Multiple sequence alignment - TraesCS4D01G332900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G332900 chr4D 100.000 3569 0 0 3410 6978 490369446 490373014 0.000000e+00 6591.0
1 TraesCS4D01G332900 chr4D 100.000 3062 0 0 1 3062 490366037 490369098 0.000000e+00 5655.0
2 TraesCS4D01G332900 chr4D 89.320 515 44 7 6463 6972 348060989 348061497 2.750000e-178 636.0
3 TraesCS4D01G332900 chr5A 93.727 2439 78 16 4586 6978 671948596 671951005 0.000000e+00 3587.0
4 TraesCS4D01G332900 chr5A 97.483 1192 23 2 3410 4594 671925261 671926452 0.000000e+00 2028.0
5 TraesCS4D01G332900 chr5A 95.569 993 38 1 2072 3058 671915744 671916736 0.000000e+00 1585.0
6 TraesCS4D01G332900 chr5A 93.166 717 20 5 837 1538 671865497 671866199 0.000000e+00 1026.0
7 TraesCS4D01G332900 chr5A 85.335 866 55 30 1 840 671864638 671865457 0.000000e+00 830.0
8 TraesCS4D01G332900 chr5A 89.474 266 13 5 1623 1877 671866194 671866455 8.730000e-84 322.0
9 TraesCS4D01G332900 chr5A 92.523 214 15 1 1872 2085 671866974 671867186 8.790000e-79 305.0
10 TraesCS4D01G332900 chr4B 95.734 1383 40 8 4793 6165 629989724 629991097 0.000000e+00 2209.0
11 TraesCS4D01G332900 chr4B 95.556 1395 35 6 3410 4788 629988307 629989690 0.000000e+00 2207.0
12 TraesCS4D01G332900 chr4B 95.321 748 29 4 2070 2812 629986944 629987690 0.000000e+00 1182.0
13 TraesCS4D01G332900 chr4B 83.952 997 70 36 579 1528 629985498 629986451 0.000000e+00 872.0
14 TraesCS4D01G332900 chr4B 88.235 612 49 15 1 598 629984872 629985474 0.000000e+00 710.0
15 TraesCS4D01G332900 chr4B 88.528 523 50 7 6463 6978 291717011 291716492 5.940000e-175 625.0
16 TraesCS4D01G332900 chr4B 89.486 428 22 6 1681 2085 629986472 629986899 2.880000e-143 520.0
17 TraesCS4D01G332900 chr4B 96.708 243 8 0 2803 3045 629988050 629988292 8.430000e-109 405.0
18 TraesCS4D01G332900 chr1D 86.705 865 92 16 3616 4478 480803813 480802970 0.000000e+00 939.0
19 TraesCS4D01G332900 chr1D 87.954 523 54 5 6463 6978 138942825 138942305 5.980000e-170 608.0
20 TraesCS4D01G332900 chr1D 81.739 575 62 21 4812 5355 480802628 480802066 2.310000e-119 440.0
21 TraesCS4D01G332900 chr1D 82.222 315 40 10 2081 2394 480804932 480804633 2.500000e-64 257.0
22 TraesCS4D01G332900 chr1D 90.230 174 17 0 2442 2615 480804156 480803983 1.960000e-55 228.0
23 TraesCS4D01G332900 chr1D 89.189 111 12 0 4678 4788 480802812 480802702 9.440000e-29 139.0
24 TraesCS4D01G332900 chr1B 86.127 865 97 16 3616 4478 669030357 669029514 0.000000e+00 911.0
25 TraesCS4D01G332900 chr1B 80.501 559 67 25 4812 5338 669029162 669028614 2.360000e-104 390.0
26 TraesCS4D01G332900 chr1B 80.447 358 60 7 5416 5767 669028243 669027890 1.490000e-66 265.0
27 TraesCS4D01G332900 chr1B 81.682 333 39 11 2081 2412 669031933 669031622 2.500000e-64 257.0
28 TraesCS4D01G332900 chr1B 89.674 184 19 0 2444 2627 669031122 669030939 1.170000e-57 235.0
29 TraesCS4D01G332900 chr1B 89.189 111 12 0 4678 4788 669029348 669029238 9.440000e-29 139.0
30 TraesCS4D01G332900 chr1A 86.044 867 94 20 3616 4478 577310678 577309835 0.000000e+00 905.0
31 TraesCS4D01G332900 chr1A 80.859 559 65 23 4812 5338 577309491 577308943 1.090000e-107 401.0
32 TraesCS4D01G332900 chr1A 81.931 321 43 10 2092 2412 577312086 577311781 2.500000e-64 257.0
33 TraesCS4D01G332900 chr1A 87.368 190 23 1 2438 2627 577311287 577311099 4.240000e-52 217.0
34 TraesCS4D01G332900 chr1A 79.661 236 27 8 4564 4788 577309792 577309567 4.360000e-32 150.0
35 TraesCS4D01G332900 chr2B 89.101 523 50 1 6463 6978 449786363 449786885 1.640000e-180 643.0
36 TraesCS4D01G332900 chr5D 89.038 520 49 5 6464 6978 121169559 121170075 7.630000e-179 638.0
37 TraesCS4D01G332900 chr3D 88.910 523 46 7 6463 6978 268954171 268953654 9.870000e-178 634.0
38 TraesCS4D01G332900 chr6D 88.825 519 47 8 6463 6978 336484200 336484710 1.650000e-175 627.0
