Multiple sequence alignment - TraesCS4D01G333400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G333400 chr4D 100.000 8832 0 0 1 8832 490944304 490935473 0.000000e+00 16310.0
1 TraesCS4D01G333400 chr4D 91.509 106 8 1 585 690 494876016 494875912 2.570000e-30 145.0
2 TraesCS4D01G333400 chrUn 94.564 1950 88 11 2230 4166 100258023 100256079 0.000000e+00 2998.0
3 TraesCS4D01G333400 chrUn 94.036 1442 60 9 4263 5698 100256077 100254656 0.000000e+00 2163.0
4 TraesCS4D01G333400 chrUn 89.825 1484 89 31 6424 7874 100254108 100252654 0.000000e+00 1847.0
5 TraesCS4D01G333400 chrUn 96.145 441 13 3 5692 6129 100254543 100254104 0.000000e+00 717.0
6 TraesCS4D01G333400 chrUn 85.307 701 90 9 8137 8832 100251495 100250803 0.000000e+00 712.0
7 TraesCS4D01G333400 chrUn 92.060 403 14 6 1114 1516 100258658 100258274 1.300000e-152 551.0
8 TraesCS4D01G333400 chrUn 88.550 393 35 9 17 405 100259558 100259172 1.340000e-127 468.0
9 TraesCS4D01G333400 chrUn 92.083 240 7 4 1547 1775 100258278 100258040 2.380000e-85 327.0
10 TraesCS4D01G333400 chrUn 88.344 163 15 2 7846 8007 100252640 100252481 9.050000e-45 193.0
11 TraesCS4D01G333400 chr4B 94.804 1482 60 9 2698 4165 671756439 671757917 0.000000e+00 2294.0
12 TraesCS4D01G333400 chr4B 84.823 2405 215 73 5692 8029 671759455 671761776 0.000000e+00 2281.0
13 TraesCS4D01G333400 chr4B 91.782 1448 78 17 4262 5695 671757919 671759339 0.000000e+00 1977.0
14 TraesCS4D01G333400 chr4B 95.265 697 25 5 8137 8832 671761815 671762504 0.000000e+00 1098.0
15 TraesCS4D01G333400 chr4B 84.335 932 77 26 1070 1980 671754978 671755861 0.000000e+00 848.0
16 TraesCS4D01G333400 chr4B 89.454 531 46 9 1 525 671752646 671753172 0.000000e+00 662.0
17 TraesCS4D01G333400 chr4B 85.154 357 46 4 689 1043 671753210 671753561 8.430000e-95 359.0
18 TraesCS4D01G333400 chr4B 93.431 137 6 1 2052 2185 671755867 671756003 5.410000e-47 200.0
19 TraesCS4D01G333400 chr4B 96.040 101 4 0 2250 2350 671756297 671756397 1.970000e-36 165.0
20 TraesCS4D01G333400 chr4B 81.026 195 30 4 8238 8432 40217616 40217803 1.990000e-31 148.0
21 TraesCS4D01G333400 chr4B 91.429 70 3 1 1371 1440 352355678 352355744 9.440000e-15 93.5
22 TraesCS4D01G333400 chr5A 92.511 1549 78 17 2361 3873 659166916 659165370 0.000000e+00 2183.0
23 TraesCS4D01G333400 chr5A 93.579 1386 62 10 4325 5698 659163280 659161910 0.000000e+00 2041.0
24 TraesCS4D01G333400 chr5A 90.715 1454 87 19 4239 5673 709759422 709760846 0.000000e+00 1893.0
25 TraesCS4D01G333400 chr5A 88.731 1482 104 34 6424 7874 659161428 659159979 0.000000e+00 1753.0
26 TraesCS4D01G333400 chr5A 92.294 1103 67 10 3092 4180 709758309 709759407 0.000000e+00 1550.0
27 TraesCS4D01G333400 chr5A 82.835 1037 76 44 7019 8006 709762482 709763465 0.000000e+00 835.0
28 TraesCS4D01G333400 chr5A 85.064 703 87 12 8137 8832 709764428 709765119 0.000000e+00 701.0
29 TraesCS4D01G333400 chr5A 81.050 686 75 19 6339 7017 709761744 709762381 6.160000e-136 496.0
30 TraesCS4D01G333400 chr5A 82.233 636 39 26 1080 1678 659168348 659167750 1.720000e-131 481.0
31 TraesCS4D01G333400 chr5A 89.197 361 17 8 1830 2189 659167592 659167253 1.760000e-116 431.0
32 TraesCS4D01G333400 chr5A 92.466 292 15 7 3877 4166 659163743 659163457 2.290000e-110 411.0
33 TraesCS4D01G333400 chr5A 87.047 386 19 6 5753 6129 659161787 659161424 2.970000e-109 407.0
34 TraesCS4D01G333400 chr5A 84.574 376 50 5 692 1065 659168779 659168410 5.040000e-97 366.0
35 TraesCS4D01G333400 chr5A 86.022 186 14 6 7846 8023 659159965 659159784 1.170000e-43 189.0
36 TraesCS4D01G333400 chr5A 88.125 160 14 4 3 160 531536565 531536721 1.510000e-42 185.0
37 TraesCS4D01G333400 chr5A 100.000 38 0 0 1726 1763 659167739 659167702 4.420000e-08 71.3
38 TraesCS4D01G333400 chr1B 86.455 347 13 9 1135 1466 685657711 685657384 5.070000e-92 350.0
39 TraesCS4D01G333400 chr1B 92.045 88 4 2 1302 1389 121025598 121025682 4.330000e-23 121.0
40 TraesCS4D01G333400 chr7D 87.448 239 23 7 8599 8832 507793452 507793688 1.460000e-67 268.0
41 TraesCS4D01G333400 chr7D 89.565 115 9 2 579 691 201883408 201883295 9.240000e-30 143.0
42 TraesCS4D01G333400 chr7A 85.356 239 28 7 8599 8832 577247678 577247914 3.190000e-59 241.0
43 TraesCS4D01G333400 chr7A 96.154 104 4 0 4165 4268 238526217 238526320 4.240000e-38 171.0
44 TraesCS4D01G333400 chr7A 81.481 216 23 8 377 578 6098530 6098742 2.550000e-35 161.0
45 TraesCS4D01G333400 chr7A 94.286 70 1 1 1371 1440 728273933 728273999 4.360000e-18 104.0
46 TraesCS4D01G333400 chr3D 87.578 161 18 2 1 160 422528956 422528797 1.510000e-42 185.0
47 TraesCS4D01G333400 chr3D 86.420 162 19 3 1 160 543996912 543997072 3.280000e-39 174.0
48 TraesCS4D01G333400 chr3D 78.469 209 31 8 689 896 410316447 410316642 3.350000e-24 124.0
49 TraesCS4D01G333400 chr3D 94.545 55 3 0 1133 1187 599887950 599888004 1.580000e-12 86.1
50 TraesCS4D01G333400 chr3D 88.235 51 5 1 529 579 410316333 410316382 9.580000e-05 60.2
51 TraesCS4D01G333400 chr3A 87.578 161 18 2 1 160 566874472 566874631 1.510000e-42 185.0
52 TraesCS4D01G333400 chr3B 87.578 161 16 3 1 160 550653003 550652846 5.450000e-42 183.0
53 TraesCS4D01G333400 chr7B 87.500 160 15 5 3 160 547943819 547943663 7.040000e-41 180.0
54 TraesCS4D01G333400 chr7B 97.115 104 3 0 4161 4264 194668096 194667993 9.110000e-40 176.0
55 TraesCS4D01G333400 chr7B 95.327 107 5 0 4155 4261 562993056 562993162 4.240000e-38 171.0
56 TraesCS4D01G333400 chr7B 92.661 109 7 1 586 694 383736233 383736126 1.190000e-33 156.0
57 TraesCS4D01G333400 chr7B 97.826 46 1 0 1293 1338 703901983 703902028 7.350000e-11 80.5
58 TraesCS4D01G333400 chr7B 97.143 35 0 1 529 563 739484659 739484626 3.440000e-04 58.4
59 TraesCS4D01G333400 chr2A 86.957 161 19 2 1 161 177658572 177658414 7.040000e-41 180.0
60 TraesCS4D01G333400 chr5B 98.020 101 2 0 4162 4262 203503050 203503150 9.110000e-40 176.0
61 TraesCS4D01G333400 chr5B 88.235 51 5 1 529 579 697787374 697787325 9.580000e-05 60.2
62 TraesCS4D01G333400 chr5B 96.774 31 1 0 526 556 697787267 697787297 1.600000e-02 52.8
63 TraesCS4D01G333400 chr1D 98.980 98 1 0 4165 4262 209519496 209519399 9.110000e-40 176.0
64 TraesCS4D01G333400 chr1D 96.190 105 4 0 4167 4271 135930953 135931057 1.180000e-38 172.0
65 TraesCS4D01G333400 chr1D 90.179 112 10 1 579 690 307346513 307346623 2.570000e-30 145.0
66 TraesCS4D01G333400 chr2D 97.980 99 2 0 4163 4261 445894982 445894884 1.180000e-38 172.0
67 TraesCS4D01G333400 chr2D 91.228 114 9 1 579 692 109700356 109700468 4.270000e-33 154.0
68 TraesCS4D01G333400 chr2D 93.617 47 3 0 1293 1339 83637278 83637232 4.420000e-08 71.3
69 TraesCS4D01G333400 chr2B 92.500 120 5 4 4158 4275 230532525 230532408 1.520000e-37 169.0
70 TraesCS4D01G333400 chr2B 92.661 109 7 1 586 694 412778681 412778574 1.190000e-33 156.0
71 TraesCS4D01G333400 chr2B 92.233 103 7 1 588 690 329979403 329979302 2.570000e-30 145.0
72 TraesCS4D01G333400 chr2B 90.196 51 4 1 529 579 759556383 759556334 2.060000e-06 65.8
73 TraesCS4D01G333400 chr6B 96.970 99 3 0 4163 4261 518389530 518389432 5.480000e-37 167.0
74 TraesCS4D01G333400 chr6B 92.857 70 2 1 1371 1440 210085932 210085866 2.030000e-16 99.0
75 TraesCS4D01G333400 chr6B 91.045 67 6 0 1124 1190 706039492 706039426 3.400000e-14 91.6
76 TraesCS4D01G333400 chr6B 95.455 44 2 0 1293 1336 210085981 210085938 4.420000e-08 71.3
77 TraesCS4D01G333400 chr6A 91.743 109 8 1 585 693 498330458 498330351 5.520000e-32 150.0
78 TraesCS4D01G333400 chr6A 92.857 70 2 1 1371 1440 47594699 47594633 2.030000e-16 99.0
79 TraesCS4D01G333400 chr4A 82.927 164 28 0 695 858 483386797 483386634 1.990000e-31 148.0
80 TraesCS4D01G333400 chr4A 92.857 70 2 1 1371 1440 696217375 696217441 2.030000e-16 99.0
81 TraesCS4D01G333400 chr4A 97.727 44 1 0 1293 1336 653988615 653988572 9.510000e-10 76.8
82 TraesCS4D01G333400 chr4A 88.235 51 5 1 529 579 483386854 483386805 9.580000e-05 60.2
83 TraesCS4D01G333400 chr1A 91.429 105 8 1 588 692 498452769 498452666 9.240000e-30 143.0
