Multiple sequence alignment - TraesCS4D01G331200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G331200 chr4D 100.000 5848 0 0 1 5848 489184490 489178643 0.000000e+00 10800.0
1 TraesCS4D01G331200 chr4D 95.890 73 3 0 3234 3306 489181181 489181109 1.030000e-22 119.0
2 TraesCS4D01G331200 chr4D 95.890 73 3 0 3310 3382 489181257 489181185 1.030000e-22 119.0
3 TraesCS4D01G331200 chr4B 89.689 3026 156 50 712 3680 627327182 627324256 0.000000e+00 3716.0
4 TraesCS4D01G331200 chr4B 89.563 709 45 16 4392 5082 627323674 627322977 0.000000e+00 872.0
5 TraesCS4D01G331200 chr4B 94.553 514 20 5 3874 4381 627324231 627323720 0.000000e+00 787.0
6 TraesCS4D01G331200 chr4B 94.483 290 12 4 5560 5848 627322774 627322488 1.500000e-120 444.0
7 TraesCS4D01G331200 chr4B 79.044 272 40 7 3310 3568 627324071 627323804 2.800000e-38 171.0
8 TraesCS4D01G331200 chr4B 96.053 76 3 0 3231 3306 627324595 627324520 2.210000e-24 124.0
9 TraesCS4D01G331200 chr4B 95.652 46 2 0 237 282 627328024 627327979 2.260000e-09 75.0
10 TraesCS4D01G331200 chr5A 92.293 2154 102 29 704 2822 670631518 670629394 0.000000e+00 3000.0
11 TraesCS4D01G331200 chr5A 94.665 956 25 9 4412 5361 670627533 670626598 0.000000e+00 1459.0
12 TraesCS4D01G331200 chr5A 91.250 1040 44 11 2824 3860 670629367 670628372 0.000000e+00 1373.0
13 TraesCS4D01G331200 chr5A 94.394 553 24 4 3840 4392 670628132 670627587 0.000000e+00 843.0
14 TraesCS4D01G331200 chr5A 88.922 334 18 9 5515 5848 670626067 670625753 1.530000e-105 394.0
15 TraesCS4D01G331200 chr5A 89.720 214 16 4 1 212 670817435 670817226 9.660000e-68 268.0
16 TraesCS4D01G331200 chr5A 80.443 271 36 9 3310 3568 670627944 670627679 2.150000e-44 191.0
17 TraesCS4D01G331200 chr5A 78.931 318 36 15 344 650 670631910 670631613 2.780000e-43 187.0
18 TraesCS4D01G331200 chr5A 85.256 156 12 7 5086 5240 685757699 685757844 3.650000e-32 150.0
19 TraesCS4D01G331200 chr5A 97.260 73 2 0 3310 3382 670628960 670628888 2.210000e-24 124.0
20 TraesCS4D01G331200 chr5A 94.595 74 4 0 2709 2782 5695917 5695990 1.330000e-21 115.0
21 TraesCS4D01G331200 chr5A 94.595 74 4 0 2709 2782 493820234 493820307 1.330000e-21 115.0
22 TraesCS4D01G331200 chr5A 94.595 74 4 0 3233 3306 670628884 670628811 1.330000e-21 115.0
23 TraesCS4D01G331200 chrUn 88.608 158 13 4 5090 5246 24687262 24687109 2.780000e-43 187.0
24 TraesCS4D01G331200 chr6A 86.709 158 20 1 5090 5246 601468957 601468800 2.170000e-39 174.0
25 TraesCS4D01G331200 chr6A 94.595 74 4 0 2709 2782 551840443 551840516 1.330000e-21 115.0