39 TraesCS4D01G332900 chr2D 88.650 511 55 2 6463 6973 629862615 629862108 2.760000e-173 619.0
40 TraesCS4D01G332900 chr3A 95.122 41 2 0 1560 1600 371366783 371366743 1.620000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G332900 chr4D 490366037 490373014 6977 False 6123.000000 6591 100.000000 1 6978 2 chr4D.!!$F2 6977
1 TraesCS4D01G332900 chr4D 348060989 348061497 508 False 636.000000 636 89.320000 6463 6972 1 chr4D.!!$F1 509
2 TraesCS4D01G332900 chr5A 671948596 671951005 2409 False 3587.000000 3587 93.727000 4586 6978 1 chr5A.!!$F3 2392
3 TraesCS4D01G332900 chr5A 671925261 671926452 1191 False 2028.000000 2028 97.483000 3410 4594 1 chr5A.!!$F2 1184
4 TraesCS4D01G332900 chr5A 671915744 671916736 992 False 1585.000000 1585 95.569000 2072 3058 1 chr5A.!!$F1 986
5 TraesCS4D01G332900 chr5A 671864638 671867186 2548 False 620.750000 1026 90.124500 1 2085 4 chr5A.!!$F4 2084
6 TraesCS4D01G332900 chr4B 629984872 629991097 6225 False 1157.857143 2209 92.141714 1 6165 7 chr4B.!!$F1 6164
7 TraesCS4D01G332900 chr4B 291716492 291717011 519 True 625.000000 625 88.528000 6463 6978 1 chr4B.!!$R1 515
8 TraesCS4D01G332900 chr1D 138942305 138942825 520 True 608.000000 608 87.954000 6463 6978 1 chr1D.!!$R1 515
9 TraesCS4D01G332900 chr1D 480802066 480804932 2866 True 400.600000 939 86.017000 2081 5355 5 chr1D.!!$R2 3274
10 TraesCS4D01G332900 chr1B 669027890 669031933 4043 True 366.166667 911 84.603333 2081 5767 6 chr1B.!!$R1 3686
11 TraesCS4D01G332900 chr1A 577308943 577312086 3143 True 386.000000 905 83.172600 2092 5338 5 chr1A.!!$R1 3246
12 TraesCS4D01G332900 chr2B 449786363 449786885 522 False 643.000000 643 89.101000 6463 6978 1 chr2B.!!$F1 515
13 TraesCS4D01G332900 chr5D 121169559 121170075 516 False 638.000000 638 89.038000 6464 6978 1 chr5D.!!$F1 514
14 TraesCS4D01G332900 chr3D 268953654 268954171 517 True 634.000000 634 88.910000 6463 6978 1 chr3D.!!$R1 515
15 TraesCS4D01G332900 chr6D 336484200 336484710 510 False 627.000000 627 88.825000 6463 6978 1 chr6D.!!$F1 515
16 TraesCS4D01G332900 chr2D 629862108 629862615 507 True 619.000000 619 88.650000 6463 6973 1 chr2D.!!$R1 510

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
743 838 1.077787 CTTCATGGGCCGGCACTTA 60.078 57.895 32.18 11.62 0.00 2.24 F
1558 1755 0.249955 TGCATGCCGAACTCTCATCA 59.750 50.000 16.68 0.00 0.00 3.07 F
2754 4038 0.535102 CAAGACAAACGGAGGCCACT 60.535 55.000 5.01 0.00 0.00 4.00 F
3446 5105 0.545646 TGCCCGTGATGAATCCATGA 59.454 50.000 0.00 0.00 32.09 3.07 F
4544 6644 2.049372 GAGGCCGGGGGTTATAAACTA 58.951 52.381 2.18 0.00 0.00 2.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2546 3830 0.896940 TAGAGCGTGGACTTTCCGGT 60.897 55.000 0.0 0.0 40.17 5.28 R
3427 5086 0.545646 TCATGGATTCATCACGGGCA 59.454 50.000 0.0 0.0 0.00 5.36 R
4724 6851 2.514824 GCCCTTGATCGACAGCCC 60.515 66.667 0.0 0.0 0.00 5.19 R
4774 6901 5.355071 GTCAAGCATAAATGTGATGGTCAGA 59.645 40.000 0.0 0.0 34.01 3.27 R
5984 8506 1.358787 TGGAGGATTGGATGTTTGCCT 59.641 47.619 0.0 0.0 0.00 4.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 41 9.956640 ATTTCAGCCCATATTTAAAAACATCAA 57.043 25.926 0.00 0.00 0.00 2.57
110 116 7.592533 GCGTTCTAAAAGTCCATCGTGTATATA 59.407 37.037 0.00 0.00 0.00 0.86
452 464 8.725405 TCTTAAAAAGTCACATGAACACACTA 57.275 30.769 0.00 0.00 0.00 2.74
555 573 2.254546 TTCAGGAATGCACGAACACT 57.745 45.000 0.00 0.00 0.00 3.55
556 574 2.254546 TCAGGAATGCACGAACACTT 57.745 45.000 0.00 0.00 0.00 3.16
557 575 2.571212 TCAGGAATGCACGAACACTTT 58.429 42.857 0.00 0.00 0.00 2.66
558 576 2.948979 TCAGGAATGCACGAACACTTTT 59.051 40.909 0.00 0.00 0.00 2.27
559 577 4.130857 TCAGGAATGCACGAACACTTTTA 58.869 39.130 0.00 0.00 0.00 1.52
560 578 4.759693 TCAGGAATGCACGAACACTTTTAT 59.240 37.500 0.00 0.00 0.00 1.40
