TGGGTATGAGATTGTAGTTGTAGGAA 59.330 38.462 0.00 0.00 0.00 3.36
573 580 7.711339 GGGTATGAGATTGTAGTTGTAGGAAAG 59.289 40.741 0.00 0.00 0.00 2.62
576 583 6.530120 TGAGATTGTAGTTGTAGGAAAGCAA 58.470 36.000 0.00 0.00 0.00 3.91
577 584 6.995686 TGAGATTGTAGTTGTAGGAAAGCAAA 59.004 34.615 0.00 0.00 0.00 3.68
578 585 7.665559 TGAGATTGTAGTTGTAGGAAAGCAAAT 59.334 33.333 0.00 0.00 0.00 2.32
580 587 7.665559 AGATTGTAGTTGTAGGAAAGCAAATCA 59.334 33.333 0.00 0.00 0.00 2.57
583 590 8.177119 TGTAGTTGTAGGAAAGCAAATCAAAT 57.823 30.769 0.00 0.00 0.00 2.32
584 591 8.296713 TGTAGTTGTAGGAAAGCAAATCAAATC 58.703 33.333 0.00 0.00 0.00 2.17
585 592 6.691508 AGTTGTAGGAAAGCAAATCAAATCC 58.308 36.000 0.00 0.00 0.00 3.01
588 595 3.165071 AGGAAAGCAAATCAAATCCGGT 58.835 40.909 0.00 0.00 32.22 5.28
589 596 3.056607 AGGAAAGCAAATCAAATCCGGTG 60.057 43.478 0.00 0.00 32.22 4.94
590 597 2.368655 AAGCAAATCAAATCCGGTGC 57.631 45.000 0.00 0.36 0.00 5.01
591 598 1.549203 AGCAAATCAAATCCGGTGCT 58.451 45.000 6.13 6.13 37.50 4.40
592 599 1.895131 AGCAAATCAAATCCGGTGCTT 59.105 42.857 6.13 0.00 39.19 3.91
595 602 2.214376 AATCAAATCCGGTGCTTGGA 57.786 45.000 0.00 0.00 40.46 3.53
623 630 2.877168 GGATGATGTGATCAGAACAGGC 59.123 50.000 8.74 3.71 43.53 4.85
635 642 1.625818 AGAACAGGCTCTTGTACCCAG 59.374 52.381 0.00 0.00 0.00 4.45
678 3180 6.194235 TGGAAATGGTTAGTGGAATAATGCT 58.806 36.000 0.00 0.00 0.00 3.79
711 3213 2.398036 CACGTGCGCGGGAATAAC 59.602 61.111 25.20 0.00 45.97 1.89
712 3214 2.048033 ACGTGCGCGGGAATAACA 60.048 55.556 25.20 0.00 43.45 2.41
764 3272 3.683340 CGTAGGTAGGCCTTTGACTTTTC 59.317 47.826 12.58 0.00 44.18 2.29
768 3276 2.371658 AGGCCTTTGACTTTTCAGCT 57.628 45.000 0.00 0.00 31.71 4.24
769 3277 1.959282 AGGCCTTTGACTTTTCAGCTG 59.041 47.619 7.63 7.63 31.71 4.24
792 3300 2.393768 GCTGCTGCGCACATGTACT 61.394 57.895 5.66 0.00 33.79 2.73
794 3302 2.017458 CTGCTGCGCACATGTACTCG 62.017 60.000 5.66 3.93 33.79 4.18
825 3333 0.185901 TGGAAGGAAGCCAAGCAACT 59.814 50.000 0.00 0.00 31.13 3.16
826 3334 0.884514 GGAAGGAAGCCAAGCAACTC 59.115 55.000 0.00 0.00 0.00 3.01
852 3363 1.838345 CGTTGTAGATGTACGTCTGCG 59.162 52.381 24.93 18.64 44.93 5.18
865 3376 1.797025 GTCTGCGAACAAGCTACCTT 58.203 50.000 0.00 0.00 38.13 3.50
889 3408 2.532532 CGAGCCCATCCCATCCCAT 61.533 63.158 0.00 0.00 0.00 4.00
930 3455 4.082845 AGTCGACATCCTCTTCTTCTTCA 58.917 43.478 19.50 0.00 0.00 3.02
931 3456 4.709397 AGTCGACATCCTCTTCTTCTTCAT 59.291 41.667 19.50 0.00 0.00 2.57
932 3457 5.040635 GTCGACATCCTCTTCTTCTTCATC 58.959 45.833 11.55 0.00 0.00 2.92
933 3458 4.098654 TCGACATCCTCTTCTTCTTCATCC 59.901 45.833 0.00 0.00 0.00 3.51
934 3459 4.702831 GACATCCTCTTCTTCTTCATCCC 58.297 47.826 0.00 0.00 0.00 3.85
935 3460 4.369872 ACATCCTCTTCTTCTTCATCCCT 58.630 43.478 0.00 0.00 0.00 4.20
936 3461 4.408596 ACATCCTCTTCTTCTTCATCCCTC 59.591 45.833 0.00 0.00 0.00 4.30
937 3462 3.379452 TCCTCTTCTTCTTCATCCCTCC 58.621 50.000 0.00 0.00 0.00 4.30
938 3463 2.437651 CCTCTTCTTCTTCATCCCTCCC 59.562 54.545 0.00 0.00 0.00 4.30
939 3464 3.383223 CTCTTCTTCTTCATCCCTCCCT 58.617 50.000 0.00 0.00 0.00 4.20
940 3465 3.379452 TCTTCTTCTTCATCCCTCCCTC 58.621 50.000 0.00 0.00 0.00 4.30
941 3466 2.182516 TCTTCTTCATCCCTCCCTCC 57.817 55.000 0.00 0.00 0.00 4.30
942 3467 1.135960 CTTCTTCATCCCTCCCTCCC 58.864 60.000 0.00 0.00 0.00 4.30
943 3468 0.327576 TTCTTCATCCCTCCCTCCCC 60.328 60.000 0.00 0.00 0.00 4.81
944 3469 1.772156 CTTCATCCCTCCCTCCCCC 60.772 68.421 0.00 0.00 0.00 5.40
959 3484 3.591835 CCCCGCGCTCTCTCTCTC 61.592 72.222 5.56 0.00 0.00 3.20
1147 3756 2.510551 ATGGCCATCATCCGCGAGA 61.511 57.895 14.09 3.13 0.00 4.04
1155 3764 4.129737 ATCCGCGAGACCCACGTG 62.130 66.667 8.23 9.08 40.27 4.49
1304 3913 0.846015 ATCCTTGATTCCATCGCCCA 59.154 50.000 0.00 0.00 0.00 5.36
1323 3946 3.320541 CCCATCTTTGTTTACTGTTGCCA 59.679 43.478 0.00 0.00 0.00 4.92
1351 3991 1.766461 CCTGGCCCGGAATCCTACT 60.766 63.158 7.60 0.00 0.00 2.57
1352 3992 0.471211 CCTGGCCCGGAATCCTACTA 60.471 60.000 7.60 0.00 0.00 1.82
1480 4145 1.603739 GGCCACAAAGGGGTGAGAC 60.604 63.158 0.00 0.00 41.32 3.36
1507 4207 7.838771 TTTTTACTTAGGCTATCCGTCTTTC 57.161 36.000 0.00 0.00 37.47 2.62
1527 4340 4.542662 TCTCTACGCACGTAGTATTTCC 57.457 45.455 24.77 0.00 45.90 3.13
1563 4406 2.546795 CGTCTGCCTCAAAGTCAAGTCT 60.547 50.000 0.00 0.00 0.00 3.24
1579 4422 0.109226 GTCTCCGTATATGCCTCGGC 60.109 60.000 0.00 0.00 43.35 5.54
1605 4629 5.441718 ACTCCCAATATGAAGCTTTGAGA 57.558 39.130 0.00 0.00 0.00 3.27
1608 4632 3.887716 CCCAATATGAAGCTTTGAGAGGG 59.112 47.826 0.00 4.94 0.00 4.30
1609 4633 3.317430 CCAATATGAAGCTTTGAGAGGGC 59.683 47.826 0.00 0.00 0.00 5.19
1616 4642 2.670939 AGCTTTGAGAGGGCAAAAACT 58.329 42.857 0.00 0.00 37.32 2.66
1619 4645 3.796844 GCTTTGAGAGGGCAAAAACTCAC 60.797 47.826 0.00 0.00 38.77 3.51
1620 4646 3.297134 TTGAGAGGGCAAAAACTCACT 57.703 42.857 0.00 0.00 38.77 3.41
1621 4647 3.297134 TGAGAGGGCAAAAACTCACTT 57.703 42.857 0.00 0.00 36.20 3.16
1626 4652 7.001674 TGAGAGGGCAAAAACTCACTTAATAA 58.998 34.615 0.00 0.00 36.20 1.40
1631 4657 6.581166 GGGCAAAAACTCACTTAATAAAGTCG 59.419 38.462 0.00 0.00 44.28 4.18
1639 4665 7.481642 ACTCACTTAATAAAGTCGTCATCGAT 58.518 34.615 0.00 0.00 44.28 3.59
1646 4676 2.831284 TCGTCATCGATCGCCCCA 60.831 61.111 11.09 0.00 41.35 4.96
1656 4686 0.664761 GATCGCCCCATCAACATGTG 59.335 55.000 0.00 0.00 0.00 3.21
1692 4722 0.905357 ACAGCCGTCATAGCCTTCTT 59.095 50.000 0.00 0.00 0.00 2.52
1694 4724 0.462759 AGCCGTCATAGCCTTCTTGC 60.463 55.000 0.00 0.00 0.00 4.01
1695 4725 0.744414 GCCGTCATAGCCTTCTTGCA 60.744 55.000 0.00 0.00 0.00 4.08
1696 4726 1.009829 CCGTCATAGCCTTCTTGCAC 58.990 55.000 0.00 0.00 0.00 4.57
1700 4730 1.097547 CATAGCCTTCTTGCACCCCG 61.098 60.000 0.00 0.00 0.00 5.73
1707 4737 0.687920 TTCTTGCACCCCGTATGTCA 59.312 50.000 0.00 0.00 0.00 3.58
1713 4743 1.134521 GCACCCCGTATGTCATGAAGA 60.135 52.381 0.00 0.00 0.00 2.87
1715 4745 3.198068 CACCCCGTATGTCATGAAGAAG 58.802 50.000 0.00 0.00 0.00 2.85
1785 4821 5.072329 CAGATATTTCTCCCTGGCCTTCTTA 59.928 44.000 3.32 0.00 0.00 2.10
1786 4822 5.672194 AGATATTTCTCCCTGGCCTTCTTAA 59.328 40.000 3.32 0.00 0.00 1.85
1789 4825 1.633945 TCTCCCTGGCCTTCTTAAACC 59.366 52.381 3.32 0.00 0.00 3.27
1879 4925 1.371558 GCGACTTGTCCCCTCAACT 59.628 57.895 0.00 0.00 0.00 3.16
1970 5117 5.356751 TGCGTGCAATCCATCTATTTTTACT 59.643 36.000 0.00 0.00 0.00 2.24
1995 5172 1.002033 AGAGCAGCAGCAAAAAGAACG 60.002 47.619 3.17 0.00 45.49 3.95
2014 5191 6.744112 AGAACGAAATGGATGAGATCTACTC 58.256 40.000 0.00 0.00 45.11 2.59
2039 5216 8.394877 TCATGCTAAACTTAATTACATTGTCCG 58.605 33.333 0.00 0.00 0.00 4.79
2042 5219 7.820386 TGCTAAACTTAATTACATTGTCCGAGA 59.180 33.333 0.00 0.00 0.00 4.04
2066 5245 4.328440 GGCGGAGATTCTTATCAATCATCG 59.672 45.833 0.00 0.00 35.51 3.84
2090 5269 7.016361 GACACAAATAAATTATGTCGAGGCT 57.984 36.000 0.00 0.00 30.98 4.58
2091 5270 7.391148 ACACAAATAAATTATGTCGAGGCTT 57.609 32.000 0.00 0.00 0.00 4.35
2092 5271 7.826690 ACACAAATAAATTATGTCGAGGCTTT 58.173 30.769 0.00 0.00 0.00 3.51
2099 5278 6.670077 AATTATGTCGAGGCTTTTCTTCTC 57.330 37.500 0.00 0.00 0.00 2.87
2108 5287 1.806542 GCTTTTCTTCTCGGCATCACA 59.193 47.619 0.00 0.00 0.00 3.58
2161 5387 2.182014 GCACCGAAAAACAACAGTGTC 58.818 47.619 0.00 0.00 36.80 3.67
2162 5388 2.414824 GCACCGAAAAACAACAGTGTCA 60.415 45.455 0.00 0.00 36.80 3.58
2163 5389 3.425404 CACCGAAAAACAACAGTGTCAG 58.575 45.455 0.00 0.00 36.80 3.51
2164 5390 3.078837 ACCGAAAAACAACAGTGTCAGT 58.921 40.909 0.00 0.00 36.80 3.41
2165 5391 3.119990 ACCGAAAAACAACAGTGTCAGTG 60.120 43.478 6.10 6.10 36.80 3.66
2166 5392 3.119990 CCGAAAAACAACAGTGTCAGTGT 60.120 43.478 7.53 7.53 36.80 3.55
2167 5393 3.845775 CGAAAAACAACAGTGTCAGTGTG 59.154 43.478 14.07 10.49 36.80 3.82
2310 5743 2.428890 GAGGAGGACGTCAATCACTGAT 59.571 50.000 18.91 0.14 36.14 2.90
2314 5747 2.167281 AGGACGTCAATCACTGATGAGG 59.833 50.000 18.91 1.96 42.87 3.86
2315 5748 2.544685 GACGTCAATCACTGATGAGGG 58.455 52.381 11.55 0.00 42.87 4.30
2316 5749 1.902508 ACGTCAATCACTGATGAGGGT 59.097 47.619 1.10 0.00 42.87 4.34
2317 5750 2.093973 ACGTCAATCACTGATGAGGGTC 60.094 50.000 1.10 0.00 42.87 4.46
2318 5751 2.544685 GTCAATCACTGATGAGGGTCG 58.455 52.381 0.00 0.00 38.57 4.79
2319 5752 1.482182 TCAATCACTGATGAGGGTCGG 59.518 52.381 0.00 0.00 38.57 4.79
2354 5827 1.101635 TGGAGTAGAGATGGGCGACG 61.102 60.000 0.00 0.00 0.00 5.12
2359 5832 4.148825 GAGATGGGCGACGTGGCT 62.149 66.667 22.08 2.10 44.11 4.75
2467 8187 7.166691 ACAAACAACCATATCTAGTACGAGT 57.833 36.000 2.75 0.00 0.00 4.18
2469 8189 8.186821 ACAAACAACCATATCTAGTACGAGTAC 58.813 37.037 5.32 5.32 36.35 2.73
2471 8191 7.493743 ACAACCATATCTAGTACGAGTACAG 57.506 40.000 14.83 10.13 38.48 2.74
2472 8192 6.485984 ACAACCATATCTAGTACGAGTACAGG 59.514 42.308 14.83 7.49 38.48 4.00
2502 8227 9.686683 AGCATTTTTAATGAACATAGTACTCCT 57.313 29.630 0.00 0.00 0.00 3.69
2542 8274 6.311445 GGTTATATCTTGATGAGCATGTACGG 59.689 42.308 0.00 0.00 0.00 4.02
2544 8276 3.443099 TCTTGATGAGCATGTACGGAG 57.557 47.619 0.00 0.00 0.00 4.63
2545 8277 1.863454 CTTGATGAGCATGTACGGAGC 59.137 52.381 0.00 0.00 0.00 4.70
2546 8278 0.104855 TGATGAGCATGTACGGAGCC 59.895 55.000 0.00 0.00 0.00 4.70
2547 8279 0.390860 GATGAGCATGTACGGAGCCT 59.609 55.000 0.00 0.00 0.00 4.58
2548 8280 1.613925 GATGAGCATGTACGGAGCCTA 59.386 52.381 0.00 0.00 0.00 3.93
2549 8281 1.704641 TGAGCATGTACGGAGCCTAT 58.295 50.000 0.00 0.00 0.00 2.57
2550 8282 2.871453 TGAGCATGTACGGAGCCTATA 58.129 47.619 0.00 0.00 0.00 1.31