84 TraesCS4D01G333400 chr1A 93.617 47 3 0 1293 1339 11791921 11791875 4.420000e-08 71.3
85 TraesCS4D01G333400 chr5D 100.000 31 0 0 157 187 335059236 335059206 3.440000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G333400 chr4D 490935473 490944304 8831 True 16310.000000 16310 100.000000 1 8832 1 chr4D.!!$R1 8831
1 TraesCS4D01G333400 chrUn 100250803 100259558 8755 True 1108.444444 2998 91.212667 17 8832 9 chrUn.!!$R1 8815
2 TraesCS4D01G333400 chr4B 671752646 671762504 9858 False 1098.222222 2294 90.565333 1 8832 9 chr4B.!!$F3 8831
3 TraesCS4D01G333400 chr5A 709758309 709765119 6810 False 1095.000000 1893 86.391600 3092 8832 5 chr5A.!!$F2 5740
4 TraesCS4D01G333400 chr5A 659159784 659168779 8995 True 833.330000 2183 89.636000 692 8023 10 chr5A.!!$R1 7331

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
806 813 0.458669 GCCATTCCGACGAAGAGGTA 59.541 55.0 0.0 0.0 32.38 3.08 F
1984 3607 0.108207 GGATGTGGAGGAGGCATCTG 59.892 60.0 0.0 0.0 39.04 2.90 F
2000 3623 0.178891 TCTGGGAAGAGGAAGGTGCT 60.179 55.0 0.0 0.0 0.00 4.40 F
3587 5463 0.698238 TGCCTTGGCATGGACTACTT 59.302 50.0 22.5 0.0 0.00 2.24 F
4180 7706 0.115745 AACTACTCCCTCCGTCCCAA 59.884 55.0 0.0 0.0 0.00 4.12 F
5584 9244 0.548510 GGCTTGGCAGAGGATACCTT 59.451 55.0 0.0 0.0 31.76 3.50 F
6801 10799 0.036164 ACGTCCTTGCTGTTATGCCA 59.964 50.0 0.0 0.0 0.00 4.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2432 4287 0.038251 CACTAGCCACTGACGCTTCA 60.038 55.000 0.00 0.0 37.79 3.02 R
2910 4778 2.029918 GTCCTGGCTGAAATGGACAAAC 60.030 50.000 6.18 0.0 45.87 2.93 R
3967 7491 4.224433 TCGTAAGTTCAGTTAGCGACTTG 58.776 43.478 0.00 0.0 35.68 3.16 R
5356 9015 0.798776 CAGATCGAAACTGTGCCACC 59.201 55.000 12.74 0.0 0.00 4.61 R
6178 10103 0.255890 ACCAGAGCAACAACCACAGT 59.744 50.000 0.00 0.0 0.00 3.55 R
7064 11169 0.100325 CGTTTGCTTTGACAGGTGCA 59.900 50.000 0.00 0.0 0.00 4.57 R
8383 13481 1.544093 CGTATGCTCCCATGCTCCAAT 60.544 52.381 0.00 0.0 32.60 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
186 189 2.109126 GGGCATCTCCAACGCTGAC 61.109 63.158 0.00 0.00 36.21 3.51
187 190 2.109126 GGCATCTCCAACGCTGACC 61.109 63.158 0.00 0.00 34.01 4.02
224 227 1.153784 GTATTTGTCCGCGGACCGA 60.154 57.895 45.59 35.67 43.97 4.69
246 249 1.305802 AGGCTGGTGTCCGGACATA 60.306 57.895 38.11 27.65 41.30 2.29
252 255 2.956333 CTGGTGTCCGGACATAGATACA 59.044 50.000 38.11 25.72 43.97 2.29
265 268 1.302033 GATACAGGAGGCGGCCATG 60.302 63.158 23.09 18.28 0.00 3.66
284 287 5.476599 GCCATGCAACCATATACCTCAAATA 59.523 40.000 0.00 0.00 0.00 1.40
341 345 5.163963 GCCAAATTCTTCCGCAAATTAACAG 60.164 40.000 0.00 0.00 0.00 3.16
360 364 3.059166 CAGCCTTTTGCCAACATGTTAC 58.941 45.455 11.53 7.29 42.71 2.50
367 371 6.238076 CCTTTTGCCAACATGTTACAAAGAAC 60.238 38.462 25.61 8.19 32.84 3.01
368 372 3.958704 TGCCAACATGTTACAAAGAACG 58.041 40.909 11.53 0.00 31.59 3.95
423 430 3.181465 CCTTGCTAATCATACACCTCCGT 60.181 47.826 0.00 0.00 0.00 4.69
436 443 4.727677 ACACCTCCGTAAAAATGGGTTTA 58.272 39.130 0.00 0.00 0.00 2.01
438 445 5.009911 ACACCTCCGTAAAAATGGGTTTAAC 59.990 40.000 0.00 0.00 0.00 2.01
456 463 7.225145 GGGTTTAACCATTTTCAAACCTTACAC 59.775 37.037 16.58 0.00 45.97 2.90
466 473 2.632512 CAAACCTTACACCAAATGCCCT 59.367 45.455 0.00 0.00 0.00 5.19
481 488 6.480981 CCAAATGCCCTAATCTATTTGCAAAG 59.519 38.462 18.19 4.83 38.53 2.77
485 492 5.187576 TGCCCTAATCTATTTGCAAAGCTTT 59.812 36.000 18.19 5.69 0.00 3.51
496 503 1.606606 CAAAGCTTTCGTCATTCCGC 58.393 50.000 9.23 0.00 0.00 5.54
509 516 1.735018 CATTCCGCCAAACGTGTGATA 59.265 47.619 7.48 0.00 41.42 2.15
512 519 1.801771 TCCGCCAAACGTGTGATAAAG 59.198 47.619 7.48 0.00 41.42 1.85
525 532 9.886132 AACGTGTGATAAAGAACCTTAATAGAT 57.114 29.630 0.00 0.00 0.00 1.98
536 543 9.700831 AAGAACCTTAATAGATTACCAAATGCT 57.299 29.630 0.00 0.00 0.00 3.79
547 554 8.059798 AGATTACCAAATGCTAATCATATGGC 57.940 34.615 2.13 0.00 33.47 4.40
583 590 8.116026 ACCTTCTATCAAATACCCAAATCTGTT 58.884 33.333 0.00 0.00 0.00 3.16
584 591 8.624776 CCTTCTATCAAATACCCAAATCTGTTC 58.375 37.037 0.00 0.00 0.00 3.18
585 592 7.786178 TCTATCAAATACCCAAATCTGTTCG 57.214 36.000 0.00 0.00 0.00 3.95
586 593 7.561251 TCTATCAAATACCCAAATCTGTTCGA 58.439 34.615 0.00 0.00 0.00 3.71
587 594 8.044309 TCTATCAAATACCCAAATCTGTTCGAA 58.956 33.333 0.00 0.00 0.00 3.71
588 595 6.885952 TCAAATACCCAAATCTGTTCGAAA 57.114 33.333 0.00 0.00 0.00 3.46
589 596 7.278461 TCAAATACCCAAATCTGTTCGAAAA 57.722 32.000 0.00 0.00 0.00 2.29
590 597 7.717568 TCAAATACCCAAATCTGTTCGAAAAA 58.282 30.769 0.00 0.00 0.00 1.94
610 617 5.473066 AAAACTTGTCCCTCAAATGGATG 57.527 39.130 0.00 0.00 35.48 3.51
611 618 3.814504 ACTTGTCCCTCAAATGGATGT 57.185 42.857 0.00 0.00 35.48 3.06
612 619 4.927267 ACTTGTCCCTCAAATGGATGTA 57.073 40.909 0.00 0.00 35.48 2.29
613 620 5.456921 ACTTGTCCCTCAAATGGATGTAT 57.543 39.130 0.00 0.00 35.48 2.29
614 621 5.440610 ACTTGTCCCTCAAATGGATGTATC 58.559 41.667 0.00 0.00 35.48 2.24
615 622 5.192522 ACTTGTCCCTCAAATGGATGTATCT 59.807 40.000 0.00 0.00 35.48 1.98
616 623 6.386927 ACTTGTCCCTCAAATGGATGTATCTA 59.613 38.462 0.00 0.00 35.48 1.98
617 624 6.425210 TGTCCCTCAAATGGATGTATCTAG 57.575 41.667 0.00 0.00 33.65 2.43
618 625 5.307976 TGTCCCTCAAATGGATGTATCTAGG 59.692 44.000 0.00 0.00 33.65 3.02
619 626 5.544176 GTCCCTCAAATGGATGTATCTAGGA 59.456 44.000 0.00 0.00 33.65 2.94
620 627 5.544176 TCCCTCAAATGGATGTATCTAGGAC 59.456 44.000 0.00 0.00 0.00 3.85
621 628 5.280215 CCCTCAAATGGATGTATCTAGGACC 60.280 48.000 0.00 0.00 0.00 4.46
622 629 5.307976 CCTCAAATGGATGTATCTAGGACCA 59.692 44.000 0.00 0.00 0.00 4.02
623 630 6.183361 CCTCAAATGGATGTATCTAGGACCAA 60.183 42.308 0.00 0.00 0.00 3.67
624 631 6.830912 TCAAATGGATGTATCTAGGACCAAG 58.169 40.000 0.00 0.00 0.00 3.61
625 632 6.386927 TCAAATGGATGTATCTAGGACCAAGT 59.613 38.462 0.00 0.00 0.00 3.16
626 633 6.831664 AATGGATGTATCTAGGACCAAGTT 57.168 37.500 0.00 0.00 0.00 2.66
627 634 7.931015 AATGGATGTATCTAGGACCAAGTTA 57.069 36.000 0.00 0.00 0.00 2.24
628 635 6.978674 TGGATGTATCTAGGACCAAGTTAG 57.021 41.667 0.00 0.00 0.00 2.34
629 636 6.441222 TGGATGTATCTAGGACCAAGTTAGT 58.559 40.000 0.00 0.00 0.00 2.24
630 637 7.589081 TGGATGTATCTAGGACCAAGTTAGTA 58.411 38.462 0.00 0.00 0.00 1.82
631 638 8.063153 TGGATGTATCTAGGACCAAGTTAGTAA 58.937 37.037 0.00 0.00 0.00 2.24
632 639 9.091220 GGATGTATCTAGGACCAAGTTAGTAAT 57.909 37.037 0.00 0.00 0.00 1.89
642 649 9.091220 AGGACCAAGTTAGTAATAGATACATCC 57.909 37.037 0.00 0.00 36.94 3.51
643 650 8.867097 GGACCAAGTTAGTAATAGATACATCCA 58.133 37.037 0.00 0.00 36.94 3.41
657 664 9.911788 ATAGATACATCCATTTGAAAGACAAGT 57.088 29.630 0.00 0.00 39.77 3.16
658 665 8.641498 AGATACATCCATTTGAAAGACAAGTT 57.359 30.769 0.00 0.00 39.77 2.66
659 666 9.082313 AGATACATCCATTTGAAAGACAAGTTT 57.918 29.630 0.00 0.00 39.77 2.66
660 667 9.132521 GATACATCCATTTGAAAGACAAGTTTG 57.867 33.333 0.00 0.00 39.77 2.93
661 668 6.282930 ACATCCATTTGAAAGACAAGTTTGG 58.717 36.000 0.00 0.00 39.77 3.28
662 669 5.275067 TCCATTTGAAAGACAAGTTTGGG 57.725 39.130 0.00 0.00 39.77 4.12
663 670 4.959210 TCCATTTGAAAGACAAGTTTGGGA 59.041 37.500 0.00 0.00 39.77 4.37
664 671 5.049828 CCATTTGAAAGACAAGTTTGGGAC 58.950 41.667 0.00 0.00 39.77 4.46
665 672 5.395103 CCATTTGAAAGACAAGTTTGGGACA 60.395 40.000 0.00 0.00 39.77 4.02
666 673 5.730296 TTTGAAAGACAAGTTTGGGACAA 57.270 34.783 0.00 0.00 41.27 3.18
667 674 5.323371 TTGAAAGACAAGTTTGGGACAAG 57.677 39.130 0.00 0.00 37.48 3.16
668 675 4.770010 TTGAAAGACAAGTTTGGGACAAGT 59.230 37.500 0.00 0.00 37.48 3.16
669 676 5.245075 TTGAAAGACAAGTTTGGGACAAGTT 59.755 36.000 0.00 0.00 37.48 2.66
670 677 6.239458 TTGAAAGACAAGTTTGGGACAAGTTT 60.239 34.615 0.00 0.00 37.48 2.66
671 678 7.688083 TTGAAAGACAAGTTTGGGACAAGTTTT 60.688 33.333 0.00 0.00 37.48 2.43
679 686 2.567985 TGGGACAAGTTTTTCTCGGAC 58.432 47.619 0.00 0.00 31.92 4.79
680 687 1.529865 GGGACAAGTTTTTCTCGGACG 59.470 52.381 0.00 0.00 0.00 4.79
681 688 2.476821 GGACAAGTTTTTCTCGGACGA 58.523 47.619 0.00 0.00 0.00 4.20
