Multiple sequence alignment - TraesCS4D01G334000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G334000 chr4D 100.000 3212 0 0 1 3212 491380875 491384086 0.000000e+00 5932.0
1 TraesCS4D01G334000 chr5D 98.884 2598 22 3 616 3212 78602934 78600343 0.000000e+00 4630.0
2 TraesCS4D01G334000 chr5D 98.244 2050 31 4 615 2662 555413535 555415581 0.000000e+00 3581.0
3 TraesCS4D01G334000 chr1D 98.346 2599 40 2 615 3212 316243969 316241373 0.000000e+00 4558.0
4 TraesCS4D01G334000 chr1D 90.789 152 14 0 140 291 256780256 256780105 1.510000e-48 204.0
5 TraesCS4D01G334000 chr3D 98.306 2598 42 2 616 3212 334133 336729 0.000000e+00 4553.0
6 TraesCS4D01G334000 chr3D 97.498 2598 51 6 616 3212 468955024 468957608 0.000000e+00 4425.0
7 TraesCS4D01G334000 chr2D 98.120 2607 40 4 612 3212 130079137 130076534 0.000000e+00 4534.0
8 TraesCS4D01G334000 chr2D 97.921 2598 51 3 616 3212 617340745 617343340 0.000000e+00 4495.0
9 TraesCS4D01G334000 chr2D 82.143 84 13 1 2727 2808 573424733 573424816 1.600000e-08 71.3
10 TraesCS4D01G334000 chr6D 97.805 2597 52 2 616 3212 420171217 420173808 0.000000e+00 4475.0
11 TraesCS4D01G334000 chr4A 96.046 2605 79 11 616 3212 731637348 731634760 0.000000e+00 4218.0
12 TraesCS4D01G334000 chr5A 95.291 2612 88 11 616 3212 540625170 540622579 0.000000e+00 4109.0
13 TraesCS4D01G334000 chr5A 94.338 2614 101 16 616 3212 666200505 666197922 0.000000e+00 3964.0
14 TraesCS4D01G334000 chr2B 93.142 904 47 2 2310 3212 191887813 191886924 0.000000e+00 1312.0
15 TraesCS4D01G334000 chr2A 94.133 767 29 4 2446 3212 695189713 695190463 0.000000e+00 1153.0
16 TraesCS4D01G334000 chr3A 91.972 436 15 12 104 527 703425011 703425438 7.670000e-166 593.0
17 TraesCS4D01G334000 chr4B 86.253 451 41 19 111 547 673249180 673248737 1.350000e-128 470.0
18 TraesCS4D01G334000 chr4B 100.000 42 0 0 1 42 673249279 673249238 9.550000e-11 78.7
19 TraesCS4D01G334000 chrUn 83.556 450 42 24 120 543 99827286 99827729 3.000000e-105 392.0
20 TraesCS4D01G334000 chrUn 100.000 38 0 0 1 38 99827199 99827236 1.600000e-08 71.3
21 TraesCS4D01G334000 chr1A 91.447 152 13 0 140 291 330083461 330083310 3.250000e-50 209.0
22 TraesCS4D01G334000 chr1B 90.789 152 14 0 140 291 356455312 356455463 1.510000e-48 204.0
23 TraesCS4D01G334000 chr1B 90.580 138 13 0 140 277 229489089 229488952 1.970000e-42 183.0
24 TraesCS4D01G334000 chr6A 91.729 133 11 0 140 272 586055420 586055288 5.470000e-43 185.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G334000 chr4D 491380875 491384086 3211 False 5932.00 5932 100.0000 1 3212 1 chr4D.!!$F1 3211
1 TraesCS4D01G334000 chr5D 78600343 78602934 2591 True 4630.00 4630 98.8840 616 3212 1 chr5D.!!$R1 2596
2 TraesCS4D01G334000 chr5D 555413535 555415581 2046 False 3581.00 3581 98.2440 615 2662 1 chr5D.!!$F1 2047
3 TraesCS4D01G334000 chr1D 316241373 316243969 2596 True 4558.00 4558 98.3460 615 3212 1 chr1D.!!$R2 2597
4 TraesCS4D01G334000 chr3D 334133 336729 2596 False 4553.00 4553 98.3060 616 3212 1 chr3D.!!$F1 2596
5 TraesCS4D01G334000 chr3D 468955024 468957608 2584 False 4425.00 4425 97.4980 616 3212 1 chr3D.!!$F2 2596
6 TraesCS4D01G334000 chr2D 130076534 130079137 2603 True 4534.00 4534 98.1200 612 3212 1 chr2D.!!$R1 2600
7 TraesCS4D01G334000 chr2D 617340745 617343340 2595 False 4495.00 4495 97.9210 616 3212 1 chr2D.!!$F2 2596
8 TraesCS4D01G334000 chr6D 420171217 420173808 2591 False 4475.00 4475 97.8050 616 3212 1 chr6D.!!$F1 2596
9 TraesCS4D01G334000 chr4A 731634760 731637348 2588 True 4218.00 4218 96.0460 616 3212 1 chr4A.!!$R1 2596
10 TraesCS4D01G334000 chr5A 540622579 540625170 2591 True 4109.00 4109 95.2910 616 3212 1 chr5A.!!$R1 2596
11 TraesCS4D01G334000 chr5A 666197922 666200505 2583 True 3964.00 3964 94.3380 616 3212 1 chr5A.!!$R2 2596
12 TraesCS4D01G334000 chr2B 191886924 191887813 889 True 1312.00 1312 93.1420 2310 3212 1 chr2B.!!$R1 902
13 TraesCS4D01G334000 chr2A 695189713 695190463 750 False 1153.00 1153 94.1330 2446 3212 1 chr2A.!!$F1 766
14 TraesCS4D01G334000 chr4B 673248737 673249279 542 True 274.35 470 93.1265 1 547 2 chr4B.!!$R1 546
15 TraesCS4D01G334000 chrUn 99827199 99827729 530 False 231.65 392 91.7780 1 543 2 chrUn.!!$F1 542

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
248 253 0.179145 CGAACCCGTACTGGCTGTAG 60.179 60.0 2.78 0.0 35.87 2.74 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2261 2323 4.282957 GCATCAGACTGATCATTCCTAGGA 59.717 45.833 15.24 7.62 34.28 2.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 1.525077 CGCTTGCGGCCCCTTTATA 60.525 57.895 7.16 0.00 37.74 0.98
43 44 1.507141 CGCTTGCGGCCCCTTTATAG 61.507 60.000 7.16 0.00 37.74 1.31
44 45 1.172812 GCTTGCGGCCCCTTTATAGG 61.173 60.000 0.00 0.00 41.60 2.57
61 62 8.417884 CCTTTATAGGGTTTTGTTTTTCAGTCA 58.582 33.333 0.00 0.00 37.94 3.41
62 63 9.463443 CTTTATAGGGTTTTGTTTTTCAGTCAG 57.537 33.333 0.00 0.00 0.00 3.51
64 65 7.839680 ATAGGGTTTTGTTTTTCAGTCAGAT 57.160 32.000 0.00 0.00 0.00 2.90
66 67 6.573434 AGGGTTTTGTTTTTCAGTCAGATTC 58.427 36.000 0.00 0.00 0.00 2.52
67 68 6.154363 AGGGTTTTGTTTTTCAGTCAGATTCA 59.846 34.615 0.00 0.00 0.00 2.57
68 69 6.986231 GGGTTTTGTTTTTCAGTCAGATTCAT 59.014 34.615 0.00 0.00 0.00 2.57
70 71 8.542953 GGTTTTGTTTTTCAGTCAGATTCATTC 58.457 33.333 0.00 0.00 0.00 2.67
73 74 6.973843 TGTTTTTCAGTCAGATTCATTCAGG 58.026 36.000 0.00 0.00 0.00 3.86
77 78 7.912056 TTTCAGTCAGATTCATTCAGGTAAG 57.088 36.000 0.00 0.00 0.00 2.34
82 83 4.637534 TCAGATTCATTCAGGTAAGCAAGC 59.362 41.667 0.00 0.00 0.00 4.01
83 84 4.397103 CAGATTCATTCAGGTAAGCAAGCA 59.603 41.667 0.00 0.00 0.00 3.91
84 85 5.012239 AGATTCATTCAGGTAAGCAAGCAA 58.988 37.500 0.00 0.00 0.00 3.91
86 87 4.970662 TCATTCAGGTAAGCAAGCAATC 57.029 40.909 0.00 0.00 0.00 2.67
88 89 4.766373 TCATTCAGGTAAGCAAGCAATCAA 59.234 37.500 0.00 0.00 0.00 2.57
89 90 5.419788 TCATTCAGGTAAGCAAGCAATCAAT 59.580 36.000 0.00 0.00 0.00 2.57
90 91 4.970662 TCAGGTAAGCAAGCAATCAATC 57.029 40.909 0.00 0.00 0.00 2.67
92 93 3.026694 AGGTAAGCAAGCAATCAATCCC 58.973 45.455 0.00 0.00 0.00 3.85
93 94 2.760092 GGTAAGCAAGCAATCAATCCCA 59.240 45.455 0.00 0.00 0.00 4.37