561 579 5.935206 TCAGGAATGCACGAACACTTTTATA 59.065 36.000 0.00 0.00 0.00 0.98
562 580 6.597672 TCAGGAATGCACGAACACTTTTATAT 59.402 34.615 0.00 0.00 0.00 0.86
563 581 7.766738 TCAGGAATGCACGAACACTTTTATATA 59.233 33.333 0.00 0.00 0.00 0.86
564 582 8.394877 CAGGAATGCACGAACACTTTTATATAA 58.605 33.333 0.00 0.00 0.00 0.98
565 583 9.120538 AGGAATGCACGAACACTTTTATATAAT 57.879 29.630 0.00 0.00 0.00 1.28
566 584 9.382244 GGAATGCACGAACACTTTTATATAATC 57.618 33.333 0.00 0.00 0.00 1.75
567 585 9.929722 GAATGCACGAACACTTTTATATAATCA 57.070 29.630 0.00 0.00 0.00 2.57
569 587 9.882996 ATGCACGAACACTTTTATATAATCATG 57.117 29.630 0.00 0.00 0.00 3.07
570 588 9.103861 TGCACGAACACTTTTATATAATCATGA 57.896 29.630 0.00 0.00 0.00 3.07
571 589 9.586150 GCACGAACACTTTTATATAATCATGAG 57.414 33.333 0.09 0.00 0.00 2.90
572 590 9.586150 CACGAACACTTTTATATAATCATGAGC 57.414 33.333 0.09 0.00 0.00 4.26
573 591 9.325198 ACGAACACTTTTATATAATCATGAGCA 57.675 29.630 0.09 0.00 0.00 4.26
628 708 8.173542 ACAACCGATAATTTTGTCTTACCTTT 57.826 30.769 0.00 0.00 0.00 3.11
632 712 7.597369 ACCGATAATTTTGTCTTACCTTTTTGC 59.403 33.333 0.00 0.00 0.00 3.68
706 786 3.047613 ACGCAAACGAAGAAACAAGAC 57.952 42.857 0.00 0.00 43.93 3.01
743 838 1.077787 CTTCATGGGCCGGCACTTA 60.078 57.895 32.18 11.62 0.00 2.24
748 843 3.440415 GGGCCGGCACTTAAGCAC 61.440 66.667 30.85 6.91 35.83 4.40
777 872 1.735376 TAGGAGACGCGAGCATTCCC 61.735 60.000 15.93 3.08 0.00 3.97
802 897 4.561735 GCTCCAGGCGAGATATATAGAC 57.438 50.000 0.00 0.00 41.63 2.59
803 898 4.204012 GCTCCAGGCGAGATATATAGACT 58.796 47.826 0.00 0.00 41.63 3.24
804 899 5.369833 GCTCCAGGCGAGATATATAGACTA 58.630 45.833 0.00 0.00 41.63 2.59
805 900 5.823570 GCTCCAGGCGAGATATATAGACTAA 59.176 44.000 0.00 0.00 41.63 2.24
806 901 6.488683 GCTCCAGGCGAGATATATAGACTAAT 59.511 42.308 0.00 0.00 41.63 1.73
922 1061 4.635765 CAGTCTTTTCAGTGAGAACCAACA 59.364 41.667 0.00 0.00 35.56 3.33
923 1062 5.297776 CAGTCTTTTCAGTGAGAACCAACAT 59.702 40.000 0.00 0.00 35.56 2.71
924 1063 5.529060 AGTCTTTTCAGTGAGAACCAACATC 59.471 40.000 0.00 0.00 35.56 3.06
925 1064 5.296780 GTCTTTTCAGTGAGAACCAACATCA 59.703 40.000 0.00 0.00 35.56 3.07
959 1098 2.973224 CGCGTCAAAACTCAAAAGATGG 59.027 45.455 0.00 0.00 0.00 3.51
1059 1225 3.636231 CTCTCACCCACCCCGCAA 61.636 66.667 0.00 0.00 0.00 4.85
1060 1226 3.901797 CTCTCACCCACCCCGCAAC 62.902 68.421 0.00 0.00 0.00 4.17
1149 1319 2.202676 CTCTGCTCTTCCGTCCGC 60.203 66.667 0.00 0.00 0.00 5.54
1297 1490 0.746204 TGTTCTGTTGCTGTTCGCCA 60.746 50.000 0.00 0.00 38.05 5.69
1320 1517 4.950475 AGGATTCATCGTCTCTGTTCACTA 59.050 41.667 0.00 0.00 0.00 2.74
1375 1572 3.890756 TGTGTGTGATCCAAGAAATTGCT 59.109 39.130 0.00 0.00 0.00 3.91
1426 1623 2.866762 AGAACGAGTTTCAGCACTTGAC 59.133 45.455 0.00 0.00 36.57 3.18
1449 1646 4.097286 CCTGTGATGGTATTAAAAACGGGG 59.903 45.833 0.00 0.00 0.00 5.73
1486 1683 3.600388 CAGCTTTCCGGATGTTCTTAGT 58.400 45.455 4.15 0.00 0.00 2.24
1513 1710 6.405842 GGTCAAAAAGTCAAAACCATGAGAGT 60.406 38.462 0.00 0.00 0.00 3.24
1555 1752 2.771435 CATGCATGCCGAACTCTCA 58.229 52.632 14.93 0.00 0.00 3.27
1556 1753 1.306148 CATGCATGCCGAACTCTCAT 58.694 50.000 14.93 0.00 0.00 2.90
1557 1754 1.263484 CATGCATGCCGAACTCTCATC 59.737 52.381 14.93 0.00 0.00 2.92
1558 1755 0.249955 TGCATGCCGAACTCTCATCA 59.750 50.000 16.68 0.00 0.00 3.07
1559 1756 1.134310 TGCATGCCGAACTCTCATCAT 60.134 47.619 16.68 0.00 0.00 2.45
1560 1757 1.263484 GCATGCCGAACTCTCATCATG 59.737 52.381 6.36 0.00 35.58 3.07
1561 1758 2.558378 CATGCCGAACTCTCATCATGT 58.442 47.619 0.00 0.00 31.41 3.21
1562 1759 2.768253 TGCCGAACTCTCATCATGTT 57.232 45.000 0.00 0.00 0.00 2.71
1563 1760 3.057969 TGCCGAACTCTCATCATGTTT 57.942 42.857 0.00 0.00 0.00 2.83
1564 1761 2.743664 TGCCGAACTCTCATCATGTTTG 59.256 45.455 0.00 0.00 0.00 2.93
1565 1762 2.744202 GCCGAACTCTCATCATGTTTGT 59.256 45.455 0.00 0.00 0.00 2.83
