Multiple sequence alignment - TraesCS4D01G335000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G335000 chr4D 100.000 2838 0 0 1 2838 493015593 493018430 0.000000e+00 5241.0
1 TraesCS4D01G335000 chr5A 93.633 1649 92 9 1 1640 673091186 673089542 0.000000e+00 2451.0
2 TraesCS4D01G335000 chr5A 87.220 892 51 24 1632 2482 673089516 673088647 0.000000e+00 957.0
3 TraesCS4D01G335000 chr5A 94.662 281 9 2 2558 2838 673088247 673087973 5.620000e-117 431.0
4 TraesCS4D01G335000 chr4B 87.078 2012 172 48 29 1988 631610065 631608090 0.000000e+00 2194.0
5 TraesCS4D01G335000 chr4B 93.972 282 8 3 2560 2838 631607341 631607066 4.370000e-113 418.0
6 TraesCS4D01G335000 chr5D 74.924 654 123 30 149 778 556093533 556094169 7.800000e-66 261.0
7 TraesCS4D01G335000 chr5D 75.123 406 84 15 375 768 526862144 526862544 1.050000e-39 174.0
8 TraesCS4D01G335000 chr2D 94.079 152 9 0 1417 1568 592411297 592411448 6.110000e-57 231.0
9 TraesCS4D01G335000 chr2D 91.892 148 12 0 1420 1567 619046367 619046220 1.030000e-49 207.0
10 TraesCS4D01G335000 chr2D 97.297 37 1 0 1754 1790 619046047 619046011 2.360000e-06 63.9
11 TraesCS4D01G335000 chr2A 74.286 630 125 29 149 753 169336961 169337578 6.110000e-57 231.0
12 TraesCS4D01G335000 chr2A 92.763 152 11 0 1417 1568 726986416 726986567 1.320000e-53 220.0
13 TraesCS4D01G335000 chr2A 89.634 164 16 1 1404 1567 749904132 749903970 1.030000e-49 207.0
14 TraesCS4D01G335000 chr2B 92.105 152 12 0 1417 1568 718396641 718396792 6.160000e-52 215.0
15 TraesCS4D01G335000 chr2B 88.372 172 19 1 1404 1575 756553094 756552924 3.710000e-49 206.0
16 TraesCS4D01G335000 chr2B 79.245 212 40 4 485 693 156598796 156598586 8.190000e-31 145.0
17 TraesCS4D01G335000 chr2B 100.000 29 0 0 1762 1790 756552612 756552584 1.000000e-03 54.7
18 TraesCS4D01G335000 chr3B 74.043 470 102 17 149 608 659781698 659781239 1.050000e-39 174.0
19 TraesCS4D01G335000 chr4A 73.091 550 112 31 204 731 724516793 724516258 2.260000e-36 163.0
20 TraesCS4D01G335000 chr4A 72.909 550 112 33 204 731 724510567 724510033 3.790000e-34 156.0
21 TraesCS4D01G335000 chr1A 77.441 297 50 17 479 769 28387302 28387017 8.140000e-36 161.0
22 TraesCS4D01G335000 chr7B 72.861 409 89 15 377 769 568774874 568774472 1.380000e-23 121.0
23 TraesCS4D01G335000 chr3D 83.200 125 21 0 1420 1544 500712380 500712504 6.420000e-22 115.0
24 TraesCS4D01G335000 chr3D 75.107 233 50 7 464 694 577662643 577662417 5.000000e-18 102.0