95 96 4.141869 GGTAAGCAAGCAATCAATCCCAAT 60.142 41.667 0.00 0.00 0.00 3.16
96 97 3.814005 AGCAAGCAATCAATCCCAATC 57.186 42.857 0.00 0.00 0.00 2.67
97 98 2.433239 AGCAAGCAATCAATCCCAATCC 59.567 45.455 0.00 0.00 0.00 3.01
103 104 3.495453 GCAATCAATCCCAATCCCAATGG 60.495 47.826 0.00 0.00 37.71 3.16
105 106 3.772955 TCAATCCCAATCCCAATGGAA 57.227 42.857 0.00 0.00 45.98 3.53
106 107 4.072052 TCAATCCCAATCCCAATGGAAA 57.928 40.909 0.00 0.00 45.98 3.13
107 108 4.433255 TCAATCCCAATCCCAATGGAAAA 58.567 39.130 0.00 0.00 45.98 2.29
108 109 4.224818 TCAATCCCAATCCCAATGGAAAAC 59.775 41.667 0.00 0.00 45.98 2.43
109 110 3.266477 TCCCAATCCCAATGGAAAACA 57.734 42.857 0.00 0.00 45.98 2.83
110 111 3.591789 TCCCAATCCCAATGGAAAACAA 58.408 40.909 0.00 0.00 45.98 2.83
111 112 3.582208 TCCCAATCCCAATGGAAAACAAG 59.418 43.478 0.00 0.00 45.98 3.16
112 113 3.582208 CCCAATCCCAATGGAAAACAAGA 59.418 43.478 0.00 0.00 45.98 3.02
120 121 6.040842 TCCCAATGGAAAACAAGAAGAAGAAG 59.959 38.462 0.00 0.00 37.86 2.85
134 135 7.728847 AGAAGAAGAAGAAGAAGAAAGAAGC 57.271 36.000 0.00 0.00 0.00 3.86
158 163 1.566211 ACTGCCTGTCTGCTAGTGAT 58.434 50.000 0.00 0.00 0.00 3.06
170 175 3.296854 TGCTAGTGATCCTACGATGGTT 58.703 45.455 0.00 0.00 0.00 3.67
228 233 4.778143 GGCCGATGTCGCCCTTGT 62.778 66.667 0.00 0.00 33.59 3.16
229 234 3.195698 GCCGATGTCGCCCTTGTC 61.196 66.667 0.00 0.00 38.18 3.18
230 235 2.885644 CCGATGTCGCCCTTGTCG 60.886 66.667 0.00 0.00 38.18 4.35
231 236 2.180769 CGATGTCGCCCTTGTCGA 59.819 61.111 0.00 0.00 34.46 4.20
232 237 1.445410 CGATGTCGCCCTTGTCGAA 60.445 57.895 0.00 0.00 37.73 3.71
233 238 1.683790 CGATGTCGCCCTTGTCGAAC 61.684 60.000 0.00 0.00 37.73 3.95
234 239 1.359459 GATGTCGCCCTTGTCGAACC 61.359 60.000 0.00 0.00 37.73 3.62
235 240 2.741211 GTCGCCCTTGTCGAACCC 60.741 66.667 0.00 0.00 37.73 4.11
236 241 4.367023 TCGCCCTTGTCGAACCCG 62.367 66.667 0.00 0.00 32.53 5.28
237 242 4.675029 CGCCCTTGTCGAACCCGT 62.675 66.667 0.00 0.00 37.05 5.28
238 243 2.658422 GCCCTTGTCGAACCCGTA 59.342 61.111 0.00 0.00 37.05 4.02
239 244 1.739196 GCCCTTGTCGAACCCGTAC 60.739 63.158 0.00 0.00 37.05 3.67
240 245 1.969862 CCCTTGTCGAACCCGTACT 59.030 57.895 0.00 0.00 37.05 2.73
241 246 0.389426 CCCTTGTCGAACCCGTACTG 60.389 60.000 0.00 0.00 37.05 2.74
242 247 0.389426 CCTTGTCGAACCCGTACTGG 60.389 60.000 1.12 1.12 37.05 4.00
243 248 1.005867 TTGTCGAACCCGTACTGGC 60.006 57.895 2.78 0.00 35.87 4.85
244 249 1.466025 TTGTCGAACCCGTACTGGCT 61.466 55.000 2.78 0.00 35.87 4.75
245 250 1.445582 GTCGAACCCGTACTGGCTG 60.446 63.158 2.78 0.00 35.87 4.85
246 251 1.904865 TCGAACCCGTACTGGCTGT 60.905 57.895 2.78 1.74 35.87 4.40
247 252 0.608856 TCGAACCCGTACTGGCTGTA 60.609 55.000 2.78 0.00 35.87 2.74
248 253 0.179145 CGAACCCGTACTGGCTGTAG 60.179 60.000 2.78 0.00 35.87 2.74
249 254 1.180029 GAACCCGTACTGGCTGTAGA 58.820 55.000 2.78 0.00 35.87 2.59
250 255 1.134560 GAACCCGTACTGGCTGTAGAG 59.865 57.143 2.78 2.72 35.87 2.43
251 256 0.683504 ACCCGTACTGGCTGTAGAGG 60.684 60.000 14.57 14.57 35.87 3.69
252 257 0.683504 CCCGTACTGGCTGTAGAGGT 60.684 60.000 18.17 0.00 35.87 3.85
253 258 1.409241 CCCGTACTGGCTGTAGAGGTA 60.409 57.143 18.17 0.00 35.87 3.08
254 259 1.948145 CCGTACTGGCTGTAGAGGTAG 59.052 57.143 4.32 0.00 0.00 3.18
255 260 2.641305 CGTACTGGCTGTAGAGGTAGT 58.359 52.381 4.32 0.00 0.00 2.73
256 261 3.432749 CCGTACTGGCTGTAGAGGTAGTA 60.433 52.174 4.32 0.00 0.00 1.82
257 262 3.559242 CGTACTGGCTGTAGAGGTAGTAC 59.441 52.174 4.32 0.00 37.94 2.73
258 263 3.733883 ACTGGCTGTAGAGGTAGTACA 57.266 47.619 2.06 0.00 0.00 2.90
259 264 4.252570 ACTGGCTGTAGAGGTAGTACAT 57.747 45.455 2.06 0.00 30.07 2.29
260 265 3.954904 ACTGGCTGTAGAGGTAGTACATG 59.045 47.826 2.06 0.00 30.07 3.21
261 266 3.954904 CTGGCTGTAGAGGTAGTACATGT 59.045 47.826 2.69 2.69 30.07 3.21
262 267 5.120054 TGGCTGTAGAGGTAGTACATGTA 57.880 43.478 0.08 0.08 30.07 2.29
263 268 5.131067 TGGCTGTAGAGGTAGTACATGTAG 58.869 45.833 5.62 0.00 30.07 2.74
264 269 4.519730 GGCTGTAGAGGTAGTACATGTAGG 59.480 50.000 5.62 0.00 30.07 3.18
265 270 4.519730 GCTGTAGAGGTAGTACATGTAGGG 59.480 50.000 5.62 0.00 30.07 3.53
266 271 4.467769 TGTAGAGGTAGTACATGTAGGGC 58.532 47.826 5.62 0.00 0.00 5.19
267 272 2.960163 AGAGGTAGTACATGTAGGGCC 58.040 52.381 5.62 8.44 0.00 5.80
268 273 1.969208 GAGGTAGTACATGTAGGGCCC 59.031 57.143 16.46 16.46 0.00 5.80
269 274 1.054231 GGTAGTACATGTAGGGCCCC 58.946 60.000 21.43 4.15 0.00 5.80
270 275 1.414099 GGTAGTACATGTAGGGCCCCT 60.414 57.143 21.43 7.84 37.71 4.79
271 276 1.692519 GTAGTACATGTAGGGCCCCTG 59.307 57.143 21.43 13.94 34.61 4.45
272 277 0.341961 AGTACATGTAGGGCCCCTGA 59.658 55.000 21.43 1.43 34.61 3.86
273 278 1.209621 GTACATGTAGGGCCCCTGAA 58.790 55.000 21.43 1.46 34.61 3.02
274 279 1.141053 GTACATGTAGGGCCCCTGAAG 59.859 57.143 21.43 9.08 34.61 3.02
275 280 1.152881 CATGTAGGGCCCCTGAAGC 60.153 63.158 21.43 2.81 34.61 3.86
283 288 4.785453 CCCCTGAAGCCAGTCGCC 62.785 72.222 0.00 0.00 38.74 5.54
299 304 3.376078 CCGGCTGCAGCAACCAAT 61.376 61.111 37.63 0.00 44.36 3.16
300 305 2.180017 CGGCTGCAGCAACCAATC 59.820 61.111 37.63 18.73 44.36 2.67
301 306 2.575461 GGCTGCAGCAACCAATCC 59.425 61.111 37.63 15.84 44.36 3.01
302 307 2.180017 GCTGCAGCAACCAATCCG 59.820 61.111 33.36 0.00 41.59 4.18
303 308 2.334946 GCTGCAGCAACCAATCCGA 61.335 57.895 33.36 0.00 41.59 4.55
304 309 1.865788 GCTGCAGCAACCAATCCGAA 61.866 55.000 33.36 0.00 41.59 4.30
305 310 0.597568 CTGCAGCAACCAATCCGAAA 59.402 50.000 0.00 0.00 0.00 3.46
306 311 1.203052 CTGCAGCAACCAATCCGAAAT 59.797 47.619 0.00 0.00 0.00 2.17
307 312 1.202114 TGCAGCAACCAATCCGAAATC 59.798 47.619 0.00 0.00 0.00 2.17
308 313 1.202114 GCAGCAACCAATCCGAAATCA 59.798 47.619 0.00 0.00 0.00 2.57
309 314 2.733227 GCAGCAACCAATCCGAAATCAG 60.733 50.000 0.00 0.00 0.00 2.90
310 315 2.489329 CAGCAACCAATCCGAAATCAGT 59.511 45.455 0.00 0.00 0.00 3.41
311 316 3.057315 CAGCAACCAATCCGAAATCAGTT 60.057 43.478 0.00 0.00 0.00 3.16
312 317 3.057315 AGCAACCAATCCGAAATCAGTTG 60.057 43.478 0.00 0.00 36.94 3.16
313 318 3.057596 GCAACCAATCCGAAATCAGTTGA 60.058 43.478 0.00 0.00 36.16 3.18
314 319 4.726416 CAACCAATCCGAAATCAGTTGAG 58.274 43.478 0.00 0.00 36.16 3.02