682 689 2.867975 GGACAAGTTTTTCTCGGACGAA 59.132 45.455 0.00 0.00 0.00 3.85
683 690 3.059800 GGACAAGTTTTTCTCGGACGAAG 60.060 47.826 0.00 0.00 0.00 3.79
684 691 2.870411 ACAAGTTTTTCTCGGACGAAGG 59.130 45.455 0.00 0.00 0.00 3.46
685 692 2.165319 AGTTTTTCTCGGACGAAGGG 57.835 50.000 0.00 0.00 0.00 3.95
686 693 1.690352 AGTTTTTCTCGGACGAAGGGA 59.310 47.619 0.00 0.00 0.00 4.20
687 694 2.067013 GTTTTTCTCGGACGAAGGGAG 58.933 52.381 0.00 0.00 0.00 4.30
688 695 1.335145 TTTTCTCGGACGAAGGGAGT 58.665 50.000 0.00 0.00 0.00 3.85
689 696 2.205022 TTTCTCGGACGAAGGGAGTA 57.795 50.000 0.00 0.00 0.00 2.59
690 697 2.431954 TTCTCGGACGAAGGGAGTAT 57.568 50.000 0.00 0.00 0.00 2.12
709 716 2.128853 TTTGCAAAGCTTCCGCCGAG 62.129 55.000 8.05 0.00 36.60 4.63
774 781 5.105917 CCTTCCGCCAATTAACAACAATAGT 60.106 40.000 0.00 0.00 0.00 2.12
786 793 3.006967 ACAACAATAGTCAGCGGTCTTCT 59.993 43.478 0.00 0.00 0.00 2.85
790 797 0.898326 TAGTCAGCGGTCTTCTGCCA 60.898 55.000 0.00 0.00 46.23 4.92
792 799 0.674895 GTCAGCGGTCTTCTGCCATT 60.675 55.000 0.00 0.00 46.23 3.16
794 801 1.078143 AGCGGTCTTCTGCCATTCC 60.078 57.895 0.00 0.00 46.23 3.01
806 813 0.458669 GCCATTCCGACGAAGAGGTA 59.541 55.000 0.00 0.00 32.38 3.08
819 827 0.615331 AGAGGTAGGGTACGTGACGA 59.385 55.000 13.70 0.00 0.00 4.20
868 876 4.082679 GGACTCTCGCAAAGTCTCTCTTTA 60.083 45.833 9.26 0.00 43.57 1.85
876 884 6.073222 TCGCAAAGTCTCTCTTTATTTGGTTC 60.073 38.462 0.00 0.00 43.57 3.62
877 885 6.073003 CGCAAAGTCTCTCTTTATTTGGTTCT 60.073 38.462 0.00 0.00 43.57 3.01
885 893 7.448161 TCTCTCTTTATTTGGTTCTGATTTGCA 59.552 33.333 0.00 0.00 0.00 4.08
894 902 4.051237 GGTTCTGATTTGCAGGAAAACAC 58.949 43.478 0.00 0.00 44.98 3.32
902 912 3.159213 TGCAGGAAAACACATCCAGAT 57.841 42.857 0.00 0.00 39.55 2.90
931 941 3.402681 CCGATGGGGTGCCAGACT 61.403 66.667 0.00 0.00 0.00 3.24
958 968 6.379988 GGTTGGTTGGTAAATTATGTCTGGAT 59.620 38.462 0.00 0.00 0.00 3.41
990 1000 1.453015 CGGATGCGGGGGATTTGAA 60.453 57.895 0.00 0.00 0.00 2.69
1000 1010 1.095600 GGGATTTGAAGGTCCGCTTC 58.904 55.000 0.00 0.00 35.28 3.86
1065 2473 1.920325 CTGAGGAGTGGGGCCAAGA 60.920 63.158 4.39 0.00 0.00 3.02
1067 2475 1.301293 GAGGAGTGGGGCCAAGAAG 59.699 63.158 4.39 0.00 0.00 2.85
1068 2476 2.361737 GGAGTGGGGCCAAGAAGC 60.362 66.667 4.39 0.00 0.00 3.86
1109 2594 3.730761 CCGCACTTGACAGCCAGC 61.731 66.667 0.00 0.00 0.00 4.85
1131 2618 1.530419 AGATCTCTCGCCGGATGCT 60.530 57.895 5.05 0.00 38.05 3.79
1561 3109 2.424705 CTTGTGCCGCTTGGTTGCAT 62.425 55.000 0.00 0.00 37.34 3.96
1668 3220 1.401931 CGCTGAACCTGAATTGCTTGG 60.402 52.381 0.00 0.00 0.00 3.61
1808 3423 1.670791 TGTCCCGTGAAGTTTGGAAC 58.329 50.000 0.00 0.00 0.00 3.62
1809 3424 0.584876 GTCCCGTGAAGTTTGGAACG 59.415 55.000 0.00 0.00 36.23 3.95
1810 3425 0.464870 TCCCGTGAAGTTTGGAACGA 59.535 50.000 0.00 0.00 38.27 3.85
1811 3426 1.134461 TCCCGTGAAGTTTGGAACGAA 60.134 47.619 0.00 0.00 38.27 3.85
1812 3427 1.003223 CCCGTGAAGTTTGGAACGAAC 60.003 52.381 0.00 0.00 38.27 3.95
1853 3468 1.584175 CTTCAGATGGCTGCTGCTAG 58.416 55.000 15.64 0.00 42.01 3.42
1854 3469 0.907486 TTCAGATGGCTGCTGCTAGT 59.093 50.000 15.64 1.75 42.01 2.57
1855 3470 1.780503 TCAGATGGCTGCTGCTAGTA 58.219 50.000 15.64 0.64 42.01 1.82
1856 3471 1.685517 TCAGATGGCTGCTGCTAGTAG 59.314 52.381 15.64 3.05 42.01 2.57
1869 3484 4.344978 CTGCTAGTAGGTAGGCATGGATA 58.655 47.826 0.00 0.00 34.12 2.59
1934 3557 5.290158 CACGCTTAAATATGTCAAGTACCGT 59.710 40.000 0.00 0.00 0.00 4.83
1984 3607 0.108207 GGATGTGGAGGAGGCATCTG 59.892 60.000 0.00 0.00 39.04 2.90
2000 3623 0.178891 TCTGGGAAGAGGAAGGTGCT 60.179 55.000 0.00 0.00 0.00 4.40
2034 3657 4.796231 GGTGCGCGTCCTCGATGT 62.796 66.667 8.43 0.00 39.71 3.06
2202 3844 4.741239 TGGGAGAGGAGGGGTGGC 62.741 72.222 0.00 0.00 0.00 5.01
2204 3846 4.779733 GGAGAGGAGGGGTGGCGA 62.780 72.222 0.00 0.00 0.00 5.54
2205 3847 2.683933 GAGAGGAGGGGTGGCGAA 60.684 66.667 0.00 0.00 0.00 4.70
2206 3848 2.685380 AGAGGAGGGGTGGCGAAG 60.685 66.667 0.00 0.00 0.00 3.79
2219 3861 3.726517 CGAAGCGTTGGTGGGCAG 61.727 66.667 0.00 0.00 0.00 4.85
2220 3862 2.594592 GAAGCGTTGGTGGGCAGT 60.595 61.111 0.00 0.00 0.00 4.40
2221 3863 2.123897 AAGCGTTGGTGGGCAGTT 60.124 55.556 0.00 0.00 0.00 3.16
2222 3864 2.406452 GAAGCGTTGGTGGGCAGTTG 62.406 60.000 0.00 0.00 0.00 3.16
2223 3865 3.977244 GCGTTGGTGGGCAGTTGG 61.977 66.667 0.00 0.00 0.00 3.77
2224 3866 3.294493 CGTTGGTGGGCAGTTGGG 61.294 66.667 0.00 0.00 0.00 4.12
2225 3867 2.917227 GTTGGTGGGCAGTTGGGG 60.917 66.667 0.00 0.00 0.00 4.96
2226 3868 4.232061 TTGGTGGGCAGTTGGGGG 62.232 66.667 0.00 0.00 0.00 5.40
2313 4168 2.853290 GCTGCACTGCAAGCCTGTT 61.853 57.895 4.99 0.00 38.41 3.16
2417 4272 3.706373 GAGAAGGCGGCAGTGGGA 61.706 66.667 13.08 0.00 0.00 4.37
2426 4281 2.730524 GGCAGTGGGAGAGAGGAGC 61.731 68.421 0.00 0.00 0.00 4.70
2432 4287 1.379309 GGGAGAGAGGAGCGTCAGT 60.379 63.158 0.00 0.00 0.00 3.41
2480 4336 2.478292 GGGTGGAGGAGAACTTATCCA 58.522 52.381 5.25 5.30 39.47 3.41
2528 4384 2.740055 GCGCCGCTCATGGGATAG 60.740 66.667 0.00 0.00 0.00 2.08
2752 4608 5.862323 CCAGTCCAGTACGTGTATATATTGC 59.138 44.000 0.00 0.00 0.00 3.56
2772 4633 0.750546 CCCATGGCCTCATGTGACTG 60.751 60.000 6.09 0.00 46.96 3.51
2832 4698 6.284891 TCTTCTGCCAAAAGGGAAATAATG 57.715 37.500 0.00 0.00 40.01 1.90
3121 4991 7.212274 AGCTCAAACTTTGCATGTTTTCTAAT 58.788 30.769 13.45 0.92 35.71 1.73
3320 5190 7.161773 AGCATGCTAGTAAAATGAACATTGT 57.838 32.000 21.21 0.00 0.00 2.71
3509 5385 6.094048 CGAGTTTATTGGTTCATGTTCTGGAT 59.906 38.462 0.00 0.00 0.00 3.41
3528 5404 8.561738 TCTGGATTCTATTGGAAACTGTTAAC 57.438 34.615 0.00 0.00 37.49 2.01
3587 5463 0.698238 TGCCTTGGCATGGACTACTT 59.302 50.000 22.50 0.00 0.00 2.24
3630 5510 9.800433 AATGAAACGCACATGAATATCATTTAA 57.200 25.926 0.00 0.00 34.28 1.52
3681 5572 6.599244 TGAGAAACATCACAGTTCTCAACTTT 59.401 34.615 11.78 0.00 40.46 2.66
3692 5584 4.759183 AGTTCTCAACTTTTCATGCCTCTC 59.241 41.667 0.00 0.00 39.04 3.20
3953 7477 4.844085 TCAGATTGTCAGTAGAAAAGGGGA 59.156 41.667 0.00 0.00 0.00 4.81
3967 7491 7.175347 AGAAAAGGGGAAATGCTATTTTCTC 57.825 36.000 5.20 3.90 40.93 2.87
4040 7564 8.362464 TCTTGGTTACATAGTTACTCTGTCAT 57.638 34.615 6.67 0.00 0.00 3.06
4059 7584 8.355913 TCTGTCATATGTAGCAGTCTAGAAATG 58.644 37.037 17.39 0.00 0.00 2.32
4076 7602 1.915141 ATGAAGTTGCAACTCCCAGG 58.085 50.000 31.20 0.00 38.57 4.45
4091 7617 7.633553 GCAACTCCCAGGATTAAGCAAAATATT 60.634 37.037 0.00 0.00 0.00 1.28
4133 7659 7.929785 CCATTTCCTTCTTGCTGCATATTATTT 59.070 33.333 1.84 0.00 0.00 1.40
4173 7699 3.514309 TGTGCTTCTTAACTACTCCCTCC 59.486 47.826 0.00 0.00 0.00 4.30
4180 7706 0.115745 AACTACTCCCTCCGTCCCAA 59.884 55.000 0.00 0.00 0.00 4.12
4182 7708 1.272807 CTACTCCCTCCGTCCCAAAA 58.727 55.000 0.00 0.00 0.00 2.44
4185 7711 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
4186 7712 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
4187 7713 2.238898 CTCCCTCCGTCCCAAAATAAGT 59.761 50.000 0.00 0.00 0.00 2.24
4189 7715 2.290705 CCCTCCGTCCCAAAATAAGTGT 60.291 50.000 0.00 0.00 0.00 3.55
4190 7716 3.007635 CCTCCGTCCCAAAATAAGTGTC 58.992 50.000 0.00 0.00 0.00 3.67
4191 7717 3.307480 CCTCCGTCCCAAAATAAGTGTCT 60.307 47.826 0.00 0.00 0.00 3.41
4192 7718 3.933332 CTCCGTCCCAAAATAAGTGTCTC 59.067 47.826 0.00 0.00 0.00 3.36
4193 7719 3.325425 TCCGTCCCAAAATAAGTGTCTCA 59.675 43.478 0.00 0.00 0.00 3.27
4194 7720 4.069304 CCGTCCCAAAATAAGTGTCTCAA 58.931 43.478 0.00 0.00 0.00 3.02
4195 7721 4.083484 CCGTCCCAAAATAAGTGTCTCAAC 60.083 45.833 0.00 0.00 0.00 3.18
4196 7722 4.083484 CGTCCCAAAATAAGTGTCTCAACC 60.083 45.833 0.00 0.00 0.00 3.77
4197 7723 5.070685 GTCCCAAAATAAGTGTCTCAACCT 58.929 41.667 0.00 0.00 0.00 3.50
4198 7724 5.535030 GTCCCAAAATAAGTGTCTCAACCTT 59.465 40.000 0.00 0.00 0.00 3.50
4199 7725 6.713450 GTCCCAAAATAAGTGTCTCAACCTTA 59.287 38.462 0.00 0.00 0.00 2.69
4200 7726 6.940298 TCCCAAAATAAGTGTCTCAACCTTAG 59.060 38.462 0.00 0.00 0.00 2.18