25 TraesCS4D01G335000 chr7D 72.656 384 85 15 189 564 13038954 13038583 2.990000e-20 110.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G335000 chr4D 493015593 493018430 2837 False 5241.000000 5241 100.000000 1 2838 1 chr4D.!!$F1 2837
1 TraesCS4D01G335000 chr5A 673087973 673091186 3213 True 1279.666667 2451 91.838333 1 2838 3 chr5A.!!$R1 2837
2 TraesCS4D01G335000 chr4B 631607066 631610065 2999 True 1306.000000 2194 90.525000 29 2838 2 chr4B.!!$R1 2809
3 TraesCS4D01G335000 chr5D 556093533 556094169 636 False 261.000000 261 74.924000 149 778 1 chr5D.!!$F2 629
4 TraesCS4D01G335000 chr2A 169336961 169337578 617 False 231.000000 231 74.286000 149 753 1 chr2A.!!$F1 604

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
925 959 0.253327 TACTTGCACCCACACACACA 59.747 50.0 0.0 0.0 0.0 3.72 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2650 3271 0.652592 GTCGATCATCCGTGCAAAGG 59.347 55.0 3.2 3.2 36.52 3.11 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
70 77 4.401525 CGTAAGTCTAGACACTGAACGT 57.598 45.455 24.44 0.00 34.34 3.99
143 150 6.500684 ACATATCTTGAGCGAACAAACATT 57.499 33.333 0.00 0.00 0.00 2.71
144 151 6.913170 ACATATCTTGAGCGAACAAACATTT 58.087 32.000 0.00 0.00 0.00 2.32
168 175 1.606601 GGGTTTCCCTTGCCTCCAC 60.607 63.158 0.00 0.00 41.34 4.02
242 250 1.751733 CGGTTGATCCCAGCCATTGAT 60.752 52.381 0.00 0.00 43.03 2.57
247 255 0.632835 ATCCCAGCCATTGATGGTGT 59.367 50.000 11.43 0.00 46.95 4.16
248 256 1.294041 TCCCAGCCATTGATGGTGTA 58.706 50.000 11.43 0.00 46.95 2.90
360 374 2.293184 TGCAGTTCTCCCCTTCTATCCT 60.293 50.000 0.00 0.00 0.00 3.24
366 380 1.146152 CTCCCCTTCTATCCTCCGTCT 59.854 57.143 0.00 0.00 0.00 4.18
370 384 1.874872 CCTTCTATCCTCCGTCTCGTC 59.125 57.143 0.00 0.00 0.00 4.20
372 386 0.835276 TCTATCCTCCGTCTCGTCCA 59.165 55.000 0.00 0.00 0.00 4.02
383 397 4.451150 TCGTCCAGCGGTGCATCC 62.451 66.667 9.63 0.00 41.72 3.51
459 486 2.678336 GGTGTTTGTCTTCGATGGATCC 59.322 50.000 4.20 4.20 0.00 3.36
470 497 3.527533 TCGATGGATCCGATTTTCGTTT 58.472 40.909 7.39 0.00 38.40 3.60
682 711 4.267928 CAGTGCTTGTAGTTATCGTTAGGC 59.732 45.833 0.00 0.00 0.00 3.93
709 738 4.327982 ACGGACATGGATGTAATCTCTG 57.672 45.455 0.00 0.00 44.71 3.35
757 786 7.614494 TGTCTTGACAACTGATGAATAGATCA 58.386 34.615 0.44 0.00 43.67 2.92
925 959 0.253327 TACTTGCACCCACACACACA 59.747 50.000 0.00 0.00 0.00 3.72
926 960 1.312371 ACTTGCACCCACACACACAC 61.312 55.000 0.00 0.00 0.00 3.82