315 320 3.347216 ACCAATCCGAAATCAGTTGAGG 58.653 45.455 0.00 0.00 0.00 3.86
316 321 2.098117 CCAATCCGAAATCAGTTGAGGC 59.902 50.000 0.00 0.00 0.00 4.70
317 322 2.749076 CAATCCGAAATCAGTTGAGGCA 59.251 45.455 0.00 0.00 0.00 4.75
318 323 2.787473 TCCGAAATCAGTTGAGGCAT 57.213 45.000 0.00 0.00 0.00 4.40
319 324 3.904800 TCCGAAATCAGTTGAGGCATA 57.095 42.857 0.00 0.00 0.00 3.14
320 325 3.531538 TCCGAAATCAGTTGAGGCATAC 58.468 45.455 0.00 0.00 0.00 2.39
321 326 3.055458 TCCGAAATCAGTTGAGGCATACA 60.055 43.478 0.00 0.00 0.00 2.29
322 327 3.879295 CCGAAATCAGTTGAGGCATACAT 59.121 43.478 0.00 0.00 0.00 2.29
323 328 5.056480 CCGAAATCAGTTGAGGCATACATA 58.944 41.667 0.00 0.00 0.00 2.29
324 329 5.702670 CCGAAATCAGTTGAGGCATACATAT 59.297 40.000 0.00 0.00 0.00 1.78
325 330 6.347969 CCGAAATCAGTTGAGGCATACATATG 60.348 42.308 0.00 0.00 36.78 1.78
338 343 5.934935 CATACATATGCAGCACATCTCAA 57.065 39.130 0.00 0.00 40.38 3.02
339 344 5.928153 CATACATATGCAGCACATCTCAAG 58.072 41.667 0.00 0.00 40.38 3.02
340 345 4.146745 ACATATGCAGCACATCTCAAGA 57.853 40.909 0.00 0.00 40.38 3.02
341 346 4.127907 ACATATGCAGCACATCTCAAGAG 58.872 43.478 0.00 0.00 40.38 2.85
342 347 4.141779 ACATATGCAGCACATCTCAAGAGA 60.142 41.667 0.00 1.74 40.38 3.10
343 348 2.845363 TGCAGCACATCTCAAGAGAA 57.155 45.000 3.59 0.00 41.36 2.87
344 349 2.696506 TGCAGCACATCTCAAGAGAAG 58.303 47.619 3.59 2.25 41.36 2.85
345 350 2.301009 TGCAGCACATCTCAAGAGAAGA 59.699 45.455 9.08 0.00 41.36 2.87
346 351 2.672381 GCAGCACATCTCAAGAGAAGAC 59.328 50.000 9.08 1.75 41.36 3.01
347 352 3.863780 GCAGCACATCTCAAGAGAAGACA 60.864 47.826 9.08 0.00 41.36 3.41
348 353 4.313282 CAGCACATCTCAAGAGAAGACAA 58.687 43.478 9.08 0.00 41.36 3.18
349 354 4.389382 CAGCACATCTCAAGAGAAGACAAG 59.611 45.833 9.08 0.00 41.36 3.16
350 355 4.282957 AGCACATCTCAAGAGAAGACAAGA 59.717 41.667 9.08 0.00 41.36 3.02
351 356 4.388469 GCACATCTCAAGAGAAGACAAGAC 59.612 45.833 9.08 0.00 41.36 3.01
352 357 5.536260 CACATCTCAAGAGAAGACAAGACA 58.464 41.667 9.08 0.00 41.36 3.41
353 358 5.987953 CACATCTCAAGAGAAGACAAGACAA 59.012 40.000 9.08 0.00 41.36 3.18
354 359 6.481313 CACATCTCAAGAGAAGACAAGACAAA 59.519 38.462 9.08 0.00 41.36 2.83
355 360 7.172875 CACATCTCAAGAGAAGACAAGACAAAT 59.827 37.037 9.08 0.00 41.36 2.32
356 361 7.718753 ACATCTCAAGAGAAGACAAGACAAATT 59.281 33.333 9.08 0.00 41.36 1.82
357 362 7.721286 TCTCAAGAGAAGACAAGACAAATTC 57.279 36.000 0.00 0.00 33.91 2.17
358 363 7.275183 TCTCAAGAGAAGACAAGACAAATTCA 58.725 34.615 0.00 0.00 33.91 2.57
359 364 7.440556 TCTCAAGAGAAGACAAGACAAATTCAG 59.559 37.037 0.00 0.00 33.91 3.02
360 365 7.275183 TCAAGAGAAGACAAGACAAATTCAGA 58.725 34.615 0.00 0.00 0.00 3.27
361 366 7.770433 TCAAGAGAAGACAAGACAAATTCAGAA 59.230 33.333 0.00 0.00 0.00 3.02
362 367 8.400947 CAAGAGAAGACAAGACAAATTCAGAAA 58.599 33.333 0.00 0.00 0.00 2.52
363 368 8.152309 AGAGAAGACAAGACAAATTCAGAAAG 57.848 34.615 0.00 0.00 0.00 2.62
364 369 7.989741 AGAGAAGACAAGACAAATTCAGAAAGA 59.010 33.333 0.00 0.00 0.00 2.52
365 370 8.511604 AGAAGACAAGACAAATTCAGAAAGAA 57.488 30.769 0.00 0.00 41.28 2.52
366 371 8.960591 AGAAGACAAGACAAATTCAGAAAGAAA 58.039 29.630 0.00 0.00 40.22 2.52
367 372 9.741647 GAAGACAAGACAAATTCAGAAAGAAAT 57.258 29.630 0.00 0.00 40.22 2.17
368 373 9.741647 AAGACAAGACAAATTCAGAAAGAAATC 57.258 29.630 0.00 0.00 40.22 2.17
369 374 8.072567 AGACAAGACAAATTCAGAAAGAAATCG 58.927 33.333 0.00 0.00 40.22 3.34
370 375 7.707104 ACAAGACAAATTCAGAAAGAAATCGT 58.293 30.769 0.00 0.00 40.22 3.73
371 376 8.190784 ACAAGACAAATTCAGAAAGAAATCGTT 58.809 29.630 0.00 0.00 40.22 3.85
372 377 8.685536 CAAGACAAATTCAGAAAGAAATCGTTC 58.314 33.333 1.49 1.49 40.22 3.95
373 378 7.930217 AGACAAATTCAGAAAGAAATCGTTCA 58.070 30.769 10.85 0.00 40.22 3.18
374 379 8.571336 AGACAAATTCAGAAAGAAATCGTTCAT 58.429 29.630 10.85 0.00 40.22 2.57
375 380 9.825972 GACAAATTCAGAAAGAAATCGTTCATA 57.174 29.630 10.85 0.00 40.22 2.15
376 381 9.612620 ACAAATTCAGAAAGAAATCGTTCATAC 57.387 29.630 10.85 0.00 40.22 2.39
377 382 9.611284 CAAATTCAGAAAGAAATCGTTCATACA 57.389 29.630 10.85 0.00 40.22 2.29
378 383 9.612620 AAATTCAGAAAGAAATCGTTCATACAC 57.387 29.630 10.85 0.00 40.22 2.90
379 384 7.722795 TTCAGAAAGAAATCGTTCATACACA 57.277 32.000 10.85 0.00 36.92 3.72
380 385 7.905604 TCAGAAAGAAATCGTTCATACACAT 57.094 32.000 10.85 0.00 36.92 3.21
381 386 7.963981 TCAGAAAGAAATCGTTCATACACATC 58.036 34.615 10.85 0.00 36.92 3.06
382 387 7.602265 TCAGAAAGAAATCGTTCATACACATCA 59.398 33.333 10.85 0.00 36.92 3.07
383 388 8.393366 CAGAAAGAAATCGTTCATACACATCAT 58.607 33.333 10.85 0.00 36.92 2.45
384 389 8.950210 AGAAAGAAATCGTTCATACACATCATT 58.050 29.630 10.85 0.00 36.92 2.57
387 392 8.370493 AGAAATCGTTCATACACATCATTAGG 57.630 34.615 0.00 0.00 36.09 2.69
388 393 7.442364 AGAAATCGTTCATACACATCATTAGGG 59.558 37.037 0.00 0.00 36.09 3.53
389 394 5.862678 TCGTTCATACACATCATTAGGGA 57.137 39.130 0.00 0.00 0.00 4.20
390 395 5.842907 TCGTTCATACACATCATTAGGGAG 58.157 41.667 0.00 0.00 0.00 4.30
391 396 5.362717 TCGTTCATACACATCATTAGGGAGT 59.637 40.000 0.00 0.00 0.00 3.85
392 397 6.548251 TCGTTCATACACATCATTAGGGAGTA 59.452 38.462 0.00 0.00 0.00 2.59
393 398 7.232737 TCGTTCATACACATCATTAGGGAGTAT 59.767 37.037 0.00 0.00 0.00 2.12
394 399 8.520351 CGTTCATACACATCATTAGGGAGTATA 58.480 37.037 0.00 0.00 0.00 1.47
395 400 9.640963 GTTCATACACATCATTAGGGAGTATAC 57.359 37.037 0.00 0.00 0.00 1.47
396 401 8.362464 TCATACACATCATTAGGGAGTATACC 57.638 38.462 0.00 0.00 0.00 2.73
397 402 7.953493 TCATACACATCATTAGGGAGTATACCA 59.047 37.037 0.00 0.00 0.00 3.25
398 403 6.672266 ACACATCATTAGGGAGTATACCAG 57.328 41.667 0.00 0.00 0.00 4.00
399 404 5.544176 ACACATCATTAGGGAGTATACCAGG 59.456 44.000 0.00 0.00 0.00 4.45
400 405 5.780282 CACATCATTAGGGAGTATACCAGGA 59.220 44.000 0.00 0.00 0.00 3.86
401 406 5.780793 ACATCATTAGGGAGTATACCAGGAC 59.219 44.000 0.00 0.00 0.00 3.85
402 407 4.404640 TCATTAGGGAGTATACCAGGACG 58.595 47.826 0.00 0.00 0.00 4.79
403 408 3.959495 TTAGGGAGTATACCAGGACGT 57.041 47.619 0.00 0.00 0.00 4.34
404 409 5.073554 TCATTAGGGAGTATACCAGGACGTA 59.926 44.000 0.00 0.00 0.00 3.57
405 410 3.505480 AGGGAGTATACCAGGACGTAG 57.495 52.381 0.00 0.00 0.00 3.51