1566 1763 3.932710 GCCGAACTCTCATCATGTTTGTA 59.067 43.478 0.00 0.00 0.00 2.41
1567 1764 4.572389 GCCGAACTCTCATCATGTTTGTAT 59.428 41.667 0.00 0.00 0.00 2.29
1568 1765 5.277058 GCCGAACTCTCATCATGTTTGTATC 60.277 44.000 0.00 0.00 0.00 2.24
1569 1766 5.235186 CCGAACTCTCATCATGTTTGTATCC 59.765 44.000 0.00 0.00 0.00 2.59
1570 1767 5.051441 CGAACTCTCATCATGTTTGTATCCG 60.051 44.000 0.00 0.00 0.00 4.18
1571 1768 4.122776 ACTCTCATCATGTTTGTATCCGC 58.877 43.478 0.00 0.00 0.00 5.54
1572 1769 4.141846 ACTCTCATCATGTTTGTATCCGCT 60.142 41.667 0.00 0.00 0.00 5.52
1573 1770 4.769688 TCTCATCATGTTTGTATCCGCTT 58.230 39.130 0.00 0.00 0.00 4.68
1574 1771 5.912892 TCTCATCATGTTTGTATCCGCTTA 58.087 37.500 0.00 0.00 0.00 3.09
1575 1772 6.345298 TCTCATCATGTTTGTATCCGCTTAA 58.655 36.000 0.00 0.00 0.00 1.85
1576 1773 6.992123 TCTCATCATGTTTGTATCCGCTTAAT 59.008 34.615 0.00 0.00 0.00 1.40
1577 1774 6.958255 TCATCATGTTTGTATCCGCTTAATG 58.042 36.000 0.00 0.00 0.00 1.90
1578 1775 5.168526 TCATGTTTGTATCCGCTTAATGC 57.831 39.130 0.00 0.00 38.57 3.56
1579 1776 4.881273 TCATGTTTGTATCCGCTTAATGCT 59.119 37.500 0.00 0.00 40.11 3.79
1580 1777 5.356751 TCATGTTTGTATCCGCTTAATGCTT 59.643 36.000 0.00 0.00 40.11 3.91
1581 1778 5.229921 TGTTTGTATCCGCTTAATGCTTC 57.770 39.130 0.00 0.00 40.11 3.86
1582 1779 4.697828 TGTTTGTATCCGCTTAATGCTTCA 59.302 37.500 0.00 0.00 40.11 3.02
1583 1780 5.356751 TGTTTGTATCCGCTTAATGCTTCAT 59.643 36.000 0.00 0.00 40.11 2.57
1584 1781 6.127758 TGTTTGTATCCGCTTAATGCTTCATT 60.128 34.615 0.00 0.00 40.11 2.57
1585 1782 6.449635 TTGTATCCGCTTAATGCTTCATTT 57.550 33.333 0.00 0.00 40.11 2.32
1586 1783 6.060028 TGTATCCGCTTAATGCTTCATTTC 57.940 37.500 0.00 0.00 40.11 2.17
1587 1784 5.588246 TGTATCCGCTTAATGCTTCATTTCA 59.412 36.000 0.00 0.00 40.11 2.69
1588 1785 5.581126 ATCCGCTTAATGCTTCATTTCAA 57.419 34.783 0.00 0.00 40.11 2.69
1589 1786 4.985413 TCCGCTTAATGCTTCATTTCAAG 58.015 39.130 0.00 0.00 40.11 3.02
1590 1787 4.699735 TCCGCTTAATGCTTCATTTCAAGA 59.300 37.500 0.00 0.00 40.11 3.02
1591 1788 5.357878 TCCGCTTAATGCTTCATTTCAAGAT 59.642 36.000 0.00 0.00 40.11 2.40
1592 1789 6.542005 TCCGCTTAATGCTTCATTTCAAGATA 59.458 34.615 0.00 0.00 40.11 1.98
1593 1790 7.066887 TCCGCTTAATGCTTCATTTCAAGATAA 59.933 33.333 0.00 0.00 40.11 1.75
1594 1791 7.864379 CCGCTTAATGCTTCATTTCAAGATAAT 59.136 33.333 0.00 0.00 40.11 1.28
1595 1792 9.882996 CGCTTAATGCTTCATTTCAAGATAATA 57.117 29.630 0.00 0.00 40.11 0.98
1640 1837 4.989279 AAAGCATGCCGAATTCATAGTT 57.011 36.364 15.66 0.00 0.00 2.24
1646 1843 2.222027 GCCGAATTCATAGTTCTGGGG 58.778 52.381 6.22 0.00 0.00 4.96
1686 1887 2.304180 TCTTGCTTTCCCTGAAGAGAGG 59.696 50.000 0.00 0.00 0.00 3.69
1687 1888 2.030027 TGCTTTCCCTGAAGAGAGGA 57.970 50.000 0.00 0.00 34.69 3.71
1688 1889 1.625818 TGCTTTCCCTGAAGAGAGGAC 59.374 52.381 0.00 0.00 34.69 3.85
1713 1918 5.368816 AGAACAAGGTTTAGGGTGAGTTAGT 59.631 40.000 0.00 0.00 0.00 2.24
1751 1963 3.296322 TCAGAAAATTGCGCCGAATTT 57.704 38.095 4.18 8.87 37.16 1.82
1764 1979 5.923684 TGCGCCGAATTTATTTTTCTTTCTT 59.076 32.000 4.18 0.00 0.00 2.52
1816 2031 0.538584 TGGTAGCCTGCAGTCTCATG 59.461 55.000 13.81 0.00 0.00 3.07
1954 2705 2.230508 CTCCGAGGTGCTGTACTACAAA 59.769 50.000 0.00 0.00 0.00 2.83
1969 2720 6.817641 TGTACTACAAAAAGAAACCTTCGTCA 59.182 34.615 0.00 0.00 34.02 4.35
1983 2734 4.572571 GTCAACACACGGGCCCCA 62.573 66.667 18.66 0.00 0.00 4.96
1984 2735 3.575247 TCAACACACGGGCCCCAT 61.575 61.111 18.66 0.37 0.00 4.00
1987 2738 0.682855 CAACACACGGGCCCCATAAT 60.683 55.000 18.66 0.00 0.00 1.28
2025 2776 7.669722 AGCCAATTTAATACGGTATCATCCATT 59.330 33.333 0.30 0.00 0.00 3.16
2123 2934 2.287188 GCGGTTGCTTATGTCATGATGG 60.287 50.000 0.00 0.00 38.39 3.51
2225 3036 4.281941 AGAGTACTCTGCACAACTGATTGA 59.718 41.667 24.62 0.00 38.75 2.57
2424 3708 6.584563 ACGGTATGCATTTGTAACATGTTTTC 59.415 34.615 17.78 11.01 0.00 2.29