1166 1200 1.065928 GTACCACATCCGCTCTCCG 59.934 63.158 0.00 0.00 0.00 4.63
1274 1308 0.320771 CCGTCCAGTTCACCTTCCAG 60.321 60.000 0.00 0.00 0.00 3.86
1321 1355 4.834453 CGGCTCCAGCTCCTGCAG 62.834 72.222 6.78 6.78 42.74 4.41
1605 1645 5.099575 GGCCATTTGTAGTTTAACGGATTG 58.900 41.667 0.00 0.00 0.00 2.67
1612 1652 5.653507 TGTAGTTTAACGGATTGCGTCTAT 58.346 37.500 3.00 0.00 0.00 1.98
1615 1655 6.764877 AGTTTAACGGATTGCGTCTATATG 57.235 37.500 3.00 0.00 0.00 1.78
1635 1675 3.673902 TGTACTTGAAGCTAGCATGCAA 58.326 40.909 21.98 15.72 34.99 4.08
1687 1769 1.859841 TAGTCCTCCCCGACTGCAGA 61.860 60.000 23.35 0.00 43.04 4.26
1890 1987 3.488047 GCATGTGCTTGCTACTTACATGG 60.488 47.826 18.15 6.61 45.25 3.66
1893 1990 3.501828 TGTGCTTGCTACTTACATGGTTG 59.498 43.478 0.00 0.00 0.00 3.77
1912 2010 4.383118 GGTTGATTGTCCAAGCTAGCTCTA 60.383 45.833 19.65 3.42 40.32 2.43
1928 2026 3.761218 AGCTCTAGGTGATGGACATATCG 59.239 47.826 0.00 0.00 0.00 2.92
2000 2102 4.468095 ACGTAGTAGCTTTGTTGCAAAG 57.532 40.909 15.02 15.02 41.94 2.77
2013 2115 7.148306 GCTTTGTTGCAAAGTTAGGCTAGTATA 60.148 37.037 18.87 0.00 0.00 1.47
2014 2116 8.801882 TTTGTTGCAAAGTTAGGCTAGTATAT 57.198 30.769 0.00 0.00 0.00 0.86
2057 2159 3.197549 TGAGGTGATGGACGAATCAATCA 59.802 43.478 0.00 1.56 42.16 2.57
2061 2163 4.319046 GGTGATGGACGAATCAATCAATCG 60.319 45.833 0.00 0.00 45.24 3.34
2069 2171 4.151335 ACGAATCAATCAATCGAGCTATGC 59.849 41.667 1.03 0.00 39.73 3.14
2106 2212 1.395954 CGTCACAAGTGATGGCTGATG 59.604 52.381 13.33 0.00 42.18 3.07
2107 2213 1.131883 GTCACAAGTGATGGCTGATGC 59.868 52.381 6.15 0.00 42.18 3.91
2108 2214 1.170442 CACAAGTGATGGCTGATGCA 58.830 50.000 0.00 0.00 41.91 3.96
2110 2216 1.749063 ACAAGTGATGGCTGATGCATG 59.251 47.619 2.46 0.00 41.91 4.06
2111 2217 2.021457 CAAGTGATGGCTGATGCATGA 58.979 47.619 2.46 0.00 41.91 3.07
2112 2218 2.623416 CAAGTGATGGCTGATGCATGAT 59.377 45.455 2.46 0.00 41.91 2.45
2113 2219 2.230660 AGTGATGGCTGATGCATGATG 58.769 47.619 2.46 0.00 41.91 3.07
2124 2231 5.447413 GCTGATGCATGATGATAAAGATCGG 60.447 44.000 2.46 0.00 39.41 4.18
2131 2238 6.653183 CATGATGATAAAGATCGGTTGTGTC 58.347 40.000 0.00 0.00 34.49 3.67
2134 2244 3.932710 TGATAAAGATCGGTTGTGTCAGC 59.067 43.478 0.00 0.00 34.49 4.26
2143 2253 3.825160 TTGTGTCAGCCCAGACCGC 62.825 63.158 0.00 0.00 37.73 5.68
2145 2255 3.555324 TGTCAGCCCAGACCGCAA 61.555 61.111 0.00 0.00 37.73 4.85
2146 2256 2.743928 GTCAGCCCAGACCGCAAG 60.744 66.667 0.00 0.00 32.36 4.01
2147 2257 3.241530 TCAGCCCAGACCGCAAGT 61.242 61.111 0.00 0.00 0.00 3.16