420 425 2.132762 ACGTAGTTGTTCTTGAAGGCG 58.867 47.619 0.00 0.00 37.78 5.52
421 426 2.132762 CGTAGTTGTTCTTGAAGGCGT 58.867 47.619 0.00 0.00 0.00 5.68
422 427 2.542595 CGTAGTTGTTCTTGAAGGCGTT 59.457 45.455 0.00 0.00 0.00 4.84
423 428 3.603857 CGTAGTTGTTCTTGAAGGCGTTG 60.604 47.826 0.00 0.00 0.00 4.10
424 429 2.639065 AGTTGTTCTTGAAGGCGTTGA 58.361 42.857 0.00 0.00 0.00 3.18
425 430 3.013921 AGTTGTTCTTGAAGGCGTTGAA 58.986 40.909 0.00 0.00 0.00 2.69
426 431 3.632145 AGTTGTTCTTGAAGGCGTTGAAT 59.368 39.130 0.00 0.00 0.00 2.57
427 432 3.624326 TGTTCTTGAAGGCGTTGAATG 57.376 42.857 0.00 0.00 0.00 2.67
428 433 2.287547 TGTTCTTGAAGGCGTTGAATGC 60.288 45.455 0.00 0.00 0.00 3.56
429 434 0.516877 TCTTGAAGGCGTTGAATGCG 59.483 50.000 2.97 0.00 0.00 4.73
430 435 0.454957 CTTGAAGGCGTTGAATGCGG 60.455 55.000 2.97 0.00 0.00 5.69
431 436 1.169661 TTGAAGGCGTTGAATGCGGT 61.170 50.000 2.97 0.00 0.00 5.68
432 437 1.154225 GAAGGCGTTGAATGCGGTG 60.154 57.895 2.97 0.00 0.00 4.94
433 438 2.527547 GAAGGCGTTGAATGCGGTGG 62.528 60.000 2.97 0.00 0.00 4.61
434 439 4.114997 GGCGTTGAATGCGGTGGG 62.115 66.667 2.97 0.00 0.00 4.61
435 440 4.114997 GCGTTGAATGCGGTGGGG 62.115 66.667 0.00 0.00 0.00 4.96
436 441 3.439540 CGTTGAATGCGGTGGGGG 61.440 66.667 0.00 0.00 0.00 5.40
437 442 2.282887 GTTGAATGCGGTGGGGGT 60.283 61.111 0.00 0.00 0.00 4.95
438 443 1.906333 GTTGAATGCGGTGGGGGTT 60.906 57.895 0.00 0.00 0.00 4.11
439 444 1.905843 TTGAATGCGGTGGGGGTTG 60.906 57.895 0.00 0.00 0.00 3.77
440 445 3.758931 GAATGCGGTGGGGGTTGC 61.759 66.667 0.00 0.00 0.00 4.17
453 458 4.072088 GTTGCGACGCGGTCCTTG 62.072 66.667 16.14 0.00 0.00 3.61
462 467 3.121030 CGGTCCTTGCCGCTCTTG 61.121 66.667 0.00 0.00 45.47 3.02
463 468 3.435186 GGTCCTTGCCGCTCTTGC 61.435 66.667 0.00 0.00 0.00 4.01
464 469 3.435186 GTCCTTGCCGCTCTTGCC 61.435 66.667 0.00 0.00 35.36 4.52
465 470 4.722700 TCCTTGCCGCTCTTGCCC 62.723 66.667 0.00 0.00 35.36 5.36
467 472 3.437795 CTTGCCGCTCTTGCCCAG 61.438 66.667 0.00 0.00 35.36 4.45
472 477 4.399395 CGCTCTTGCCCAGCTCCA 62.399 66.667 0.00 0.00 34.45 3.86
473 478 2.438075 GCTCTTGCCCAGCTCCAG 60.438 66.667 0.00 0.00 33.75 3.86
474 479 2.438075 CTCTTGCCCAGCTCCAGC 60.438 66.667 0.00 0.00 42.49 4.85
475 480 3.991725 CTCTTGCCCAGCTCCAGCC 62.992 68.421 0.00 0.00 43.38 4.85
476 481 4.044439 CTTGCCCAGCTCCAGCCT 62.044 66.667 0.00 0.00 43.38 4.58
477 482 4.355720 TTGCCCAGCTCCAGCCTG 62.356 66.667 0.00 0.00 43.38 4.85
485 490 4.729918 CTCCAGCCTGCCACCACC 62.730 72.222 0.00 0.00 0.00 4.61
508 513 4.722700 CAGGCCCCCGAACACCAG 62.723 72.222 0.00 0.00 0.00 4.00
511 516 3.324108 GCCCCCGAACACCAGGTA 61.324 66.667 0.00 0.00 0.00 3.08
512 517 2.987125 CCCCCGAACACCAGGTAG 59.013 66.667 0.00 0.00 0.00 3.18
513 518 1.916777 CCCCCGAACACCAGGTAGT 60.917 63.158 0.00 0.00 0.00 2.73
514 519 0.615544 CCCCCGAACACCAGGTAGTA 60.616 60.000 0.00 0.00 0.00 1.82
515 520 0.822164 CCCCGAACACCAGGTAGTAG 59.178 60.000 0.00 0.00 0.00 2.57
516 521 1.617804 CCCCGAACACCAGGTAGTAGA 60.618 57.143 0.00 0.00 0.00 2.59
517 522 2.173519 CCCGAACACCAGGTAGTAGAA 58.826 52.381 0.00 0.00 0.00 2.10
518 523 2.564062 CCCGAACACCAGGTAGTAGAAA 59.436 50.000 0.00 0.00 0.00 2.52
519 524 3.007182 CCCGAACACCAGGTAGTAGAAAA 59.993 47.826 0.00 0.00 0.00 2.29
520 525 4.323257 CCCGAACACCAGGTAGTAGAAAAT 60.323 45.833 0.00 0.00 0.00 1.82
521 526 4.868734 CCGAACACCAGGTAGTAGAAAATC 59.131 45.833 0.00 0.00 0.00 2.17
522 527 5.337330 CCGAACACCAGGTAGTAGAAAATCT 60.337 44.000 0.00 0.00 0.00 2.40
523 528 5.805994 CGAACACCAGGTAGTAGAAAATCTC 59.194 44.000 0.00 0.00 0.00 2.75
524 529 5.678955 ACACCAGGTAGTAGAAAATCTCC 57.321 43.478 0.00 0.00 0.00 3.71
525 530 5.091552 ACACCAGGTAGTAGAAAATCTCCA 58.908 41.667 0.00 0.00 0.00 3.86
526 531 5.726793 ACACCAGGTAGTAGAAAATCTCCAT 59.273 40.000 0.00 0.00 0.00 3.41
527 532 6.127026 ACACCAGGTAGTAGAAAATCTCCATC 60.127 42.308 0.00 0.00 0.00 3.51
528 533 6.098982 CACCAGGTAGTAGAAAATCTCCATCT 59.901 42.308 0.00 0.00 0.00 2.90
529 534 6.674419 ACCAGGTAGTAGAAAATCTCCATCTT 59.326 38.462 0.00 0.00 0.00 2.40
530 535 7.147637 ACCAGGTAGTAGAAAATCTCCATCTTC 60.148 40.741 0.00 0.00 0.00 2.87
531 536 7.213678 CAGGTAGTAGAAAATCTCCATCTTCC 58.786 42.308 0.00 0.00 0.00 3.46
532 537 6.327887 AGGTAGTAGAAAATCTCCATCTTCCC 59.672 42.308 0.00 0.00 0.00 3.97
533 538 5.638530 AGTAGAAAATCTCCATCTTCCCC 57.361 43.478 0.00 0.00 0.00 4.81
534 539 3.961484 AGAAAATCTCCATCTTCCCCC 57.039 47.619 0.00 0.00 0.00 5.40
535 540 3.478991 AGAAAATCTCCATCTTCCCCCT 58.521 45.455 0.00 0.00 0.00 4.79
536 541 3.203934 AGAAAATCTCCATCTTCCCCCTG 59.796 47.826 0.00 0.00 0.00 4.45
537 542 0.849417 AATCTCCATCTTCCCCCTGC 59.151 55.000 0.00 0.00 0.00 4.85
538 543 1.414061 ATCTCCATCTTCCCCCTGCG 61.414 60.000 0.00 0.00 0.00 5.18
539 544 3.764160 CTCCATCTTCCCCCTGCGC 62.764 68.421 0.00 0.00 0.00 6.09
570 575 3.047877 CCGCCGGGACAGACAAAC 61.048 66.667 2.18 0.00 34.06 2.93
571 576 2.280524 CGCCGGGACAGACAAACA 60.281 61.111 2.18 0.00 0.00 2.83
572 577 2.317609 CGCCGGGACAGACAAACAG 61.318 63.158 2.18 0.00 0.00 3.16
573 578 1.070786 GCCGGGACAGACAAACAGA 59.929 57.895 2.18 0.00 0.00 3.41
574 579 0.951040 GCCGGGACAGACAAACAGAG 60.951 60.000 2.18 0.00 0.00 3.35
575 580 0.679505 CCGGGACAGACAAACAGAGA 59.320 55.000 0.00 0.00 0.00 3.10
576 581 1.337260 CCGGGACAGACAAACAGAGAG 60.337 57.143 0.00 0.00 0.00 3.20
577 582 1.613925 CGGGACAGACAAACAGAGAGA 59.386 52.381 0.00 0.00 0.00 3.10
578 583 2.608261 CGGGACAGACAAACAGAGAGAC 60.608 54.545 0.00 0.00 0.00 3.36
579 584 2.365617 GGGACAGACAAACAGAGAGACA 59.634 50.000 0.00 0.00 0.00 3.41
580 585 3.553922 GGGACAGACAAACAGAGAGACAG 60.554 52.174 0.00 0.00 0.00 3.51
581 586 3.319405 GGACAGACAAACAGAGAGACAGA 59.681 47.826 0.00 0.00 0.00 3.41
582 587 4.202161 GGACAGACAAACAGAGAGACAGAA 60.202 45.833 0.00 0.00 0.00 3.02
583 588 4.942852 ACAGACAAACAGAGAGACAGAAG 58.057 43.478 0.00 0.00 0.00 2.85
584 589 4.646945 ACAGACAAACAGAGAGACAGAAGA 59.353 41.667 0.00 0.00 0.00 2.87
585 590 5.127845 ACAGACAAACAGAGAGACAGAAGAA 59.872 40.000 0.00 0.00 0.00 2.52
586 591 5.691305 CAGACAAACAGAGAGACAGAAGAAG 59.309 44.000 0.00 0.00 0.00 2.85