4201 7727 6.715264 CCCAAAATAAGTGTCTCAACCTTAGT 59.285 38.462 0.00 0.00 0.00 2.24
4202 7728 7.881232 CCCAAAATAAGTGTCTCAACCTTAGTA 59.119 37.037 0.00 0.00 0.00 1.82
4203 7729 8.718734 CCAAAATAAGTGTCTCAACCTTAGTAC 58.281 37.037 0.00 0.00 0.00 2.73
4204 7730 9.268268 CAAAATAAGTGTCTCAACCTTAGTACA 57.732 33.333 0.00 0.00 0.00 2.90
4205 7731 9.841295 AAAATAAGTGTCTCAACCTTAGTACAA 57.159 29.630 0.00 0.00 0.00 2.41
4206 7732 8.828688 AATAAGTGTCTCAACCTTAGTACAAC 57.171 34.615 0.00 0.00 0.00 3.32
4207 7733 6.481434 AAGTGTCTCAACCTTAGTACAACT 57.519 37.500 0.00 0.00 0.00 3.16
4208 7734 6.481434 AGTGTCTCAACCTTAGTACAACTT 57.519 37.500 0.00 0.00 0.00 2.66
4209 7735 6.885922 AGTGTCTCAACCTTAGTACAACTTT 58.114 36.000 0.00 0.00 0.00 2.66
4210 7736 6.761714 AGTGTCTCAACCTTAGTACAACTTTG 59.238 38.462 0.00 0.00 0.00 2.77
4211 7737 6.537660 GTGTCTCAACCTTAGTACAACTTTGT 59.462 38.462 0.00 0.00 44.86 2.83
4212 7738 7.707893 GTGTCTCAACCTTAGTACAACTTTGTA 59.292 37.037 0.00 0.00 42.35 2.41
4236 7762 7.363205 ACTAGAGTTAGTACAAAGTCGAGAC 57.637 40.000 0.00 0.00 38.35 3.36
4237 7763 6.933521 ACTAGAGTTAGTACAAAGTCGAGACA 59.066 38.462 5.99 0.00 38.35 3.41
4238 7764 5.999721 AGAGTTAGTACAAAGTCGAGACAC 58.000 41.667 5.99 0.00 34.58 3.67
4239 7765 5.764192 AGAGTTAGTACAAAGTCGAGACACT 59.236 40.000 5.99 2.70 34.58 3.55
4244 7770 9.189723 GTTAGTACAAAGTCGAGACACTTATTT 57.810 33.333 5.99 0.00 35.45 1.40
4369 8012 5.841957 ATGCTGGATTTTGATGAGTTACC 57.158 39.130 0.00 0.00 0.00 2.85
4375 8018 9.236006 GCTGGATTTTGATGAGTTACCATATAT 57.764 33.333 0.00 0.00 0.00 0.86
4412 8055 7.691993 TCCTTTTCAGGCTATAAGGAACTAT 57.308 36.000 17.07 0.00 42.26 2.12
4451 8094 2.399607 TTGGAACAGCCCCCAGGTT 61.400 57.895 0.00 0.00 42.39 3.50
4479 8122 6.105333 ACTGACTCTCTTGACTGATTTATGC 58.895 40.000 0.00 0.00 0.00 3.14
4590 8235 3.000674 GTGAGCAAGTCATCACGAATACG 60.001 47.826 0.00 0.00 40.65 3.06
4614 8259 4.160814 AGCAACATAAATGCACACCATCAT 59.839 37.500 0.00 0.00 46.22 2.45
4722 8373 4.130118 AGAGTCTGTACAGTTGCTTTTGG 58.870 43.478 21.99 0.00 0.00 3.28
4736 8387 2.352127 GCTTTTGGGCAGTCAATCTGTC 60.352 50.000 0.00 0.00 46.91 3.51
4770 8421 9.429359 GTATACATCCTCTGGATAAAACATCAG 57.571 37.037 0.00 0.00 40.98 2.90
4788 8439 2.002586 CAGTGGCTTACATCTCCGTTG 58.997 52.381 0.00 0.00 0.00 4.10
4856 8507 5.957842 TGCCCAAGTTACATAAAGTTCTG 57.042 39.130 0.00 0.00 0.00 3.02
4904 8555 9.762933 ATTGCTTTACATTTTGTATGTCAGTTT 57.237 25.926 0.00 0.00 32.20 2.66
4947 8599 9.699410 ACCTTTACATTCAATTTCCATGATCTA 57.301 29.630 0.00 0.00 0.00 1.98
5036 8694 3.752747 TCATGCCTCAGTTATTGTGTGTG 59.247 43.478 0.00 0.00 0.00 3.82
5106 8764 6.201044 CAGGTACATTAGCTTATGCACTGTAC 59.799 42.308 12.50 20.25 42.73 2.90
5127 8785 9.729023 CTGTACTATCAGAAATGACTAACTCTG 57.271 37.037 0.00 0.00 37.61 3.35
5137 8795 6.491714 AATGACTAACTCTGCATCCATACT 57.508 37.500 0.00 0.00 0.00 2.12
5371 9030 0.736053 GTTTGGTGGCACAGTTTCGA 59.264 50.000 20.82 0.00 41.80 3.71
5518 9178 5.106157 GCATGTTACCTTATGCAACTCTGTT 60.106 40.000 0.00 0.00 46.72 3.16
5561 9221 1.206610 TGCTTCCTTTTTGTGCTGCAA 59.793 42.857 2.77 0.00 34.87 4.08
5584 9244 0.548510 GGCTTGGCAGAGGATACCTT 59.451 55.000 0.00 0.00 31.76 3.50
5796 9577 9.214957 TGTTGATGTAGAACTTTTATTCGTCAT 57.785 29.630 0.00 0.00 33.57 3.06
5860 9647 8.107095 AGTCTACCATTTTTATTGCTTCCAGTA 58.893 33.333 0.00 0.00 0.00 2.74
5865 9652 8.034804 ACCATTTTTATTGCTTCCAGTATTCAC 58.965 33.333 0.00 0.00 0.00 3.18
5971 9869 5.233902 CAGCATGATGTGTCTAGAAGCTTAC 59.766 44.000 1.88 0.00 39.69 2.34
6038 9937 1.680735 GTCAACACCCACTGAAATGCA 59.319 47.619 0.00 0.00 0.00 3.96
6128 10031 7.067008 GGCAGCTGTAATATTTCAGTTCCTTTA 59.933 37.037 16.64 0.00 34.57 1.85
6167 10092 9.450807 GTACAATTTTATTATGTGTGCATCTCC 57.549 33.333 0.00 0.00 36.58 3.71
6174 10099 6.942532 ATTATGTGTGCATCTCCGTATTTT 57.057 33.333 0.00 0.00 36.58 1.82
6175 10100 6.751514 TTATGTGTGCATCTCCGTATTTTT 57.248 33.333 0.00 0.00 36.58 1.94
6194 10119 2.418368 TTGACTGTGGTTGTTGCTCT 57.582 45.000 0.00 0.00 0.00 4.09
6205 10130 3.326747 GTTGTTGCTCTGGTAGATCGTT 58.673 45.455 0.00 0.00 0.00 3.85
6233 10159 5.489792 ACTGAGATGTCCTGTAATGTTGT 57.510 39.130 0.00 0.00 0.00 3.32
6238 10164 8.267620 TGAGATGTCCTGTAATGTTGTTATTG 57.732 34.615 0.00 0.00 0.00 1.90
6253 10180 1.656587 TATTGTCTGGTGTCAGGGCT 58.343 50.000 0.00 0.00 41.23 5.19
6272 10199 8.502738 TCAGGGCTTAACTTCAAATAGGAATAT 58.497 33.333 0.00 0.00 0.00 1.28
6274 10201 8.728098 AGGGCTTAACTTCAAATAGGAATATCT 58.272 33.333 0.00 0.00 0.00 1.98
6275 10202 8.787852 GGGCTTAACTTCAAATAGGAATATCTG 58.212 37.037 0.00 0.00 0.00 2.90
6276 10203 9.561069 GGCTTAACTTCAAATAGGAATATCTGA 57.439 33.333 0.00 0.00 0.00 3.27
6300 10247 3.348647 TGGGATCTTGATTTTGCGAGA 57.651 42.857 0.00 0.00 33.04 4.04
6305 10252 5.702670 GGGATCTTGATTTTGCGAGATATCA 59.297 40.000 5.32 0.00 38.76 2.15
6306 10253 6.348050 GGGATCTTGATTTTGCGAGATATCAC 60.348 42.308 5.32 0.00 38.76 3.06
6308 10255 7.600375 GGATCTTGATTTTGCGAGATATCACTA 59.400 37.037 5.32 0.00 38.76 2.74
6310 10257 8.357796 TCTTGATTTTGCGAGATATCACTAAG 57.642 34.615 5.32 0.00 0.00 2.18
6315 10262 8.723942 ATTTTGCGAGATATCACTAAGAACTT 57.276 30.769 5.32 0.00 0.00 2.66
6317 10264 5.592054 TGCGAGATATCACTAAGAACTTGG 58.408 41.667 5.32 0.00 0.00 3.61
6318 10265 5.127194 TGCGAGATATCACTAAGAACTTGGT 59.873 40.000 5.32 0.00 34.49 3.67
6319 10266 6.043411 GCGAGATATCACTAAGAACTTGGTT 58.957 40.000 5.32 0.00 31.71 3.67
6328 10275 9.930693 ATCACTAAGAACTTGGTTAACTAAGAG 57.069 33.333 31.26 21.40 37.79 2.85
6329 10276 8.921205 TCACTAAGAACTTGGTTAACTAAGAGT 58.079 33.333 31.26 21.93 37.79 3.24
6330 10277 9.543783 CACTAAGAACTTGGTTAACTAAGAGTT 57.456 33.333 31.26 20.06 37.79 3.01
6331 10278 9.761504 ACTAAGAACTTGGTTAACTAAGAGTTC 57.238 33.333 31.26 25.40 39.51 3.01
6332 10279 9.205719 CTAAGAACTTGGTTAACTAAGAGTTCC 57.794 37.037 31.26 17.01 42.25 3.62
6333 10280 7.376335 AGAACTTGGTTAACTAAGAGTTCCT 57.624 36.000 31.26 18.47 42.25 3.36
6334 10281 7.217906 AGAACTTGGTTAACTAAGAGTTCCTG 58.782 38.462 31.26 9.59 42.25 3.86
6335 10282 5.866207 ACTTGGTTAACTAAGAGTTCCTGG 58.134 41.667 31.26 8.96 39.51 4.45
6336 10283 5.368816 ACTTGGTTAACTAAGAGTTCCTGGT 59.631 40.000 31.26 9.53 39.51 4.00
6337 10284 5.223449 TGGTTAACTAAGAGTTCCTGGTG 57.777 43.478 5.42 0.00 39.51 4.17
6344 10310 1.915141 AGAGTTCCTGGTGGCATTTG 58.085 50.000 0.00 0.00 0.00 2.32
6346 10312 1.963515 GAGTTCCTGGTGGCATTTGTT 59.036 47.619 0.00 0.00 0.00 2.83
6375 10341 1.358152 TATATAGGCACCCACCCTGC 58.642 55.000 0.00 0.00 33.88 4.85
6380 10346 3.702048 GCACCCACCCTGCGTAGA 61.702 66.667 0.53 0.00 0.00 2.59
6389 10355 2.688446 CACCCTGCGTAGATTGAGACTA 59.312 50.000 0.53 0.00 0.00 2.59
6390 10356 2.952978 ACCCTGCGTAGATTGAGACTAG 59.047 50.000 0.53 0.00 0.00 2.57
6401 10367 4.469227 AGATTGAGACTAGAATGCTGGTGT 59.531 41.667 0.00 0.00 35.81 4.16
6537 10503 8.549338 AAGTGGAACATAAAAACTAGTCTAGC 57.451 34.615 6.81 0.00 44.52 3.42
6538 10504 7.908453 AGTGGAACATAAAAACTAGTCTAGCT 58.092 34.615 6.81 0.00 44.52 3.32
6582 10553 6.267471 TGAAATGCCTCCTTTTGTTAAGATGT 59.733 34.615 0.00 0.00 0.00 3.06
6661 10635 2.433318 GAGTGCGCCCTCAGTGTC 60.433 66.667 15.41 0.00 0.00 3.67
6731 10729 0.776810 TGGAAATGGGCCAGTCTTGA 59.223 50.000 13.78 0.00 0.00 3.02
6733 10731 2.225343 TGGAAATGGGCCAGTCTTGATT 60.225 45.455 13.78 0.00 0.00 2.57
6761 10759 7.669427 ACCATATCTTTGTCAAAATCAGCAAA 58.331 30.769 0.00 0.00 0.00 3.68
6762 10760 8.149647 ACCATATCTTTGTCAAAATCAGCAAAA 58.850 29.630 0.00 0.00 31.61 2.44
6784 10782 4.232221 ACGTAACTATGGAGTTTGTGACG 58.768 43.478 8.53 8.53 43.70 4.35
6801 10799 0.036164 ACGTCCTTGCTGTTATGCCA 59.964 50.000 0.00 0.00 0.00 4.92
6803 10801 2.093181 ACGTCCTTGCTGTTATGCCATA 60.093 45.455 0.00 0.00 0.00 2.74
6829 10828 4.531854 TGCAGCTACCTTTGCCATATTTA 58.468 39.130 0.00 0.00 39.54 1.40
6898 10897 1.806542 CACAAACATTGGGAGAGGTCG 59.193 52.381 0.00 0.00 35.62 4.79
6956 10955 6.641314 GGTACTTGTGATACTGATGATAACGG 59.359 42.308 0.00 0.00 0.00 4.44
7024 11129 5.731957 TTGTTGTATGCCACTGAGTACTA 57.268 39.130 0.00 0.00 0.00 1.82