26 TraesCS4D01G331200 chr6A 94.545 55 3 0 2651 2705 532655140 532655086 1.040000e-12 86.1
27 TraesCS4D01G331200 chr6B 86.928 153 17 2 5090 5239 46358714 46358562 1.010000e-37 169.0
28 TraesCS4D01G331200 chr5D 85.430 151 22 0 5090 5240 207349240 207349090 2.180000e-34 158.0
29 TraesCS4D01G331200 chr3A 84.906 159 21 2 5091 5246 486931469 486931627 2.180000e-34 158.0
30 TraesCS4D01G331200 chr3A 85.526 152 19 3 5086 5236 336932292 336932441 7.850000e-34 156.0
31 TraesCS4D01G331200 chr3B 85.161 155 19 4 5086 5239 475386860 475387011 7.850000e-34 156.0
32 TraesCS4D01G331200 chr7A 94.667 75 3 1 2709 2782 652009317 652009243 1.330000e-21 115.0
33 TraesCS4D01G331200 chr7A 89.552 67 4 2 2640 2706 506684215 506684278 1.350000e-11 82.4
34 TraesCS4D01G331200 chr1A 94.595 74 4 0 2709 2782 478362935 478362862 1.330000e-21 115.0
35 TraesCS4D01G331200 chr7B 83.333 126 15 5 2657 2782 730141466 730141347 1.720000e-20 111.0
36 TraesCS4D01G331200 chr1B 82.540 126 16 5 2657 2782 614185497 614185378 8.010000e-19 106.0
37 TraesCS4D01G331200 chr1B 100.000 28 0 0 1022 1049 477220755 477220782 1.100000e-02 52.8
38 TraesCS4D01G331200 chr3D 82.609 115 15 4 2660 2769 589761218 589761332 4.820000e-16 97.1
39 TraesCS4D01G331200 chr2D 92.982 57 4 0 2650 2706 22958382 22958438 3.760000e-12 84.2
40 TraesCS4D01G331200 chr1D 94.444 54 3 0 2653 2706 211632427 211632374 3.760000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G331200 chr4D 489178643 489184490 5847 True 3679.333333 10800 97.260000 1 5848 3 chr4D.!!$R1 5847
1 TraesCS4D01G331200 chr4B 627322488 627328024 5536 True 884.142857 3716 91.291000 237 5848 7 chr4B.!!$R1 5611
2 TraesCS4D01G331200 chr5A 670625753 670631910 6157 True 854.000000 3000 90.305889 344 5848 9 chr5A.!!$R2 5504

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
454 482 0.168788 CTTGTCGCATTCCGCAACAT 59.831 50.0 0.00 0.0 42.60 2.71 F
1778 2332 0.108585 TTGGACCAGTGACTTGGCTC 59.891 55.0 0.00 0.0 42.18 4.70 F
2022 2583 0.322008 CAAGGCAGAACTGGGACTCC 60.322 60.0 3.99 0.0 0.00 3.85 F
3452 4064 0.510359 CGTGCAGTGCTGAAAGTCTC 59.490 55.0 17.60 0.0 35.30 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2146 2709 0.179073 CATAGGCAACCTCGACCTGG 60.179 60.0 1.91 0.00 34.61 4.45 R
3514 4134 0.107643 TGCACAGGGACACAATTCGA 59.892 50.0 0.00 0.00 0.00 3.71 R
3516 4136 1.317613 TGTGCACAGGGACACAATTC 58.682 50.0 17.42 0.00 43.48 2.17 R
5309 6255 0.038618 CAGCTGCATGCAAAGCTCAA 60.039 50.0 26.50 0.78 46.82 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 3.542969 AAAAAGGGGACAAGGCACTAT 57.457 42.857 0.00 0.00 38.49 2.12