2148 2258 3.052082 CAGCCCAGACCGCAAGTG 61.052 66.667 0.00 0.00 0.00 3.16
2149 2259 4.335647 AGCCCAGACCGCAAGTGG 62.336 66.667 0.00 0.00 0.00 4.00
2171 2281 4.436986 GGTCGTGGATTCGATTTCCTTTTC 60.437 45.833 14.13 5.06 41.78 2.29
2229 2346 7.556844 ACGTGGAATGGAATCCTATGTATATC 58.443 38.462 0.00 0.00 40.35 1.63
2241 2358 0.834687 TGTATATCTCCCCACCGGCC 60.835 60.000 0.00 0.00 0.00 6.13
2243 2360 0.104882 TATATCTCCCCACCGGCCAA 60.105 55.000 0.00 0.00 0.00 4.52
2246 2363 4.722700 CTCCCCACCGGCCAACAG 62.723 72.222 0.00 0.00 0.00 3.16
2253 2370 3.419759 CCGGCCAACAGCACGTAC 61.420 66.667 2.24 0.00 46.50 3.67
2257 2374 2.677003 GCCAACAGCACGTACGCAT 61.677 57.895 16.72 0.00 42.97 4.73
2258 2375 1.132436 CCAACAGCACGTACGCATG 59.868 57.895 16.72 13.84 0.00 4.06
2259 2376 1.509787 CAACAGCACGTACGCATGC 60.510 57.895 19.80 19.80 42.39 4.06
2260 2377 1.958715 AACAGCACGTACGCATGCA 60.959 52.632 26.43 0.00 44.59 3.96
2261 2378 1.900585 AACAGCACGTACGCATGCAG 61.901 55.000 26.43 22.07 44.59 4.41
2262 2379 3.490759 AGCACGTACGCATGCAGC 61.491 61.111 26.43 16.18 44.59 5.25
2266 2383 1.958715 ACGTACGCATGCAGCACAA 60.959 52.632 19.57 0.00 46.13 3.33
2267 2384 1.206325 CGTACGCATGCAGCACAAA 59.794 52.632 19.57 0.00 46.13 2.83
2268 2385 0.179192 CGTACGCATGCAGCACAAAT 60.179 50.000 19.57 0.00 46.13 2.32
2269 2386 1.061857 CGTACGCATGCAGCACAAATA 59.938 47.619 19.57 0.00 46.13 1.40
2270 2387 2.286359 CGTACGCATGCAGCACAAATAT 60.286 45.455 19.57 0.00 46.13 1.28
2271 2388 2.197792 ACGCATGCAGCACAAATATG 57.802 45.000 19.57 0.00 46.13 1.78
2272 2389 1.202325 ACGCATGCAGCACAAATATGG 60.202 47.619 19.57 0.00 46.13 2.74
2273 2390 1.202325 CGCATGCAGCACAAATATGGT 60.202 47.619 19.57 0.00 46.13 3.55
2338 2468 2.094854 GGCAATGCTATGCTAATCTGGC 60.095 50.000 4.82 0.00 45.68 4.85
2370 2500 7.914346 CGGACGTGTTCCTAATATCCTAATATC 59.086 40.741 0.00 0.00 43.25 1.63
2372 2502 7.256286 ACGTGTTCCTAATATCCTAATATCGC 58.744 38.462 0.00 0.00 0.00 4.58
2386 2516 6.588756 TCCTAATATCGCGTGTATTCCATTTC 59.411 38.462 17.97 0.00 0.00 2.17
2396 2526 7.958567 CGCGTGTATTCCATTTCTTAAAAGTTA 59.041 33.333 0.00 0.00 0.00 2.24
2397 2527 9.058424 GCGTGTATTCCATTTCTTAAAAGTTAC 57.942 33.333 0.00 0.00 0.00 2.50
2472 2630 8.347771 ACACCATTCGATTAATCATGAAATCTG 58.652 33.333 15.57 9.47 31.29 2.90
2516 2836 7.997107 TGGTATTATAAGCGTAGACAAGTTG 57.003 36.000 0.00 0.00 0.00 3.16
2519 3113 8.538039 GGTATTATAAGCGTAGACAAGTTGTTC 58.462 37.037 10.45 3.80 0.00 3.18