2425 3709 6.034470 CGGTATGCATTTGTAACATGTTTTCC 59.966 38.462 17.78 6.05 0.00 3.13
2560 3844 2.690786 TCATTTACCGGAAAGTCCACG 58.309 47.619 9.46 0.00 35.91 4.94
2722 4006 8.311836 GTTGGGCTATATAACAGATAGTGCTAA 58.688 37.037 0.00 0.00 30.78 3.09
2747 4031 4.884668 AGAATAGACCAAGACAAACGGA 57.115 40.909 0.00 0.00 0.00 4.69
2754 4038 0.535102 CAAGACAAACGGAGGCCACT 60.535 55.000 5.01 0.00 0.00 4.00
2821 4474 8.682936 AAGGCCTCTTGTTCTTTACATATATG 57.317 34.615 5.23 11.29 36.44 1.78
2847 4506 5.476254 GGAGTATGGCGGTAGTCTTAAGTAT 59.524 44.000 1.63 0.00 0.00 2.12
2970 4629 5.571285 TCCTAGAGTTGCTCTTAGTCAGAA 58.429 41.667 3.87 0.00 41.50 3.02
3013 4672 1.392589 TCACGGATAGTTACGGGGTC 58.607 55.000 0.00 0.00 33.57 4.46
3054 4713 3.772387 TGGCAGGTTGTGATTGGATTAA 58.228 40.909 0.00 0.00 0.00 1.40
3059 4718 5.203528 CAGGTTGTGATTGGATTAAGGGAT 58.796 41.667 0.00 0.00 0.00 3.85
3060 4719 5.658190 CAGGTTGTGATTGGATTAAGGGATT 59.342 40.000 0.00 0.00 0.00 3.01
3061 4720 6.833416 CAGGTTGTGATTGGATTAAGGGATTA 59.167 38.462 0.00 0.00 0.00 1.75
3434 5093 1.510844 GGCCAGTAAAATGCCCGTG 59.489 57.895 0.00 0.00 39.30 4.94
3446 5105 0.545646 TGCCCGTGATGAATCCATGA 59.454 50.000 0.00 0.00 32.09 3.07
3489 5148 6.543430 AGTCATATCTATGGCTGGAGATTC 57.457 41.667 3.59 0.00 46.08 2.52
3943 6014 7.394016 AGACACTAATGACCAATGAATACACA 58.606 34.615 0.00 0.00 0.00 3.72
4199 6270 2.312390 GTTTTGTGGAGCCCCTTTACA 58.688 47.619 0.00 0.00 0.00 2.41
4205 6276 4.742012 TGTGGAGCCCCTTTACATTTTTA 58.258 39.130 0.00 0.00 0.00 1.52
4544 6644 2.049372 GAGGCCGGGGGTTATAAACTA 58.951 52.381 2.18 0.00 0.00 2.24
4724 6851 6.536941 GCTGGAAGAATCTAAGACTAAGGTTG 59.463 42.308 0.00 0.00 34.07 3.77
4765 6892 8.607441 GCACCATTGTGACTATTTCTATCATA 57.393 34.615 0.14 0.00 45.76 2.15
4788 6915 6.305272 AGTAAGTCATCTGACCATCACATT 57.695 37.500 6.71 0.00 45.85 2.71
4789 6916 6.715280 AGTAAGTCATCTGACCATCACATTT 58.285 36.000 6.71 0.00 45.85 2.32
4791 6918 8.489489 AGTAAGTCATCTGACCATCACATTTAT 58.511 33.333 6.71 0.00 45.85 1.40
4983 7177 7.859377 GCATAACCAATATATATGACATGCAGC 59.141 37.037 15.83 0.00 36.09 5.25
5324 7540 5.533154 CCACTGACGAGTATCCTCTAAGATT 59.467 44.000 0.00 0.00 35.43 2.40
5382 7870 6.173339 TGACATTCTCCCTCTTCATGTTTAC 58.827 40.000 0.00 0.00 0.00 2.01
5732 8243 7.935520 TCTTTATGTTTGTATTGTTGCTCACA 58.064 30.769 0.00 0.00 0.00 3.58
5859 8381 8.267620 ACCTCCATGTGATTCTAGATGAATAA 57.732 34.615 0.00 0.00 44.70 1.40
5902 8424 4.437682 TTGCATAGGGATTGGAGGTAAG 57.562 45.455 0.00 0.00 0.00 2.34
5984 8506 3.248043 GCATGTGGCAAGTGGACTA 57.752 52.632 0.00 0.00 43.97 2.59
6007 8529 2.165030 GCAAACATCCAATCCTCCACTG 59.835 50.000 0.00 0.00 0.00 3.66
6032 8554 2.416162 GGAGCTAGTCTCACTTTCCACG 60.416 54.545 13.76 0.00 43.70 4.94
6132 8654 6.656693 ACTTAATCTGTCATGTCAAAAGGAGG 59.343 38.462 0.00 0.00 0.00 4.30
6202 8724 0.963355 TATTTGGACCACGCTTGCCC 60.963 55.000 0.00 0.00 0.00 5.36
6208 8730 3.058160 CCACGCTTGCCCTTCCAG 61.058 66.667 0.00 0.00 0.00 3.86
6312 8837 6.426937 GCACATACCATTATGTAACAGGTAGG 59.573 42.308 12.49 12.49 45.57 3.18
6346 8871 6.462995 CGTGAATACGCAAATTGTGAATAC 57.537 37.500 13.95 4.32 44.11 1.89
6347 8872 5.167105 CGTGAATACGCAAATTGTGAATACG 59.833 40.000 13.95 11.46 44.11 3.06
6348 8873 5.025190 TGAATACGCAAATTGTGAATACGC 58.975 37.500 13.95 0.00 0.00 4.42
6349 8874 2.979401 ACGCAAATTGTGAATACGCA 57.021 40.000 13.95 0.00 34.56 5.24
6433 8958 2.111384 CAAGGAGGTGGCTAAGCTAGA 58.889 52.381 0.00 0.00 36.52 2.43
6443 8968 5.354513 GGTGGCTAAGCTAGAAAAGTTTAGG 59.645 44.000 9.66 0.00 44.76 2.69
6736 9261 5.735354 GCACATCTCCCATTGCAAGATAAAG 60.735 44.000 4.94 0.00 34.97 1.85
6932 9472 3.772025 AGAAGATCGAGGAGAACATGGTT 59.228 43.478 0.00 0.00 0.00 3.67
6942 9482 4.697352 AGGAGAACATGGTTTTGAAGATCG 59.303 41.667 0.00 0.00 0.00 3.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