7064 11169 5.556915 TGTAAGGTCAATGATTCCGAAAGT 58.443 37.500 0.00 0.00 0.00 2.66
7085 11190 0.594796 CACCTGTCAAAGCAAACGCC 60.595 55.000 0.00 0.00 0.00 5.68
7200 11305 3.058777 CGGCCTTTGTATAAACACAACGT 60.059 43.478 0.00 0.00 38.12 3.99
7208 11313 2.863132 TAAACACAACGTATGGGCCT 57.137 45.000 4.53 0.00 35.04 5.19
7224 11329 0.811281 GCCTGTGTTCTTGGTATGCC 59.189 55.000 0.00 0.00 0.00 4.40
7254 11359 2.829120 ACTTCTACTCCTCTTGGTCTGC 59.171 50.000 0.00 0.00 34.23 4.26
7262 11368 2.563179 TCCTCTTGGTCTGCTGTCTTAC 59.437 50.000 0.00 0.00 34.23 2.34
7279 11385 6.750148 TGTCTTACAAGTGTTGTTGGTTTTT 58.250 32.000 0.00 0.00 42.22 1.94
7360 11468 1.587054 GGCTGGCTAGACGCGATAT 59.413 57.895 15.93 0.00 40.44 1.63
7448 11557 8.339344 TGATCAATGATGTCTTGTTGTATGTT 57.661 30.769 0.00 0.00 0.00 2.71
7503 11612 9.729281 TGTATATCAATATGCATTCTGTGTCAT 57.271 29.630 3.54 0.00 31.77 3.06
7539 11648 6.208599 CCCACCACAGTTGATTTTTATGTACT 59.791 38.462 0.00 0.00 0.00 2.73
7619 11732 3.767230 CCGAATCATAGGCGCGCG 61.767 66.667 28.44 28.44 0.00 6.86
7620 11733 3.030308 CGAATCATAGGCGCGCGT 61.030 61.111 32.35 30.14 0.00 6.01
7717 11837 7.546358 AGAAGATGAGTCTGTACTTTCATCTG 58.454 38.462 21.44 0.00 42.30 2.90
7810 11949 2.691011 TGTCCAAGTTGTACCTTTTGGC 59.309 45.455 12.18 9.18 45.59 4.52
7817 11956 2.270352 TGTACCTTTTGGCTGTCTGG 57.730 50.000 0.00 0.00 45.59 3.86
7819 11958 2.173782 TGTACCTTTTGGCTGTCTGGAA 59.826 45.455 0.00 0.00 45.59 3.53
7825 11964 1.679139 TTGGCTGTCTGGAACACTTG 58.321 50.000 0.00 0.00 33.24 3.16
7831 11971 3.388308 CTGTCTGGAACACTTGTCTCTG 58.612 50.000 0.00 0.00 33.24 3.35
7840 11980 6.151312 TGGAACACTTGTCTCTGTCTATCTAC 59.849 42.308 0.00 0.00 0.00 2.59
7843 11983 6.477253 ACACTTGTCTCTGTCTATCTACTCA 58.523 40.000 0.00 0.00 0.00 3.41
7844 11984 6.597672 ACACTTGTCTCTGTCTATCTACTCAG 59.402 42.308 0.00 0.00 0.00 3.35
7956 12133 4.292977 AGTCCAAGAAAAAGAAACTGCG 57.707 40.909 0.00 0.00 0.00 5.18
8065 13161 8.907222 AACAAAAATCAAATAAGAATGTGCCT 57.093 26.923 0.00 0.00 0.00 4.75
8066 13162 8.907222 ACAAAAATCAAATAAGAATGTGCCTT 57.093 26.923 0.00 0.00 0.00 4.35
8067 13163 9.341078 ACAAAAATCAAATAAGAATGTGCCTTT 57.659 25.926 0.00 0.00 0.00 3.11
8107 13205 7.601073 TGTGAATGTTCTCAAGACATGTATC 57.399 36.000 0.00 0.00 0.00 2.24
8110 13208 6.314648 TGAATGTTCTCAAGACATGTATCTGC 59.685 38.462 0.00 0.00 0.00 4.26
8117 13215 4.284490 TCAAGACATGTATCTGCTATCCCC 59.716 45.833 0.00 0.00 0.00 4.81
8119 13217 4.433255 AGACATGTATCTGCTATCCCCAT 58.567 43.478 0.00 0.00 0.00 4.00
8120 13218 5.593786 AGACATGTATCTGCTATCCCCATA 58.406 41.667 0.00 0.00 0.00 2.74
8121 13219 6.208279 AGACATGTATCTGCTATCCCCATAT 58.792 40.000 0.00 0.00 0.00 1.78
8122 13220 7.365426 AGACATGTATCTGCTATCCCCATATA 58.635 38.462 0.00 0.00 0.00 0.86
8123 13221 8.015456 AGACATGTATCTGCTATCCCCATATAT 58.985 37.037 0.00 0.00 0.00 0.86
8124 13222 8.572884 ACATGTATCTGCTATCCCCATATATT 57.427 34.615 0.00 0.00 0.00 1.28
8125 13223 9.007494 ACATGTATCTGCTATCCCCATATATTT 57.993 33.333 0.00 0.00 0.00 1.40
8126 13224 9.499479 CATGTATCTGCTATCCCCATATATTTC 57.501 37.037 0.00 0.00 0.00 2.17
8127 13225 8.622572 TGTATCTGCTATCCCCATATATTTCA 57.377 34.615 0.00 0.00 0.00 2.69
8128 13226 9.056799 TGTATCTGCTATCCCCATATATTTCAA 57.943 33.333 0.00 0.00 0.00 2.69
8129 13227 9.905713 GTATCTGCTATCCCCATATATTTCAAA 57.094 33.333 0.00 0.00 0.00 2.69
8131 13229 9.638176 ATCTGCTATCCCCATATATTTCAAATC 57.362 33.333 0.00 0.00 0.00 2.17
8132 13230 8.839745 TCTGCTATCCCCATATATTTCAAATCT 58.160 33.333 0.00 0.00 0.00 2.40
8280 13378 6.165577 ACTTTTGTTTCTCTGTGTGCATTTT 58.834 32.000 0.00 0.00 0.00 1.82
8300 13398 9.161684 GCATTTTGAATTTGAACATGAACTTTC 57.838 29.630 0.00 0.00 0.00 2.62
8435 13534 2.553028 GCACCTGATTCTTTCCCAGTCA 60.553 50.000 0.00 0.00 0.00 3.41
8503 13602 3.702045 ACCCTTGAGAATCTCCTAGTTCG 59.298 47.826 7.91 0.00 34.92 3.95
8552 13651 2.423373 GGTGGTGCCCAGAATGATACAT 60.423 50.000 0.00 0.00 39.69 2.29
8572 13672 5.348164 ACATGTTCAACTTAAACAAGTGCC 58.652 37.500 0.00 0.00 39.84 5.01
8666 13770 3.450904 AGGTGCCATACTCAAGAACCTA 58.549 45.455 0.00 0.00 34.84 3.08
8693 13797 5.431179 TCCTAATGGACACCCTAAAAGAC 57.569 43.478 0.00 0.00 37.46 3.01
8700 13804 6.110411 TGGACACCCTAAAAGACTAGAAAG 57.890 41.667 0.00 0.00 0.00 2.62
8708 13812 8.322828 ACCCTAAAAGACTAGAAAGAAGATTCC 58.677 37.037 0.00 0.00 0.00 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
78 81 9.376075 TGCATGTTTGATCAAGTTTTTAGAAAA 57.624 25.926 8.41 0.00 0.00 2.29
204 207 4.602159 GTCCGCGGACAAATACCA 57.398 55.556 44.88 13.64 44.02 3.25
224 227 3.402681 CCGGACACCAGCCTGGAT 61.403 66.667 19.90 4.65 40.96 3.41
228 231 1.305802 TATGTCCGGACACCAGCCT 60.306 57.895 38.46 23.82 45.05 4.58
230 233 0.753262 ATCTATGTCCGGACACCAGC 59.247 55.000 38.46 10.26 45.05 4.85
246 249 1.460305 ATGGCCGCCTCCTGTATCT 60.460 57.895 11.61 0.00 0.00 1.98
265 268 5.938125 ACGGATATTTGAGGTATATGGTTGC 59.062 40.000 0.00 0.00 0.00 4.17
304 308 7.462724 CGGAAGAATTTGGCGAAATATTGTTTC 60.463 37.037 7.14 1.45 31.18 2.78
311 315 2.750166 TGCGGAAGAATTTGGCGAAATA 59.250 40.909 7.14 0.00 31.18 1.40
341 345 3.104843 TGTAACATGTTGGCAAAAGGC 57.895 42.857 21.42 0.00 43.74 4.35
381 385 9.515226 AGCAAGGTGATTAGTTGTTTATTAAGA 57.485 29.630 0.00 0.00 0.00 2.10
386 390 9.461312 TGATTAGCAAGGTGATTAGTTGTTTAT 57.539 29.630 0.00 0.00 0.00 1.40
436 443 5.941555 TGGTGTAAGGTTTGAAAATGGTT 57.058 34.783 0.00 0.00 0.00 3.67
438 445 6.293353 GCATTTGGTGTAAGGTTTGAAAATGG 60.293 38.462 0.00 0.00 35.39 3.16
456 463 5.534207 TGCAAATAGATTAGGGCATTTGG 57.466 39.130 7.70 0.00 38.32 3.28
466 473 7.139896 TGACGAAAGCTTTGCAAATAGATTA 57.860 32.000 18.30 0.00 0.00 1.75
481 488 0.239879 TTTGGCGGAATGACGAAAGC 59.760 50.000 0.00 0.00 35.47 3.51
485 492 1.301087 ACGTTTGGCGGAATGACGA 60.301 52.632 0.94 0.00 46.52 4.20
496 503 5.432885 AAGGTTCTTTATCACACGTTTGG 57.567 39.130 1.18 0.00 0.00 3.28
529 536 7.431249 ACTTCTTGCCATATGATTAGCATTTG 58.569 34.615 3.65 0.00 38.44 2.32
530 537 7.592885 ACTTCTTGCCATATGATTAGCATTT 57.407 32.000 3.65 0.00 38.44 2.32
531 538 7.720957 TGTACTTCTTGCCATATGATTAGCATT 59.279 33.333 3.65 0.00 38.44 3.56
532 539 7.173907 GTGTACTTCTTGCCATATGATTAGCAT 59.826 37.037 3.65 0.00 41.08 3.79
533 540 6.483307 GTGTACTTCTTGCCATATGATTAGCA 59.517 38.462 3.65 2.00 0.00 3.49
534 541 6.073003 GGTGTACTTCTTGCCATATGATTAGC 60.073 42.308 3.65 0.00 0.00 3.09
535 542 7.220030 AGGTGTACTTCTTGCCATATGATTAG 58.780 38.462 3.65 0.00 0.00 1.73
536 543 7.136822 AGGTGTACTTCTTGCCATATGATTA 57.863 36.000 3.65 0.00 0.00 1.75
537 544 6.006275 AGGTGTACTTCTTGCCATATGATT 57.994 37.500 3.65 0.00 0.00 2.57
538 545 5.636903 AGGTGTACTTCTTGCCATATGAT 57.363 39.130 3.65 0.00 0.00 2.45
539 546 5.435686 AAGGTGTACTTCTTGCCATATGA 57.564 39.130 3.65 0.00 32.85 2.15
563 570 8.568676 TTTCGAACAGATTTGGGTATTTGATA 57.431 30.769 0.00 0.00 0.00 2.15
564 571 7.461182 TTTCGAACAGATTTGGGTATTTGAT 57.539 32.000 0.00 0.00 0.00 2.57
587 594 5.366477 ACATCCATTTGAGGGACAAGTTTTT 59.634 36.000 0.00 0.00 39.77 1.94
588 595 4.901250 ACATCCATTTGAGGGACAAGTTTT 59.099 37.500 0.00 0.00 39.77 2.43
589 596 4.482990 ACATCCATTTGAGGGACAAGTTT 58.517 39.130 0.00 0.00 39.77 2.66
590 597 4.118168 ACATCCATTTGAGGGACAAGTT 57.882 40.909 0.00 0.00 39.77 2.66
591 598 3.814504 ACATCCATTTGAGGGACAAGT 57.185 42.857 0.00 0.00 39.77 3.16
592 599 5.688807 AGATACATCCATTTGAGGGACAAG 58.311 41.667 0.00 0.00 39.77 3.16
593 600 5.715439 AGATACATCCATTTGAGGGACAA 57.285 39.130 0.00 0.00 37.23 3.18
594 601 5.307976 CCTAGATACATCCATTTGAGGGACA 59.692 44.000 0.00 0.00 37.23 4.02
595 602 5.544176 TCCTAGATACATCCATTTGAGGGAC 59.456 44.000 0.00 0.00 37.23 4.46
596 603 5.544176 GTCCTAGATACATCCATTTGAGGGA 59.456 44.000 0.00 0.00 39.14 4.20
597 604 5.280215 GGTCCTAGATACATCCATTTGAGGG 60.280 48.000 0.00 0.00 0.00 4.30
598 605 5.307976 TGGTCCTAGATACATCCATTTGAGG 59.692 44.000 0.00 0.00 0.00 3.86
599 606 6.425210 TGGTCCTAGATACATCCATTTGAG 57.575 41.667 0.00 0.00 0.00 3.02