2552 8284 3.444034 TGAGCATGTACGGAGCCTATATC 59.556 47.826 0.00 0.00 0.00 1.63
2590 8328 3.593096 TCAATAGCATCGATGATGAGGC 58.407 45.455 29.20 12.24 45.49 4.70
2618 8356 1.541233 CCGTGGAAGAGAGCACAAAGT 60.541 52.381 0.00 0.00 0.00 2.66
2643 8381 2.223340 GGTGCGAGCAATAATGTTCAGG 60.223 50.000 0.00 0.00 36.66 3.86
2659 8397 4.280677 TGTTCAGGTTTAATTCTTGGCCAG 59.719 41.667 5.11 0.00 0.00 4.85
2697 8435 4.009675 TGATTGGTGGAGACATAAACAGC 58.990 43.478 0.00 0.00 46.14 4.40
2717 8455 4.074970 AGCAAGTGATACCAAGTTGAAGG 58.925 43.478 3.87 0.00 0.00 3.46
2719 8457 3.073274 AGTGATACCAAGTTGAAGGGC 57.927 47.619 3.87 0.00 0.00 5.19
2741 8480 3.704800 AAAAAGCTACTCCCTCTGTCC 57.295 47.619 0.00 0.00 0.00 4.02
2742 8481 1.574263 AAAGCTACTCCCTCTGTCCC 58.426 55.000 0.00 0.00 0.00 4.46
2743 8482 0.413832 AAGCTACTCCCTCTGTCCCA 59.586 55.000 0.00 0.00 0.00 4.37
2744 8483 0.413832 AGCTACTCCCTCTGTCCCAA 59.586 55.000 0.00 0.00 0.00 4.12
2745 8484 1.203313 AGCTACTCCCTCTGTCCCAAA 60.203 52.381 0.00 0.00 0.00 3.28
2746 8485 1.628846 GCTACTCCCTCTGTCCCAAAA 59.371 52.381 0.00 0.00 0.00 2.44
2747 8486 2.239907 GCTACTCCCTCTGTCCCAAAAT 59.760 50.000 0.00 0.00 0.00 1.82
2748 8487 2.887151 ACTCCCTCTGTCCCAAAATG 57.113 50.000 0.00 0.00 0.00 2.32
2749 8488 2.065799 ACTCCCTCTGTCCCAAAATGT 58.934 47.619 0.00 0.00 0.00 2.71
2750 8489 3.256704 ACTCCCTCTGTCCCAAAATGTA 58.743 45.455 0.00 0.00 0.00 2.29
2751 8490 3.655777 ACTCCCTCTGTCCCAAAATGTAA 59.344 43.478 0.00 0.00 0.00 2.41
2752 8491 4.263506 ACTCCCTCTGTCCCAAAATGTAAG 60.264 45.833 0.00 0.00 0.00 2.34
2753 8492 3.913799 TCCCTCTGTCCCAAAATGTAAGA 59.086 43.478 0.00 0.00 0.00 2.10
2754 8493 4.010349 CCCTCTGTCCCAAAATGTAAGAC 58.990 47.826 0.00 0.00 0.00 3.01
2755 8494 3.684788 CCTCTGTCCCAAAATGTAAGACG 59.315 47.826 0.00 0.00 0.00 4.18
2756 8495 4.315803 CTCTGTCCCAAAATGTAAGACGT 58.684 43.478 0.00 0.00 0.00 4.34
2757 8496 4.710324 TCTGTCCCAAAATGTAAGACGTT 58.290 39.130 0.00 0.00 0.00 3.99
2758 8497 5.127491 TCTGTCCCAAAATGTAAGACGTTT 58.873 37.500 0.00 0.00 38.84 3.60
2759 8498 5.591067 TCTGTCCCAAAATGTAAGACGTTTT 59.409 36.000 4.14 4.14 45.25 2.43
2760 8499 6.095720 TCTGTCCCAAAATGTAAGACGTTTTT 59.904 34.615 6.77 0.00 42.72 1.94
2780 8519 6.675413 TTTTTAGGCTTACACTAGGTCTCA 57.325 37.500 0.00 0.00 0.00 3.27
2781 8520 6.675413 TTTTAGGCTTACACTAGGTCTCAA 57.325 37.500 0.00 0.00 0.00 3.02
2792 8531 5.981915 ACACTAGGTCTCAAAAACGTCTTAC 59.018 40.000 0.00 0.00 0.00 2.34
2796 8535 6.937436 AGGTCTCAAAAACGTCTTACATTT 57.063 33.333 0.00 0.00 0.00 2.32
2797 8536 7.329588 AGGTCTCAAAAACGTCTTACATTTT 57.670 32.000 0.00 0.00 0.00 1.82
2800 8539 6.416750 GTCTCAAAAACGTCTTACATTTTGGG 59.583 38.462 16.62 14.62 42.06 4.12
2801 8540 6.319152 TCTCAAAAACGTCTTACATTTTGGGA 59.681 34.615 15.88 15.88 45.21 4.37
2802 8541 6.267070 TCAAAAACGTCTTACATTTTGGGAC 58.733 36.000 16.62 0.00 41.04 4.46
2806 8545 3.267483 CGTCTTACATTTTGGGACGGAT 58.733 45.455 0.00 0.00 43.69 4.18
2855 8594 6.754209 CAGAAATGCTAGAAGTCTGACGTTAT 59.246 38.462 8.06 0.00 38.37 1.89
2880 8619 6.567687 TTTTTAGACGATCAGATTTGCCAA 57.432 33.333 0.00 0.00 0.00 4.52
2896 8635 4.159377 TGCCAAGCGAAAACAGATAAAG 57.841 40.909 0.00 0.00 0.00 1.85
2900 8639 4.382754 CCAAGCGAAAACAGATAAAGTTGC 59.617 41.667 0.00 0.00 0.00 4.17
2915 8654 1.881973 AGTTGCCATGCTTGTGTGTAG 59.118 47.619 0.00 0.00 0.00 2.74
2944 8683 9.410556 CTTCCATGTTCTTACAGTAAAAATTGG 57.589 33.333 5.51 5.51 37.77 3.16
2969 8708 3.922240 TGTAGCGTAAAAGATCGACCAAC 59.078 43.478 0.00 0.00 0.00 3.77
2986 8725 5.149973 ACCAACAAATTATCATGCTGCAA 57.850 34.783 6.36 0.00 0.00 4.08
2996 8735 9.964303 AAATTATCATGCTGCAACGATTAATTA 57.036 25.926 19.05 3.01 0.00 1.40
3011 8750 6.759356 ACGATTAATTACCATGTGTTCGATCA 59.241 34.615 0.00 0.00 0.00 2.92
3017 8756 4.753516 ACCATGTGTTCGATCAGGATAA 57.246 40.909 7.13 0.00 0.00 1.75
3021 8760 5.353956 CCATGTGTTCGATCAGGATAAAACA 59.646 40.000 0.00 5.36 0.00 2.83
3027 8766 5.880164 TCGATCAGGATAAAACATACCCA 57.120 39.130 0.00 0.00 0.00 4.51
3040 8779 7.494922 AAAACATACCCAATCATAGCCTTTT 57.505 32.000 0.00 0.00 0.00 2.27
3066 8805 8.677300 TGTCAGATTTATATTCAAGTCCTTTGC 58.323 33.333 0.00 0.00 36.70 3.68
3069 8808 8.348507 CAGATTTATATTCAAGTCCTTTGCTCC 58.651 37.037 0.00 0.00 36.70 4.70
3070 8809 6.677781 TTTATATTCAAGTCCTTTGCTCCG 57.322 37.500 0.00 0.00 36.70 4.63
3071 8810 1.826385 ATTCAAGTCCTTTGCTCCGG 58.174 50.000 0.00 0.00 36.70 5.14
3072 8811 0.889186 TTCAAGTCCTTTGCTCCGGC 60.889 55.000 0.00 0.00 36.70 6.13
3073 8812 2.034221 AAGTCCTTTGCTCCGGCC 59.966 61.111 0.00 0.00 37.74 6.13
3114 8853 0.746923 GATCCTACCCGCAACCCAAC 60.747 60.000 0.00 0.00 0.00 3.77
3115 8854 1.205460 ATCCTACCCGCAACCCAACT 61.205 55.000 0.00 0.00 0.00 3.16
3116 8855 1.074248 CCTACCCGCAACCCAACTT 59.926 57.895 0.00 0.00 0.00 2.66
3117 8856 1.241315 CCTACCCGCAACCCAACTTG 61.241 60.000 0.00 0.00 0.00 3.16
3118 8857 1.228306 TACCCGCAACCCAACTTGG 60.228 57.895 0.12 0.12 37.25 3.61
3119 8858 1.997256 TACCCGCAACCCAACTTGGT 61.997 55.000 7.06 0.00 41.55 3.67
3120 8859 1.228306 CCCGCAACCCAACTTGGTA 60.228 57.895 7.06 0.00 37.76 3.25
3121 8860 0.824182 CCCGCAACCCAACTTGGTAA 60.824 55.000 7.06 0.00 37.76 2.85
3122 8861 0.596082 CCGCAACCCAACTTGGTAAG 59.404 55.000 7.06 0.00 37.76 2.34
3123 8862 1.314730 CGCAACCCAACTTGGTAAGT 58.685 50.000 7.06 0.00 45.46 2.24
3124 8863 1.265905 CGCAACCCAACTTGGTAAGTC 59.734 52.381 7.06 0.00 41.91 3.01
3125 8864 2.583143 GCAACCCAACTTGGTAAGTCT 58.417 47.619 7.06 0.00 41.91 3.24
3126 8865 3.746940 GCAACCCAACTTGGTAAGTCTA 58.253 45.455 7.06 0.00 41.91 2.59
3127 8866 4.139038 GCAACCCAACTTGGTAAGTCTAA 58.861 43.478 7.06 0.00 41.91 2.10
3128 8867 4.765339 GCAACCCAACTTGGTAAGTCTAAT 59.235 41.667 7.06 0.00 41.91 1.73
3129 8868 5.106277 GCAACCCAACTTGGTAAGTCTAATC 60.106 44.000 7.06 0.00 41.91 1.75
3130 8869 4.828829 ACCCAACTTGGTAAGTCTAATCG 58.171 43.478 7.06 0.00 41.91 3.34
3131 8870 4.285260 ACCCAACTTGGTAAGTCTAATCGT 59.715 41.667 7.06 0.00 41.91 3.73
3132 8871 4.630069 CCCAACTTGGTAAGTCTAATCGTG 59.370 45.833 7.06 0.00 41.91 4.35
3133 8872 4.092968 CCAACTTGGTAAGTCTAATCGTGC 59.907 45.833 0.00 0.00 41.91 5.34
3134 8873 4.530710 ACTTGGTAAGTCTAATCGTGCA 57.469 40.909 0.00 0.00 37.02 4.57
3135 8874 4.890088 ACTTGGTAAGTCTAATCGTGCAA 58.110 39.130 0.00 0.00 37.02 4.08
3136 8875 4.929808 ACTTGGTAAGTCTAATCGTGCAAG 59.070 41.667 0.00 0.00 37.02 4.01
3137 8876 4.794278 TGGTAAGTCTAATCGTGCAAGA 57.206 40.909 4.40 4.40 0.00 3.02
3138 8877 5.339008 TGGTAAGTCTAATCGTGCAAGAT 57.661 39.130 9.51 9.51 0.00 2.40
3139 8878 5.730550 TGGTAAGTCTAATCGTGCAAGATT 58.269 37.500 27.06 27.06 42.77 2.40
3140 8879 6.170506 TGGTAAGTCTAATCGTGCAAGATTT 58.829 36.000 28.62 15.35 40.83 2.17
3141 8880 7.324935 TGGTAAGTCTAATCGTGCAAGATTTA 58.675 34.615 28.62 16.74 40.83 1.40
3142 8881 7.985184 TGGTAAGTCTAATCGTGCAAGATTTAT 59.015 33.333 28.62 11.21 40.83 1.40
3143 8882 9.472361 GGTAAGTCTAATCGTGCAAGATTTATA 57.528 33.333 28.62 13.28 40.83 0.98
3147 8886 9.764363 AGTCTAATCGTGCAAGATTTATATTCA 57.236 29.630 28.62 11.35 40.83 2.57
3152 8891 7.246674 TCGTGCAAGATTTATATTCAAGTCC 57.753 36.000 0.00 0.00 0.00 3.85
3153 8892 7.047891 TCGTGCAAGATTTATATTCAAGTCCT 58.952 34.615 0.00 0.00 0.00 3.85
3154 8893 7.552687 TCGTGCAAGATTTATATTCAAGTCCTT 59.447 33.333 0.00 0.00 0.00 3.36
3155 8894 8.184192 CGTGCAAGATTTATATTCAAGTCCTTT 58.816 33.333 0.00 0.00 0.00 3.11
3156 8895 9.294030 GTGCAAGATTTATATTCAAGTCCTTTG 57.706 33.333 0.00 0.00 38.17 2.77
3157 8896 9.023962 TGCAAGATTTATATTCAAGTCCTTTGT 57.976 29.630 0.00 0.00 38.01 2.83
3158 8897 9.860898 GCAAGATTTATATTCAAGTCCTTTGTT 57.139 29.630 0.00 0.00 38.01 2.83
3161 8900 8.893727 AGATTTATATTCAAGTCCTTTGTTCCG 58.106 33.333 0.00 0.00 38.01 4.30
3162 8901 6.995511 TTATATTCAAGTCCTTTGTTCCGG 57.004 37.500 0.00 0.00 38.01 5.14
3163 8902 1.314730 TTCAAGTCCTTTGTTCCGGC 58.685 50.000 0.00 0.00 38.01 6.13
3164 8903 0.536460 TCAAGTCCTTTGTTCCGGCC 60.536 55.000 0.00 0.00 38.01 6.13
3165 8904 1.228459 AAGTCCTTTGTTCCGGCCC 60.228 57.895 0.00 0.00 0.00 5.80
3166 8905 3.053896 GTCCTTTGTTCCGGCCCG 61.054 66.667 0.00 0.00 0.00 6.13
3167 8906 3.243053 TCCTTTGTTCCGGCCCGA 61.243 61.111 3.71 0.00 0.00 5.14
3168 8907 2.045340 CCTTTGTTCCGGCCCGAT 60.045 61.111 3.71 0.00 0.00 4.18
3169 8908 2.406616 CCTTTGTTCCGGCCCGATG 61.407 63.158 3.71 0.00 0.00 3.84
3170 8909 3.051392 CTTTGTTCCGGCCCGATGC 62.051 63.158 3.71 0.00 40.16 3.91
3171 8910 3.561120 TTTGTTCCGGCCCGATGCT 62.561 57.895 3.71 0.00 40.92 3.79
3172 8911 2.186602 TTTGTTCCGGCCCGATGCTA 62.187 55.000 3.71 0.00 40.92 3.49
3173 8912 1.978455 TTGTTCCGGCCCGATGCTAT 61.978 55.000 3.71 0.00 40.92 2.97
3174 8913 1.668151 GTTCCGGCCCGATGCTATC 60.668 63.158 3.71 0.00 40.92 2.08
3175 8914 2.879233 TTCCGGCCCGATGCTATCC 61.879 63.158 3.71 0.00 40.92 2.59
3176 8915 4.394712 CCGGCCCGATGCTATCCC 62.395 72.222 3.71 0.00 40.92 3.85
3177 8916 3.314331 CGGCCCGATGCTATCCCT 61.314 66.667 0.00 0.00 40.92 4.20
3178 8917 2.348998 GGCCCGATGCTATCCCTG 59.651 66.667 0.00 0.00 40.92 4.45
3179 8918 2.520536 GGCCCGATGCTATCCCTGT 61.521 63.158 0.00 0.00 40.92 4.00
3180 8919 1.004440 GCCCGATGCTATCCCTGTC 60.004 63.158 0.00 0.00 36.87 3.51
3181 8920 1.674057 CCCGATGCTATCCCTGTCC 59.326 63.158 0.00 0.00 0.00 4.02
3182 8921 1.674057 CCGATGCTATCCCTGTCCC 59.326 63.158 0.00 0.00 0.00 4.46
3183 8922 0.833834 CCGATGCTATCCCTGTCCCT 60.834 60.000 0.00 0.00 0.00 4.20
3184 8923 1.550179 CCGATGCTATCCCTGTCCCTA 60.550 57.143 0.00 0.00 0.00 3.53