75 81 4.494199 GGACTTTTAGAACGCGATGAATGG 60.494 45.833 15.93 0.00 0.00 3.16
76 82 4.092821 TGGACTTTTAGAACGCGATGAATG 59.907 41.667 15.93 6.38 0.00 2.67
123 129 7.448748 ACATGATGTACCTTTTAGAAACACC 57.551 36.000 0.00 0.00 0.00 4.16
157 164 7.955864 GTCCACGAAATTAGTAAAGATGAACAC 59.044 37.037 0.00 0.00 0.00 3.32
221 229 4.364415 GTGTTCACACCTTTGCAAAGTA 57.636 40.909 31.67 13.12 40.85 2.24
428 440 9.950680 AATAGTGTGTTCATGTGACTTTTTAAG 57.049 29.630 0.00 0.00 0.00 1.85
539 557 8.500753 TTATATAAAAGTGTTCGTGCATTCCT 57.499 30.769 0.00 0.00 0.00 3.36
628 708 5.238432 ACATTTTCGTACATCAGTCTGCAAA 59.762 36.000 0.00 0.00 0.00 3.68
632 712 7.812309 TCTAACATTTTCGTACATCAGTCTG 57.188 36.000 0.00 0.00 0.00 3.51
673 753 5.520022 TCGTTTGCGTTAAATCTTACTCC 57.480 39.130 0.00 0.00 39.49 3.85
674 754 6.814343 TCTTCGTTTGCGTTAAATCTTACTC 58.186 36.000 0.00 0.00 39.49 2.59
675 755 6.774354 TCTTCGTTTGCGTTAAATCTTACT 57.226 33.333 0.00 0.00 39.49 2.24
676 756 7.373966 TGTTTCTTCGTTTGCGTTAAATCTTAC 59.626 33.333 0.00 0.00 39.49 2.34
677 757 7.408123 TGTTTCTTCGTTTGCGTTAAATCTTA 58.592 30.769 0.00 0.00 39.49 2.10
678 758 6.259638 TGTTTCTTCGTTTGCGTTAAATCTT 58.740 32.000 0.00 0.00 39.49 2.40
689 769 5.276348 GGCATTTGTCTTGTTTCTTCGTTTG 60.276 40.000 0.00 0.00 0.00 2.93
743 838 2.654877 CTACACGGACGGGTGCTT 59.345 61.111 10.24 0.00 41.65 3.91
748 843 2.758089 CGTCTCCTACACGGACGGG 61.758 68.421 6.80 0.00 45.81 5.28
799 894 2.952978 CGGCAGGTCTGTCTATTAGTCT 59.047 50.000 0.98 0.00 31.96 3.24
800 895 2.544069 GCGGCAGGTCTGTCTATTAGTC 60.544 54.545 0.00 0.00 31.96 2.59
801 896 1.409427 GCGGCAGGTCTGTCTATTAGT 59.591 52.381 0.00 0.00 31.96 2.24
802 897 1.600663 CGCGGCAGGTCTGTCTATTAG 60.601 57.143 0.00 0.00 31.96 1.73
803 898 0.384309 CGCGGCAGGTCTGTCTATTA 59.616 55.000 0.00 0.00 31.96 0.98
804 899 1.141881 CGCGGCAGGTCTGTCTATT 59.858 57.895 0.00 0.00 31.96 1.73
805 900 2.786495 CCGCGGCAGGTCTGTCTAT 61.786 63.158 14.67 0.00 31.96 1.98
806 901 3.449227 CCGCGGCAGGTCTGTCTA 61.449 66.667 14.67 0.00 31.96 2.59
922 1061 1.016627 CGCGGTCCATGTTGATTGAT 58.983 50.000 0.00 0.00 0.00 2.57
923 1062 0.321210 ACGCGGTCCATGTTGATTGA 60.321 50.000 12.47 0.00 0.00 2.57
924 1063 0.096976 GACGCGGTCCATGTTGATTG 59.903 55.000 12.47 0.00 0.00 2.67
925 1064 0.321210 TGACGCGGTCCATGTTGATT 60.321 50.000 12.47 0.00 0.00 2.57
959 1098 0.530744 TAGTCTGGACGTGTGATGGC 59.469 55.000 0.00 0.00 36.20 4.40
1149 1319 4.758251 TGGTGATCCCAGCACGCG 62.758 66.667 3.53 3.53 44.86 6.01
1198 1380 4.446413 CCACGTACCTGACCGGGC 62.446 72.222 6.32 1.57 36.97 6.13
1297 1490 3.766591 AGTGAACAGAGACGATGAATCCT 59.233 43.478 0.00 0.00 0.00 3.24
1320 1517 6.723298 AGCTGAAGCAGTAGTAATCATAGT 57.277 37.500 4.90 0.00 45.16 2.12
1409 1606 1.528586 CAGGTCAAGTGCTGAAACTCG 59.471 52.381 0.00 0.00 35.22 4.18
1426 1623 4.097286 CCCCGTTTTTAATACCATCACAGG 59.903 45.833 0.00 0.00 0.00 4.00
1449 1646 4.733972 AAGCTGCTTCGTTTACTCTTTC 57.266 40.909 9.53 0.00 0.00 2.62
1486 1683 6.042638 TCATGGTTTTGACTTTTTGACCAA 57.957 33.333 0.00 0.00 40.23 3.67
1537 1734 1.263484 GATGAGAGTTCGGCATGCATG 59.737 52.381 22.70 22.70 0.00 4.06
1538 1735 1.134310 TGATGAGAGTTCGGCATGCAT 60.134 47.619 21.36 0.00 0.00 3.96
1539 1736 0.249955 TGATGAGAGTTCGGCATGCA 59.750 50.000 21.36 0.00 0.00 3.96
1540 1737 1.263484 CATGATGAGAGTTCGGCATGC 59.737 52.381 9.90 9.90 33.61 4.06
1541 1738 2.558378 ACATGATGAGAGTTCGGCATG 58.442 47.619 0.00 0.00 40.44 4.06
1542 1739 2.996249 ACATGATGAGAGTTCGGCAT 57.004 45.000 0.00 0.00 0.00 4.40
1543 1740 2.743664 CAAACATGATGAGAGTTCGGCA 59.256 45.455 0.00 0.00 0.00 5.69
1544 1741 2.744202 ACAAACATGATGAGAGTTCGGC 59.256 45.455 0.00 0.00 0.00 5.54
1545 1742 5.235186 GGATACAAACATGATGAGAGTTCGG 59.765 44.000 0.00 0.00 0.00 4.30
1546 1743 5.051441 CGGATACAAACATGATGAGAGTTCG 60.051 44.000 0.00 0.00 0.00 3.95