600 607 6.386927 ACTTGGTCCTAGATACATCCATTTGA 59.613 38.462 7.38 0.00 0.00 2.69
601 608 6.595682 ACTTGGTCCTAGATACATCCATTTG 58.404 40.000 7.38 0.00 0.00 2.32
602 609 6.831664 ACTTGGTCCTAGATACATCCATTT 57.168 37.500 7.38 0.00 0.00 2.32
603 610 6.831664 AACTTGGTCCTAGATACATCCATT 57.168 37.500 7.38 0.00 0.00 3.16
604 611 7.076446 ACTAACTTGGTCCTAGATACATCCAT 58.924 38.462 7.38 0.00 0.00 3.41
605 612 6.441222 ACTAACTTGGTCCTAGATACATCCA 58.559 40.000 7.38 0.00 0.00 3.41
606 613 6.980416 ACTAACTTGGTCCTAGATACATCC 57.020 41.667 7.38 0.00 0.00 3.51
616 623 9.091220 GGATGTATCTATTACTAACTTGGTCCT 57.909 37.037 0.00 0.00 0.00 3.85
617 624 8.867097 TGGATGTATCTATTACTAACTTGGTCC 58.133 37.037 0.00 0.00 0.00 4.46
631 638 9.911788 ACTTGTCTTTCAAATGGATGTATCTAT 57.088 29.630 0.00 0.00 35.48 1.98
632 639 9.739276 AACTTGTCTTTCAAATGGATGTATCTA 57.261 29.630 0.00 0.00 35.48 1.98
633 640 8.641498 AACTTGTCTTTCAAATGGATGTATCT 57.359 30.769 0.00 0.00 35.48 1.98
634 641 9.132521 CAAACTTGTCTTTCAAATGGATGTATC 57.867 33.333 0.00 0.00 35.48 2.24
635 642 8.090214 CCAAACTTGTCTTTCAAATGGATGTAT 58.910 33.333 0.00 0.00 36.92 2.29
636 643 7.432869 CCAAACTTGTCTTTCAAATGGATGTA 58.567 34.615 0.00 0.00 36.92 2.29
637 644 6.282930 CCAAACTTGTCTTTCAAATGGATGT 58.717 36.000 0.00 0.00 36.92 3.06
638 645 5.697633 CCCAAACTTGTCTTTCAAATGGATG 59.302 40.000 0.00 0.00 36.92 3.51
639 646 5.602145 TCCCAAACTTGTCTTTCAAATGGAT 59.398 36.000 0.00 0.00 36.92 3.41
640 647 4.959210 TCCCAAACTTGTCTTTCAAATGGA 59.041 37.500 0.00 0.00 36.92 3.41
641 648 5.049828 GTCCCAAACTTGTCTTTCAAATGG 58.950 41.667 0.00 0.00 35.48 3.16
642 649 5.659463 TGTCCCAAACTTGTCTTTCAAATG 58.341 37.500 0.00 0.00 35.48 2.32
643 650 5.930837 TGTCCCAAACTTGTCTTTCAAAT 57.069 34.783 0.00 0.00 35.48 2.32
644 651 5.245075 ACTTGTCCCAAACTTGTCTTTCAAA 59.755 36.000 0.00 0.00 35.48 2.69
645 652 4.770010 ACTTGTCCCAAACTTGTCTTTCAA 59.230 37.500 0.00 0.00 34.61 2.69
646 653 4.340617 ACTTGTCCCAAACTTGTCTTTCA 58.659 39.130 0.00 0.00 0.00 2.69
647 654 4.983671 ACTTGTCCCAAACTTGTCTTTC 57.016 40.909 0.00 0.00 0.00 2.62
648 655 5.738619 AAACTTGTCCCAAACTTGTCTTT 57.261 34.783 0.00 0.00 0.00 2.52
649 656 5.738619 AAAACTTGTCCCAAACTTGTCTT 57.261 34.783 0.00 0.00 0.00 3.01
650 657 5.480422 AGAAAAACTTGTCCCAAACTTGTCT 59.520 36.000 0.00 0.00 0.00 3.41
651 658 5.720202 AGAAAAACTTGTCCCAAACTTGTC 58.280 37.500 0.00 0.00 0.00 3.18
652 659 5.621329 CGAGAAAAACTTGTCCCAAACTTGT 60.621 40.000 0.00 0.00 0.00 3.16
653 660 4.798387 CGAGAAAAACTTGTCCCAAACTTG 59.202 41.667 0.00 0.00 0.00 3.16
654 661 4.142249 CCGAGAAAAACTTGTCCCAAACTT 60.142 41.667 0.00 0.00 0.00 2.66
655 662 3.380320 CCGAGAAAAACTTGTCCCAAACT 59.620 43.478 0.00 0.00 0.00 2.66
656 663 3.379057 TCCGAGAAAAACTTGTCCCAAAC 59.621 43.478 0.00 0.00 0.00 2.93
657 664 3.379057 GTCCGAGAAAAACTTGTCCCAAA 59.621 43.478 0.00 0.00 0.00 3.28
658 665 2.946990 GTCCGAGAAAAACTTGTCCCAA 59.053 45.455 0.00 0.00 0.00 4.12
659 666 2.567985 GTCCGAGAAAAACTTGTCCCA 58.432 47.619 0.00 0.00 0.00 4.37
660 667 1.529865 CGTCCGAGAAAAACTTGTCCC 59.470 52.381 0.00 0.00 0.00 4.46
661 668 2.476821 TCGTCCGAGAAAAACTTGTCC 58.523 47.619 0.00 0.00 0.00 4.02
662 669 3.059800 CCTTCGTCCGAGAAAAACTTGTC 60.060 47.826 0.00 0.00 0.00 3.18
663 670 2.870411 CCTTCGTCCGAGAAAAACTTGT 59.130 45.455 0.00 0.00 0.00 3.16
664 671 2.223377 CCCTTCGTCCGAGAAAAACTTG 59.777 50.000 0.00 0.00 0.00 3.16
665 672 2.103601 TCCCTTCGTCCGAGAAAAACTT 59.896 45.455 0.00 0.00 0.00 2.66
666 673 1.690352 TCCCTTCGTCCGAGAAAAACT 59.310 47.619 0.00 0.00 0.00 2.66
667 674 2.067013 CTCCCTTCGTCCGAGAAAAAC 58.933 52.381 0.00 0.00 0.00 2.43
668 675 1.690352 ACTCCCTTCGTCCGAGAAAAA 59.310 47.619 0.00 0.00 0.00 1.94
669 676 1.335145 ACTCCCTTCGTCCGAGAAAA 58.665 50.000 0.00 0.00 0.00 2.29
670 677 2.205022 TACTCCCTTCGTCCGAGAAA 57.795 50.000 0.00 0.00 0.00 2.52
671 678 2.431954 ATACTCCCTTCGTCCGAGAA 57.568 50.000 0.00 0.00 0.00 2.87
672 679 2.426024 CAAATACTCCCTTCGTCCGAGA 59.574 50.000 0.00 0.00 0.00 4.04
673 680 2.810650 CAAATACTCCCTTCGTCCGAG 58.189 52.381 0.00 0.00 0.00 4.63
674 681 1.134907 GCAAATACTCCCTTCGTCCGA 60.135 52.381 0.00 0.00 0.00 4.55
675 682 1.287425 GCAAATACTCCCTTCGTCCG 58.713 55.000 0.00 0.00 0.00 4.79
676 683 2.396590 TGCAAATACTCCCTTCGTCC 57.603 50.000 0.00 0.00 0.00 4.79
677 684 3.426292 GCTTTGCAAATACTCCCTTCGTC 60.426 47.826 13.23 0.00 0.00 4.20
678 685 2.488153 GCTTTGCAAATACTCCCTTCGT 59.512 45.455 13.23 0.00 0.00 3.85
679 686 2.749621 AGCTTTGCAAATACTCCCTTCG 59.250 45.455 13.23 0.00 0.00 3.79
680 687 4.380973 GGAAGCTTTGCAAATACTCCCTTC 60.381 45.833 13.23 15.24 0.00 3.46
681 688 3.511540 GGAAGCTTTGCAAATACTCCCTT 59.488 43.478 13.23 8.36 0.00 3.95
682 689 3.092301 GGAAGCTTTGCAAATACTCCCT 58.908 45.455 13.23 0.00 0.00 4.20
683 690 2.159379 CGGAAGCTTTGCAAATACTCCC 60.159 50.000 13.23 9.75 0.00 4.30
684 691 3.136808 CGGAAGCTTTGCAAATACTCC 57.863 47.619 13.23 15.97 0.00 3.85
709 716 0.736636 GGCGGTTACTATTTGGGCAC 59.263 55.000 0.00 0.00 0.00 5.01
774 781 0.391661 GAATGGCAGAAGACCGCTGA 60.392 55.000 0.00 0.00 35.39 4.26
786 793 1.218047 CCTCTTCGTCGGAATGGCA 59.782 57.895 0.00 0.00 0.00 4.92
790 797 1.341778 ACCCTACCTCTTCGTCGGAAT 60.342 52.381 0.00 0.00 0.00 3.01
792 799 0.911769 TACCCTACCTCTTCGTCGGA 59.088 55.000 0.00 0.00 0.00 4.55
794 801 0.654683 CGTACCCTACCTCTTCGTCG 59.345 60.000 0.00 0.00 0.00 5.12
806 813 0.879765 CAAGAGTCGTCACGTACCCT 59.120 55.000 0.00 0.00 0.00 4.34
819 827 6.319048 ACATCCTCATGATAAACCAAGAGT 57.681 37.500 0.00 0.00 31.91 3.24
868 876 5.549742 TTTCCTGCAAATCAGAACCAAAT 57.450 34.783 0.00 0.00 45.72 2.32
876 884 4.240096 GGATGTGTTTTCCTGCAAATCAG 58.760 43.478 0.00 0.00 42.49 2.90
877 885 3.640498 TGGATGTGTTTTCCTGCAAATCA 59.360 39.130 0.00 0.00 32.45 2.57
885 893 2.026822 AGCGATCTGGATGTGTTTTCCT 60.027 45.455 0.00 0.00 34.17 3.36
894 902 2.609459 GGTACACAAAGCGATCTGGATG 59.391 50.000 0.00 0.00 0.00 3.51
927 937 6.780522 ACATAATTTACCAACCAACCAAGTCT 59.219 34.615 0.00 0.00 0.00 3.24
928 938 6.988522 ACATAATTTACCAACCAACCAAGTC 58.011 36.000 0.00 0.00 0.00 3.01
929 939 6.780522 AGACATAATTTACCAACCAACCAAGT 59.219 34.615 0.00 0.00 0.00 3.16
930 940 7.090173 CAGACATAATTTACCAACCAACCAAG 58.910 38.462 0.00 0.00 0.00 3.61
931 941 6.015010 CCAGACATAATTTACCAACCAACCAA 60.015 38.462 0.00 0.00 0.00 3.67
971 981 1.916206 TTCAAATCCCCCGCATCCGA 61.916 55.000 0.00 0.00 36.29 4.55
1000 1010 1.076332 GTGTTTTCGTGGGATCTCCG 58.924 55.000 0.00 0.00 38.76 4.63
1007 1017 2.920490 CAAACTTGTGTGTTTTCGTGGG 59.080 45.455 0.00 0.00 37.98 4.61
1065 2473 0.468029 CCAACTCCAACTGTGGGCTT 60.468 55.000 0.00 0.00 46.01 4.35
1067 2475 0.890996 CTCCAACTCCAACTGTGGGC 60.891 60.000 0.00 0.00 46.01 5.36
1068 2476 0.764890 TCTCCAACTCCAACTGTGGG 59.235 55.000 0.00 0.00 46.01 4.61
1081 2566 2.954684 AAGTGCGGGCGATCTCCAA 61.955 57.895 3.71 0.00 0.00 3.53
1083 2568 2.892425 CAAGTGCGGGCGATCTCC 60.892 66.667 0.00 0.00 0.00 3.71
1085 2570 2.125512 GTCAAGTGCGGGCGATCT 60.126 61.111 0.00 0.00 0.00 2.75
1086 2571 2.434185 TGTCAAGTGCGGGCGATC 60.434 61.111 0.00 0.00 0.00 3.69
1087 2572 2.434884 CTGTCAAGTGCGGGCGAT 60.435 61.111 0.00 0.00 0.00 4.58
1109 2594 3.610669 CCGGCGAGAGATCTGGGG 61.611 72.222 9.30 0.00 0.00 4.96
1517 3065 1.996786 TAAAGTAGAGGTCGCGGCGG 61.997 60.000 23.46 3.89 0.00 6.13
1518 3066 0.591741 CTAAAGTAGAGGTCGCGGCG 60.592 60.000 17.70 17.70 0.00 6.46
1519 3067 0.870735 GCTAAAGTAGAGGTCGCGGC 60.871 60.000 6.13 3.04 0.00 6.53
1520 3068 0.454600 TGCTAAAGTAGAGGTCGCGG 59.545 55.000 6.13 0.00 0.00 6.46
1521 3069 1.132643 ACTGCTAAAGTAGAGGTCGCG 59.867 52.381 0.00 0.00 37.36 5.87
1522 3070 2.424246 AGACTGCTAAAGTAGAGGTCGC 59.576 50.000 1.86 0.00 40.07 5.19
1561 3109 7.353414 ACATTAGAGATCTGCAACTAAGCTA 57.647 36.000 0.00 0.00 34.99 3.32
1808 3423 1.662360 CACACAGCACATTTCGTTCG 58.338 50.000 0.00 0.00 0.00 3.95
1809 3424 1.398595 GCACACAGCACATTTCGTTC 58.601 50.000 0.00 0.00 44.79 3.95
1810 3425 3.549997 GCACACAGCACATTTCGTT 57.450 47.368 0.00 0.00 44.79 3.85