27 28 2.514458 AAAGGGGACAAGGCACTATG 57.486 50.000 0.00 0.00 38.49 2.23
28 29 1.372501 AAGGGGACAAGGCACTATGT 58.627 50.000 0.00 0.00 38.49 2.29
29 30 1.372501 AGGGGACAAGGCACTATGTT 58.627 50.000 0.00 0.00 38.49 2.71
30 31 2.557869 AGGGGACAAGGCACTATGTTA 58.442 47.619 0.00 0.00 38.49 2.41
31 32 3.123273 AGGGGACAAGGCACTATGTTAT 58.877 45.455 0.00 0.00 38.49 1.89
32 33 4.303794 AGGGGACAAGGCACTATGTTATA 58.696 43.478 0.00 0.00 38.49 0.98
33 34 4.348168 AGGGGACAAGGCACTATGTTATAG 59.652 45.833 0.00 0.00 38.49 1.31
34 35 4.102681 GGGGACAAGGCACTATGTTATAGT 59.897 45.833 0.00 0.00 38.49 2.12
35 36 5.397559 GGGGACAAGGCACTATGTTATAGTT 60.398 44.000 0.00 0.00 38.49 2.24
36 37 6.183361 GGGGACAAGGCACTATGTTATAGTTA 60.183 42.308 0.00 0.00 38.49 2.24
37 38 7.450903 GGGACAAGGCACTATGTTATAGTTAT 58.549 38.462 0.00 0.00 38.49 1.89
38 39 8.591072 GGGACAAGGCACTATGTTATAGTTATA 58.409 37.037 0.00 0.00 38.49 0.98
65 66 8.942338 TTTGATACTCAGTTAAGCATATTCGT 57.058 30.769 0.00 0.00 0.00 3.85
66 67 8.942338 TTGATACTCAGTTAAGCATATTCGTT 57.058 30.769 0.00 0.00 0.00 3.85
67 68 8.352752 TGATACTCAGTTAAGCATATTCGTTG 57.647 34.615 0.00 0.00 0.00 4.10
68 69 8.194769 TGATACTCAGTTAAGCATATTCGTTGA 58.805 33.333 0.00 0.00 0.00 3.18
69 70 9.197694 GATACTCAGTTAAGCATATTCGTTGAT 57.802 33.333 0.00 0.00 0.00 2.57
71 72 8.942338 ACTCAGTTAAGCATATTCGTTGATAA 57.058 30.769 0.00 0.00 0.00 1.75
72 73 9.378551 ACTCAGTTAAGCATATTCGTTGATAAA 57.621 29.630 0.00 0.00 0.00 1.40
73 74 9.638300 CTCAGTTAAGCATATTCGTTGATAAAC 57.362 33.333 0.00 0.00 0.00 2.01
74 75 9.157104 TCAGTTAAGCATATTCGTTGATAAACA 57.843 29.630 0.00 0.00 0.00 2.83
75 76 9.935682 CAGTTAAGCATATTCGTTGATAAACAT 57.064 29.630 0.00 0.00 0.00 2.71
80 81 8.432110 AGCATATTCGTTGATAAACATACACA 57.568 30.769 0.00 0.00 0.00 3.72
81 82 8.335356 AGCATATTCGTTGATAAACATACACAC 58.665 33.333 0.00 0.00 0.00 3.82
82 83 7.586300 GCATATTCGTTGATAAACATACACACC 59.414 37.037 0.00 0.00 0.00 4.16
83 84 8.826710 CATATTCGTTGATAAACATACACACCT 58.173 33.333 0.00 0.00 0.00 4.00
84 85 6.474819 TTCGTTGATAAACATACACACCTG 57.525 37.500 0.00 0.00 0.00 4.00
85 86 5.543714 TCGTTGATAAACATACACACCTGT 58.456 37.500 0.00 0.00 0.00 4.00
86 87 5.992829 TCGTTGATAAACATACACACCTGTT 59.007 36.000 0.00 0.00 37.19 3.16
87 88 7.153315 TCGTTGATAAACATACACACCTGTTA 58.847 34.615 0.00 0.00 34.61 2.41
88 89 7.820386 TCGTTGATAAACATACACACCTGTTAT 59.180 33.333 0.00 0.00 34.61 1.89
89 90 9.089601 CGTTGATAAACATACACACCTGTTATA 57.910 33.333 0.00 0.00 34.61 0.98
105 106 8.561738 ACCTGTTATATTAGGTGACAAACAAG 57.438 34.615 7.45 0.00 45.30 3.16