1547 1744 5.277058 GCGGATACAAACATGATGAGAGTTC 60.277 44.000 0.00 0.00 0.00 3.01
1548 1745 4.572389 GCGGATACAAACATGATGAGAGTT 59.428 41.667 0.00 0.00 0.00 3.01
1549 1746 4.122776 GCGGATACAAACATGATGAGAGT 58.877 43.478 0.00 0.00 0.00 3.24
1550 1747 4.375272 AGCGGATACAAACATGATGAGAG 58.625 43.478 0.00 0.00 0.00 3.20
1551 1748 4.406648 AGCGGATACAAACATGATGAGA 57.593 40.909 0.00 0.00 0.00 3.27
1552 1749 6.603237 TTAAGCGGATACAAACATGATGAG 57.397 37.500 0.00 0.00 0.00 2.90
1553 1750 6.513230 GCATTAAGCGGATACAAACATGATGA 60.513 38.462 0.00 0.00 0.00 2.92
1554 1751 5.626543 GCATTAAGCGGATACAAACATGATG 59.373 40.000 0.00 0.09 0.00 3.07
1555 1752 5.762045 GCATTAAGCGGATACAAACATGAT 58.238 37.500 0.00 0.00 0.00 2.45
1556 1753 5.168526 GCATTAAGCGGATACAAACATGA 57.831 39.130 0.00 0.00 0.00 3.07
1617 1814 5.329035 ACTATGAATTCGGCATGCTTTTT 57.671 34.783 18.92 6.53 0.00 1.94
1618 1815 4.989279 ACTATGAATTCGGCATGCTTTT 57.011 36.364 18.92 6.17 0.00 2.27
1619 1816 4.641989 AGAACTATGAATTCGGCATGCTTT 59.358 37.500 18.92 6.54 0.00 3.51
1620 1817 4.036027 CAGAACTATGAATTCGGCATGCTT 59.964 41.667 18.92 3.22 0.00 3.91
1621 1818 3.562973 CAGAACTATGAATTCGGCATGCT 59.437 43.478 18.92 0.00 0.00 3.79
1628 1825 3.199880 AGCCCCAGAACTATGAATTCG 57.800 47.619 0.04 0.00 0.00 3.34
1637 1834 2.270434 TCTATCCAAGCCCCAGAACT 57.730 50.000 0.00 0.00 0.00 3.01
1640 1837 1.133167 TCGATCTATCCAAGCCCCAGA 60.133 52.381 0.00 0.00 0.00 3.86
1646 1843 5.290643 GCAAGATGTATCGATCTATCCAAGC 59.709 44.000 0.00 7.83 32.11 4.01
1686 1887 4.065789 CTCACCCTAAACCTTGTTCTGTC 58.934 47.826 0.00 0.00 0.00 3.51
1687 1888 3.458487 ACTCACCCTAAACCTTGTTCTGT 59.542 43.478 0.00 0.00 0.00 3.41
1688 1889 4.086706 ACTCACCCTAAACCTTGTTCTG 57.913 45.455 0.00 0.00 0.00 3.02
1713 1918 7.561021 TTTCTGATACAAGTTGCACTTACAA 57.439 32.000 1.81 0.00 36.03 2.41
1733 1938 6.720012 AAAATAAATTCGGCGCAATTTTCT 57.280 29.167 24.19 14.98 37.23 2.52
1764 1979 3.244422 ACGAACCAGAGCATAAAACCAGA 60.244 43.478 0.00 0.00 0.00 3.86
1942 2693 6.134061 CGAAGGTTTCTTTTTGTAGTACAGC 58.866 40.000 2.68 0.00 32.52 4.40
1954 2705 3.181514 CGTGTGTTGACGAAGGTTTCTTT 60.182 43.478 0.00 0.00 42.10 2.52
1969 2720 0.920438 TATTATGGGGCCCGTGTGTT 59.080 50.000 27.99 11.20 0.00 3.32
1987 2738 9.268268 CGTATTAAATTGGCTTTGGTAGATCTA 57.732 33.333 0.00 0.00 0.00 1.98
2123 2934 2.908688 AAACCTGCAAATCACAACCC 57.091 45.000 0.00 0.00 0.00 4.11
2225 3036 4.534103 AGCTTGGAAAATCTAGACTGGAGT 59.466 41.667 0.00 0.00 0.00 3.85
2424 3708 5.645497 TGTCAAAACAAAAAGGACAAATGGG 59.355 36.000 0.00 0.00 35.72 4.00
2425 3709 6.593382 TCTGTCAAAACAAAAAGGACAAATGG 59.407 34.615 0.00 0.00 37.96 3.16
2540 3824 2.690786 CGTGGACTTTCCGGTAAATGA 58.309 47.619 0.00 0.00 40.17 2.57
2546 3830 0.896940 TAGAGCGTGGACTTTCCGGT 60.897 55.000 0.00 0.00 40.17 5.28
2548 3832 1.405821 AGATAGAGCGTGGACTTTCCG 59.594 52.381 0.00 0.00 40.17 4.30
2560 3844 3.386768 TGGTGGCGATTAAGATAGAGC 57.613 47.619 0.00 0.00 0.00 4.09
2722 4006 6.014840 TCCGTTTGTCTTGGTCTATTCTAGTT 60.015 38.462 0.00 0.00 0.00 2.24
2821 4474 1.984066 AGACTACCGCCATACTCCTC 58.016 55.000 0.00 0.00 0.00 3.71
2847 4506 3.745799 TCCTTAACATTTTCGCAGACCA 58.254 40.909 0.00 0.00 34.32 4.02
2970 4629 8.414003 TGAATGTAGCATTACTCGACTAAGAAT 58.586 33.333 0.00 0.00 0.00 2.40
3420 5079 3.632145 GGATTCATCACGGGCATTTTACT 59.368 43.478 0.00 0.00 0.00 2.24
3427 5086 0.545646 TCATGGATTCATCACGGGCA 59.454 50.000 0.00 0.00 0.00 5.36
3434 5093 7.377928 CGAAAATGCTAAACTCATGGATTCATC 59.622 37.037 0.00 0.00 0.00 2.92
3446 5105 7.724305 TGACTAAGAACGAAAATGCTAAACT 57.276 32.000 0.00 0.00 0.00 2.66
3489 5148 1.389555 ATGCCATCACACTCATGCAG 58.610 50.000 0.00 0.00 0.00 4.41
3670 5736 3.004734 ACCTGAAAAGAAACGCAGATTGG 59.995 43.478 0.00 0.00 0.00 3.16
3943 6014 4.280174 GCCTCCACATCATCTGCATTAAAT 59.720 41.667 0.00 0.00 0.00 1.40