1853 3468 2.832733 GGACCTATCCATGCCTACCTAC 59.167 54.545 0.00 0.00 45.47 3.18
1854 3469 3.185880 GGACCTATCCATGCCTACCTA 57.814 52.381 0.00 0.00 45.47 3.08
1855 3470 2.031495 GGACCTATCCATGCCTACCT 57.969 55.000 0.00 0.00 45.47 3.08
1869 3484 4.584638 TGCTACAATAAACCATGGACCT 57.415 40.909 21.47 4.39 0.00 3.85
1919 3542 3.018856 TGTCGGACGGTACTTGACATAT 58.981 45.455 3.34 0.00 34.85 1.78
1934 3557 0.108377 ACAGCGCAATGTATGTCGGA 60.108 50.000 11.47 0.00 0.00 4.55
1984 3607 1.201429 TCCAGCACCTTCCTCTTCCC 61.201 60.000 0.00 0.00 0.00 3.97
2000 3623 0.122435 ACCCCACCCCTCTTTATCCA 59.878 55.000 0.00 0.00 0.00 3.41
2024 3647 2.158959 CGGCGTCAACATCGAGGAC 61.159 63.158 3.06 1.56 0.00 3.85
2202 3844 3.726517 CTGCCCACCAACGCTTCG 61.727 66.667 0.00 0.00 0.00 3.79
2203 3845 2.193536 AACTGCCCACCAACGCTTC 61.194 57.895 0.00 0.00 0.00 3.86
2204 3846 2.123897 AACTGCCCACCAACGCTT 60.124 55.556 0.00 0.00 0.00 4.68
2205 3847 2.906897 CAACTGCCCACCAACGCT 60.907 61.111 0.00 0.00 0.00 5.07
2206 3848 3.977244 CCAACTGCCCACCAACGC 61.977 66.667 0.00 0.00 0.00 4.84
2207 3849 3.294493 CCCAACTGCCCACCAACG 61.294 66.667 0.00 0.00 0.00 4.10
2208 3850 2.917227 CCCCAACTGCCCACCAAC 60.917 66.667 0.00 0.00 0.00 3.77
2209 3851 4.232061 CCCCCAACTGCCCACCAA 62.232 66.667 0.00 0.00 0.00 3.67
2297 4152 3.121934 CAACAGGCTTGCAGTGCA 58.878 55.556 15.37 15.37 36.47 4.57
2313 4168 3.804036 AGTATATTAAGTTGGCGCTGCA 58.196 40.909 7.64 0.00 0.00 4.41
2417 4272 1.173043 CTTCACTGACGCTCCTCTCT 58.827 55.000 0.00 0.00 0.00 3.10
2426 4281 1.278172 CCACTGACGCTTCACTGACG 61.278 60.000 2.09 0.00 0.00 4.35
2432 4287 0.038251 CACTAGCCACTGACGCTTCA 60.038 55.000 0.00 0.00 37.79 3.02
2480 4336 1.900545 GCTACTTCTCCCGCCCACTT 61.901 60.000 0.00 0.00 0.00 3.16
2528 4384 5.574970 ACTATTTCCTCCATCCCATTCTC 57.425 43.478 0.00 0.00 0.00 2.87
2832 4698 7.492352 ACCGAATGCTTAAATGTTATACTCC 57.508 36.000 0.00 0.00 0.00 3.85
2910 4778 2.029918 GTCCTGGCTGAAATGGACAAAC 60.030 50.000 6.18 0.00 45.87 2.93
3121 4991 7.360861 GCGCTAATATATCTGCAAAATGTACCA 60.361 37.037 0.00 0.00 0.00 3.25
3509 5385 9.743057 CAACAATGTTAACAGTTTCCAATAGAA 57.257 29.630 14.65 0.00 0.00 2.10
3528 5404 8.087750 TCTCTTTGGTATAAAAAGGCAACAATG 58.912 33.333 8.55 0.00 35.71 2.82
3597 5473 5.118642 TCATGTGCGTTTCATTGATTTCA 57.881 34.783 0.00 0.00 0.00 2.69
3609 5489 6.039717 AGGCTTAAATGATATTCATGTGCGTT 59.960 34.615 0.00 0.00 37.15 4.84
3681 5572 5.965033 AAAGGATAAGAGAGAGGCATGAA 57.035 39.130 0.00 0.00 0.00 2.57
3953 7477 5.886960 AGCGACTTGAGAAAATAGCATTT 57.113 34.783 0.00 0.00 0.00 2.32
3967 7491 4.224433 TCGTAAGTTCAGTTAGCGACTTG 58.776 43.478 0.00 0.00 35.68 3.16
4040 7564 7.492669 GCAACTTCATTTCTAGACTGCTACATA 59.507 37.037 0.00 0.00 0.00 2.29
4047 7572 6.348050 GGAGTTGCAACTTCATTTCTAGACTG 60.348 42.308 31.58 0.00 39.88 3.51
4059 7584 2.206576 ATCCTGGGAGTTGCAACTTC 57.793 50.000 31.58 29.31 39.88 3.01
4133 7659 7.724061 AGAAGCACACCCTTATTCTTAAGAAAA 59.276 33.333 21.26 14.75 37.59 2.29
4173 7699 4.083484 GGTTGAGACACTTATTTTGGGACG 60.083 45.833 0.00 0.00 0.00 4.79
4180 7706 9.269453 GTTGTACTAAGGTTGAGACACTTATTT 57.731 33.333 0.00 0.00 0.00 1.40
4182 7708 8.191534 AGTTGTACTAAGGTTGAGACACTTAT 57.808 34.615 0.00 0.00 0.00 1.73
4185 7711 6.481434 AAGTTGTACTAAGGTTGAGACACT 57.519 37.500 0.00 0.00 0.00 3.55
4186 7712 6.537660 ACAAAGTTGTACTAAGGTTGAGACAC 59.462 38.462 0.00 0.00 40.16 3.67
4187 7713 6.646267 ACAAAGTTGTACTAAGGTTGAGACA 58.354 36.000 0.00 0.00 40.16 3.41
4211 7737 8.090831 TGTCTCGACTTTGTACTAACTCTAGTA 58.909 37.037 0.00 0.00 39.23 1.82
4212 7738 6.933521 TGTCTCGACTTTGTACTAACTCTAGT 59.066 38.462 0.00 0.00 41.43 2.57
4213 7739 7.118101 AGTGTCTCGACTTTGTACTAACTCTAG 59.882 40.741 0.00 0.00 0.00 2.43
4214 7740 6.933521 AGTGTCTCGACTTTGTACTAACTCTA 59.066 38.462 0.00 0.00 0.00 2.43
4215 7741 5.764192 AGTGTCTCGACTTTGTACTAACTCT 59.236 40.000 0.00 0.00 0.00 3.24
4216 7742 5.999721 AGTGTCTCGACTTTGTACTAACTC 58.000 41.667 0.00 0.00 0.00 3.01
4217 7743 6.388435 AAGTGTCTCGACTTTGTACTAACT 57.612 37.500 0.00 0.00 31.92 2.24
4218 7744 8.739649 AATAAGTGTCTCGACTTTGTACTAAC 57.260 34.615 0.00 0.00 37.38 2.34
4219 7745 9.754382 AAAATAAGTGTCTCGACTTTGTACTAA 57.246 29.630 0.00 0.00 37.38 2.24
4220 7746 9.188588 CAAAATAAGTGTCTCGACTTTGTACTA 57.811 33.333 0.00 0.00 37.38 1.82
4221 7747 7.170998 CCAAAATAAGTGTCTCGACTTTGTACT 59.829 37.037 0.00 0.00 37.38 2.73
4222 7748 7.288672 CCAAAATAAGTGTCTCGACTTTGTAC 58.711 38.462 0.00 0.00 37.38 2.90
4223 7749 6.425721 CCCAAAATAAGTGTCTCGACTTTGTA 59.574 38.462 0.00 0.00 37.38 2.41
4224 7750 5.238650 CCCAAAATAAGTGTCTCGACTTTGT 59.761 40.000 0.00 0.00 37.38 2.83
4225 7751 5.468746 TCCCAAAATAAGTGTCTCGACTTTG 59.531 40.000 0.00 0.61 37.38 2.77
4226 7752 5.469084 GTCCCAAAATAAGTGTCTCGACTTT 59.531 40.000 0.00 0.00 37.38 2.66
4227 7753 4.995487 GTCCCAAAATAAGTGTCTCGACTT 59.005 41.667 0.00 0.00 39.54 3.01
4228 7754 4.566987 GTCCCAAAATAAGTGTCTCGACT 58.433 43.478 0.00 0.00 0.00 4.18
4229 7755 3.367025 CGTCCCAAAATAAGTGTCTCGAC 59.633 47.826 0.00 0.00 0.00 4.20
4230 7756 3.581755 CGTCCCAAAATAAGTGTCTCGA 58.418 45.455 0.00 0.00 0.00 4.04
4231 7757 2.671396 CCGTCCCAAAATAAGTGTCTCG 59.329 50.000 0.00 0.00 0.00 4.04
4232 7758 3.933332 CTCCGTCCCAAAATAAGTGTCTC 59.067 47.826 0.00 0.00 0.00 3.36
4233 7759 3.307480 CCTCCGTCCCAAAATAAGTGTCT 60.307 47.826 0.00 0.00 0.00 3.41
4234 7760 3.007635 CCTCCGTCCCAAAATAAGTGTC 58.992 50.000 0.00 0.00 0.00 3.67
4235 7761 2.290705 CCCTCCGTCCCAAAATAAGTGT 60.291 50.000 0.00 0.00 0.00 3.55
4236 7762 2.026636 TCCCTCCGTCCCAAAATAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
4237 7763 2.238898 CTCCCTCCGTCCCAAAATAAGT 59.761 50.000 0.00 0.00 0.00 2.24
4238 7764 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
4239 7765 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
4244 7770 2.245546 TCTATTACTCCCTCCGTCCCAA 59.754 50.000 0.00 0.00 0.00 4.12
4375 8018 5.451798 GCCTGAAAAGGAAGAACACAATGAA 60.452 40.000 0.00 0.00 0.00 2.57
4383 8026 6.415573 TCCTTATAGCCTGAAAAGGAAGAAC 58.584 40.000 0.26 0.00 43.43 3.01
4412 8055 2.438021 ACTTAACTGGACTGCCTTGTCA 59.562 45.455 0.00 0.00 38.61 3.58
4451 8094 9.688091 ATAAATCAGTCAAGAGAGTCAGTACTA 57.312 33.333 0.00 0.00 35.56 1.82
4590 8235 3.574284 TGGTGTGCATTTATGTTGCTC 57.426 42.857 0.00 0.00 40.77 4.26
4770 8421 1.066430 TCCAACGGAGATGTAAGCCAC 60.066 52.381 0.00 0.00 0.00 5.01
4788 8439 3.513515 AGTGTTCTCAGAAGAGGTCATCC 59.486 47.826 0.00 0.00 42.34 3.51
4826 8477 8.811994 ACTTTATGTAACTTGGGCATAAATGTT 58.188 29.630 8.70 0.00 41.35 2.71
4827 8478 8.361169 ACTTTATGTAACTTGGGCATAAATGT 57.639 30.769 8.70 7.16 41.35 2.71
4935 8587 8.070034 ACTTCATGCAATTTAGATCATGGAAA 57.930 30.769 0.00 0.00 37.49 3.13
4950 8602 8.443160 CGAGAAGAAATTAACTACTTCATGCAA 58.557 33.333 15.01 0.00 40.47 4.08
5012 8670 5.012239 ACACACAATAACTGAGGCATGAAT 58.988 37.500 0.00 0.00 0.00 2.57
5036 8694 2.157738 AGCCTGCAATCAAAGAGACAC 58.842 47.619 0.00 0.00 0.00 3.67
5106 8764 7.384660 GGATGCAGAGTTAGTCATTTCTGATAG 59.615 40.741 4.65 0.00 39.46 2.08
5127 8785 5.928264 AGTGAAAAGCAAAAAGTATGGATGC 59.072 36.000 0.00 0.00 37.28 3.91
5137 8795 7.148272 CCCTTGAAAATGAGTGAAAAGCAAAAA 60.148 33.333 0.00 0.00 0.00 1.94
5356 9015 0.798776 CAGATCGAAACTGTGCCACC 59.201 55.000 12.74 0.00 0.00 4.61
5518 9178 4.839121 AGAGGGCGTTGATTATTGTTACA 58.161 39.130 0.00 0.00 0.00 2.41
5561 9221 2.307098 GGTATCCTCTGCCAAGCCATAT 59.693 50.000 0.00 0.00 0.00 1.78
5698 9358 7.168905 AGGACTTTCACAACTTAGGGAAATAG 58.831 38.462 0.00 0.00 0.00 1.73
6038 9937 9.777297 ATAAACCTGAATTATGCAAAAACAACT 57.223 25.926 0.00 0.00 0.00 3.16
6043 9942 7.093354 TGCGATAAACCTGAATTATGCAAAAA 58.907 30.769 0.00 0.00 30.84 1.94
6149 10052 8.445275 AAAATACGGAGATGCACACATAATAA 57.555 30.769 0.00 0.00 36.35 1.40
6174 10099 2.423185 CAGAGCAACAACCACAGTCAAA 59.577 45.455 0.00 0.00 0.00 2.69
6175 10100 2.016318 CAGAGCAACAACCACAGTCAA 58.984 47.619 0.00 0.00 0.00 3.18
6176 10101 1.667236 CAGAGCAACAACCACAGTCA 58.333 50.000 0.00 0.00 0.00 3.41