2530 3124 8.645487 CGTAGACAAGTTGTTCCTATAAACTTC 58.355 37.037 10.45 0.00 41.08 3.01
2538 3138 7.719633 AGTTGTTCCTATAAACTTCATGTGTGT 59.280 33.333 0.00 0.00 29.98 3.72
2642 3263 5.771666 TGGGGAGTATAAACCACTACTATCG 59.228 44.000 0.00 0.00 0.00 2.92
2745 3366 2.431057 AGCTAGTACTACCACACATGCC 59.569 50.000 0.00 0.00 0.00 4.40
2746 3367 2.798499 GCTAGTACTACCACACATGCCG 60.798 54.545 0.00 0.00 0.00 5.69
2747 3368 0.108329 AGTACTACCACACATGCCGC 60.108 55.000 0.00 0.00 0.00 6.53
2748 3369 0.108329 GTACTACCACACATGCCGCT 60.108 55.000 0.00 0.00 0.00 5.52
2801 3425 3.501828 TGTTTGTGCGTGCAGAATATCTT 59.498 39.130 5.20 0.00 0.00 2.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 38 9.260002 AGACTTACGTCGGTTTATCTTTAAAAA 57.740 29.630 0.00 0.00 44.93 1.94
41 48 4.997395 AGTGTCTAGACTTACGTCGGTTTA 59.003 41.667 23.01 0.00 44.93 2.01
70 77 4.537688 AGGGTGATTGATTTCCTTCTCTCA 59.462 41.667 0.00 0.00 0.00 3.27
179 187 0.553819 AGGAGACTAGGCTGATCGGT 59.446 55.000 0.42 0.00 40.61 4.69
242 250 4.342665 CCTAAAAACAAAGCCCTTACACCA 59.657 41.667 0.00 0.00 0.00 4.17
247 255 6.547930 AAACACCTAAAAACAAAGCCCTTA 57.452 33.333 0.00 0.00 0.00 2.69
248 256 5.429681 AAACACCTAAAAACAAAGCCCTT 57.570 34.783 0.00 0.00 0.00 3.95
405 419 3.070018 CGAGATCTGCCAAAGACACTTT 58.930 45.455 0.00 0.00 37.88 2.66
459 486 4.997107 TGAACGTAGACAAACGAAAATCG 58.003 39.130 3.10 0.00 45.68 3.34
470 497 4.082949 CCTGTAGACACATGAACGTAGACA 60.083 45.833 0.00 1.13 33.14 3.41
655 684 3.119101 ACGATAACTACAAGCACTGGAGG 60.119 47.826 3.34 0.00 40.84 4.30
709 738 7.927048 ACAGTACAAAGAACACCAAAGATAAC 58.073 34.615 0.00 0.00 0.00 1.89
1034 1068 3.045601 AGTATGTGTGCAAGGTGAGAC 57.954 47.619 0.00 0.00 0.00 3.36
1225 1259 1.153628 GTGAGCGCCGTGTAAGGAT 60.154 57.895 2.29 0.00 0.00 3.24
1321 1355 1.613520 GGAAGCCAAAGGGGTAGTCAC 60.614 57.143 0.00 0.00 46.38 3.67
1605 1645 5.569823 GCTAGCTTCAAGTACATATAGACGC 59.430 44.000 7.70 0.00 0.00 5.19
1612 1652 5.022282 TGCATGCTAGCTTCAAGTACATA 57.978 39.130 20.33 0.00 34.99 2.29
1615 1655 3.436704 TGTTGCATGCTAGCTTCAAGTAC 59.563 43.478 20.33 6.96 34.99 2.73
1635 1675 1.909700 ACGTTCCTGCATCCAAATGT 58.090 45.000 0.00 0.00 35.18 2.71
1668 1741 1.379977 CTGCAGTCGGGGAGGACTA 60.380 63.158 5.25 0.00 45.20 2.59
1687 1769 3.667282 CCGTTGCTGCTGCTGCTT 61.667 61.111 27.67 0.00 40.48 3.91
1725 1807 1.343069 GAAGTGGAGAGTGGACCTGT 58.657 55.000 0.00 0.00 0.00 4.00
1796 1881 3.080765 TCGATGGACCATGGCCGT 61.081 61.111 12.99 15.43 0.00 5.68