4450 6522 6.039717 GCATGCATAATGAAAAGAGGGAAGTA 59.960 38.462 14.21 0.00 38.72 2.24
4451 6523 5.163478 GCATGCATAATGAAAAGAGGGAAGT 60.163 40.000 14.21 0.00 38.72 3.01
4452 6524 5.163488 TGCATGCATAATGAAAAGAGGGAAG 60.163 40.000 18.46 0.00 38.72 3.46
4453 6525 4.710865 TGCATGCATAATGAAAAGAGGGAA 59.289 37.500 18.46 0.00 38.72 3.97
4454 6526 4.279982 TGCATGCATAATGAAAAGAGGGA 58.720 39.130 18.46 0.00 38.72 4.20
4455 6527 4.659111 TGCATGCATAATGAAAAGAGGG 57.341 40.909 18.46 0.00 38.72 4.30
4456 6528 5.838529 TCATGCATGCATAATGAAAAGAGG 58.161 37.500 31.73 15.26 38.72 3.69
4457 6529 6.504398 ACTCATGCATGCATAATGAAAAGAG 58.496 36.000 31.73 28.48 38.72 2.85
4458 6530 6.459670 ACTCATGCATGCATAATGAAAAGA 57.540 33.333 31.73 20.18 38.72 2.52
4459 6531 7.423199 ACTACTCATGCATGCATAATGAAAAG 58.577 34.615 31.73 24.13 38.72 2.27
4460 6532 7.337480 ACTACTCATGCATGCATAATGAAAA 57.663 32.000 31.73 15.78 38.72 2.29
4544 6644 6.114767 ACTCCAAAACAAACATTTGCAGAAT 58.885 32.000 4.25 0.00 41.79 2.40
4724 6851 2.514824 GCCCTTGATCGACAGCCC 60.515 66.667 0.00 0.00 0.00 5.19
4765 6892 5.946942 ATGTGATGGTCAGATGACTTACT 57.053 39.130 12.43 0.00 44.20 2.24
4774 6901 5.355071 GTCAAGCATAAATGTGATGGTCAGA 59.645 40.000 0.00 0.00 34.01 3.27
4983 7177 7.549134 TGCAAGAAATATAAGGTACTGTGTCAG 59.451 37.037 0.00 0.00 40.86 3.51
5275 7486 7.148255 GGACTAAATGTGCATTGATTCAGTACA 60.148 37.037 0.00 0.58 36.96 2.90
5324 7540 6.097554 TGGAGCCATCAACTTAAACTTTCAAA 59.902 34.615 0.00 0.00 0.00 2.69
5382 7870 7.651304 CACATATAACTAAAGGAGAGAGCACAG 59.349 40.741 0.00 0.00 0.00 3.66
5859 8381 5.485209 AACGGAACTTAGAGAAGTGGAAT 57.515 39.130 0.00 0.00 45.50 3.01
5902 8424 1.388547 TTCAGAAACCACTGGTGCAC 58.611 50.000 8.80 8.80 35.34 4.57
5984 8506 1.358787 TGGAGGATTGGATGTTTGCCT 59.641 47.619 0.00 0.00 0.00 4.75
6007 8529 2.153034 AAGTGAGACTAGCTCCCTCC 57.847 55.000 10.44 0.00 43.26 4.30
6115 8637 8.421249 AATTTAATCCTCCTTTTGACATGACA 57.579 30.769 0.00 0.00 0.00 3.58
6172 8694 5.813672 GCGTGGTCCAAATAATACTTACTCA 59.186 40.000 0.00 0.00 0.00 3.41
6202 8724 4.594920 TCATAGATCTAAAGGGCCTGGAAG 59.405 45.833 6.92 5.14 0.00 3.46
6208 8730 6.357367 TGAAACTTCATAGATCTAAAGGGCC 58.643 40.000 15.46 0.00 31.01 5.80
6335 8860 5.146010 ACCCAATTTGCGTATTCACAATT 57.854 34.783 0.00 0.00 0.00 2.32
6336 8861 4.799564 ACCCAATTTGCGTATTCACAAT 57.200 36.364 0.00 0.00 0.00 2.71
6337 8862 5.416013 TGATACCCAATTTGCGTATTCACAA 59.584 36.000 7.86 0.00 0.00 3.33
6338 8863 4.944317 TGATACCCAATTTGCGTATTCACA 59.056 37.500 7.86 0.87 0.00 3.58
6339 8864 5.493133 TGATACCCAATTTGCGTATTCAC 57.507 39.130 7.86 0.00 0.00 3.18
6340 8865 6.096141 ACAATGATACCCAATTTGCGTATTCA 59.904 34.615 7.86 7.87 0.00 2.57
6341 8866 6.503524 ACAATGATACCCAATTTGCGTATTC 58.496 36.000 7.86 3.70 0.00 1.75
6342 8867 6.463995 ACAATGATACCCAATTTGCGTATT 57.536 33.333 7.86 0.00 0.00 1.89
6343 8868 7.759489 ATACAATGATACCCAATTTGCGTAT 57.241 32.000 6.44 6.44 0.00 3.06
6344 8869 7.283354 TCAATACAATGATACCCAATTTGCGTA 59.717 33.333 0.00 0.00 0.00 4.42
6345 8870 6.096141 TCAATACAATGATACCCAATTTGCGT 59.904 34.615 0.00 0.00 0.00 5.24
6346 8871 6.502652 TCAATACAATGATACCCAATTTGCG 58.497 36.000 0.00 0.00 0.00 4.85
6347 8872 9.630098 CTATCAATACAATGATACCCAATTTGC 57.370 33.333 0.00 0.00 40.44 3.68
6349 8874 9.881773 ACCTATCAATACAATGATACCCAATTT 57.118 29.630 0.00 0.00 40.44 1.82
6433 8958 7.201884 GGGCTTGTACTTCTTTCCTAAACTTTT 60.202 37.037 0.00 0.00 0.00 2.27
6443 8968 4.009370 ACTCAGGGCTTGTACTTCTTTC 57.991 45.455 0.00 0.00 0.00 2.62
6736 9261 1.892474 TGGTTTGGCCAACTAGATTGC 59.108 47.619 20.35 1.07 45.94 3.56
6932 9472 6.825944 TCTTCTCTCTCTTCGATCTTCAAA 57.174 37.500 0.00 0.00 0.00 2.69
6942 9482 5.507985 GCTAGATGGCTTCTTCTCTCTCTTC 60.508 48.000 8.31 0.00 35.79 2.87


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.