3185 8924 2.248248 CGATGCTATCCCTGTCCCTAA 58.752 52.381 0.00 0.00 0.00 2.69
3186 8925 2.232452 CGATGCTATCCCTGTCCCTAAG 59.768 54.545 0.00 0.00 0.00 2.18
3187 8926 3.511477 GATGCTATCCCTGTCCCTAAGA 58.489 50.000 0.00 0.00 0.00 2.10
3188 8927 3.637821 TGCTATCCCTGTCCCTAAGAT 57.362 47.619 0.00 0.00 0.00 2.40
3189 8928 3.511477 TGCTATCCCTGTCCCTAAGATC 58.489 50.000 0.00 0.00 0.00 2.75
3190 8929 2.835156 GCTATCCCTGTCCCTAAGATCC 59.165 54.545 0.00 0.00 0.00 3.36
3191 8930 3.503227 GCTATCCCTGTCCCTAAGATCCT 60.503 52.174 0.00 0.00 0.00 3.24
3192 8931 4.264442 GCTATCCCTGTCCCTAAGATCCTA 60.264 50.000 0.00 0.00 0.00 2.94
3193 8932 3.614568 TCCCTGTCCCTAAGATCCTAC 57.385 52.381 0.00 0.00 0.00 3.18
3194 8933 2.179424 TCCCTGTCCCTAAGATCCTACC 59.821 54.545 0.00 0.00 0.00 3.18
3195 8934 2.610873 CCTGTCCCTAAGATCCTACCC 58.389 57.143 0.00 0.00 0.00 3.69
3196 8935 2.240279 CTGTCCCTAAGATCCTACCCG 58.760 57.143 0.00 0.00 0.00 5.28
3197 8936 0.967662 GTCCCTAAGATCCTACCCGC 59.032 60.000 0.00 0.00 0.00 6.13
3198 8937 0.178941 TCCCTAAGATCCTACCCGCC 60.179 60.000 0.00 0.00 0.00 6.13
3199 8938 0.471211 CCCTAAGATCCTACCCGCCA 60.471 60.000 0.00 0.00 0.00 5.69
3200 8939 0.680061 CCTAAGATCCTACCCGCCAC 59.320 60.000 0.00 0.00 0.00 5.01
3387 9129 8.742777 ACACTTGTATATGCTGAAAATCATGTT 58.257 29.630 0.00 0.00 0.00 2.71
3391 9133 9.734620 TTGTATATGCTGAAAATCATGTTTAGC 57.265 29.630 0.00 0.00 0.00 3.09
3395 9137 7.636150 ATGCTGAAAATCATGTTTAGCTAGT 57.364 32.000 5.94 0.00 0.00 2.57
3396 9138 8.737168 ATGCTGAAAATCATGTTTAGCTAGTA 57.263 30.769 5.94 0.00 0.00 1.82
3559 9437 8.773404 ACCATATCTAGTACAAAATAATCGGC 57.227 34.615 0.00 0.00 0.00 5.54
3588 9466 4.014406 GTGGAATTTCTTATGACGGGGTT 58.986 43.478 0.00 0.00 0.00 4.11
3589 9467 4.461431 GTGGAATTTCTTATGACGGGGTTT 59.539 41.667 0.00 0.00 0.00 3.27
3601 9479 1.271379 ACGGGGTTTGTGATGAAGAGG 60.271 52.381 0.00 0.00 0.00 3.69
3638 9516 1.363744 CAGTGGATGAAGACGAAGCC 58.636 55.000 0.00 0.00 0.00 4.35
3641 9519 0.173481 TGGATGAAGACGAAGCCGAG 59.827 55.000 0.00 0.00 39.50 4.63
3642 9520 1.148759 GGATGAAGACGAAGCCGAGC 61.149 60.000 0.00 0.00 39.50 5.03
3660 9601 3.305064 CGAGCTAGTAAGAAGATGGAGCC 60.305 52.174 0.00 0.00 0.00 4.70
3663 9604 3.551250 GCTAGTAAGAAGATGGAGCCGTC 60.551 52.174 0.32 0.32 0.00 4.79
3705 9646 3.577805 ACATTATGACTTGGCTACCCC 57.422 47.619 0.00 0.00 0.00 4.95
3710 9651 1.272807 TGACTTGGCTACCCCTGTAC 58.727 55.000 0.00 0.00 0.00 2.90
3726 9667 0.525668 GTACACTGCCGATCGTCAGG 60.526 60.000 27.67 18.93 34.76 3.86
3727 9668 1.663379 TACACTGCCGATCGTCAGGG 61.663 60.000 25.60 25.60 39.52 4.45
3745 9686 4.229812 TCAGGGAACATCCAGAGTCTACTA 59.770 45.833 0.00 0.00 38.64 1.82
3767 9708 4.336889 TTGTGTTCTCGTCTTCCTTGAT 57.663 40.909 0.00 0.00 0.00 2.57
3769 9710 3.320826 TGTGTTCTCGTCTTCCTTGATGA 59.679 43.478 0.00 0.00 0.00 2.92
3780 9721 1.066858 TCCTTGATGAAGACGAGCACC 60.067 52.381 0.00 0.00 0.00 5.01
3802 9743 4.494484 CGTGAGAGTGATGTTGGTTCATA 58.506 43.478 0.00 0.00 0.00 2.15
3838 9779 4.181309 GAGTCTCTCGGTGAAAAGATGT 57.819 45.455 0.00 0.00 0.00 3.06
3840 9781 3.322254 AGTCTCTCGGTGAAAAGATGTGT 59.678 43.478 0.00 0.00 0.00 3.72
3841 9782 3.675698 GTCTCTCGGTGAAAAGATGTGTC 59.324 47.826 0.00 0.00 0.00 3.67
3842 9783 3.574396 TCTCTCGGTGAAAAGATGTGTCT 59.426 43.478 0.00 0.00 35.82 3.41
3844 9785 3.574396 TCTCGGTGAAAAGATGTGTCTCT 59.426 43.478 0.00 0.00 32.15 3.10
3846 9787 3.574396 TCGGTGAAAAGATGTGTCTCTCT 59.426 43.478 0.00 0.00 32.15 3.10
3848 9789 4.752101 CGGTGAAAAGATGTGTCTCTCTTT 59.248 41.667 0.00 0.00 42.09 2.52
3849 9790 5.926542 CGGTGAAAAGATGTGTCTCTCTTTA 59.073 40.000 0.00 0.00 40.02 1.85
3850 9791 6.423905 CGGTGAAAAGATGTGTCTCTCTTTAA 59.576 38.462 0.00 0.00 40.02 1.52
3863 9805 6.038271 TGTCTCTCTTTAAAGACACTTTTGCC 59.962 38.462 13.99 0.00 45.18 4.52
3864 9806 6.038271 GTCTCTCTTTAAAGACACTTTTGCCA 59.962 38.462 13.99 0.00 41.26 4.92
3891 9833 4.410492 ACTCTTTAGCAGCACGATTTTG 57.590 40.909 0.00 0.00 0.00 2.44
3930 9872 2.208527 TCCCCCGGAGATTTCTTCG 58.791 57.895 0.73 1.11 44.34 3.79
3931 9873 0.616679 TCCCCCGGAGATTTCTTCGT 60.617 55.000 0.73 0.00 43.25 3.85
3942 9884 4.569943 AGATTTCTTCGTGTGTGTGCTAT 58.430 39.130 0.00 0.00 0.00 2.97
3965 9908 9.333724 CTATGTAATAATCATATGAGGCATGCA 57.666 33.333 21.36 7.84 0.00 3.96
3973 9916 6.505044 TCATATGAGGCATGCATGTTTATC 57.495 37.500 26.79 18.59 0.00 1.75
3989 9932 8.298854 GCATGTTTATCCAATCATTAGTATGCA 58.701 33.333 0.00 0.00 0.00 3.96
4007 9950 8.922931 AGTATGCATGACAATTTATATGTGGA 57.077 30.769 10.16 0.00 0.00 4.02
4021 9964 9.730420 ATTTATATGTGGATAAAGCAAAACGAC 57.270 29.630 0.00 0.00 35.34 4.34
4024 9967 3.560481 TGTGGATAAAGCAAAACGACGAA 59.440 39.130 0.00 0.00 0.00 3.85
4026 9969 3.058777 TGGATAAAGCAAAACGACGAACC 60.059 43.478 0.00 0.00 0.00 3.62
4027 9970 3.058777 GGATAAAGCAAAACGACGAACCA 60.059 43.478 0.00 0.00 0.00 3.67
4028 9971 4.379082 GGATAAAGCAAAACGACGAACCAT 60.379 41.667 0.00 0.00 0.00 3.55
4030 9973 4.555348 AAAGCAAAACGACGAACCATAA 57.445 36.364 0.00 0.00 0.00 1.90
4031 9974 3.806316 AGCAAAACGACGAACCATAAG 57.194 42.857 0.00 0.00 0.00 1.73
4038 9981 3.846360 ACGACGAACCATAAGAAAGGAG 58.154 45.455 0.00 0.00 0.00 3.69
4044 9987 4.093556 CGAACCATAAGAAAGGAGTTGCTC 59.906 45.833 0.00 0.00 0.00 4.26
4059 10002 0.698238 TGCTCCCAGTTGGCAATAGT 59.302 50.000 1.92 0.00 32.79 2.12
4100 10043 5.201243 GACTAAACTTCCCCTATGCCAAAT 58.799 41.667 0.00 0.00 0.00 2.32
4103 10046 5.841267 AAACTTCCCCTATGCCAAATTTT 57.159 34.783 0.00 0.00 0.00 1.82
4108 10051 2.539476 CCCTATGCCAAATTTTCGCAC 58.461 47.619 11.00 0.00 34.87 5.34
4109 10052 2.094286 CCCTATGCCAAATTTTCGCACA 60.094 45.455 11.00 0.65 34.87 4.57
4114 10057 2.134346 GCCAAATTTTCGCACACACAT 58.866 42.857 2.75 0.00 0.00 3.21
4121 10064 4.566545 TTTTCGCACACACATCTTTGAT 57.433 36.364 0.00 0.00 0.00 2.57
4130 10073 5.463061 CACACACATCTTTGATTTCAAACCC 59.537 40.000 1.66 0.00 40.55 4.11
4141 10084 5.076182 TGATTTCAAACCCTGCATCTAACA 58.924 37.500 0.00 0.00 0.00 2.41
4148 10091 8.257602 TCAAACCCTGCATCTAACAGTATATA 57.742 34.615 0.00 0.00 33.09 0.86
4150 10093 9.155975 CAAACCCTGCATCTAACAGTATATATC 57.844 37.037 0.00 0.00 33.09 1.63
4151 10094 8.435931 AACCCTGCATCTAACAGTATATATCA 57.564 34.615 0.00 0.00 33.09 2.15
4152 10095 8.615360 ACCCTGCATCTAACAGTATATATCAT 57.385 34.615 0.00 0.00 33.09 2.45
4189 10139 5.862924 TGGAATGAACGAAGATCTTTCAC 57.137 39.130 9.87 3.08 42.37 3.18
4191 10141 6.697395 TGGAATGAACGAAGATCTTTCACTA 58.303 36.000 9.87 0.00 42.37 2.74
4237 10187 1.540267 TTACAATTGGGGTCGCCTTG 58.460 50.000 10.83 6.90 0.00 3.61
4263 10213 6.610075 ACAAACCTTTCATTGGCTATCATT 57.390 33.333 0.00 0.00 0.00 2.57
4264 10214 6.633856 ACAAACCTTTCATTGGCTATCATTC 58.366 36.000 0.00 0.00 0.00 2.67
4288 10238 3.546002 TTTGCCGAAAAACTATCACCG 57.454 42.857 0.00 0.00 0.00 4.94
4289 10239 2.459060 TGCCGAAAAACTATCACCGA 57.541 45.000 0.00 0.00 0.00 4.69
4291 10241 1.060122 GCCGAAAAACTATCACCGACG 59.940 52.381 0.00 0.00 0.00 5.12
4297 10247 2.935481 AACTATCACCGACGGACTTC 57.065 50.000 23.38 0.00 0.00 3.01
4299 10249 0.591741 CTATCACCGACGGACTTCGC 60.592 60.000 23.38 0.00 43.89 4.70
4300 10250 1.307355 TATCACCGACGGACTTCGCA 61.307 55.000 23.38 0.00 43.89 5.10
4312 10262 2.124903 GACTTCGCACTTCAGAAACGA 58.875 47.619 0.00 0.00 0.00 3.85
4324 10274 1.840741 CAGAAACGACGTCATAGAGCG 59.159 52.381 17.16 2.36 0.00 5.03
4327 10277 0.524862 AACGACGTCATAGAGCGGTT 59.475 50.000 17.16 5.89 0.00 4.44
4328 10278 1.372582 ACGACGTCATAGAGCGGTTA 58.627 50.000 17.16 0.00 0.00 2.85
4329 10279 1.329906 ACGACGTCATAGAGCGGTTAG 59.670 52.381 17.16 0.00 0.00 2.34
4350 10300 2.611292 GCTAGCGAGACATTGATGCTTT 59.389 45.455 0.00 0.00 37.12 3.51
4354 10304 3.375299 AGCGAGACATTGATGCTTTTACC 59.625 43.478 0.00 0.00 30.27 2.85
4356 10306 3.616821 CGAGACATTGATGCTTTTACCGA 59.383 43.478 0.00 0.00 0.00 4.69
4357 10307 4.492570 CGAGACATTGATGCTTTTACCGAC 60.493 45.833 0.00 0.00 0.00 4.79
4358 10308 4.323417 AGACATTGATGCTTTTACCGACA 58.677 39.130 0.00 0.00 0.00 4.35
4359 10309 4.759693 AGACATTGATGCTTTTACCGACAA 59.240 37.500 0.00 0.00 0.00 3.18
4360 10310 4.794169 ACATTGATGCTTTTACCGACAAC 58.206 39.130 0.00 0.00 0.00 3.32
4368 10318 4.859798 TGCTTTTACCGACAACAAAAACTG 59.140 37.500 0.00 0.00 0.00 3.16
4376 10326 4.095185 CCGACAACAAAAACTGTAGTTGGA 59.905 41.667 15.05 0.00 44.10 3.53
4388 10338 4.012374 CTGTAGTTGGACATGGCAATCTT 58.988 43.478 0.00 0.00 0.00 2.40
4423 10374 2.161030 TGTAACCCGTGGTTTTATGCC 58.839 47.619 12.63 0.00 44.33 4.40
4427 10378 1.341852 ACCCGTGGTTTTATGCCAAAC 59.658 47.619 0.00 0.00 37.81 2.93
4455 10407 5.316987 CCTAAATGTGGAGTGTTTTCCTCT 58.683 41.667 0.00 0.00 38.12 3.69
4464 10416 4.874396 GGAGTGTTTTCCTCTAAATACCCG 59.126 45.833 0.00 0.00 31.74 5.28
4479 10431 0.802494 ACCCGCGAATCATTTGTCAC 59.198 50.000 8.23 0.00 0.00 3.67
4501 10453 5.572896 CACGCTTTACTTTCCCATTTGATTC 59.427 40.000 0.00 0.00 0.00 2.52
4508 10460 5.009631 ACTTTCCCATTTGATTCATCGTCA 58.990 37.500 0.00 0.00 0.00 4.35
4543 10495 4.810491 CCATTTGATAATTTGCCCCTTTCG 59.190 41.667 0.00 0.00 0.00 3.46
4576 10528 1.450312 CGGATCCACCCTTCACTGC 60.450 63.158 13.41 0.00 34.64 4.40
4592 10544 2.283821 GCCACAATCCTGGGCCAA 60.284 61.111 8.04 0.00 41.90 4.52
4593 10545 1.912763 GCCACAATCCTGGGCCAAA 60.913 57.895 8.04 0.00 41.90 3.28
4594 10546 1.974543 CCACAATCCTGGGCCAAAC 59.025 57.895 8.04 0.00 0.00 2.93
4595 10547 1.543944 CCACAATCCTGGGCCAAACC 61.544 60.000 8.04 0.00 37.93 3.27
4596 10548 0.831288 CACAATCCTGGGCCAAACCA 60.831 55.000 8.04 0.00 42.05 3.67