106 107 8.380099 ACCTGTTATATTAGGTGACAAACAAGA 58.620 33.333 7.45 0.00 45.30 3.02
107 108 9.226606 CCTGTTATATTAGGTGACAAACAAGAA 57.773 33.333 0.00 0.00 0.00 2.52
112 113 5.843673 TTAGGTGACAAACAAGAAATGCA 57.156 34.783 0.00 0.00 0.00 3.96
113 114 4.734398 AGGTGACAAACAAGAAATGCAA 57.266 36.364 0.00 0.00 0.00 4.08
114 115 5.083533 AGGTGACAAACAAGAAATGCAAA 57.916 34.783 0.00 0.00 0.00 3.68
115 116 5.111293 AGGTGACAAACAAGAAATGCAAAG 58.889 37.500 0.00 0.00 0.00 2.77
116 117 5.105392 AGGTGACAAACAAGAAATGCAAAGA 60.105 36.000 0.00 0.00 0.00 2.52
117 118 5.754890 GGTGACAAACAAGAAATGCAAAGAT 59.245 36.000 0.00 0.00 0.00 2.40
118 119 6.922957 GGTGACAAACAAGAAATGCAAAGATA 59.077 34.615 0.00 0.00 0.00 1.98
119 120 7.599998 GGTGACAAACAAGAAATGCAAAGATAT 59.400 33.333 0.00 0.00 0.00 1.63
120 121 9.624697 GTGACAAACAAGAAATGCAAAGATATA 57.375 29.630 0.00 0.00 0.00 0.86
150 151 8.955061 ATAATGTCAAACAAAAGAACATCTCG 57.045 30.769 0.00 0.00 0.00 4.04
151 152 5.168526 TGTCAAACAAAAGAACATCTCGG 57.831 39.130 0.00 0.00 0.00 4.63
152 153 4.036262 TGTCAAACAAAAGAACATCTCGGG 59.964 41.667 0.00 0.00 0.00 5.14
153 154 4.036380 GTCAAACAAAAGAACATCTCGGGT 59.964 41.667 0.00 0.00 0.00 5.28
154 155 4.036262 TCAAACAAAAGAACATCTCGGGTG 59.964 41.667 0.00 0.00 0.00 4.61
155 156 2.504367 ACAAAAGAACATCTCGGGTGG 58.496 47.619 0.00 0.00 0.00 4.61
156 157 1.200020 CAAAAGAACATCTCGGGTGGC 59.800 52.381 0.00 0.00 0.00 5.01
157 158 0.322546 AAAGAACATCTCGGGTGGCC 60.323 55.000 0.00 0.00 0.00 5.36
158 159 1.488705 AAGAACATCTCGGGTGGCCA 61.489 55.000 0.00 0.00 0.00 5.36
159 160 1.002624 GAACATCTCGGGTGGCCAA 60.003 57.895 7.24 0.00 0.00 4.52
160 161 1.303317 AACATCTCGGGTGGCCAAC 60.303 57.895 14.15 14.15 0.00 3.77
161 162 1.779061 AACATCTCGGGTGGCCAACT 61.779 55.000 22.79 0.00 0.00 3.16
162 163 0.907704 ACATCTCGGGTGGCCAACTA 60.908 55.000 22.79 8.58 0.00 2.24
163 164 0.469917 CATCTCGGGTGGCCAACTAT 59.530 55.000 22.79 6.69 0.00 2.12
164 165 1.691976 CATCTCGGGTGGCCAACTATA 59.308 52.381 22.79 5.36 0.00 1.31
165 166 2.097110 TCTCGGGTGGCCAACTATAT 57.903 50.000 22.79 0.00 0.00 0.86
166 167 1.968493 TCTCGGGTGGCCAACTATATC 59.032 52.381 22.79 1.64 0.00 1.63
167 168 1.691976 CTCGGGTGGCCAACTATATCA 59.308 52.381 22.79 0.00 0.00 2.15
168 169 2.303022 CTCGGGTGGCCAACTATATCAT 59.697 50.000 22.79 0.00 0.00 2.45
169 170 3.512496 TCGGGTGGCCAACTATATCATA 58.488 45.455 22.79 0.00 0.00 2.15
170 171 4.101114 TCGGGTGGCCAACTATATCATAT 58.899 43.478 22.79 0.00 0.00 1.78
171 172 4.081142 TCGGGTGGCCAACTATATCATATG 60.081 45.833 22.79 0.00 0.00 1.78