587 592 4.954875 ACAAACAGAGAGACAGAAGAAGG 58.045 43.478 0.00 0.00 0.00 3.46
588 593 4.651503 ACAAACAGAGAGACAGAAGAAGGA 59.348 41.667 0.00 0.00 0.00 3.36
589 594 5.306678 ACAAACAGAGAGACAGAAGAAGGAT 59.693 40.000 0.00 0.00 0.00 3.24
590 595 5.404466 AACAGAGAGACAGAAGAAGGATG 57.596 43.478 0.00 0.00 0.00 3.51
591 596 3.768757 ACAGAGAGACAGAAGAAGGATGG 59.231 47.826 0.00 0.00 0.00 3.51
592 597 3.132646 CAGAGAGACAGAAGAAGGATGGG 59.867 52.174 0.00 0.00 0.00 4.00
593 598 3.012274 AGAGAGACAGAAGAAGGATGGGA 59.988 47.826 0.00 0.00 0.00 4.37
594 599 3.966665 GAGAGACAGAAGAAGGATGGGAT 59.033 47.826 0.00 0.00 0.00 3.85
595 600 3.966665 AGAGACAGAAGAAGGATGGGATC 59.033 47.826 0.00 0.00 0.00 3.36
596 601 2.697751 AGACAGAAGAAGGATGGGATCG 59.302 50.000 0.00 0.00 0.00 3.69
597 602 1.765314 ACAGAAGAAGGATGGGATCGG 59.235 52.381 0.00 0.00 0.00 4.18
598 603 1.071385 CAGAAGAAGGATGGGATCGGG 59.929 57.143 0.00 0.00 0.00 5.14
599 604 1.132500 GAAGAAGGATGGGATCGGGT 58.868 55.000 0.00 0.00 0.00 5.28
600 605 1.490910 GAAGAAGGATGGGATCGGGTT 59.509 52.381 0.00 0.00 0.00 4.11
601 606 0.839946 AGAAGGATGGGATCGGGTTG 59.160 55.000 0.00 0.00 0.00 3.77
602 607 0.546598 GAAGGATGGGATCGGGTTGT 59.453 55.000 0.00 0.00 0.00 3.32
603 608 0.255890 AAGGATGGGATCGGGTTGTG 59.744 55.000 0.00 0.00 0.00 3.33
604 609 1.152963 GGATGGGATCGGGTTGTGG 60.153 63.158 0.00 0.00 0.00 4.17
605 610 1.152963 GATGGGATCGGGTTGTGGG 60.153 63.158 0.00 0.00 0.00 4.61
606 611 3.358932 ATGGGATCGGGTTGTGGGC 62.359 63.158 0.00 0.00 0.00 5.36
609 614 4.778143 GATCGGGTTGTGGGCGCT 62.778 66.667 7.64 0.00 0.00 5.92
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 6.154363 TGAATCTGACTGAAAAACAAAACCCT 59.846 34.615 0.00 0.00 0.00 4.34
43 44 6.337356 TGAATCTGACTGAAAAACAAAACCC 58.663 36.000 0.00 0.00 0.00 4.11
44 45 8.424274 AATGAATCTGACTGAAAAACAAAACC 57.576 30.769 0.00 0.00 0.00 3.27
45 46 9.086336 TGAATGAATCTGACTGAAAAACAAAAC 57.914 29.630 0.00 0.00 0.00 2.43
47 48 7.922278 CCTGAATGAATCTGACTGAAAAACAAA 59.078 33.333 0.00 0.00 0.00 2.83
48 49 7.068593 ACCTGAATGAATCTGACTGAAAAACAA 59.931 33.333 0.00 0.00 0.00 2.83
49 50 6.547141 ACCTGAATGAATCTGACTGAAAAACA 59.453 34.615 0.00 0.00 0.00 2.83
50 51 6.974965 ACCTGAATGAATCTGACTGAAAAAC 58.025 36.000 0.00 0.00 0.00 2.43
51 52 8.690203 TTACCTGAATGAATCTGACTGAAAAA 57.310 30.769 0.00 0.00 0.00 1.94
52 53 7.094634 GCTTACCTGAATGAATCTGACTGAAAA 60.095 37.037 0.00 0.00 0.00 2.29
53 54 6.372659 GCTTACCTGAATGAATCTGACTGAAA 59.627 38.462 0.00 0.00 0.00 2.69
56 57 5.181009 TGCTTACCTGAATGAATCTGACTG 58.819 41.667 0.00 0.00 0.00 3.51
58 59 5.448360 GCTTGCTTACCTGAATGAATCTGAC 60.448 44.000 0.00 0.00 0.00 3.51
59 60 4.637534 GCTTGCTTACCTGAATGAATCTGA 59.362 41.667 0.00 0.00 0.00 3.27
61 62 4.592942 TGCTTGCTTACCTGAATGAATCT 58.407 39.130 0.00 0.00 0.00 2.40
62 63 4.970662 TGCTTGCTTACCTGAATGAATC 57.029 40.909 0.00 0.00 0.00 2.52
64 65 4.766373 TGATTGCTTGCTTACCTGAATGAA 59.234 37.500 0.00 0.00 0.00 2.57
66 67 4.707030 TGATTGCTTGCTTACCTGAATG 57.293 40.909 0.00 0.00 0.00 2.67
67 68 5.163478 GGATTGATTGCTTGCTTACCTGAAT 60.163 40.000 0.00 0.00 0.00 2.57
68 69 4.158394 GGATTGATTGCTTGCTTACCTGAA 59.842 41.667 0.00 0.00 0.00 3.02
70 71 3.181483 GGGATTGATTGCTTGCTTACCTG 60.181 47.826 0.00 0.00 0.00 4.00
73 74 4.454728 TTGGGATTGATTGCTTGCTTAC 57.545 40.909 0.00 0.00 0.00 2.34
77 78 2.484241 GGGATTGGGATTGATTGCTTGC 60.484 50.000 0.00 0.00 0.00 4.01
82 83 3.968649 TCCATTGGGATTGGGATTGATTG 59.031 43.478 2.09 0.00 38.64 2.67
83 84 4.283798 TCCATTGGGATTGGGATTGATT 57.716 40.909 2.09 0.00 38.64 2.57
84 85 3.997726 TCCATTGGGATTGGGATTGAT 57.002 42.857 2.09 0.00 38.64 2.57
86 87 4.019501 TGTTTTCCATTGGGATTGGGATTG 60.020 41.667 2.09 0.00 44.48 2.67
88 89 3.800924 TGTTTTCCATTGGGATTGGGAT 58.199 40.909 2.09 0.00 44.48 3.85
89 90 3.266477 TGTTTTCCATTGGGATTGGGA 57.734 42.857 2.09 0.00 44.48 4.37
90 91 3.582208 TCTTGTTTTCCATTGGGATTGGG 59.418 43.478 2.09 0.00 44.48 4.12
92 93 6.100404 TCTTCTTGTTTTCCATTGGGATTG 57.900 37.500 2.09 0.00 44.48 2.67
93 94 6.554605 TCTTCTTCTTGTTTTCCATTGGGATT 59.445 34.615 2.09 0.00 44.48 3.01
95 96 5.454062 TCTTCTTCTTGTTTTCCATTGGGA 58.546 37.500 2.09 0.00 43.03 4.37
96 97 5.789643 TCTTCTTCTTGTTTTCCATTGGG 57.210 39.130 2.09 0.00 0.00 4.12
97 98 7.042797 TCTTCTTCTTCTTGTTTTCCATTGG 57.957 36.000 0.00 0.00 0.00 3.16
105 106 9.454859 TCTTTCTTCTTCTTCTTCTTCTTGTTT 57.545 29.630 0.00 0.00 0.00 2.83
106 107 9.454859 TTCTTTCTTCTTCTTCTTCTTCTTGTT 57.545 29.630 0.00 0.00 0.00 2.83
107 108 9.108284 CTTCTTTCTTCTTCTTCTTCTTCTTGT 57.892 33.333 0.00 0.00 0.00 3.16
108 109 8.069574 GCTTCTTTCTTCTTCTTCTTCTTCTTG 58.930 37.037 0.00 0.00 0.00 3.02
109 110 7.772757 TGCTTCTTTCTTCTTCTTCTTCTTCTT 59.227 33.333 0.00 0.00 0.00 2.52
110 111 7.226523 GTGCTTCTTTCTTCTTCTTCTTCTTCT 59.773 37.037 0.00 0.00 0.00 2.85
111 112 7.011857 TGTGCTTCTTTCTTCTTCTTCTTCTTC 59.988 37.037 0.00 0.00 0.00 2.87
112 113 6.825721 TGTGCTTCTTTCTTCTTCTTCTTCTT 59.174 34.615 0.00 0.00 0.00 2.52
134 135 2.167281 ACTAGCAGACAGGCAGTATGTG 59.833 50.000 6.53 0.82 41.47 3.21
158 163 2.022195 CTCTTCGGAACCATCGTAGGA 58.978 52.381 2.98 0.00 0.00 2.94
170 175 0.105593 GCTCATCCATGCTCTTCGGA 59.894 55.000 0.00 0.00 0.00 4.55
202 207 4.514577 ACATCGGCCGCCTCTTCG 62.515 66.667 23.51 5.48 0.00 3.79
223 228 0.389426 CCAGTACGGGTTCGACAAGG 60.389 60.000 3.54 0.00 40.11 3.61
224 229 1.012486 GCCAGTACGGGTTCGACAAG 61.012 60.000 13.86 0.00 40.11 3.16
225 230 1.005867 GCCAGTACGGGTTCGACAA 60.006 57.895 13.86 0.00 40.11 3.18
226 231 1.904865 AGCCAGTACGGGTTCGACA 60.905 57.895 13.86 0.00 45.83 4.35
227 232 1.445582 CAGCCAGTACGGGTTCGAC 60.446 63.158 13.86 0.00 45.83 4.20
228 233 0.608856 TACAGCCAGTACGGGTTCGA 60.609 55.000 13.86 0.00 45.83 3.71
229 234 0.179145 CTACAGCCAGTACGGGTTCG 60.179 60.000 13.86 5.11 45.83 3.95
230 235 1.134560 CTCTACAGCCAGTACGGGTTC 59.865 57.143 13.86 0.00 45.83 3.62
231 236 1.183549 CTCTACAGCCAGTACGGGTT 58.816 55.000 13.86 4.57 45.83 4.11
233 238 0.683504 ACCTCTACAGCCAGTACGGG 60.684 60.000 7.81 7.81 34.06 5.28
234 239 1.948145 CTACCTCTACAGCCAGTACGG 59.052 57.143 0.00 0.06 38.11 4.02
235 240 2.641305 ACTACCTCTACAGCCAGTACG 58.359 52.381 0.00 0.00 0.00 3.67