4597 10549 0.116940 ACAATCCTGGGCCAAACCAT 59.883 50.000 8.04 0.00 40.36 3.55
4598 10550 0.826062 CAATCCTGGGCCAAACCATC 59.174 55.000 8.04 0.00 40.36 3.51
4599 10551 0.413037 AATCCTGGGCCAAACCATCA 59.587 50.000 8.04 0.00 40.36 3.07
4600 10552 0.413037 ATCCTGGGCCAAACCATCAA 59.587 50.000 8.04 0.00 40.36 2.57
4601 10553 0.189574 TCCTGGGCCAAACCATCAAA 59.810 50.000 8.04 0.00 40.36 2.69
4602 10554 1.055040 CCTGGGCCAAACCATCAAAA 58.945 50.000 8.04 0.00 40.36 2.44
4603 10555 1.629861 CCTGGGCCAAACCATCAAAAT 59.370 47.619 8.04 0.00 40.36 1.82
4604 10556 2.355007 CCTGGGCCAAACCATCAAAATC 60.355 50.000 8.04 0.00 40.36 2.17
4605 10557 1.627834 TGGGCCAAACCATCAAAATCC 59.372 47.619 2.13 0.00 42.05 3.01
4606 10558 1.065491 GGGCCAAACCATCAAAATCCC 60.065 52.381 4.39 0.00 42.05 3.85
4607 10559 1.908619 GGCCAAACCATCAAAATCCCT 59.091 47.619 0.00 0.00 38.86 4.20
4608 10560 2.093500 GGCCAAACCATCAAAATCCCTC 60.093 50.000 0.00 0.00 38.86 4.30
4609 10561 2.093500 GCCAAACCATCAAAATCCCTCC 60.093 50.000 0.00 0.00 0.00 4.30
4610 10562 2.166254 CCAAACCATCAAAATCCCTCCG 59.834 50.000 0.00 0.00 0.00 4.63
4611 10563 1.474330 AACCATCAAAATCCCTCCGC 58.526 50.000 0.00 0.00 0.00 5.54
4612 10564 0.748005 ACCATCAAAATCCCTCCGCG 60.748 55.000 0.00 0.00 0.00 6.46
4613 10565 0.463654 CCATCAAAATCCCTCCGCGA 60.464 55.000 8.23 0.00 0.00 5.87
4614 10566 0.657840 CATCAAAATCCCTCCGCGAC 59.342 55.000 8.23 0.00 0.00 5.19
4615 10567 0.463833 ATCAAAATCCCTCCGCGACC 60.464 55.000 8.23 0.00 0.00 4.79
4616 10568 2.125269 AAAATCCCTCCGCGACCG 60.125 61.111 8.23 0.00 0.00 4.79
4704 10665 3.368190 CTCCTCCTGACAGCAGCCG 62.368 68.421 0.00 0.00 40.91 5.52
5010 11013 1.821216 TTTCTGCAAAGTCGATCCCC 58.179 50.000 0.00 0.00 0.00 4.81
5029 11032 1.135939 GTCGCGGTGGTTTATTGCC 59.864 57.895 6.13 0.00 0.00 4.52
5034 11037 2.267426 GCGGTGGTTTATTGCCAAATC 58.733 47.619 0.00 0.00 37.81 2.17
5055 11058 2.223572 CCTCTTGTTGCTGTGTCAAACC 60.224 50.000 0.00 0.00 0.00 3.27
5074 11077 4.386867 ACCTCAGTATGTTGGTCGTATG 57.613 45.455 0.00 0.00 39.04 2.39
5100 11104 3.399330 CAATGTTTCAGTACCTGACCGT 58.601 45.455 0.00 0.00 40.46 4.83
5265 11278 0.384725 CCGTTTGCTGCTTCTGAACG 60.385 55.000 0.00 9.43 41.77 3.95
5403 11444 4.577693 TGCCTGCTTATTCTTTGCATAGAG 59.422 41.667 6.95 0.00 36.07 2.43
5621 11740 5.339530 CCCAAGGACCTTGTCTTATTCTCAT 60.340 44.000 28.45 0.00 39.58 2.90
5812 11979 6.811253 ACTTTGTTGTTTTCACTGTCAGTA 57.189 33.333 4.85 0.00 0.00 2.74
5902 12073 6.151312 TGACTAGAATTCGTGGATATCTAGGC 59.849 42.308 11.52 9.36 45.12 3.93
5906 12077 5.992217 AGAATTCGTGGATATCTAGGCAAAC 59.008 40.000 2.05 0.00 0.00 2.93
5913 12084 5.049405 GTGGATATCTAGGCAAACATTTCCG 60.049 44.000 2.05 0.00 0.00 4.30
5972 12169 5.123936 TCTCTGCTGATTTCGCTAGTACTA 58.876 41.667 1.89 1.89 0.00 1.82
6070 12275 2.417243 GGAACCTTGCCATGCACAATAC 60.417 50.000 0.00 0.00 38.71 1.89
6118 12323 0.842635 ATCTCCAAGATGGCTGGTCC 59.157 55.000 0.00 0.00 37.47 4.46
6495 12721 2.576615 ACTTCCTTGACTTGCTGGTTC 58.423 47.619 0.00 0.00 0.00 3.62
6496 12722 1.882623 CTTCCTTGACTTGCTGGTTCC 59.117 52.381 0.00 0.00 0.00 3.62
6534 12768 5.631992 TCGCAATTGCATTTTGTAATCGTA 58.368 33.333 28.77 0.00 42.21 3.43
6650 12884 0.959372 AAGCTGCAGGCAAGCTGTAG 60.959 55.000 17.12 4.84 44.79 2.74
7138 13804 6.483307 CAGAATACATACACCACACCCTTATG 59.517 42.308 0.00 0.00 0.00 1.90
7151 13817 7.234988 ACCACACCCTTATGATAGTCTATTACC 59.765 40.741 0.00 0.00 0.00 2.85
7157 13823 9.273137 CCCTTATGATAGTCTATTACCTGGATT 57.727 37.037 0.00 0.00 0.00 3.01
7168 13834 8.170730 GTCTATTACCTGGATTGGGGATTTTAT 58.829 37.037 0.00 0.00 0.00 1.40
7169 13835 8.390921 TCTATTACCTGGATTGGGGATTTTATC 58.609 37.037 0.00 0.00 0.00 1.75
7322 13988 4.917385 TGTTTGCTATTGTGGTATGTCCT 58.083 39.130 0.00 0.00 37.07 3.85
7337 15940 1.480954 TGTCCTTCCGCCAACTAGATC 59.519 52.381 0.00 0.00 0.00 2.75
7471 16078 5.353394 TGGGTCATAATGTCTGAGGTAAC 57.647 43.478 0.00 0.00 0.00 2.50
7505 16113 3.489785 GCACACTGCGTATAGAACCATAC 59.510 47.826 0.00 0.00 31.71 2.39
7609 16218 1.407437 CCGGTTAGCATCAAGAGCCTT 60.407 52.381 0.00 0.00 0.00 4.35
7676 16285 5.278957 GGGATAACAATGACAGCAAACTTGT 60.279 40.000 0.00 0.00 0.00 3.16
7917 16709 1.428620 GTGAGCTCGGTCGGTAGTC 59.571 63.158 9.64 0.00 0.00 2.59
8006 16798 3.732212 TCGATGAAGGCCAATCATACAG 58.268 45.455 20.36 15.33 37.64 2.74
8013 16805 5.649395 TGAAGGCCAATCATACAGAAGAAAG 59.351 40.000 5.01 0.00 0.00 2.62
8070 16866 8.013947 CAGACATTGTTTCAGATGACTTTGTAG 58.986 37.037 0.00 0.00 0.00 2.74
8161 16975 2.086869 CCACTGTGATACCCTGCAAAG 58.913 52.381 9.86 0.00 0.00 2.77
8201 17017 9.109393 GACTAACAAGAAAATGTCATATGCCTA 57.891 33.333 0.00 0.00 31.81 3.93
8214 17030 6.211584 TGTCATATGCCTAAGATAAGGACCTC 59.788 42.308 0.00 0.00 39.15 3.85
8274 17508 2.420687 GGTGCACTCTATCCCTTCCTTG 60.421 54.545 17.98 0.00 0.00 3.61
8304 17538 4.686191 AGCAAGAGAGCACTGCTATATT 57.314 40.909 2.71 0.99 39.88 1.28
8316 17550 9.743057 GAGCACTGCTATATTATATTACCTCTG 57.257 37.037 2.71 0.00 39.88 3.35
8317 17551 9.261035 AGCACTGCTATATTATATTACCTCTGT 57.739 33.333 0.21 0.00 36.99 3.41
8318 17552 9.522804 GCACTGCTATATTATATTACCTCTGTC 57.477 37.037 0.00 0.00 0.00 3.51
8322 17556 9.901172 TGCTATATTATATTACCTCTGTCTCGA 57.099 33.333 0.00 0.00 0.00 4.04
8331 17565 6.585695 TTACCTCTGTCTCGAATTACTTGT 57.414 37.500 0.00 0.00 0.00 3.16
8332 17566 5.061920 ACCTCTGTCTCGAATTACTTGTC 57.938 43.478 0.00 0.00 0.00 3.18
8333 17567 4.767928 ACCTCTGTCTCGAATTACTTGTCT 59.232 41.667 0.00 0.00 0.00 3.41
8334 17568 5.244178 ACCTCTGTCTCGAATTACTTGTCTT 59.756 40.000 0.00 0.00 0.00 3.01
8335 17569 6.433404 ACCTCTGTCTCGAATTACTTGTCTTA 59.567 38.462 0.00 0.00 0.00 2.10
8336 17570 6.970043 CCTCTGTCTCGAATTACTTGTCTTAG 59.030 42.308 0.00 0.00 0.00 2.18
8337 17571 7.148222 CCTCTGTCTCGAATTACTTGTCTTAGA 60.148 40.741 0.00 0.00 0.00 2.10
8338 17572 8.282455 TCTGTCTCGAATTACTTGTCTTAGAT 57.718 34.615 0.00 0.00 0.00 1.98
8339 17573 8.740906 TCTGTCTCGAATTACTTGTCTTAGATT 58.259 33.333 0.00 0.00 0.00 2.40
8340 17574 9.360093 CTGTCTCGAATTACTTGTCTTAGATTT 57.640 33.333 0.00 0.00 0.00 2.17
8341 17575 9.140286 TGTCTCGAATTACTTGTCTTAGATTTG 57.860 33.333 0.00 0.00 0.00 2.32
8342 17576 9.141400 GTCTCGAATTACTTGTCTTAGATTTGT 57.859 33.333 0.00 0.00 0.00 2.83
8343 17577 9.355215 TCTCGAATTACTTGTCTTAGATTTGTC 57.645 33.333 0.00 0.00 0.00 3.18
8344 17578 9.360093 CTCGAATTACTTGTCTTAGATTTGTCT 57.640 33.333 0.00 0.00 0.00 3.41
8352 17586 8.407064 ACTTGTCTTAGATTTGTCTAGATACGG 58.593 37.037 0.00 0.00 0.00 4.02
8353 17587 8.515695 TTGTCTTAGATTTGTCTAGATACGGA 57.484 34.615 0.00 0.00 0.00 4.69
8354 17588 8.693120 TGTCTTAGATTTGTCTAGATACGGAT 57.307 34.615 0.00 0.00 0.00 4.18
8355 17589 8.568794 TGTCTTAGATTTGTCTAGATACGGATG 58.431 37.037 0.00 0.00 0.00 3.51
8356 17590 8.569641 GTCTTAGATTTGTCTAGATACGGATGT 58.430 37.037 0.00 0.00 0.00 3.06
8357 17591 8.568794 TCTTAGATTTGTCTAGATACGGATGTG 58.431 37.037 0.00 0.00 0.00 3.21
8358 17592 5.533482 AGATTTGTCTAGATACGGATGTGC 58.467 41.667 0.00 0.00 0.00 4.57
8359 17593 4.729227 TTTGTCTAGATACGGATGTGCA 57.271 40.909 0.00 0.00 0.00 4.57
8360 17594 4.729227 TTGTCTAGATACGGATGTGCAA 57.271 40.909 0.00 0.00 0.00 4.08
8361 17595 4.937201 TGTCTAGATACGGATGTGCAAT 57.063 40.909 0.00 0.00 0.00 3.56
8362 17596 5.276461 TGTCTAGATACGGATGTGCAATT 57.724 39.130 0.00 0.00 0.00 2.32
8395 17829 0.329596 GAGACAAACCTGGGCCTGAT 59.670 55.000 12.58 0.00 0.00 2.90
8441 17875 2.819595 GCCGCGCTCAGGAATCAA 60.820 61.111 5.56 0.00 0.00 2.57
8509 17943 0.392998 CATGGACCGTAGCAAAGCCT 60.393 55.000 0.00 0.00 0.00 4.58
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 2.105821 AGGTTTCGATTGTCCAACTGGA 59.894 45.455 0.00 0.00 43.08 3.86
24 25 6.294508 CCCTATTGTTTTCAGGTTTCGATTGT 60.295 38.462 0.00 0.00 0.00 2.71
49 50 1.134220 TCCCGGCAACCATTGACTATC 60.134 52.381 0.00 0.00 36.19 2.08
95 96 8.859090 CATGGACTAATCTCTCTCTATCTTGTT 58.141 37.037 0.00 0.00 0.00 2.83
97 98 8.408043 ACATGGACTAATCTCTCTCTATCTTG 57.592 38.462 0.00 0.00 0.00 3.02
98 99 8.448008 AGACATGGACTAATCTCTCTCTATCTT 58.552 37.037 0.00 0.00 0.00 2.40
102 103 9.922477 TTTTAGACATGGACTAATCTCTCTCTA 57.078 33.333 12.87 0.00 31.34 2.43
108 109 8.994170 GCCTTATTTTAGACATGGACTAATCTC 58.006 37.037 12.87 0.00 31.34 2.75
109 110 8.718656 AGCCTTATTTTAGACATGGACTAATCT 58.281 33.333 12.87 1.93 31.34 2.40
110 111 8.910351 AGCCTTATTTTAGACATGGACTAATC 57.090 34.615 12.87 0.00 31.34 1.75
111 112 9.780186 GTAGCCTTATTTTAGACATGGACTAAT 57.220 33.333 12.87 5.80 31.34 1.73
112 113 8.208903 GGTAGCCTTATTTTAGACATGGACTAA 58.791 37.037 9.50 9.50 0.00 2.24
183 184 5.721000 TGGTCCTTATTTTTGGCATCTGATT 59.279 36.000 0.00 0.00 0.00 2.57
344 351 1.001633 ACGTAGTTAGGGTGCACTTGG 59.998 52.381 17.98 0.00 37.78 3.61
363 370 3.270877 CCCAATGCTTCACTGGTACTAC 58.729 50.000 0.00 0.00 27.55 2.73
364 371 2.910319 ACCCAATGCTTCACTGGTACTA 59.090 45.455 0.00 0.00 27.55 1.82
365 372 1.705186 ACCCAATGCTTCACTGGTACT 59.295 47.619 0.00 0.00 27.55 2.73
366 373 2.200373 ACCCAATGCTTCACTGGTAC 57.800 50.000 0.00 0.00 27.55 3.34
398 405 2.926586 GCACCGGATTTGCTTTCCTTTC 60.927 50.000 9.46 0.00 37.00 2.62
399 406 1.000843 GCACCGGATTTGCTTTCCTTT 59.999 47.619 9.46 0.00 37.00 3.11
400 407 0.603065 GCACCGGATTTGCTTTCCTT 59.397 50.000 9.46 0.00 37.00 3.36
402 409 4.889427 GCACCGGATTTGCTTTCC 57.111 55.556 9.46 0.00 37.00 3.13
427 434 2.422945 GGGGGCTCCGTTTTTAGATGAT 60.423 50.000 0.00 0.00 0.00 2.45
428 435 1.064979 GGGGGCTCCGTTTTTAGATGA 60.065 52.381 0.00 0.00 0.00 2.92
430 437 3.896854 GGGGGCTCCGTTTTTAGAT 57.103 52.632 0.00 0.00 0.00 1.98