1807 1892 2.906182 TAAGCTGCTGCGGTCGATGG 62.906 60.000 10.62 0.00 45.42 3.51
1815 1900 2.874701 AGTGGATAATTAAGCTGCTGCG 59.125 45.455 1.35 0.00 45.42 5.18
1890 1987 3.604582 AGAGCTAGCTTGGACAATCAAC 58.395 45.455 20.42 0.76 0.00 3.18
1893 1990 3.386402 ACCTAGAGCTAGCTTGGACAATC 59.614 47.826 27.76 12.26 35.23 2.67
1912 2010 9.605275 CAATTAATATCGATATGTCCATCACCT 57.395 33.333 18.42 1.83 0.00 4.00
1928 2026 8.436200 GCATAGTTCACGACTCCAATTAATATC 58.564 37.037 0.00 0.00 39.86 1.63
1937 2036 2.233676 ACATGCATAGTTCACGACTCCA 59.766 45.455 0.00 0.00 39.86 3.86
1963 2062 7.598493 AGCTACTACGTACTAGCTAGATTACAC 59.402 40.741 25.89 13.94 43.21 2.90
2057 2159 4.554723 GCCGTTAATTTGCATAGCTCGATT 60.555 41.667 0.00 0.00 0.00 3.34
2061 2163 3.691049 TGCCGTTAATTTGCATAGCTC 57.309 42.857 0.00 0.00 0.00 4.09
2106 2212 5.008019 ACACAACCGATCTTTATCATCATGC 59.992 40.000 0.00 0.00 31.93 4.06
2107 2213 6.258507 TGACACAACCGATCTTTATCATCATG 59.741 38.462 0.00 0.00 31.93 3.07
2108 2214 6.348498 TGACACAACCGATCTTTATCATCAT 58.652 36.000 0.00 0.00 31.93 2.45
2110 2216 5.277058 GCTGACACAACCGATCTTTATCATC 60.277 44.000 0.00 0.00 31.93 2.92
2111 2217 4.572389 GCTGACACAACCGATCTTTATCAT 59.428 41.667 0.00 0.00 31.93 2.45
2112 2218 3.932710 GCTGACACAACCGATCTTTATCA 59.067 43.478 0.00 0.00 31.93 2.15
2113 2219 3.309954 GGCTGACACAACCGATCTTTATC 59.690 47.826 0.00 0.00 0.00 1.75
2124 2231 1.961277 CGGTCTGGGCTGACACAAC 60.961 63.158 11.77 0.00 38.61 3.32
2131 2238 3.052082 CACTTGCGGTCTGGGCTG 61.052 66.667 0.00 0.00 0.00 4.85
2143 2253 2.010145 ATCGAATCCACGACCACTTG 57.990 50.000 0.00 0.00 44.84 3.16
2145 2255 2.618053 GAAATCGAATCCACGACCACT 58.382 47.619 0.00 0.00 44.84 4.00
2146 2256 1.664151 GGAAATCGAATCCACGACCAC 59.336 52.381 14.03 0.00 44.84 4.16
2147 2257 1.553248 AGGAAATCGAATCCACGACCA 59.447 47.619 19.37 0.00 44.84 4.02
2148 2258 2.311124 AGGAAATCGAATCCACGACC 57.689 50.000 19.37 2.94 44.84 4.79
2149 2259 4.392138 AGAAAAGGAAATCGAATCCACGAC 59.608 41.667 19.37 10.03 44.84 4.34
2150 2260 4.575885 AGAAAAGGAAATCGAATCCACGA 58.424 39.130 19.37 0.00 46.04 4.35
2171 2281 6.203723 GCTAGGACAACATATAAAGCAGGAAG 59.796 42.308 0.00 0.00 0.00 3.46
2202 2316 3.181454 ACATAGGATTCCATTCCACGTCC 60.181 47.826 5.29 0.00 38.32 4.79
2229 2346 4.722700 CTGTTGGCCGGTGGGGAG 62.723 72.222 1.90 0.00 38.47 4.30
2241 2358 4.723794 CATGCGTACGTGCTGTTG 57.276 55.556 17.90 2.39 35.36 3.33