236 241 4.521146 TGTACTACCTCTACAGCCAGTAC 58.479 47.826 0.00 0.00 36.66 2.73
237 242 4.849813 TGTACTACCTCTACAGCCAGTA 57.150 45.455 0.00 0.00 0.00 2.74
238 243 3.733883 TGTACTACCTCTACAGCCAGT 57.266 47.619 0.00 0.00 0.00 4.00
239 244 3.954904 ACATGTACTACCTCTACAGCCAG 59.045 47.826 0.00 0.00 0.00 4.85
240 245 3.977312 ACATGTACTACCTCTACAGCCA 58.023 45.455 0.00 0.00 0.00 4.75
241 246 4.519730 CCTACATGTACTACCTCTACAGCC 59.480 50.000 0.08 0.00 0.00 4.85
242 247 4.519730 CCCTACATGTACTACCTCTACAGC 59.480 50.000 0.08 0.00 0.00 4.40
243 248 4.519730 GCCCTACATGTACTACCTCTACAG 59.480 50.000 0.08 0.00 0.00 2.74
244 249 4.467769 GCCCTACATGTACTACCTCTACA 58.532 47.826 0.08 0.00 0.00 2.74
245 250 3.825585 GGCCCTACATGTACTACCTCTAC 59.174 52.174 0.08 0.00 0.00 2.59
246 251 3.181425 GGGCCCTACATGTACTACCTCTA 60.181 52.174 17.04 0.00 0.00 2.43
247 252 2.425975 GGGCCCTACATGTACTACCTCT 60.426 54.545 17.04 0.00 0.00 3.69
248 253 1.969208 GGGCCCTACATGTACTACCTC 59.031 57.143 17.04 0.00 0.00 3.85
249 254 1.414099 GGGGCCCTACATGTACTACCT 60.414 57.143 24.38 0.00 0.00 3.08
250 255 1.054231 GGGGCCCTACATGTACTACC 58.946 60.000 24.38 3.26 0.00 3.18
251 256 1.692519 CAGGGGCCCTACATGTACTAC 59.307 57.143 28.28 0.00 29.64 2.73
252 257 1.576757 TCAGGGGCCCTACATGTACTA 59.423 52.381 28.28 0.00 29.64 1.82
253 258 0.341961 TCAGGGGCCCTACATGTACT 59.658 55.000 28.28 4.06 29.64 2.73
254 259 1.141053 CTTCAGGGGCCCTACATGTAC 59.859 57.143 28.28 1.15 29.64 2.90
255 260 1.507140 CTTCAGGGGCCCTACATGTA 58.493 55.000 28.28 6.73 29.64 2.29
256 261 1.926426 GCTTCAGGGGCCCTACATGT 61.926 60.000 28.28 2.69 29.64 3.21
257 262 1.152881 GCTTCAGGGGCCCTACATG 60.153 63.158 28.28 14.69 29.64 3.21
258 263 2.386935 GGCTTCAGGGGCCCTACAT 61.387 63.158 28.28 0.00 43.49 2.29
259 264 3.015145 GGCTTCAGGGGCCCTACA 61.015 66.667 28.28 12.68 43.49 2.74
266 271 4.785453 GGCGACTGGCTTCAGGGG 62.785 72.222 0.00 0.00 42.60 4.79
282 287 3.346631 GATTGGTTGCTGCAGCCGG 62.347 63.158 34.64 0.00 37.56 6.13
283 288 2.180017 GATTGGTTGCTGCAGCCG 59.820 61.111 34.64 0.75 37.56 5.52
284 289 2.575461 GGATTGGTTGCTGCAGCC 59.425 61.111 34.64 26.26 41.18 4.85
285 290 1.865788 TTCGGATTGGTTGCTGCAGC 61.866 55.000 31.89 31.89 42.50 5.25
286 291 0.597568 TTTCGGATTGGTTGCTGCAG 59.402 50.000 10.11 10.11 0.00 4.41
287 292 1.202114 GATTTCGGATTGGTTGCTGCA 59.798 47.619 0.00 0.00 0.00 4.41
288 293 1.202114 TGATTTCGGATTGGTTGCTGC 59.798 47.619 0.00 0.00 0.00 5.25
289 294 2.489329 ACTGATTTCGGATTGGTTGCTG 59.511 45.455 0.00 0.00 0.00 4.41
290 295 2.795329 ACTGATTTCGGATTGGTTGCT 58.205 42.857 0.00 0.00 0.00 3.91
291 296 3.057596 TCAACTGATTTCGGATTGGTTGC 60.058 43.478 0.00 0.00 34.49 4.17
292 297 4.379813 CCTCAACTGATTTCGGATTGGTTG 60.380 45.833 0.00 0.00 35.40 3.77
293 298 3.758554 CCTCAACTGATTTCGGATTGGTT 59.241 43.478 0.00 0.00 0.00 3.67
294 299 3.347216 CCTCAACTGATTTCGGATTGGT 58.653 45.455 0.00 0.00 0.00 3.67
295 300 2.098117 GCCTCAACTGATTTCGGATTGG 59.902 50.000 0.00 0.00 0.00 3.16
296 301 2.749076 TGCCTCAACTGATTTCGGATTG 59.251 45.455 0.00 0.00 0.00 2.67
297 302 3.071874 TGCCTCAACTGATTTCGGATT 57.928 42.857 0.00 0.00 0.00 3.01
298 303 2.787473 TGCCTCAACTGATTTCGGAT 57.213 45.000 0.00 0.00 0.00 4.18
299 304 2.787473 ATGCCTCAACTGATTTCGGA 57.213 45.000 0.00 0.00 0.00 4.55
300 305 3.270027 TGTATGCCTCAACTGATTTCGG 58.730 45.455 0.00 0.00 0.00 4.30
301 306 6.596703 CATATGTATGCCTCAACTGATTTCG 58.403 40.000 0.00 0.00 0.00 3.46
316 321 5.699458 TCTTGAGATGTGCTGCATATGTATG 59.301 40.000 16.83 6.59 38.06 2.39
317 322 5.861727 TCTTGAGATGTGCTGCATATGTAT 58.138 37.500 16.83 2.57 38.06 2.29
318 323 5.069516 TCTCTTGAGATGTGCTGCATATGTA 59.930 40.000 16.83 0.00 38.06 2.29
319 324 4.127907 CTCTTGAGATGTGCTGCATATGT 58.872 43.478 16.83 12.72 38.06 2.29
320 325 4.377897 TCTCTTGAGATGTGCTGCATATG 58.622 43.478 16.83 0.00 38.06 1.78
321 326 4.684484 TCTCTTGAGATGTGCTGCATAT 57.316 40.909 11.86 11.86 38.06 1.78
322 327 4.161001 TCTTCTCTTGAGATGTGCTGCATA 59.839 41.667 5.27 2.74 38.06 3.14
323 328 3.055312 TCTTCTCTTGAGATGTGCTGCAT 60.055 43.478 5.27 0.00 41.24 3.96
324 329 2.301009 TCTTCTCTTGAGATGTGCTGCA 59.699 45.455 0.00 0.00 0.00 4.41
325 330 2.672381 GTCTTCTCTTGAGATGTGCTGC 59.328 50.000 11.55 0.00 0.00 5.25
326 331 3.922910 TGTCTTCTCTTGAGATGTGCTG 58.077 45.455 11.55 0.00 0.00 4.41
327 332 4.282957 TCTTGTCTTCTCTTGAGATGTGCT 59.717 41.667 11.55 0.00 0.00 4.40
328 333 4.388469 GTCTTGTCTTCTCTTGAGATGTGC 59.612 45.833 11.55 7.94 0.00 4.57
329 334 5.536260 TGTCTTGTCTTCTCTTGAGATGTG 58.464 41.667 11.55 2.83 0.00 3.21
330 335 5.798125 TGTCTTGTCTTCTCTTGAGATGT 57.202 39.130 11.55 0.00 0.00 3.06
331 336 7.670009 ATTTGTCTTGTCTTCTCTTGAGATG 57.330 36.000 0.82 4.41 0.00 2.90
332 337 7.935755 TGAATTTGTCTTGTCTTCTCTTGAGAT 59.064 33.333 0.82 0.00 0.00 2.75
333 338 7.275183 TGAATTTGTCTTGTCTTCTCTTGAGA 58.725 34.615 0.00 0.00 0.00 3.27
334 339 7.440556 TCTGAATTTGTCTTGTCTTCTCTTGAG 59.559 37.037 0.00 0.00 0.00 3.02
335 340 7.275183 TCTGAATTTGTCTTGTCTTCTCTTGA 58.725 34.615 0.00 0.00 0.00 3.02
336 341 7.488187 TCTGAATTTGTCTTGTCTTCTCTTG 57.512 36.000 0.00 0.00 0.00 3.02
337 342 8.511604 TTTCTGAATTTGTCTTGTCTTCTCTT 57.488 30.769 0.00 0.00 0.00 2.85
338 343 7.989741 TCTTTCTGAATTTGTCTTGTCTTCTCT 59.010 33.333 0.00 0.00 0.00 3.10
339 344 8.147642 TCTTTCTGAATTTGTCTTGTCTTCTC 57.852 34.615 0.00 0.00 0.00 2.87
340 345 8.511604 TTCTTTCTGAATTTGTCTTGTCTTCT 57.488 30.769 0.00 0.00 0.00 2.85
341 346 9.741647 ATTTCTTTCTGAATTTGTCTTGTCTTC 57.258 29.630 0.00 0.00 34.24 2.87
342 347 9.741647 GATTTCTTTCTGAATTTGTCTTGTCTT 57.258 29.630 0.00 0.00 34.24 3.01
343 348 8.072567 CGATTTCTTTCTGAATTTGTCTTGTCT 58.927 33.333 0.00 0.00 34.24 3.41
344 349 7.857885 ACGATTTCTTTCTGAATTTGTCTTGTC 59.142 33.333 0.00 0.00 30.86 3.18
345 350 7.707104 ACGATTTCTTTCTGAATTTGTCTTGT 58.293 30.769 0.00 0.00 30.86 3.16
346 351 8.566008 AACGATTTCTTTCTGAATTTGTCTTG 57.434 30.769 0.00 0.00 33.77 3.02
347 352 8.405531 TGAACGATTTCTTTCTGAATTTGTCTT 58.594 29.630 0.00 0.00 33.77 3.01
348 353 7.930217 TGAACGATTTCTTTCTGAATTTGTCT 58.070 30.769 0.00 0.00 33.77 3.41