445 452 3.793888 GGCCCTTACTGACGGGGG 61.794 72.222 0.00 0.00 40.95 5.40
446 453 4.157120 CGGCCCTTACTGACGGGG 62.157 72.222 0.00 0.00 40.95 5.73
447 454 4.157120 CCGGCCCTTACTGACGGG 62.157 72.222 0.00 0.00 43.60 5.28
452 459 2.070039 TGGATCCCGGCCCTTACTG 61.070 63.158 9.90 0.00 0.00 2.74
453 460 2.070650 GTGGATCCCGGCCCTTACT 61.071 63.158 9.90 0.00 0.00 2.24
454 461 2.509422 GTGGATCCCGGCCCTTAC 59.491 66.667 9.90 0.00 0.00 2.34
455 462 2.770904 GGTGGATCCCGGCCCTTA 60.771 66.667 9.90 0.00 0.00 2.69
486 493 1.107538 TCGTCCTCGATGGCCTTAGG 61.108 60.000 3.32 2.30 41.35 2.69
493 500 4.271816 CCGCCTCGTCCTCGATGG 62.272 72.222 0.00 0.00 45.21 3.51
494 501 4.933064 GCCGCCTCGTCCTCGATG 62.933 72.222 0.00 0.00 45.21 3.84
513 520 1.302192 TTCCTTTGCCTTCCGTCGG 60.302 57.895 4.39 4.39 0.00 4.79
515 522 1.241990 GGGTTCCTTTGCCTTCCGTC 61.242 60.000 0.00 0.00 0.00 4.79
517 524 0.326927 TAGGGTTCCTTTGCCTTCCG 59.673 55.000 0.00 0.00 34.61 4.30
519 526 1.819288 GCTTAGGGTTCCTTTGCCTTC 59.181 52.381 0.00 0.00 34.61 3.46
520 527 1.429299 AGCTTAGGGTTCCTTTGCCTT 59.571 47.619 0.00 0.00 34.61 4.35
521 528 1.076438 AGCTTAGGGTTCCTTTGCCT 58.924 50.000 0.00 0.00 34.61 4.75
522 529 1.924731 AAGCTTAGGGTTCCTTTGCC 58.075 50.000 0.00 0.00 34.61 4.52
523 530 3.574396 AGAAAAGCTTAGGGTTCCTTTGC 59.426 43.478 0.00 0.00 34.61 3.68
525 532 4.588951 CCAAGAAAAGCTTAGGGTTCCTTT 59.411 41.667 0.00 0.00 34.31 3.11
526 533 4.152647 CCAAGAAAAGCTTAGGGTTCCTT 58.847 43.478 0.00 0.00 34.31 3.36
527 534 3.500471 CCCAAGAAAAGCTTAGGGTTCCT 60.500 47.826 0.00 0.00 38.80 3.36
529 536 3.497332 ACCCAAGAAAAGCTTAGGGTTC 58.503 45.455 16.31 9.72 46.75 3.62
534 541 7.337942 ACAATCTCATACCCAAGAAAAGCTTAG 59.662 37.037 0.00 0.00 34.31 2.18
535 542 7.175104 ACAATCTCATACCCAAGAAAAGCTTA 58.825 34.615 0.00 0.00 34.31 3.09
538 545 5.904362 ACAATCTCATACCCAAGAAAAGC 57.096 39.130 0.00 0.00 0.00 3.51
539 546 8.454106 CAACTACAATCTCATACCCAAGAAAAG 58.546 37.037 0.00 0.00 0.00 2.27
540 547 7.942341 ACAACTACAATCTCATACCCAAGAAAA 59.058 33.333 0.00 0.00 0.00 2.29
543 550 6.620877 ACAACTACAATCTCATACCCAAGA 57.379 37.500 0.00 0.00 0.00 3.02
545 552 6.670464 TCCTACAACTACAATCTCATACCCAA 59.330 38.462 0.00 0.00 0.00 4.12
547 554 6.726490 TCCTACAACTACAATCTCATACCC 57.274 41.667 0.00 0.00 0.00 3.69
549 556 7.764443 TGCTTTCCTACAACTACAATCTCATAC 59.236 37.037 0.00 0.00 0.00 2.39
550 557 7.847096 TGCTTTCCTACAACTACAATCTCATA 58.153 34.615 0.00 0.00 0.00 2.15
552 559 6.109156 TGCTTTCCTACAACTACAATCTCA 57.891 37.500 0.00 0.00 0.00 3.27
557 564 7.575414 TTGATTTGCTTTCCTACAACTACAA 57.425 32.000 0.00 0.00 0.00 2.41
560 567 7.361713 CGGATTTGATTTGCTTTCCTACAACTA 60.362 37.037 0.00 0.00 0.00 2.24
561 568 6.570378 CGGATTTGATTTGCTTTCCTACAACT 60.570 38.462 0.00 0.00 0.00 3.16
562 569 5.572896 CGGATTTGATTTGCTTTCCTACAAC 59.427 40.000 0.00 0.00 0.00 3.32
564 571 4.157656 CCGGATTTGATTTGCTTTCCTACA 59.842 41.667 0.00 0.00 0.00 2.74
571 578 1.895131 AGCACCGGATTTGATTTGCTT 59.105 42.857 9.46 0.00 36.97 3.91
573 580 1.994779 CAAGCACCGGATTTGATTTGC 59.005 47.619 9.46 4.53 0.00 3.68
576 583 2.214376 TCCAAGCACCGGATTTGATT 57.786 45.000 9.46 0.00 0.00 2.57
577 584 2.094675 CTTCCAAGCACCGGATTTGAT 58.905 47.619 9.46 0.00 30.99 2.57
578 585 1.073125 TCTTCCAAGCACCGGATTTGA 59.927 47.619 9.46 0.00 30.99 2.69
580 587 1.202879 TGTCTTCCAAGCACCGGATTT 60.203 47.619 9.46 0.00 30.99 2.17
583 590 0.250295 CTTGTCTTCCAAGCACCGGA 60.250 55.000 9.46 0.00 43.84 5.14
584 591 2.247790 CTTGTCTTCCAAGCACCGG 58.752 57.895 0.00 0.00 43.84 5.28
590 597 7.077765 TGATCACATCATCCTTGTCTTCCAAG 61.078 42.308 0.00 0.00 41.30 3.61
591 598 4.639078 TCACATCATCCTTGTCTTCCAA 57.361 40.909 0.00 0.00 0.00 3.53
592 599 4.225717 TGATCACATCATCCTTGTCTTCCA 59.774 41.667 0.00 0.00 33.59 3.53
595 602 5.688814 TCTGATCACATCATCCTTGTCTT 57.311 39.130 0.00 0.00 38.85 3.01
605 612 2.836372 AGAGCCTGTTCTGATCACATCA 59.164 45.455 0.00 0.00 37.76 3.07
623 630 4.192317 GGACAATTAGCTGGGTACAAGAG 58.808 47.826 0.00 0.00 0.00 2.85
654 661 6.194235 AGCATTATTCCACTAACCATTTCCA 58.806 36.000 0.00 0.00 0.00 3.53
659 666 4.036734 CGCAAGCATTATTCCACTAACCAT 59.963 41.667 0.00 0.00 0.00 3.55
678 3180 4.711892 TGCTATTCTGCACCGCAA 57.288 50.000 0.00 0.00 38.41 4.85
698 3200 1.577468 CATAGTGTTATTCCCGCGCA 58.423 50.000 8.75 0.00 0.00 6.09
700 3202 0.865769 GGCATAGTGTTATTCCCGCG 59.134 55.000 0.00 0.00 0.00 6.46
711 3213 1.737793 GTCTTTCGGTTGGGCATAGTG 59.262 52.381 0.00 0.00 0.00 2.74
712 3214 1.349688 TGTCTTTCGGTTGGGCATAGT 59.650 47.619 0.00 0.00 0.00 2.12
753 3261 3.369385 CTGCACAGCTGAAAAGTCAAAG 58.631 45.455 23.35 0.75 31.88 2.77
779 3287 2.813474 GCCGAGTACATGTGCGCA 60.813 61.111 16.93 5.66 0.00 6.09
825 3333 4.556942 CGTACATCTACAACGTATGGGA 57.443 45.455 0.00 0.00 32.16 4.37
852 3363 4.664188 CTCGTCTCTAAGGTAGCTTGTTC 58.336 47.826 17.34 2.99 0.00 3.18
865 3376 0.188587 ATGGGATGGGCTCGTCTCTA 59.811 55.000 7.32 0.00 30.77 2.43
889 3408 2.716424 ACTTTGAAATGGGGAGAGGTGA 59.284 45.455 0.00 0.00 0.00 4.02
942 3467 3.591835 GAGAGAGAGAGCGCGGGG 61.592 72.222 8.83 0.00 0.00 5.73
943 3468 2.515991 AGAGAGAGAGAGCGCGGG 60.516 66.667 8.83 0.00 0.00 6.13
944 3469 1.498865 GAGAGAGAGAGAGAGCGCGG 61.499 65.000 8.83 0.00 0.00 6.46
945 3470 0.530650 AGAGAGAGAGAGAGAGCGCG 60.531 60.000 0.00 0.00 0.00 6.86
946 3471 1.202580 AGAGAGAGAGAGAGAGAGCGC 60.203 57.143 0.00 0.00 0.00 5.92
947 3472 2.363680 AGAGAGAGAGAGAGAGAGAGCG 59.636 54.545 0.00 0.00 0.00 5.03
948 3473 3.640967 AGAGAGAGAGAGAGAGAGAGAGC 59.359 52.174 0.00 0.00 0.00 4.09
949 3474 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
950 3475 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
951 3476 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
952 3477 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
953 3478 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
954 3479 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
955 3480 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
956 3481 5.136068 AGAGAGAGAGAGAGAGAGAGAGA 57.864 47.826 0.00 0.00 0.00 3.10
957 3482 4.023279 CGAGAGAGAGAGAGAGAGAGAGAG 60.023 54.167 0.00 0.00 0.00 3.20
958 3483 3.885901 CGAGAGAGAGAGAGAGAGAGAGA 59.114 52.174 0.00 0.00 0.00 3.10
959 3484 3.634448 ACGAGAGAGAGAGAGAGAGAGAG 59.366 52.174 0.00 0.00 0.00 3.20
1147 3756 4.619227 CAAGGCGGACACGTGGGT 62.619 66.667 21.57 0.00 43.45 4.51
1155 3764 3.426568 GTGCAGAGCAAGGCGGAC 61.427 66.667 0.00 0.00 41.47 4.79
1351 3991 1.904852 GCGTCGTCGGTCAGTCACTA 61.905 60.000 3.90 0.00 37.56 2.74
1352 3992 2.944429 CGTCGTCGGTCAGTCACT 59.056 61.111 0.00 0.00 0.00 3.41
1375 4028 3.122948 CCGAACACCGAGAACTGTAATTG 59.877 47.826 0.00 0.00 41.76 2.32
1377 4042 2.929592 GCCGAACACCGAGAACTGTAAT 60.930 50.000 0.00 0.00 41.76 1.89
1494 4194 2.033049 TGCGTAGAGAAAGACGGATAGC 59.967 50.000 0.00 0.00 39.46 2.97
1497 4197 1.202154 CGTGCGTAGAGAAAGACGGAT 60.202 52.381 0.00 0.00 41.50 4.18
1527 4340 0.741326 AGACGGGTCGATCTCACATG 59.259 55.000 0.00 0.00 34.09 3.21
1579 4422 6.122277 TCAAAGCTTCATATTGGGAGTTAGG 58.878 40.000 0.00 0.00 0.00 2.69
1605 4629 7.521585 CGACTTTATTAAGTGAGTTTTTGCCCT 60.522 37.037 1.04 0.00 44.51 5.19
1608 4632 7.853929 TGACGACTTTATTAAGTGAGTTTTTGC 59.146 33.333 1.04 0.00 44.51 3.68
1609 4633 9.878599 ATGACGACTTTATTAAGTGAGTTTTTG 57.121 29.630 1.04 0.00 44.51 2.44
1631 4657 0.249868 TTGATGGGGCGATCGATGAC 60.250 55.000 21.57 5.94 0.00 3.06
1639 4665 0.251121 AACACATGTTGATGGGGCGA 60.251 50.000 0.00 0.00 37.30 5.54
1677 4707 1.009829 GTGCAAGAAGGCTATGACGG 58.990 55.000 0.00 0.00 34.04 4.79
1684 4714 1.562672 ATACGGGGTGCAAGAAGGCT 61.563 55.000 0.00 0.00 34.04 4.58
1692 4722 0.615850 TTCATGACATACGGGGTGCA 59.384 50.000 0.00 0.00 0.00 4.57
1694 4724 2.979814 TCTTCATGACATACGGGGTG 57.020 50.000 0.00 0.00 0.00 4.61
1695 4725 2.170607 CCTTCTTCATGACATACGGGGT 59.829 50.000 0.00 0.00 0.00 4.95
1696 4726 2.838736 CCTTCTTCATGACATACGGGG 58.161 52.381 0.00 0.00 0.00 5.73
1700 4730 4.142609 TGGAGCCTTCTTCATGACATAC 57.857 45.455 0.00 0.00 0.00 2.39
1707 4737 4.085009 CCTCTTTTTGGAGCCTTCTTCAT 58.915 43.478 0.00 0.00 32.43 2.57
1713 4743 0.178990 ACGCCTCTTTTTGGAGCCTT 60.179 50.000 0.00 0.00 32.43 4.35
1715 4745 1.587043 GGACGCCTCTTTTTGGAGCC 61.587 60.000 0.00 0.00 32.43 4.70
1730 4762 3.550678 GCTCTAAATACGAAGGTTGGACG 59.449 47.826 0.00 0.00 0.00 4.79
1785 4821 5.124936 GCGTAGAAAAAGACATATGGGGTTT 59.875 40.000 7.80 1.99 0.00 3.27
1786 4822 4.638865 GCGTAGAAAAAGACATATGGGGTT 59.361 41.667 7.80 0.00 0.00 4.11
1789 4825 4.260784 GCTGCGTAGAAAAAGACATATGGG 60.261 45.833 4.08 0.00 0.00 4.00
1879 4925 6.210584 GGGAATGACATTGACCCTTCTTTAAA 59.789 38.462 14.91 0.00 37.75 1.52
1970 5117 6.381801 GTTCTTTTTGCTGCTGCTCTAAATA 58.618 36.000 17.00 3.97 40.48 1.40
2014 5191 8.394877 TCGGACAATGTAATTAAGTTTAGCATG 58.605 33.333 0.00 0.00 32.46 4.06
2017 5194 8.193250 TCTCGGACAATGTAATTAAGTTTAGC 57.807 34.615 0.00 0.00 32.46 3.09
2039 5216 4.592485 TTGATAAGAATCTCCGCCTCTC 57.408 45.455 0.00 0.00 32.93 3.20
2042 5219 4.963318 TGATTGATAAGAATCTCCGCCT 57.037 40.909 0.00 0.00 34.04 5.52
2066 5245 7.016361 AGCCTCGACATAATTTATTTGTGTC 57.984 36.000 6.65 6.65 46.97 3.67
2088 5267 1.806542 TGTGATGCCGAGAAGAAAAGC 59.193 47.619 0.00 0.00 0.00 3.51
2089 5268 3.070018 ACTGTGATGCCGAGAAGAAAAG 58.930 45.455 0.00 0.00 0.00 2.27
2090 5269 3.067106 GACTGTGATGCCGAGAAGAAAA 58.933 45.455 0.00 0.00 0.00 2.29
2091 5270 2.688507 GACTGTGATGCCGAGAAGAAA 58.311 47.619 0.00 0.00 0.00 2.52