2251 2368 2.033174 CCATATTTGTGCTGCATGCGTA 59.967 45.455 14.09 4.69 46.63 4.42
2253 2370 1.202325 ACCATATTTGTGCTGCATGCG 60.202 47.619 14.09 9.16 46.63 4.73
2257 2374 6.601217 TGAATACTAACCATATTTGTGCTGCA 59.399 34.615 0.00 0.00 0.00 4.41
2258 2375 6.912591 GTGAATACTAACCATATTTGTGCTGC 59.087 38.462 0.00 0.00 0.00 5.25
2259 2376 7.417612 GGTGAATACTAACCATATTTGTGCTG 58.582 38.462 0.00 0.00 36.41 4.41
2260 2377 6.260050 CGGTGAATACTAACCATATTTGTGCT 59.740 38.462 0.00 0.00 36.14 4.40
2261 2378 6.037830 ACGGTGAATACTAACCATATTTGTGC 59.962 38.462 0.00 0.00 36.14 4.57
2262 2379 7.548196 ACGGTGAATACTAACCATATTTGTG 57.452 36.000 0.00 0.00 36.14 3.33
2268 2385 9.033481 CGAAATTAACGGTGAATACTAACCATA 57.967 33.333 0.00 0.00 36.14 2.74
2269 2386 7.466320 GCGAAATTAACGGTGAATACTAACCAT 60.466 37.037 6.99 0.00 36.14 3.55
2270 2387 6.183360 GCGAAATTAACGGTGAATACTAACCA 60.183 38.462 6.99 0.00 36.14 3.67
2271 2388 6.036408 AGCGAAATTAACGGTGAATACTAACC 59.964 38.462 8.44 0.00 39.89 2.85
2272 2389 6.997222 AGCGAAATTAACGGTGAATACTAAC 58.003 36.000 8.44 0.00 39.89 2.34
2273 2390 8.757789 CATAGCGAAATTAACGGTGAATACTAA 58.242 33.333 16.09 0.00 41.38 2.24
2318 2448 2.413765 CGCCAGATTAGCATAGCATTGC 60.414 50.000 0.00 0.00 43.09 3.56
2338 2468 3.838468 GGAACACGTCCGTTCTCG 58.162 61.111 15.79 0.00 43.92 4.04
2360 2490 5.654603 TGGAATACACGCGATATTAGGAT 57.345 39.130 15.93 0.00 0.00 3.24
2370 2500 6.311723 ACTTTTAAGAAATGGAATACACGCG 58.688 36.000 3.53 3.53 0.00 6.01
2396 2526 9.612066 AACTTGGTCAATGTTGATAAAATTTGT 57.388 25.926 0.00 0.00 39.73 2.83
2499 2819 5.148651 AGGAACAACTTGTCTACGCTTAT 57.851 39.130 0.00 0.00 0.00 1.73
2503 2823 6.589139 AGTTTATAGGAACAACTTGTCTACGC 59.411 38.462 0.00 0.00 31.94 4.42
2516 2836 7.549488 AGCTACACACATGAAGTTTATAGGAAC 59.451 37.037 0.00 0.00 0.00 3.62
2519 3113 7.041721 TGAGCTACACACATGAAGTTTATAGG 58.958 38.462 0.00 0.00 0.00 2.57
2530 3124 4.609113 CGTGAAAGTTGAGCTACACACATG 60.609 45.833 0.00 0.00 35.73 3.21
2538 3138 4.265904 TCATTCCGTGAAAGTTGAGCTA 57.734 40.909 0.00 0.00 32.78 3.32
2595 3216 1.595093 GGGGCCATTTCCACTTGTCG 61.595 60.000 4.39 0.00 0.00 4.35
2650 3271 0.652592 GTCGATCATCCGTGCAAAGG 59.347 55.000 3.20 3.20 36.52 3.11
2746 3367 6.434018 AGAGAAAGAAAAGATGCACATAGC 57.566 37.500 0.00 0.00 45.96 2.97
2747 3368 8.266392 AGAAGAGAAAGAAAAGATGCACATAG 57.734 34.615 0.00 0.00 0.00 2.23
2748 3369 8.627208 AAGAAGAGAAAGAAAAGATGCACATA 57.373 30.769 0.00 0.00 0.00 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.