349 354 8.733857 ATGAACGATTTCTTTCTGAATTTGTC 57.266 30.769 0.00 0.00 33.77 3.18
350 355 9.612620 GTATGAACGATTTCTTTCTGAATTTGT 57.387 29.630 0.00 0.00 35.39 2.83
351 356 9.611284 TGTATGAACGATTTCTTTCTGAATTTG 57.389 29.630 0.00 0.00 34.24 2.32
352 357 9.612620 GTGTATGAACGATTTCTTTCTGAATTT 57.387 29.630 0.00 0.00 34.24 1.82
353 358 8.783093 TGTGTATGAACGATTTCTTTCTGAATT 58.217 29.630 0.00 0.00 34.24 2.17
354 359 8.322906 TGTGTATGAACGATTTCTTTCTGAAT 57.677 30.769 0.00 0.00 34.24 2.57
355 360 7.722795 TGTGTATGAACGATTTCTTTCTGAA 57.277 32.000 0.00 0.00 32.36 3.02
356 361 7.602265 TGATGTGTATGAACGATTTCTTTCTGA 59.398 33.333 0.00 0.00 32.36 3.27
357 362 7.742151 TGATGTGTATGAACGATTTCTTTCTG 58.258 34.615 0.00 0.00 32.36 3.02
358 363 7.905604 TGATGTGTATGAACGATTTCTTTCT 57.094 32.000 0.00 0.00 32.36 2.52
361 366 8.830580 CCTAATGATGTGTATGAACGATTTCTT 58.169 33.333 0.00 0.00 32.36 2.52
362 367 7.442364 CCCTAATGATGTGTATGAACGATTTCT 59.558 37.037 0.00 0.00 32.36 2.52
363 368 7.441157 TCCCTAATGATGTGTATGAACGATTTC 59.559 37.037 0.00 0.00 0.00 2.17
364 369 7.279615 TCCCTAATGATGTGTATGAACGATTT 58.720 34.615 0.00 0.00 0.00 2.17
365 370 6.826668 TCCCTAATGATGTGTATGAACGATT 58.173 36.000 0.00 0.00 0.00 3.34
366 371 6.042093 ACTCCCTAATGATGTGTATGAACGAT 59.958 38.462 0.00 0.00 0.00 3.73
367 372 5.362717 ACTCCCTAATGATGTGTATGAACGA 59.637 40.000 0.00 0.00 0.00 3.85
368 373 5.601662 ACTCCCTAATGATGTGTATGAACG 58.398 41.667 0.00 0.00 0.00 3.95
369 374 9.640963 GTATACTCCCTAATGATGTGTATGAAC 57.359 37.037 0.00 0.00 0.00 3.18
370 375 8.812972 GGTATACTCCCTAATGATGTGTATGAA 58.187 37.037 2.25 0.00 0.00 2.57
371 376 7.953493 TGGTATACTCCCTAATGATGTGTATGA 59.047 37.037 2.25 0.00 0.00 2.15
372 377 8.134202 TGGTATACTCCCTAATGATGTGTATG 57.866 38.462 2.25 0.00 0.00 2.39
373 378 7.400339 CCTGGTATACTCCCTAATGATGTGTAT 59.600 40.741 2.25 0.00 0.00 2.29
374 379 6.724441 CCTGGTATACTCCCTAATGATGTGTA 59.276 42.308 2.25 0.00 0.00 2.90
375 380 5.544176 CCTGGTATACTCCCTAATGATGTGT 59.456 44.000 2.25 0.00 0.00 3.72
376 381 5.780282 TCCTGGTATACTCCCTAATGATGTG 59.220 44.000 2.25 0.00 0.00 3.21
377 382 5.780793 GTCCTGGTATACTCCCTAATGATGT 59.219 44.000 2.25 0.00 0.00 3.06
378 383 5.105716 CGTCCTGGTATACTCCCTAATGATG 60.106 48.000 2.25 0.00 0.00 3.07
379 384 5.017490 CGTCCTGGTATACTCCCTAATGAT 58.983 45.833 2.25 0.00 0.00 2.45
380 385 4.141088 ACGTCCTGGTATACTCCCTAATGA 60.141 45.833 2.25 0.00 0.00 2.57
381 386 4.150359 ACGTCCTGGTATACTCCCTAATG 58.850 47.826 2.25 0.00 0.00 1.90
382 387 4.466255 ACGTCCTGGTATACTCCCTAAT 57.534 45.455 2.25 0.00 0.00 1.73
383 388 3.959495 ACGTCCTGGTATACTCCCTAA 57.041 47.619 2.25 0.00 0.00 2.69
384 389 3.976654 ACTACGTCCTGGTATACTCCCTA 59.023 47.826 2.25 0.00 0.00 3.53
385 390 2.782341 ACTACGTCCTGGTATACTCCCT 59.218 50.000 2.25 0.00 0.00 4.20
386 391 3.220674 ACTACGTCCTGGTATACTCCC 57.779 52.381 2.25 0.00 0.00 4.30
387 392 3.950395 ACAACTACGTCCTGGTATACTCC 59.050 47.826 2.25 0.00 0.00 3.85
388 393 5.356470 AGAACAACTACGTCCTGGTATACTC 59.644 44.000 2.25 0.00 0.00 2.59
389 394 5.259632 AGAACAACTACGTCCTGGTATACT 58.740 41.667 2.25 0.00 0.00 2.12
390 395 5.573337 AGAACAACTACGTCCTGGTATAC 57.427 43.478 0.00 0.00 0.00 1.47
391 396 5.711506 TCAAGAACAACTACGTCCTGGTATA 59.288 40.000 0.00 0.00 0.00 1.47
392 397 4.525487 TCAAGAACAACTACGTCCTGGTAT 59.475 41.667 0.00 0.00 0.00 2.73
393 398 3.890756 TCAAGAACAACTACGTCCTGGTA 59.109 43.478 0.00 0.00 0.00 3.25
394 399 2.696707 TCAAGAACAACTACGTCCTGGT 59.303 45.455 0.00 0.00 0.00 4.00
395 400 3.380479 TCAAGAACAACTACGTCCTGG 57.620 47.619 0.00 0.00 0.00 4.45
396 401 3.741344 CCTTCAAGAACAACTACGTCCTG 59.259 47.826 0.00 0.00 0.00 3.86
397 402 3.802675 GCCTTCAAGAACAACTACGTCCT 60.803 47.826 0.00 0.00 0.00 3.85
398 403 2.479275 GCCTTCAAGAACAACTACGTCC 59.521 50.000 0.00 0.00 0.00 4.79
399 404 2.155155 CGCCTTCAAGAACAACTACGTC 59.845 50.000 0.00 0.00 0.00 4.34
400 405 2.132762 CGCCTTCAAGAACAACTACGT 58.867 47.619 0.00 0.00 0.00 3.57
401 406 2.132762 ACGCCTTCAAGAACAACTACG 58.867 47.619 0.00 0.00 0.00 3.51
402 407 3.558418 TCAACGCCTTCAAGAACAACTAC 59.442 43.478 0.00 0.00 0.00 2.73
403 408 3.799366 TCAACGCCTTCAAGAACAACTA 58.201 40.909 0.00 0.00 0.00 2.24
404 409 2.639065 TCAACGCCTTCAAGAACAACT 58.361 42.857 0.00 0.00 0.00 3.16
405 410 3.414549 TTCAACGCCTTCAAGAACAAC 57.585 42.857 0.00 0.00 0.00 3.32
406 411 3.795150 GCATTCAACGCCTTCAAGAACAA 60.795 43.478 0.00 0.00 0.00 2.83
407 412 2.287547 GCATTCAACGCCTTCAAGAACA 60.288 45.455 0.00 0.00 0.00 3.18
408 413 2.319472 GCATTCAACGCCTTCAAGAAC 58.681 47.619 0.00 0.00 0.00 3.01
409 414 1.069296 CGCATTCAACGCCTTCAAGAA 60.069 47.619 0.00 0.00 0.00 2.52
410 415 0.516877 CGCATTCAACGCCTTCAAGA 59.483 50.000 0.00 0.00 0.00 3.02
411 416 0.454957 CCGCATTCAACGCCTTCAAG 60.455 55.000 0.00 0.00 0.00 3.02
412 417 1.169661 ACCGCATTCAACGCCTTCAA 61.170 50.000 0.00 0.00 0.00 2.69
413 418 1.599518 ACCGCATTCAACGCCTTCA 60.600 52.632 0.00 0.00 0.00 3.02
414 419 1.154225 CACCGCATTCAACGCCTTC 60.154 57.895 0.00 0.00 0.00 3.46
415 420 2.625823 CCACCGCATTCAACGCCTT 61.626 57.895 0.00 0.00 0.00 4.35
416 421 3.055719 CCACCGCATTCAACGCCT 61.056 61.111 0.00 0.00 0.00 5.52
417 422 4.114997 CCCACCGCATTCAACGCC 62.115 66.667 0.00 0.00 0.00 5.68
418 423 4.114997 CCCCACCGCATTCAACGC 62.115 66.667 0.00 0.00 0.00 4.84
419 424 3.439540 CCCCCACCGCATTCAACG 61.440 66.667 0.00 0.00 0.00 4.10
420 425 1.906333 AACCCCCACCGCATTCAAC 60.906 57.895 0.00 0.00 0.00 3.18
421 426 1.905843 CAACCCCCACCGCATTCAA 60.906 57.895 0.00 0.00 0.00 2.69
422 427 2.282816 CAACCCCCACCGCATTCA 60.283 61.111 0.00 0.00 0.00 2.57
423 428 3.758931 GCAACCCCCACCGCATTC 61.759 66.667 0.00 0.00 0.00 2.67
436 441 4.072088 CAAGGACCGCGTCGCAAC 62.072 66.667 18.75 7.35 32.65 4.17
446 451 3.435186 GCAAGAGCGGCAAGGACC 61.435 66.667 1.45 0.00 0.00 4.46
447 452 3.435186 GGCAAGAGCGGCAAGGAC 61.435 66.667 1.45 0.00 43.41 3.85
448 453 4.722700 GGGCAAGAGCGGCAAGGA 62.723 66.667 1.45 0.00 43.41 3.36
450 455 3.437795 CTGGGCAAGAGCGGCAAG 61.438 66.667 1.45 0.00 43.41 4.01
455 460 4.399395 TGGAGCTGGGCAAGAGCG 62.399 66.667 0.00 0.00 43.41 5.03
456 461 2.438075 CTGGAGCTGGGCAAGAGC 60.438 66.667 0.00 0.00 41.10 4.09