2092 5271 1.402852 CGACTGTGATGCCGAGAAGAA 60.403 52.381 0.00 0.00 0.00 2.52
2099 5278 0.452184 ACTAGTCGACTGTGATGCCG 59.548 55.000 28.12 8.07 0.00 5.69
2108 5287 1.805345 CGTCTTGGACACTAGTCGACT 59.195 52.381 23.66 23.66 45.92 4.18
2205 5432 1.774894 TTGGAGGCCAGTGGTGGTAC 61.775 60.000 11.74 0.00 46.96 3.34
2209 5438 2.214376 TTAATTGGAGGCCAGTGGTG 57.786 50.000 11.74 0.00 33.81 4.17
2218 5447 5.297776 CAGTAAGTGCAGGATTAATTGGAGG 59.702 44.000 0.00 0.00 0.00 4.30
2243 5474 2.046313 GAATAATTCATTGGCGCTGCG 58.954 47.619 19.17 19.17 0.00 5.18
2456 8176 5.491070 TGCTAAACCTGTACTCGTACTAGA 58.509 41.667 0.69 0.00 37.00 2.43
2457 8177 5.808042 TGCTAAACCTGTACTCGTACTAG 57.192 43.478 8.51 0.00 37.00 2.57
2459 8179 5.656213 AATGCTAAACCTGTACTCGTACT 57.344 39.130 8.51 0.00 37.00 2.73
2462 8182 7.733402 TTAAAAATGCTAAACCTGTACTCGT 57.267 32.000 0.00 0.00 0.00 4.18
2463 8183 8.447833 TCATTAAAAATGCTAAACCTGTACTCG 58.552 33.333 0.00 0.00 0.00 4.18
2500 8225 1.981256 ACCAACCAGTTGCTTGTAGG 58.019 50.000 4.96 0.00 39.16 3.18
2501 8226 6.823689 AGATATAACCAACCAGTTGCTTGTAG 59.176 38.462 4.96 0.00 39.16 2.74
2502 8227 6.717289 AGATATAACCAACCAGTTGCTTGTA 58.283 36.000 4.96 1.92 39.16 2.41
2503 8228 5.570320 AGATATAACCAACCAGTTGCTTGT 58.430 37.500 4.96 0.00 39.16 3.16
2504 8229 6.150976 TCAAGATATAACCAACCAGTTGCTTG 59.849 38.462 13.83 13.83 39.16 4.01
2542 8274 5.316327 TCACATCATGACGATATAGGCTC 57.684 43.478 0.00 0.00 31.20 4.70
2601 8339 4.141482 ACCTAAACTTTGTGCTCTCTTCCA 60.141 41.667 0.00 0.00 0.00 3.53
2618 8356 4.697828 TGAACATTATTGCTCGCACCTAAA 59.302 37.500 0.00 0.00 0.00 1.85
2643 8381 3.893326 ATGCCTGGCCAAGAATTAAAC 57.107 42.857 17.53 0.00 0.00 2.01
2697 8435 3.191371 GCCCTTCAACTTGGTATCACTTG 59.809 47.826 0.00 0.00 0.00 3.16
2726 8465 1.276622 TTTGGGACAGAGGGAGTAGC 58.723 55.000 0.00 0.00 42.39 3.58
2727 8466 3.264450 ACATTTTGGGACAGAGGGAGTAG 59.736 47.826 0.00 0.00 42.39 2.57
2728 8467 3.256704 ACATTTTGGGACAGAGGGAGTA 58.743 45.455 0.00 0.00 42.39 2.59
2729 8468 2.065799 ACATTTTGGGACAGAGGGAGT 58.934 47.619 0.00 0.00 42.39 3.85
2730 8469 2.887151 ACATTTTGGGACAGAGGGAG 57.113 50.000 0.00 0.00 42.39 4.30
2731 8470 3.913799 TCTTACATTTTGGGACAGAGGGA 59.086 43.478 0.00 0.00 42.39 4.20
2732 8471 4.010349 GTCTTACATTTTGGGACAGAGGG 58.990 47.826 0.00 0.00 42.39 4.30
2733 8472 3.684788 CGTCTTACATTTTGGGACAGAGG 59.315 47.826 0.00 0.00 42.39 3.69
2734 8473 4.315803 ACGTCTTACATTTTGGGACAGAG 58.684 43.478 0.00 0.00 42.39 3.35
2735 8474 4.345859 ACGTCTTACATTTTGGGACAGA 57.654 40.909 0.00 0.00 42.39 3.41
2736 8475 5.432885 AAACGTCTTACATTTTGGGACAG 57.567 39.130 0.00 0.00 42.39 3.51
2737 8476 5.838531 AAAACGTCTTACATTTTGGGACA 57.161 34.783 0.00 0.00 0.00 4.02
2757 8496 6.675413 TGAGACCTAGTGTAAGCCTAAAAA 57.325 37.500 0.00 0.00 0.00 1.94
2758 8497 6.675413 TTGAGACCTAGTGTAAGCCTAAAA 57.325 37.500 0.00 0.00 0.00 1.52
2759 8498 6.675413 TTTGAGACCTAGTGTAAGCCTAAA 57.325 37.500 0.00 0.00 0.00 1.85
2760 8499 6.675413 TTTTGAGACCTAGTGTAAGCCTAA 57.325 37.500 0.00 0.00 0.00 2.69
2761 8500 6.461640 GTTTTTGAGACCTAGTGTAAGCCTA 58.538 40.000 0.00 0.00 0.00 3.93
2762 8501 5.306394 GTTTTTGAGACCTAGTGTAAGCCT 58.694 41.667 0.00 0.00 0.00 4.58
2763 8502 4.151867 CGTTTTTGAGACCTAGTGTAAGCC 59.848 45.833 0.00 0.00 0.00 4.35
2764 8503 4.748600 ACGTTTTTGAGACCTAGTGTAAGC 59.251 41.667 0.00 0.00 0.00 3.09
2765 8504 6.214399 AGACGTTTTTGAGACCTAGTGTAAG 58.786 40.000 0.00 0.00 0.00 2.34
2766 8505 6.152932 AGACGTTTTTGAGACCTAGTGTAA 57.847 37.500 0.00 0.00 0.00 2.41
2767 8506 5.779529 AGACGTTTTTGAGACCTAGTGTA 57.220 39.130 0.00 0.00 0.00 2.90
2768 8507 4.667519 AGACGTTTTTGAGACCTAGTGT 57.332 40.909 0.00 0.00 0.00 3.55
2769 8508 5.981315 TGTAAGACGTTTTTGAGACCTAGTG 59.019 40.000 0.00 0.00 0.00 2.74
2770 8509 6.152932 TGTAAGACGTTTTTGAGACCTAGT 57.847 37.500 0.00 0.00 0.00 2.57
2771 8510 7.653767 AATGTAAGACGTTTTTGAGACCTAG 57.346 36.000 0.00 0.00 0.00 3.02
2772 8511 8.339714 CAAAATGTAAGACGTTTTTGAGACCTA 58.660 33.333 13.15 0.00 42.72 3.08
2773 8512 6.937436 AAATGTAAGACGTTTTTGAGACCT 57.063 33.333 0.00 0.00 33.87 3.85
2774 8513 6.416750 CCAAAATGTAAGACGTTTTTGAGACC 59.583 38.462 17.97 0.00 42.72 3.85
2775 8514 6.416750 CCCAAAATGTAAGACGTTTTTGAGAC 59.583 38.462 17.97 3.18 42.72 3.36
2776 8515 6.319152 TCCCAAAATGTAAGACGTTTTTGAGA 59.681 34.615 17.97 10.43 42.72 3.27
2777 8516 6.416750 GTCCCAAAATGTAAGACGTTTTTGAG 59.583 38.462 17.97 8.62 42.72 3.02
2778 8517 6.267070 GTCCCAAAATGTAAGACGTTTTTGA 58.733 36.000 17.97 9.08 42.72 2.69
2779 8518 5.172411 CGTCCCAAAATGTAAGACGTTTTTG 59.828 40.000 11.96 11.96 42.72 2.44
2780 8519 5.275494 CGTCCCAAAATGTAAGACGTTTTT 58.725 37.500 6.77 0.00 42.72 1.94
2781 8520 4.261280 CCGTCCCAAAATGTAAGACGTTTT 60.261 41.667 9.63 4.14 45.25 2.43
2792 8531 2.128771 ACTCCATCCGTCCCAAAATG 57.871 50.000 0.00 0.00 0.00 2.32
2796 8535 2.241281 TTCTACTCCATCCGTCCCAA 57.759 50.000 0.00 0.00 0.00 4.12
2797 8536 2.108168 CTTTCTACTCCATCCGTCCCA 58.892 52.381 0.00 0.00 0.00 4.37
2800 8539 3.025262 AGTCCTTTCTACTCCATCCGTC 58.975 50.000 0.00 0.00 0.00 4.79
2801 8540 3.103080 AGTCCTTTCTACTCCATCCGT 57.897 47.619 0.00 0.00 0.00 4.69
2802 8541 4.473477 AAAGTCCTTTCTACTCCATCCG 57.527 45.455 0.00 0.00 0.00 4.18
2803 8542 5.561679 ACAAAAGTCCTTTCTACTCCATCC 58.438 41.667 0.00 0.00 31.45 3.51
2806 8545 6.126883 TGAGAACAAAAGTCCTTTCTACTCCA 60.127 38.462 0.00 0.00 31.45 3.86
2855 8594 7.857734 TGGCAAATCTGATCGTCTAAAAATA 57.142 32.000 0.00 0.00 0.00 1.40
2880 8619 3.568007 TGGCAACTTTATCTGTTTTCGCT 59.432 39.130 0.00 0.00 37.61 4.93
2896 8635 1.068333 CCTACACACAAGCATGGCAAC 60.068 52.381 0.00 0.00 0.00 4.17
2900 8639 2.479566 AGTCCTACACACAAGCATGG 57.520 50.000 0.00 0.00 0.00 3.66
2915 8654 7.739498 TTTTACTGTAAGAACATGGAAGTCC 57.261 36.000 0.00 0.00 37.43 3.85
2944 8683 3.060473 GGTCGATCTTTTACGCTACATGC 60.060 47.826 0.00 0.00 38.57 4.06
2969 8708 7.682593 TTAATCGTTGCAGCATGATAATTTG 57.317 32.000 10.25 0.00 39.69 2.32
2986 8725 6.759356 TGATCGAACACATGGTAATTAATCGT 59.241 34.615 0.00 0.00 0.00 3.73
2996 8735 4.753516 TTATCCTGATCGAACACATGGT 57.246 40.909 0.00 0.00 0.00 3.55
3011 8750 6.948309 GGCTATGATTGGGTATGTTTTATCCT 59.052 38.462 0.00 0.00 0.00 3.24
3017 8756 6.440328 ACAAAAGGCTATGATTGGGTATGTTT 59.560 34.615 7.17 0.00 0.00 2.83
3021 8760 5.765510 TGACAAAAGGCTATGATTGGGTAT 58.234 37.500 7.17 0.00 0.00 2.73
3040 8779 8.677300 GCAAAGGACTTGAATATAAATCTGACA 58.323 33.333 0.00 0.00 37.17 3.58
3055 8794 2.335712 GGCCGGAGCAAAGGACTTG 61.336 63.158 5.05 0.00 42.56 3.16
3066 8805 2.262915 GATAGCATCGGGCCGGAG 59.737 66.667 27.98 19.59 46.50 4.63
3069 8808 3.314331 AGGGATAGCATCGGGCCG 61.314 66.667 22.51 22.51 46.50 6.13
3070 8809 2.348998 CAGGGATAGCATCGGGCC 59.651 66.667 0.00 0.00 46.50 5.80
3071 8810 1.004440 GACAGGGATAGCATCGGGC 60.004 63.158 0.00 0.00 45.30 6.13
3072 8811 1.674057 GGACAGGGATAGCATCGGG 59.326 63.158 0.00 0.00 0.00 5.14
3073 8812 0.833834 AGGGACAGGGATAGCATCGG 60.834 60.000 0.00 0.00 0.00 4.18
3114 8853 5.168569 TCTTGCACGATTAGACTTACCAAG 58.831 41.667 0.00 0.00 0.00 3.61
3115 8854 5.142061 TCTTGCACGATTAGACTTACCAA 57.858 39.130 0.00 0.00 0.00 3.67
3116 8855 4.794278 TCTTGCACGATTAGACTTACCA 57.206 40.909 0.00 0.00 0.00 3.25
3117 8856 6.663944 AAATCTTGCACGATTAGACTTACC 57.336 37.500 17.76 0.00 33.47 2.85
3121 8860 9.764363 TGAATATAAATCTTGCACGATTAGACT 57.236 29.630 17.76 6.05 33.47 3.24
3126 8865 8.345565 GGACTTGAATATAAATCTTGCACGATT 58.654 33.333 12.35 12.35 35.23 3.34
3127 8866 7.716998 AGGACTTGAATATAAATCTTGCACGAT 59.283 33.333 0.00 0.00 0.00 3.73
3128 8867 7.047891 AGGACTTGAATATAAATCTTGCACGA 58.952 34.615 0.00 0.00 0.00 4.35
3129 8868 7.251704 AGGACTTGAATATAAATCTTGCACG 57.748 36.000 0.00 0.00 0.00 5.34
3130 8869 9.294030 CAAAGGACTTGAATATAAATCTTGCAC 57.706 33.333 0.00 0.00 37.17 4.57
3131 8870 9.023962 ACAAAGGACTTGAATATAAATCTTGCA 57.976 29.630 0.00 0.00 38.50 4.08
3132 8871 9.860898 AACAAAGGACTTGAATATAAATCTTGC 57.139 29.630 0.00 0.00 38.50 4.01
3135 8874 8.893727 CGGAACAAAGGACTTGAATATAAATCT 58.106 33.333 0.00 0.00 38.50 2.40
3136 8875 8.129211 CCGGAACAAAGGACTTGAATATAAATC 58.871 37.037 0.00 0.00 38.50 2.17
3137 8876 7.416326 GCCGGAACAAAGGACTTGAATATAAAT 60.416 37.037 5.05 0.00 38.50 1.40
3138 8877 6.127842 GCCGGAACAAAGGACTTGAATATAAA 60.128 38.462 5.05 0.00 38.50 1.40
3139 8878 5.355910 GCCGGAACAAAGGACTTGAATATAA 59.644 40.000 5.05 0.00 38.50 0.98
3140 8879 4.879545 GCCGGAACAAAGGACTTGAATATA 59.120 41.667 5.05 0.00 38.50 0.86
3141 8880 3.694566 GCCGGAACAAAGGACTTGAATAT 59.305 43.478 5.05 0.00 38.50 1.28
3142 8881 3.078837 GCCGGAACAAAGGACTTGAATA 58.921 45.455 5.05 0.00 38.50 1.75
3143 8882 1.886542 GCCGGAACAAAGGACTTGAAT 59.113 47.619 5.05 0.00 38.50 2.57
3144 8883 1.314730 GCCGGAACAAAGGACTTGAA 58.685 50.000 5.05 0.00 38.50 2.69
3145 8884 0.536460 GGCCGGAACAAAGGACTTGA 60.536 55.000 5.05 0.00 38.50 3.02
3146 8885 1.524008 GGGCCGGAACAAAGGACTTG 61.524 60.000 5.05 0.00 41.19 3.16
3147 8886 1.228459 GGGCCGGAACAAAGGACTT 60.228 57.895 5.05 0.00 35.38 3.01
3148 8887 2.434774 GGGCCGGAACAAAGGACT 59.565 61.111 5.05 0.00 35.38 3.85
3149 8888 2.814913 ATCGGGCCGGAACAAAGGAC 62.815 60.000 27.98 0.00 33.88 3.85
3150 8889 2.598787 ATCGGGCCGGAACAAAGGA 61.599 57.895 27.98 2.79 0.00 3.36
3151 8890 2.045340 ATCGGGCCGGAACAAAGG 60.045 61.111 27.98 0.00 0.00 3.11
3152 8891 3.051392 GCATCGGGCCGGAACAAAG 62.051 63.158 27.98 4.03 36.11 2.77
3153 8892 2.186602 TAGCATCGGGCCGGAACAAA 62.187 55.000 27.98 5.47 46.50 2.83