6177 10102 0.947244 CCAGAGCAACAACCACAGTC 59.053 55.000 0.00 0.00 0.00 3.51
6178 10103 0.255890 ACCAGAGCAACAACCACAGT 59.744 50.000 0.00 0.00 0.00 3.55
6179 10104 2.146342 CTACCAGAGCAACAACCACAG 58.854 52.381 0.00 0.00 0.00 3.66
6180 10105 1.765904 TCTACCAGAGCAACAACCACA 59.234 47.619 0.00 0.00 0.00 4.17
6181 10106 2.543777 TCTACCAGAGCAACAACCAC 57.456 50.000 0.00 0.00 0.00 4.16
6188 10113 3.447229 TCATCAACGATCTACCAGAGCAA 59.553 43.478 0.00 0.00 27.99 3.91
6194 10119 4.705023 TCTCAGTTCATCAACGATCTACCA 59.295 41.667 0.00 0.00 37.61 3.25
6205 10130 6.070596 ACATTACAGGACATCTCAGTTCATCA 60.071 38.462 0.00 0.00 0.00 3.07
6233 10159 1.985159 AGCCCTGACACCAGACAATAA 59.015 47.619 0.00 0.00 43.02 1.40
6238 10164 1.348036 AGTTAAGCCCTGACACCAGAC 59.652 52.381 0.00 0.00 43.02 3.51
6272 10199 6.016860 CGCAAAATCAAGATCCCATATTCAGA 60.017 38.462 0.00 0.00 0.00 3.27
6274 10201 5.827267 TCGCAAAATCAAGATCCCATATTCA 59.173 36.000 0.00 0.00 0.00 2.57
6275 10202 6.205464 TCTCGCAAAATCAAGATCCCATATTC 59.795 38.462 0.00 0.00 0.00 1.75
6276 10203 6.064060 TCTCGCAAAATCAAGATCCCATATT 58.936 36.000 0.00 0.00 0.00 1.28
6277 10204 5.624159 TCTCGCAAAATCAAGATCCCATAT 58.376 37.500 0.00 0.00 0.00 1.78
6278 10205 5.034852 TCTCGCAAAATCAAGATCCCATA 57.965 39.130 0.00 0.00 0.00 2.74
6283 10230 7.418840 AGTGATATCTCGCAAAATCAAGATC 57.581 36.000 3.98 0.00 34.19 2.75
6284 10231 8.893219 TTAGTGATATCTCGCAAAATCAAGAT 57.107 30.769 3.98 0.00 34.19 2.40
6305 10252 9.761504 GAACTCTTAGTTAACCAAGTTCTTAGT 57.238 33.333 21.09 12.59 38.80 2.24
6306 10253 9.205719 GGAACTCTTAGTTAACCAAGTTCTTAG 57.794 37.037 24.19 14.21 38.80 2.18
6308 10255 7.715686 CAGGAACTCTTAGTTAACCAAGTTCTT 59.284 37.037 24.19 19.33 38.80 2.52
6310 10257 6.427242 CCAGGAACTCTTAGTTAACCAAGTTC 59.573 42.308 20.65 20.65 38.80 3.01
6315 10262 4.041198 CCACCAGGAACTCTTAGTTAACCA 59.959 45.833 0.88 0.00 38.80 3.67
6317 10264 4.001652 GCCACCAGGAACTCTTAGTTAAC 58.998 47.826 0.00 0.00 38.80 2.01
6318 10265 3.649023 TGCCACCAGGAACTCTTAGTTAA 59.351 43.478 0.00 0.00 38.80 2.01
6319 10266 3.244582 TGCCACCAGGAACTCTTAGTTA 58.755 45.455 0.00 0.00 38.80 2.24
6323 10270 3.181434 ACAAATGCCACCAGGAACTCTTA 60.181 43.478 0.00 0.00 34.60 2.10
6324 10271 2.242043 CAAATGCCACCAGGAACTCTT 58.758 47.619 0.00 0.00 34.60 2.85
6325 10272 1.145738 ACAAATGCCACCAGGAACTCT 59.854 47.619 0.00 0.00 34.60 3.24
6326 10273 1.620822 ACAAATGCCACCAGGAACTC 58.379 50.000 0.00 0.00 34.60 3.01
6327 10274 2.086610 AACAAATGCCACCAGGAACT 57.913 45.000 0.00 0.00 43.88 3.01
6328 10275 2.908688 AAACAAATGCCACCAGGAAC 57.091 45.000 0.00 0.00 36.89 3.62
6329 10276 4.162320 TGTTTAAACAAATGCCACCAGGAA 59.838 37.500 18.54 0.00 35.67 3.36
6330 10277 3.706594 TGTTTAAACAAATGCCACCAGGA 59.293 39.130 18.54 0.00 35.67 3.86
6331 10278 4.065321 TGTTTAAACAAATGCCACCAGG 57.935 40.909 18.54 0.00 35.67 4.45
6344 10310 8.565416 GTGGGTGCCTATATATCTTGTTTAAAC 58.435 37.037 11.54 11.54 0.00 2.01
6346 10312 7.228590 GGTGGGTGCCTATATATCTTGTTTAA 58.771 38.462 0.00 0.00 0.00 1.52
6359 10325 3.797353 CGCAGGGTGGGTGCCTAT 61.797 66.667 0.00 0.00 37.67 2.57
6375 10341 5.218885 CCAGCATTCTAGTCTCAATCTACG 58.781 45.833 0.00 0.00 0.00 3.51
6377 10343 5.658634 ACACCAGCATTCTAGTCTCAATCTA 59.341 40.000 0.00 0.00 0.00 1.98
6380 10346 4.511527 CACACCAGCATTCTAGTCTCAAT 58.488 43.478 0.00 0.00 0.00 2.57
6389 10355 2.620112 GCACGCACACCAGCATTCT 61.620 57.895 0.00 0.00 0.00 2.40
6390 10356 2.126734 GCACGCACACCAGCATTC 60.127 61.111 0.00 0.00 0.00 2.67
6425 10391 1.268899 GGATAACTCGCGGCTAGCTAA 59.731 52.381 15.72 0.00 45.59 3.09
6426 10392 0.879765 GGATAACTCGCGGCTAGCTA 59.120 55.000 15.72 0.00 45.59 3.32
6467 10433 7.355332 AGTCAATTGCATTTCAAATAACTGC 57.645 32.000 0.00 0.00 38.34 4.40
6536 10502 8.746922 TTTCATGATTTGTGTGATTCTAAAGC 57.253 30.769 0.00 0.00 0.00 3.51
6538 10504 9.142515 GCATTTCATGATTTGTGTGATTCTAAA 57.857 29.630 0.00 0.00 0.00 1.85
6545 10516 4.082081 GGAGGCATTTCATGATTTGTGTGA 60.082 41.667 0.00 0.00 0.00 3.58
6582 10553 9.677567 GAGTTTACATTCTGTAATTTGCTGAAA 57.322 29.630 10.00 0.00 41.83 2.69
6661 10635 7.066284 AGGATGAATATTCTTTTCAGTGTTCGG 59.934 37.037 16.24 0.00 36.60 4.30
6706 10680 2.632512 GACTGGCCCATTTCCAAGAAAA 59.367 45.455 0.00 0.00 32.41 2.29
6710 10684 1.547372 CAAGACTGGCCCATTTCCAAG 59.453 52.381 0.00 0.00 32.41 3.61
6711 10685 1.146774 TCAAGACTGGCCCATTTCCAA 59.853 47.619 0.00 0.00 32.41 3.53
6712 10686 0.776810 TCAAGACTGGCCCATTTCCA 59.223 50.000 0.00 0.00 0.00 3.53
6713 10687 2.149973 ATCAAGACTGGCCCATTTCC 57.850 50.000 0.00 0.00 0.00 3.13
6714 10688 4.526970 TCTAATCAAGACTGGCCCATTTC 58.473 43.478 0.00 0.00 0.00 2.17
6715 10689 4.591321 TCTAATCAAGACTGGCCCATTT 57.409 40.909 0.00 0.00 0.00 2.32
6733 10731 7.828717 TGCTGATTTTGACAAAGATATGGTCTA 59.171 33.333 0.10 0.00 35.67 2.59
6761 10759 4.682860 CGTCACAAACTCCATAGTTACGTT 59.317 41.667 0.00 0.00 45.37 3.99
6762 10760 4.232221 CGTCACAAACTCCATAGTTACGT 58.768 43.478 0.00 0.00 45.37 3.57
6784 10782 5.520376 AAATATGGCATAACAGCAAGGAC 57.480 39.130 11.86 0.00 35.83 3.85
6801 10799 3.768757 TGGCAAAGGTAGCTGCAAAATAT 59.231 39.130 3.61 0.00 40.46 1.28
6803 10801 1.969923 TGGCAAAGGTAGCTGCAAAAT 59.030 42.857 3.61 0.00 40.46 1.82
6829 10828 4.706962 GGAGCAGTCAAATATCCCACTTTT 59.293 41.667 0.00 0.00 0.00 2.27
6898 10897 4.873827 TCCGTATGGTTTAAGATGAACTGC 59.126 41.667 0.00 0.00 36.30 4.40
6956 10955 5.302059 TGAATAGTCACACAGGTAGGCTATC 59.698 44.000 0.00 0.00 0.00 2.08
7064 11169 0.100325 CGTTTGCTTTGACAGGTGCA 59.900 50.000 0.00 0.00 0.00 4.57
7085 11190 1.537202 CTTTTGGCTTTCTCCACGAGG 59.463 52.381 0.00 0.00 35.50 4.63
7200 11305 1.072266 ACCAAGAACACAGGCCCATA 58.928 50.000 0.00 0.00 0.00 2.74
7208 11313 1.004277 GAGGGGCATACCAAGAACACA 59.996 52.381 0.00 0.00 42.91 3.72
7224 11329 4.874199 AGAGGAGTAGAAGTTTAGGAGGG 58.126 47.826 0.00 0.00 0.00 4.30
7254 11359 5.560966 AACCAACAACACTTGTAAGACAG 57.439 39.130 0.00 0.00 44.59 3.51
7262 11368 7.644986 TTAGTTCAAAAACCAACAACACTTG 57.355 32.000 0.00 0.00 35.92 3.16
7279 11385 4.974645 ACAGAGGTGGACAATTAGTTCA 57.025 40.909 0.00 0.00 31.67 3.18
7448 11557 2.297315 CTGTCCAGACACAGCTAGTCAA 59.703 50.000 17.68 3.64 37.58 3.18
7539 11648 1.613630 GGAGCAGTCAAGGGGAGGA 60.614 63.158 0.00 0.00 0.00 3.71
7572 11685 5.991328 AACACATCACTCTACACAAACTG 57.009 39.130 0.00 0.00 0.00 3.16
7619 11732 6.787225 TGTGTTACAGGTACAAAACAATGAC 58.213 36.000 0.00 0.00 33.92 3.06
7620 11733 7.575414 ATGTGTTACAGGTACAAAACAATGA 57.425 32.000 0.00 0.00 33.92 2.57
7717 11837 6.200097 GGACACAACATACAAACATTTGAACC 59.800 38.462 11.24 0.00 40.55 3.62
7810 11949 3.181471 ACAGAGACAAGTGTTCCAGACAG 60.181 47.826 0.00 0.00 39.39 3.51
7817 11956 7.119992 TGAGTAGATAGACAGAGACAAGTGTTC 59.880 40.741 0.00 0.00 0.00 3.18
7819 11958 6.477253 TGAGTAGATAGACAGAGACAAGTGT 58.523 40.000 0.00 0.00 0.00 3.55
7825 11964 7.494211 TGAGTACTGAGTAGATAGACAGAGAC 58.506 42.308 0.00 0.00 34.88 3.36
7831 11971 8.271312 ACAAACTGAGTACTGAGTAGATAGAC 57.729 38.462 15.71 0.00 0.00 2.59
7956 12133 2.095461 GGAGAAGGAAAATGAGGCCAC 58.905 52.381 5.01 0.00 0.00 5.01
8280 13378 7.039784 CCCCTAGAAAGTTCATGTTCAAATTCA 60.040 37.037 0.00 0.00 0.00 2.57
8345 13443 8.545420 CAAATTTGAATGTTTCAGAAAGTCCAG 58.455 33.333 13.08 0.00 41.38 3.86
8348 13446 9.305925 ACTCAAATTTGAATGTTTCAGAAAGTC 57.694 29.630 20.82 0.00 41.38 3.01
8383 13481 1.544093 CGTATGCTCCCATGCTCCAAT 60.544 52.381 0.00 0.00 32.60 3.16
8435 13534 2.559381 ATGTGGAGAGGAGCTAAGGT 57.441 50.000 0.00 0.00 0.00 3.50
8503 13602 2.503382 GGAGGGGAGCGATCAGGTC 61.503 68.421 1.84 7.83 46.08 3.85
8552 13651 3.690139 TCGGCACTTGTTTAAGTTGAACA 59.310 39.130 9.00 9.00 44.57 3.18
8572 13672 5.515270 TCACGTAATAAATCTTGAGCACTCG 59.485 40.000 0.00 0.00 0.00 4.18
8644 13747 2.644798 AGGTTCTTGAGTATGGCACCTT 59.355 45.455 0.00 0.00 28.23 3.50
8722 13826 7.872993 TCTTTCTAGATGAACGAGAAACATTGT 59.127 33.333 0.00 0.00 42.27 2.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.