457 462 2.438075 GCTGGAGCTGGGCAAGAG 60.438 66.667 0.00 0.00 38.21 2.85
458 463 4.039092 GGCTGGAGCTGGGCAAGA 62.039 66.667 0.00 0.00 41.70 3.02
459 464 4.044439 AGGCTGGAGCTGGGCAAG 62.044 66.667 0.00 0.00 41.70 4.01
460 465 4.355720 CAGGCTGGAGCTGGGCAA 62.356 66.667 6.61 0.00 41.70 4.52
468 473 4.729918 GGTGGTGGCAGGCTGGAG 62.730 72.222 17.64 0.00 0.00 3.86
491 496 4.722700 CTGGTGTTCGGGGGCCTG 62.723 72.222 0.84 0.00 0.00 4.85
494 499 3.324108 TACCTGGTGTTCGGGGGC 61.324 66.667 10.23 0.00 46.36 5.80
495 500 0.615544 TACTACCTGGTGTTCGGGGG 60.616 60.000 10.23 0.00 46.36 5.40
496 501 0.822164 CTACTACCTGGTGTTCGGGG 59.178 60.000 10.23 0.00 46.36 5.73
498 503 3.947910 TTTCTACTACCTGGTGTTCGG 57.052 47.619 10.23 0.00 0.00 4.30
499 504 5.721232 AGATTTTCTACTACCTGGTGTTCG 58.279 41.667 10.23 0.00 0.00 3.95
500 505 6.107343 GGAGATTTTCTACTACCTGGTGTTC 58.893 44.000 10.23 0.00 0.00 3.18
501 506 5.546499 TGGAGATTTTCTACTACCTGGTGTT 59.454 40.000 10.23 0.00 0.00 3.32
502 507 5.091552 TGGAGATTTTCTACTACCTGGTGT 58.908 41.667 10.23 8.27 0.00 4.16
503 508 5.677319 TGGAGATTTTCTACTACCTGGTG 57.323 43.478 10.23 2.08 0.00 4.17
504 509 6.206042 AGATGGAGATTTTCTACTACCTGGT 58.794 40.000 4.05 4.05 0.00 4.00
505 510 6.739331 AGATGGAGATTTTCTACTACCTGG 57.261 41.667 0.00 0.00 0.00 4.45
506 511 7.213678 GGAAGATGGAGATTTTCTACTACCTG 58.786 42.308 0.00 0.00 0.00 4.00
507 512 6.327887 GGGAAGATGGAGATTTTCTACTACCT 59.672 42.308 0.00 0.00 0.00 3.08
508 513 6.464607 GGGGAAGATGGAGATTTTCTACTACC 60.465 46.154 0.00 0.00 0.00 3.18
509 514 6.464607 GGGGGAAGATGGAGATTTTCTACTAC 60.465 46.154 0.00 0.00 0.00 2.73
510 515 5.607171 GGGGGAAGATGGAGATTTTCTACTA 59.393 44.000 0.00 0.00 0.00 1.82
511 516 4.413851 GGGGGAAGATGGAGATTTTCTACT 59.586 45.833 0.00 0.00 0.00 2.57
512 517 4.413851 AGGGGGAAGATGGAGATTTTCTAC 59.586 45.833 0.00 0.00 0.00 2.59
513 518 4.413520 CAGGGGGAAGATGGAGATTTTCTA 59.586 45.833 0.00 0.00 0.00 2.10
514 519 3.203934 CAGGGGGAAGATGGAGATTTTCT 59.796 47.826 0.00 0.00 0.00 2.52
515 520 3.560105 CAGGGGGAAGATGGAGATTTTC 58.440 50.000 0.00 0.00 0.00 2.29
516 521 2.358615 GCAGGGGGAAGATGGAGATTTT 60.359 50.000 0.00 0.00 0.00 1.82
517 522 1.216427 GCAGGGGGAAGATGGAGATTT 59.784 52.381 0.00 0.00 0.00 2.17
518 523 0.849417 GCAGGGGGAAGATGGAGATT 59.151 55.000 0.00 0.00 0.00 2.40
519 524 1.414061 CGCAGGGGGAAGATGGAGAT 61.414 60.000 0.00 0.00 0.00 2.75
520 525 2.066393 CGCAGGGGGAAGATGGAGA 61.066 63.158 0.00 0.00 0.00 3.71
521 526 2.507944 CGCAGGGGGAAGATGGAG 59.492 66.667 0.00 0.00 0.00 3.86
522 527 3.797353 GCGCAGGGGGAAGATGGA 61.797 66.667 0.30 0.00 0.00 3.41
553 558 3.047877 GTTTGTCTGTCCCGGCGG 61.048 66.667 21.46 21.46 0.00 6.13
554 559 2.280524 TGTTTGTCTGTCCCGGCG 60.281 61.111 0.00 0.00 0.00 6.46
555 560 0.951040 CTCTGTTTGTCTGTCCCGGC 60.951 60.000 0.00 0.00 0.00 6.13
556 561 0.679505 TCTCTGTTTGTCTGTCCCGG 59.320 55.000 0.00 0.00 0.00 5.73
557 562 1.613925 TCTCTCTGTTTGTCTGTCCCG 59.386 52.381 0.00 0.00 0.00 5.14
558 563 2.365617 TGTCTCTCTGTTTGTCTGTCCC 59.634 50.000 0.00 0.00 0.00 4.46
559 564 3.319405 TCTGTCTCTCTGTTTGTCTGTCC 59.681 47.826 0.00 0.00 0.00 4.02
560 565 4.576216 TCTGTCTCTCTGTTTGTCTGTC 57.424 45.455 0.00 0.00 0.00 3.51
561 566 4.646945 TCTTCTGTCTCTCTGTTTGTCTGT 59.353 41.667 0.00 0.00 0.00 3.41
562 567 5.193663 TCTTCTGTCTCTCTGTTTGTCTG 57.806 43.478 0.00 0.00 0.00 3.51
563 568 5.221422 CCTTCTTCTGTCTCTCTGTTTGTCT 60.221 44.000 0.00 0.00 0.00 3.41
564 569 4.987912 CCTTCTTCTGTCTCTCTGTTTGTC 59.012 45.833 0.00 0.00 0.00 3.18
565 570 4.651503 TCCTTCTTCTGTCTCTCTGTTTGT 59.348 41.667 0.00 0.00 0.00 2.83
566 571 5.207110 TCCTTCTTCTGTCTCTCTGTTTG 57.793 43.478 0.00 0.00 0.00 2.93
567 572 5.279910 CCATCCTTCTTCTGTCTCTCTGTTT 60.280 44.000 0.00 0.00 0.00 2.83
568 573 4.222588 CCATCCTTCTTCTGTCTCTCTGTT 59.777 45.833 0.00 0.00 0.00 3.16
569 574 3.768757 CCATCCTTCTTCTGTCTCTCTGT 59.231 47.826 0.00 0.00 0.00 3.41
570 575 3.132646 CCCATCCTTCTTCTGTCTCTCTG 59.867 52.174 0.00 0.00 0.00 3.35
571 576 3.012274 TCCCATCCTTCTTCTGTCTCTCT 59.988 47.826 0.00 0.00 0.00 3.10
572 577 3.370104 TCCCATCCTTCTTCTGTCTCTC 58.630 50.000 0.00 0.00 0.00 3.20
573 578 3.481559 TCCCATCCTTCTTCTGTCTCT 57.518 47.619 0.00 0.00 0.00 3.10
574 579 3.243704 CGATCCCATCCTTCTTCTGTCTC 60.244 52.174 0.00 0.00 0.00 3.36
575 580 2.697751 CGATCCCATCCTTCTTCTGTCT 59.302 50.000 0.00 0.00 0.00 3.41
576 581 2.224161 CCGATCCCATCCTTCTTCTGTC 60.224 54.545 0.00 0.00 0.00 3.51
577 582 1.765314 CCGATCCCATCCTTCTTCTGT 59.235 52.381 0.00 0.00 0.00 3.41
578 583 1.071385 CCCGATCCCATCCTTCTTCTG 59.929 57.143 0.00 0.00 0.00 3.02
579 584 1.344496 ACCCGATCCCATCCTTCTTCT 60.344 52.381 0.00 0.00 0.00 2.85
580 585 1.132500 ACCCGATCCCATCCTTCTTC 58.868 55.000 0.00 0.00 0.00 2.87
581 586 1.212935 CAACCCGATCCCATCCTTCTT 59.787 52.381 0.00 0.00 0.00 2.52
582 587 0.839946 CAACCCGATCCCATCCTTCT 59.160 55.000 0.00 0.00 0.00 2.85
583 588 0.546598 ACAACCCGATCCCATCCTTC 59.453 55.000 0.00 0.00 0.00 3.46
584 589 0.255890 CACAACCCGATCCCATCCTT 59.744 55.000 0.00 0.00 0.00 3.36
585 590 1.635817 CCACAACCCGATCCCATCCT 61.636 60.000 0.00 0.00 0.00 3.24
586 591 1.152963 CCACAACCCGATCCCATCC 60.153 63.158 0.00 0.00 0.00 3.51
587 592 1.152963 CCCACAACCCGATCCCATC 60.153 63.158 0.00 0.00 0.00 3.51
588 593 3.006677 CCCACAACCCGATCCCAT 58.993 61.111 0.00 0.00 0.00 4.00
589 594 4.041762 GCCCACAACCCGATCCCA 62.042 66.667 0.00 0.00 0.00 4.37
592 597 4.778143 AGCGCCCACAACCCGATC 62.778 66.667 2.29 0.00 0.00 3.69
605 610 2.980233 AAACACTCCAGGCAGCGC 60.980 61.111 0.00 0.00 0.00 5.92
606 611 1.597854 TCAAACACTCCAGGCAGCG 60.598 57.895 0.00 0.00 0.00 5.18
607 612 0.819259 TGTCAAACACTCCAGGCAGC 60.819 55.000 0.00 0.00 0.00 5.25
608 613 1.679139 TTGTCAAACACTCCAGGCAG 58.321 50.000 0.00 0.00 0.00 4.85
609 614 2.136298 TTTGTCAAACACTCCAGGCA 57.864 45.000 0.00 0.00 0.00 4.75
610 615 3.518634 TTTTTGTCAAACACTCCAGGC 57.481 42.857 0.00 0.00 0.00 4.85
637 643 1.742880 GGACGCGAACCCCTAAACC 60.743 63.158 15.93 0.00 0.00 3.27
2261 2323 4.282957 GCATCAGACTGATCATTCCTAGGA 59.717 45.833 15.24 7.62 34.28 2.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.