3154 8893 1.978455 ATAGCATCGGGCCGGAACAA 61.978 55.000 27.98 6.37 46.50 2.83
3155 8894 2.377628 GATAGCATCGGGCCGGAACA 62.378 60.000 27.98 6.84 46.50 3.18
3156 8895 1.668151 GATAGCATCGGGCCGGAAC 60.668 63.158 27.98 15.31 46.50 3.62
3157 8896 2.741092 GATAGCATCGGGCCGGAA 59.259 61.111 27.98 8.20 46.50 4.30
3158 8897 3.311110 GGATAGCATCGGGCCGGA 61.311 66.667 27.98 16.21 46.50 5.14
3159 8898 4.394712 GGGATAGCATCGGGCCGG 62.395 72.222 27.98 12.42 46.50 6.13
3160 8899 3.314331 AGGGATAGCATCGGGCCG 61.314 66.667 22.51 22.51 46.50 6.13
3161 8900 2.348998 CAGGGATAGCATCGGGCC 59.651 66.667 0.00 0.00 46.50 5.80
3162 8901 1.004440 GACAGGGATAGCATCGGGC 60.004 63.158 0.00 0.00 45.30 6.13
3163 8902 1.674057 GGACAGGGATAGCATCGGG 59.326 63.158 0.00 0.00 0.00 5.14
3164 8903 0.833834 AGGGACAGGGATAGCATCGG 60.834 60.000 0.00 0.00 0.00 4.18
3165 8904 1.924731 TAGGGACAGGGATAGCATCG 58.075 55.000 0.00 0.00 0.00 3.84
3166 8905 3.511477 TCTTAGGGACAGGGATAGCATC 58.489 50.000 0.00 0.00 0.00 3.91
3167 8906 3.637821 TCTTAGGGACAGGGATAGCAT 57.362 47.619 0.00 0.00 0.00 3.79
3168 8907 3.511477 GATCTTAGGGACAGGGATAGCA 58.489 50.000 0.00 0.00 0.00 3.49
3169 8908 2.835156 GGATCTTAGGGACAGGGATAGC 59.165 54.545 0.00 0.00 0.00 2.97
3170 8909 4.412060 AGGATCTTAGGGACAGGGATAG 57.588 50.000 0.00 0.00 0.00 2.08
3171 8910 4.045590 GGTAGGATCTTAGGGACAGGGATA 59.954 50.000 0.00 0.00 0.00 2.59
3172 8911 3.181405 GGTAGGATCTTAGGGACAGGGAT 60.181 52.174 0.00 0.00 0.00 3.85
3173 8912 2.179424 GGTAGGATCTTAGGGACAGGGA 59.821 54.545 0.00 0.00 0.00 4.20
3174 8913 2.610873 GGTAGGATCTTAGGGACAGGG 58.389 57.143 0.00 0.00 0.00 4.45
3175 8914 2.610873 GGGTAGGATCTTAGGGACAGG 58.389 57.143 0.00 0.00 0.00 4.00
3176 8915 2.240279 CGGGTAGGATCTTAGGGACAG 58.760 57.143 0.00 0.00 0.00 3.51
3177 8916 1.756690 GCGGGTAGGATCTTAGGGACA 60.757 57.143 0.00 0.00 0.00 4.02
3178 8917 0.967662 GCGGGTAGGATCTTAGGGAC 59.032 60.000 0.00 0.00 0.00 4.46
3179 8918 0.178941 GGCGGGTAGGATCTTAGGGA 60.179 60.000 0.00 0.00 0.00 4.20
3180 8919 0.471211 TGGCGGGTAGGATCTTAGGG 60.471 60.000 0.00 0.00 0.00 3.53
3181 8920 0.680061 GTGGCGGGTAGGATCTTAGG 59.320 60.000 0.00 0.00 0.00 2.69
3182 8921 0.680061 GGTGGCGGGTAGGATCTTAG 59.320 60.000 0.00 0.00 0.00 2.18
3183 8922 0.761702 GGGTGGCGGGTAGGATCTTA 60.762 60.000 0.00 0.00 0.00 2.10
3184 8923 2.070650 GGGTGGCGGGTAGGATCTT 61.071 63.158 0.00 0.00 0.00 2.40
3185 8924 2.446036 GGGTGGCGGGTAGGATCT 60.446 66.667 0.00 0.00 0.00 2.75
3186 8925 2.372074 TTGGGTGGCGGGTAGGATC 61.372 63.158 0.00 0.00 0.00 3.36
3187 8926 2.285818 TTGGGTGGCGGGTAGGAT 60.286 61.111 0.00 0.00 0.00 3.24
3188 8927 3.324108 GTTGGGTGGCGGGTAGGA 61.324 66.667 0.00 0.00 0.00 2.94
3189 8928 2.902457 AAGTTGGGTGGCGGGTAGG 61.902 63.158 0.00 0.00 0.00 3.18
3190 8929 1.674322 CAAGTTGGGTGGCGGGTAG 60.674 63.158 0.00 0.00 0.00 3.18
3191 8930 2.432563 CAAGTTGGGTGGCGGGTA 59.567 61.111 0.00 0.00 0.00 3.69
3192 8931 4.596585 CCAAGTTGGGTGGCGGGT 62.597 66.667 14.64 0.00 32.67 5.28
3193 8932 2.700407 TTACCAAGTTGGGTGGCGGG 62.700 60.000 25.59 0.00 43.37 6.13
3194 8933 1.228306 TTACCAAGTTGGGTGGCGG 60.228 57.895 25.59 0.00 43.37 6.13
3195 8934 0.536460 ACTTACCAAGTTGGGTGGCG 60.536 55.000 25.59 11.25 43.37 5.69
3196 8935 1.202891 AGACTTACCAAGTTGGGTGGC 60.203 52.381 25.59 16.25 43.37 5.01
3197 8936 2.951229 AGACTTACCAAGTTGGGTGG 57.049 50.000 25.59 15.85 43.37 4.61
3198 8937 4.630069 CGATTAGACTTACCAAGTTGGGTG 59.370 45.833 25.59 16.25 43.37 4.61
3199 8938 4.285260 ACGATTAGACTTACCAAGTTGGGT 59.715 41.667 25.59 13.93 43.37 4.51
3200 8939 4.630069 CACGATTAGACTTACCAAGTTGGG 59.370 45.833 25.59 10.71 43.37 4.12
3477 9311 6.308015 AGTTGTAGATGGCATGGTAGTTTA 57.692 37.500 3.81 0.00 0.00 2.01
3484 9318 5.641209 GCTTATCTAGTTGTAGATGGCATGG 59.359 44.000 3.81 0.00 44.42 3.66
3523 9358 9.470399 TTGTACTAGATATGGTTGTTGTCTAGA 57.530 33.333 13.01 0.00 40.33 2.43
3542 9377 3.794717 TGCGGCCGATTATTTTGTACTA 58.205 40.909 33.48 0.00 0.00 1.82
3543 9378 2.634600 TGCGGCCGATTATTTTGTACT 58.365 42.857 33.48 0.00 0.00 2.73
3544 9379 3.359654 CTTGCGGCCGATTATTTTGTAC 58.640 45.455 33.48 6.69 0.00 2.90
3559 9437 3.694072 TCATAAGAAATTCCACCTTGCGG 59.306 43.478 0.00 0.00 0.00 5.69
3588 9466 2.487086 CCACACCACCTCTTCATCACAA 60.487 50.000 0.00 0.00 0.00 3.33
3589 9467 1.072173 CCACACCACCTCTTCATCACA 59.928 52.381 0.00 0.00 0.00 3.58
3601 9479 1.668151 GCTTCCTCGACCACACCAC 60.668 63.158 0.00 0.00 0.00 4.16
3638 9516 3.305064 GGCTCCATCTTCTTACTAGCTCG 60.305 52.174 0.00 0.00 0.00 5.03
3641 9519 2.362717 ACGGCTCCATCTTCTTACTAGC 59.637 50.000 0.00 0.00 0.00 3.42
3642 9520 3.304123 CGACGGCTCCATCTTCTTACTAG 60.304 52.174 0.00 0.00 0.00 2.57
3705 9646 0.170339 TGACGATCGGCAGTGTACAG 59.830 55.000 22.34 0.00 0.00 2.74
3726 9667 6.127310 ACACAATAGTAGACTCTGGATGTTCC 60.127 42.308 0.00 0.00 36.96 3.62
3727 9668 6.868622 ACACAATAGTAGACTCTGGATGTTC 58.131 40.000 0.00 0.00 0.00 3.18
3745 9686 4.336889 TCAAGGAAGACGAGAACACAAT 57.663 40.909 0.00 0.00 0.00 2.71
3773 9714 0.799917 CATCACTCTCACGGTGCTCG 60.800 60.000 2.51 0.00 45.88 5.03
3780 9721 2.754472 TGAACCAACATCACTCTCACG 58.246 47.619 0.00 0.00 0.00 4.35
3788 9729 7.111466 TCATTCACATCTATGAACCAACATCA 58.889 34.615 0.00 0.00 41.29 3.07
3802 9743 2.100584 GAGACTCGCCTCATTCACATCT 59.899 50.000 0.00 0.00 33.50 2.90
3840 9781 6.119536 TGGCAAAAGTGTCTTTAAAGAGAGA 58.880 36.000 18.22 3.02 35.32 3.10
3841 9782 6.377327 TGGCAAAAGTGTCTTTAAAGAGAG 57.623 37.500 18.22 6.22 35.32 3.20
3842 9783 6.959639 ATGGCAAAAGTGTCTTTAAAGAGA 57.040 33.333 18.22 14.45 35.32 3.10
3844 9785 8.001881 TGTTATGGCAAAAGTGTCTTTAAAGA 57.998 30.769 13.99 13.99 0.00 2.52
3846 9787 8.254508 AGTTGTTATGGCAAAAGTGTCTTTAAA 58.745 29.630 0.00 0.00 0.00 1.52
3848 9789 7.284489 AGAGTTGTTATGGCAAAAGTGTCTTTA 59.716 33.333 0.00 0.00 0.00 1.85
3849 9790 6.096846 AGAGTTGTTATGGCAAAAGTGTCTTT 59.903 34.615 0.00 0.00 0.00 2.52
3850 9791 5.594317 AGAGTTGTTATGGCAAAAGTGTCTT 59.406 36.000 0.00 0.00 0.00 3.01
3863 9805 4.388773 TCGTGCTGCTAAAGAGTTGTTATG 59.611 41.667 0.00 0.00 0.00 1.90
3864 9806 4.566004 TCGTGCTGCTAAAGAGTTGTTAT 58.434 39.130 0.00 0.00 0.00 1.89
3891 9833 5.413833 GGGAGTTACTAAAACTTAGGCAACC 59.586 44.000 0.00 0.00 37.17 3.77
3923 9865 3.462982 ACATAGCACACACACGAAGAAA 58.537 40.909 0.00 0.00 0.00 2.52
3931 9873 9.995003 TCATATGATTATTACATAGCACACACA 57.005 29.630 0.00 0.00 34.43 3.72
3942 9884 7.612633 ACATGCATGCCTCATATGATTATTACA 59.387 33.333 26.53 2.26 0.00 2.41
4007 9950 4.759516 ATGGTTCGTCGTTTTGCTTTAT 57.240 36.364 0.00 0.00 0.00 1.40
4021 9964 4.003648 AGCAACTCCTTTCTTATGGTTCG 58.996 43.478 0.00 0.00 0.00 3.95
4024 9967 3.956744 GGAGCAACTCCTTTCTTATGGT 58.043 45.455 6.38 0.00 46.41 3.55
4038 9981 3.854856 TTGCCAACTGGGAGCAAC 58.145 55.556 0.00 0.00 41.35 4.17
4044 9987 0.676466 TGCGACTATTGCCAACTGGG 60.676 55.000 0.00 0.00 40.85 4.45
4045 9988 0.447801 GTGCGACTATTGCCAACTGG 59.552 55.000 0.00 0.00 38.53 4.00
4051 9994 1.276844 GCGATGTGCGACTATTGCC 59.723 57.895 0.00 0.00 44.57 4.52
4100 10043 4.566545 ATCAAAGATGTGTGTGCGAAAA 57.433 36.364 0.00 0.00 0.00 2.29
4103 10046 3.563390 TGAAATCAAAGATGTGTGTGCGA 59.437 39.130 0.00 0.00 0.00 5.10
4108 10051 5.693104 CAGGGTTTGAAATCAAAGATGTGTG 59.307 40.000 8.76 0.00 45.36 3.82
4109 10052 5.739935 GCAGGGTTTGAAATCAAAGATGTGT 60.740 40.000 8.76 0.00 45.36 3.72
4114 10057 4.834496 AGATGCAGGGTTTGAAATCAAAGA 59.166 37.500 8.76 0.00 45.36 2.52
4121 10064 4.469657 ACTGTTAGATGCAGGGTTTGAAA 58.530 39.130 0.00 0.00 38.22 2.69
4130 10073 9.247126 GCAGATGATATATACTGTTAGATGCAG 57.753 37.037 12.45 0.00 39.67 4.41
4141 10084 8.606754 ATCCTTGACTGCAGATGATATATACT 57.393 34.615 23.35 0.00 0.00 2.12
4148 10091 3.201487 TCCAATCCTTGACTGCAGATGAT 59.799 43.478 23.35 11.03 0.00 2.45
4150 10093 2.995283 TCCAATCCTTGACTGCAGATG 58.005 47.619 23.35 6.87 0.00 2.90
4151 10094 3.726557 TTCCAATCCTTGACTGCAGAT 57.273 42.857 23.35 4.35 0.00 2.90
4152 10095 3.009363 TCATTCCAATCCTTGACTGCAGA 59.991 43.478 23.35 0.00 0.00 4.26
4173 10119 6.969828 ACCAATAGTGAAAGATCTTCGTTC 57.030 37.500 8.78 3.50 35.81 3.95
4189 10139 4.693283 TCTGCGAAATACTCCACCAATAG 58.307 43.478 0.00 0.00 0.00 1.73
4191 10141 3.627395 TCTGCGAAATACTCCACCAAT 57.373 42.857 0.00 0.00 0.00 3.16
4237 10187 5.417580 TGATAGCCAATGAAAGGTTTGTACC 59.582 40.000 0.00 0.00 45.39 3.34
4271 10221 1.060122 CGTCGGTGATAGTTTTTCGGC 59.940 52.381 0.00 0.00 0.00 5.54
4272 10222 1.657094 CCGTCGGTGATAGTTTTTCGG 59.343 52.381 2.08 0.00 0.00 4.30
4273 10223 2.343544 GTCCGTCGGTGATAGTTTTTCG 59.656 50.000 11.88 0.00 0.00 3.46
4274 10224 3.582780 AGTCCGTCGGTGATAGTTTTTC 58.417 45.455 11.88 0.00 0.00 2.29
4280 10230 0.591741 GCGAAGTCCGTCGGTGATAG 60.592 60.000 11.88 2.98 41.40 2.08
4281 10231 1.307355 TGCGAAGTCCGTCGGTGATA 61.307 55.000 11.88 0.00 41.40 2.15
4282 10232 2.181021 GCGAAGTCCGTCGGTGAT 59.819 61.111 11.88 0.00 41.40 3.06
4283 10233 3.289062 TGCGAAGTCCGTCGGTGA 61.289 61.111 11.88 0.00 41.40 4.02
4284 10234 3.103911 GTGCGAAGTCCGTCGGTG 61.104 66.667 11.88 0.00 41.40 4.94
4286 10236 2.049433 AAGTGCGAAGTCCGTCGG 60.049 61.111 4.39 4.39 41.40 4.79
4287 10237 1.337817 CTGAAGTGCGAAGTCCGTCG 61.338 60.000 0.00 0.00 43.98 5.12
4288 10238 0.039437 TCTGAAGTGCGAAGTCCGTC 60.039 55.000 0.00 0.00 41.15 4.79
4289 10239 0.387929 TTCTGAAGTGCGAAGTCCGT 59.612 50.000 0.00 0.00 41.15 4.69
4291 10241 1.192534 CGTTTCTGAAGTGCGAAGTCC 59.807 52.381 0.00 0.00 0.00 3.85
4297 10247 0.158928 GACGTCGTTTCTGAAGTGCG 59.841 55.000 0.00 0.00 30.59 5.34
4299 10249 4.473199 TCTATGACGTCGTTTCTGAAGTG 58.527 43.478 16.79 0.00 30.59 3.16
4300 10250 4.724303 CTCTATGACGTCGTTTCTGAAGT 58.276 43.478 16.79 0.00 33.18 3.01
4312 10262 3.940723 GCTAACCGCTCTATGACGT 57.059 52.632 0.00 0.00 35.14 4.34
4324 10274 3.438297 TCAATGTCTCGCTAGCTAACC 57.562 47.619 13.93 0.00 0.00 2.85
4327 10277 2.625314 AGCATCAATGTCTCGCTAGCTA 59.375 45.455 13.93 0.00 0.00 3.32
4328 10278 1.411977 AGCATCAATGTCTCGCTAGCT 59.588 47.619 13.93 0.00 0.00 3.32
4329 10279 1.863267 AGCATCAATGTCTCGCTAGC 58.137 50.000 4.06 4.06 0.00 3.42
4330 10280 4.871993 AAAAGCATCAATGTCTCGCTAG 57.128 40.909 0.00 0.00 31.36 3.42
4350 10300 6.403418 CCAACTACAGTTTTTGTTGTCGGTAA 60.403 38.462 0.00 0.00 43.44 2.85
4354 10304 5.025826 GTCCAACTACAGTTTTTGTTGTCG 58.974 41.667 0.00 0.00 43.44 4.35
4356 10306 5.968528 TGTCCAACTACAGTTTTTGTTGT 57.031 34.783 0.00 0.00 45.61 3.32
4357 10307 5.748152 CCATGTCCAACTACAGTTTTTGTTG 59.252 40.000 0.00 0.00 41.29 3.33
4358 10308 5.681179 GCCATGTCCAACTACAGTTTTTGTT 60.681 40.000 0.00 0.00 41.29 2.83
4359 10309 4.202111 GCCATGTCCAACTACAGTTTTTGT 60.202 41.667 0.00 0.00 43.96 2.83
4360 10310 4.202101 TGCCATGTCCAACTACAGTTTTTG 60.202 41.667 0.00 0.00 35.83 2.44
4368 10318 5.391312 AAAAGATTGCCATGTCCAACTAC 57.609 39.130 0.00 0.00 0.00 2.73
4442 10393 4.331992 GCGGGTATTTAGAGGAAAACACTC 59.668 45.833 0.00 0.00 35.20 3.51
4446 10397 3.524541 TCGCGGGTATTTAGAGGAAAAC 58.475 45.455 6.13 0.00 0.00 2.43
4455 10407 4.876679 TGACAAATGATTCGCGGGTATTTA 59.123 37.500 6.13 0.00 0.00 1.40
4464 10416 2.247311 AAGCGTGACAAATGATTCGC 57.753 45.000 0.64 0.64 43.16 4.70
4479 10431 5.708948 TGAATCAAATGGGAAAGTAAAGCG 58.291 37.500 0.00 0.00 0.00 4.68
4520 10472 4.810491 CGAAAGGGGCAAATTATCAAATGG 59.190 41.667 0.00 0.00 0.00 3.16
4543 10495 2.289565 GATCCGAACCCCAGTCATTTC 58.710 52.381 0.00 0.00 0.00 2.17
4576 10528 1.543944 GGTTTGGCCCAGGATTGTGG 61.544 60.000 0.00 0.00 37.34 4.17
4592 10544 1.474330 GCGGAGGGATTTTGATGGTT 58.526 50.000 0.00 0.00 0.00 3.67
4593 10545 0.748005 CGCGGAGGGATTTTGATGGT 60.748 55.000 0.00 0.00 46.37 3.55
4594 10546 2.024918 CGCGGAGGGATTTTGATGG 58.975 57.895 0.00 0.00 46.37 3.51
4606 10558 4.856607 GAGCCTTCGGTCGCGGAG 62.857 72.222 6.13 0.00 0.00 4.63
4610 10562 4.430765 TTCGGAGCCTTCGGTCGC 62.431 66.667 0.00 0.00 37.38 5.19
4611 10563 1.651240 TACTTCGGAGCCTTCGGTCG 61.651 60.000 0.00 0.00 37.38 4.79
4612 10564 0.745468 ATACTTCGGAGCCTTCGGTC 59.255 55.000 0.00 0.00 35.68 4.79
4613 10565 0.745468 GATACTTCGGAGCCTTCGGT 59.255 55.000 0.00 0.00 0.00 4.69
4614 10566 0.032267 GGATACTTCGGAGCCTTCGG 59.968 60.000 0.00 0.00 0.00 4.30
4615 10567 0.032267 GGGATACTTCGGAGCCTTCG 59.968 60.000 0.00 0.00 0.00 3.79
4616 10568 1.069358 CTGGGATACTTCGGAGCCTTC 59.931 57.143 0.00 0.00 0.00 3.46
4787 10758 4.410400 CTGGGAGGAACACCGGCC 62.410 72.222 0.00 0.00 41.07 6.13
4788 10759 4.410400 CCTGGGAGGAACACCGGC 62.410 72.222 0.00 0.00 41.07 6.13
4946 10944 3.553828 AACCACCGGTCTACCATAATG 57.446 47.619 2.59 0.00 33.12 1.90
5010 11013 1.225908 GCAATAAACCACCGCGACG 60.226 57.895 8.23 0.00 0.00 5.12
5029 11032 3.316029 TGACACAGCAACAAGAGGATTTG 59.684 43.478 0.00 0.00 0.00 2.32
5034 11037 2.223572 GGTTTGACACAGCAACAAGAGG 60.224 50.000 0.00 0.00 0.00 3.69
5055 11058 4.499399 CGAACATACGACCAACATACTGAG 59.501 45.833 0.00 0.00 35.09 3.35
5100 11104 6.139671 AGGGCTCAAGAGAAGATCATTAGTA 58.860 40.000 0.32 0.00 0.00 1.82
5195 11200 3.371285 GTCGTACTTTTGCCAAGGAGATC 59.629 47.826 0.00 0.00 0.00 2.75
5265 11278 0.375803 AAACGCCGACAAGTGTCAAC 59.624 50.000 11.77 2.04 44.99 3.18
5302 11322 0.108329 ATCGCCCCGTGTACAGAAAG 60.108 55.000 0.00 0.00 0.00 2.62
5311 11331 2.257286 CTTCAAGCAATCGCCCCGTG 62.257 60.000 0.00 0.00 39.83 4.94
5403 11444 3.192422 AGATAGACTGCGTGCATAGATCC 59.808 47.826 0.00 0.00 0.00 3.36
5621 11740 8.144478 CAGCATAGACAAGCTAATAGGTCTTTA 58.856 37.037 9.28 0.00 40.76 1.85
5902 12073 6.820470 TCAAAAGCTTAACGGAAATGTTTG 57.180 33.333 0.00 0.00 33.32 2.93
5906 12077 5.768317 TCCTTCAAAAGCTTAACGGAAATG 58.232 37.500 0.00 0.00 0.00 2.32
5972 12169 2.128771 ACACATTCGCTTAAGCCCAT 57.871 45.000 21.53 10.71 37.91 4.00
6070 12275 4.963318 TGAAGAATAGGCCAGGTATCAG 57.037 45.455 5.01 0.00 0.00 2.90
6118 12323 6.628856 GCACTTTGTATACATTTGCTCATACG 59.371 38.462 19.30 0.41 0.00 3.06
6252 12462 4.407365 TCACTTCTGAGGTGATGTCAGTA 58.593 43.478 17.41 0.00 41.92 2.74
6495 12721 6.672836 GCAATTGCGAATTTTGGTATGAAAGG 60.673 38.462 15.87 0.00 0.00 3.11
6496 12722 6.128607 TGCAATTGCGAATTTTGGTATGAAAG 60.129 34.615 24.58 0.00 45.83 2.62
6534 12768 0.829333 TGCCAAGTTGCACCACAATT 59.171 45.000 0.00 0.00 41.27 2.32
6733 12995 4.127171 GCTGTTTGTAACACCTGAAGAGA 58.873 43.478 0.00 0.00 36.25 3.10
7138 13804 6.023603 TCCCCAATCCAGGTAATAGACTATC 58.976 44.000 0.00 0.00 0.00 2.08
7191 13857 2.270527 GGCAGAAGAGGCCCTGTC 59.729 66.667 0.00 0.00 45.87 3.51
7322 13988 2.343101 CAAACGATCTAGTTGGCGGAA 58.657 47.619 0.00 0.00 34.14 4.30
7337 15940 7.081349 TGCTATGTAAATTTTCAGACCAAACG 58.919 34.615 0.00 0.00 0.00 3.60
7471 16078 2.030091 CGCAGTGTGCAGATTCACTATG 59.970 50.000 7.31 0.00 45.36 2.23
7505 16113 5.769662 TGCCTAAGCCACATTAATTATGAGG 59.230 40.000 0.00 0.00 44.97 3.86
7522 16130 1.065926 TGCTCCAGTGACATGCCTAAG 60.066 52.381 0.00 0.00 0.00 2.18
7819 16611 1.726791 GATGAACATGAGCGTGAACGT 59.273 47.619 0.00 0.00 42.22 3.99
7917 16709 3.752412 TCCGACATATATACCGCGAAG 57.248 47.619 8.23 0.00 0.00 3.79
8006 16798 6.469275 CAGACGACAAAGTTTTTCCTTTCTTC 59.531 38.462 0.00 0.00 32.42 2.87
8013 16805 7.961283 GGAATATACAGACGACAAAGTTTTTCC 59.039 37.037 0.00 0.00 0.00 3.13
8047 16843 7.173907 CCTCTACAAAGTCATCTGAAACAATGT 59.826 37.037 8.30 8.30 0.00 2.71
8070 16866 3.005791 GCATAACAATTACATGCCCCCTC 59.994 47.826 0.00 0.00 39.30 4.30
8201 17017 5.219739 TGAAGGCATAGAGGTCCTTATCTT 58.780 41.667 0.00 0.00 40.07 2.40
8214 17030 5.277538 GCTTCTACGGAAAATGAAGGCATAG 60.278 44.000 0.00 0.00 37.12 2.23
8274 17508 1.202582 TGCTCTCTTGCTTCTACGGAC 59.797 52.381 0.00 0.00 0.00 4.79
8316 17550 9.141400 ACAAATCTAAGACAAGTAATTCGAGAC 57.859 33.333 0.00 0.00 0.00 3.36
8317 17551 9.355215 GACAAATCTAAGACAAGTAATTCGAGA 57.645 33.333 0.00 0.00 0.00 4.04
8318 17552 9.360093 AGACAAATCTAAGACAAGTAATTCGAG 57.640 33.333 0.00 0.00 31.46 4.04
8326 17560 8.407064 CCGTATCTAGACAAATCTAAGACAAGT 58.593 37.037 0.00 0.00 36.98 3.16
8327 17561 8.622157 TCCGTATCTAGACAAATCTAAGACAAG 58.378 37.037 0.00 0.00 36.98 3.16
8328 17562 8.515695 TCCGTATCTAGACAAATCTAAGACAA 57.484 34.615 0.00 0.00 36.98 3.18
8329 17563 8.568794 CATCCGTATCTAGACAAATCTAAGACA 58.431 37.037 0.00 0.00 36.98 3.41
8330 17564 8.569641 ACATCCGTATCTAGACAAATCTAAGAC 58.430 37.037 0.00 0.00 36.98 3.01
8331 17565 8.568794 CACATCCGTATCTAGACAAATCTAAGA 58.431 37.037 0.00 0.00 36.98 2.10
8332 17566 7.327275 GCACATCCGTATCTAGACAAATCTAAG 59.673 40.741 0.00 0.00 36.98 2.18
8333 17567 7.145985 GCACATCCGTATCTAGACAAATCTAA 58.854 38.462 0.00 0.00 36.98 2.10
8334 17568 6.264518 TGCACATCCGTATCTAGACAAATCTA 59.735 38.462 0.00 0.00 36.29 1.98
8335 17569 5.069119 TGCACATCCGTATCTAGACAAATCT 59.931 40.000 0.00 0.00 39.15 2.40
8336 17570 5.289595 TGCACATCCGTATCTAGACAAATC 58.710 41.667 0.00 0.00 0.00 2.17
8337 17571 5.276461 TGCACATCCGTATCTAGACAAAT 57.724 39.130 0.00 0.00 0.00 2.32
8338 17572 4.729227 TGCACATCCGTATCTAGACAAA 57.271 40.909 0.00 0.00 0.00 2.83
8339 17573 4.729227 TTGCACATCCGTATCTAGACAA 57.271 40.909 0.00 0.00 0.00 3.18
8340 17574 4.937201 ATTGCACATCCGTATCTAGACA 57.063 40.909 0.00 0.00 0.00 3.41
8341 17575 4.084328 GCAATTGCACATCCGTATCTAGAC 60.084 45.833 25.36 0.00 41.59 2.59
8342 17576 4.058124 GCAATTGCACATCCGTATCTAGA 58.942 43.478 25.36 0.00 41.59 2.43
8343 17577 3.120889 CGCAATTGCACATCCGTATCTAG 60.121 47.826 28.77 4.63 42.21 2.43
8344 17578 2.799978 CGCAATTGCACATCCGTATCTA 59.200 45.455 28.77 0.00 42.21 1.98
8345 17579 1.599071 CGCAATTGCACATCCGTATCT 59.401 47.619 28.77 0.00 42.21 1.98
8346 17580 1.334059 CCGCAATTGCACATCCGTATC 60.334 52.381 28.77 0.00 42.21 2.24
8347 17581 0.662619 CCGCAATTGCACATCCGTAT 59.337 50.000 28.77 0.00 42.21 3.06
8348 17582 0.391793 TCCGCAATTGCACATCCGTA 60.392 50.000 28.77 2.97 42.21 4.02
8349 17583 1.647545 CTCCGCAATTGCACATCCGT 61.648 55.000 28.77 0.00 42.21 4.69
8350 17584 1.063006 CTCCGCAATTGCACATCCG 59.937 57.895 28.77 11.99 42.21 4.18
8351 17585 1.226773 GCTCCGCAATTGCACATCC 60.227 57.895 28.77 9.85 42.21 3.51
8352 17586 0.171903 AAGCTCCGCAATTGCACATC 59.828 50.000 28.77 14.91 42.21 3.06
8353 17587 0.171903 GAAGCTCCGCAATTGCACAT 59.828 50.000 28.77 8.96 42.21 3.21
8354 17588 1.171549 TGAAGCTCCGCAATTGCACA 61.172 50.000 28.77 13.95 42.21 4.57
8355 17589 0.171903 ATGAAGCTCCGCAATTGCAC 59.828 50.000 28.77 15.09 42.21 4.57
8356 17590 0.171679 CATGAAGCTCCGCAATTGCA 59.828 50.000 28.77 10.64 42.21 4.08
8357 17591 0.526954 CCATGAAGCTCCGCAATTGC 60.527 55.000 20.76 20.76 37.78 3.56
8358 17592 1.065102 CTCCATGAAGCTCCGCAATTG 59.935 52.381 0.00 0.00 0.00 2.32
8359 17593 1.065199 TCTCCATGAAGCTCCGCAATT 60.065 47.619 0.00 0.00 0.00 2.32
8360 17594 0.543277 TCTCCATGAAGCTCCGCAAT 59.457 50.000 0.00 0.00 0.00 3.56
8361 17595 0.391661 GTCTCCATGAAGCTCCGCAA 60.392 55.000 0.00 0.00 0.00 4.85
8362 17596 1.219124 GTCTCCATGAAGCTCCGCA 59.781 57.895 0.00 0.00 0.00 5.69
8395 17829 1.993701 ATGTGTGGACTGTGGTGGCA 61.994 55.000 0.00 0.00 0.00 4.92
8459 17893 2.851263 AGAATCACCGGCTAAACACA 57.149 45.000 0.00 0.00 0.00 3.72


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.