172 173 4.081142 CGGGTGGCCAACTATATCATATGA 60.081 45.833 22.79 8.10 0.00 2.15
173 174 5.431765 GGGTGGCCAACTATATCATATGAG 58.568 45.833 22.79 0.00 0.00 2.90
174 175 4.878397 GGTGGCCAACTATATCATATGAGC 59.122 45.833 15.48 6.20 0.00 4.26
175 176 4.568359 GTGGCCAACTATATCATATGAGCG 59.432 45.833 7.24 2.17 0.00 5.03
176 177 4.466015 TGGCCAACTATATCATATGAGCGA 59.534 41.667 0.61 1.05 0.00 4.93
177 178 5.046529 GGCCAACTATATCATATGAGCGAG 58.953 45.833 11.78 9.74 0.00 5.03
178 179 4.505922 GCCAACTATATCATATGAGCGAGC 59.494 45.833 11.78 2.65 0.00 5.03
179 180 5.654497 CCAACTATATCATATGAGCGAGCA 58.346 41.667 11.78 0.00 0.00 4.26
180 181 6.101997 CCAACTATATCATATGAGCGAGCAA 58.898 40.000 11.78 0.00 0.00 3.91
181 182 6.035435 CCAACTATATCATATGAGCGAGCAAC 59.965 42.308 11.78 0.00 0.00 4.17
182 183 5.655488 ACTATATCATATGAGCGAGCAACC 58.345 41.667 11.78 0.00 0.00 3.77
183 184 2.175878 ATCATATGAGCGAGCAACCC 57.824 50.000 11.78 0.00 0.00 4.11
184 185 0.829990 TCATATGAGCGAGCAACCCA 59.170 50.000 0.00 0.00 0.00 4.51
185 186 0.940126 CATATGAGCGAGCAACCCAC 59.060 55.000 0.00 0.00 0.00 4.61
186 187 0.833287 ATATGAGCGAGCAACCCACT 59.167 50.000 0.00 0.00 0.00 4.00
187 188 0.175760 TATGAGCGAGCAACCCACTC 59.824 55.000 0.00 0.00 0.00 3.51
188 189 1.830587 ATGAGCGAGCAACCCACTCA 61.831 55.000 0.00 0.00 41.28 3.41
189 190 1.739562 GAGCGAGCAACCCACTCAG 60.740 63.158 0.00 0.00 33.58 3.35
190 191 2.031163 GCGAGCAACCCACTCAGT 59.969 61.111 0.00 0.00 33.58 3.41
191 192 1.598130 GCGAGCAACCCACTCAGTT 60.598 57.895 0.00 0.00 33.58 3.16
192 193 1.569479 GCGAGCAACCCACTCAGTTC 61.569 60.000 0.00 0.00 33.58 3.01
193 194 0.249868 CGAGCAACCCACTCAGTTCA 60.250 55.000 0.00 0.00 33.58 3.18
194 195 1.810031 CGAGCAACCCACTCAGTTCAA 60.810 52.381 0.00 0.00 33.58 2.69
195 196 2.508526 GAGCAACCCACTCAGTTCAAT 58.491 47.619 0.00 0.00 34.18 2.57
196 197 2.485814 GAGCAACCCACTCAGTTCAATC 59.514 50.000 0.00 0.00 34.18 2.67
197 198 1.541588 GCAACCCACTCAGTTCAATCC 59.458 52.381 0.00 0.00 0.00 3.01
198 199 2.862541 CAACCCACTCAGTTCAATCCA 58.137 47.619 0.00 0.00 0.00 3.41
199 200 2.554032 CAACCCACTCAGTTCAATCCAC 59.446 50.000 0.00 0.00 0.00 4.02
200 201 2.057922 ACCCACTCAGTTCAATCCACT 58.942 47.619 0.00 0.00 0.00 4.00
201 202 3.248024 ACCCACTCAGTTCAATCCACTA 58.752 45.455 0.00 0.00 0.00 2.74
202 203 3.846588 ACCCACTCAGTTCAATCCACTAT 59.153 43.478 0.00 0.00 0.00 2.12
203 204 4.080863 ACCCACTCAGTTCAATCCACTATC 60.081 45.833 0.00 0.00 0.00 2.08
204 205 4.163078 CCCACTCAGTTCAATCCACTATCT 59.837 45.833 0.00 0.00 0.00 1.98
205 206 5.355596 CCACTCAGTTCAATCCACTATCTC 58.644 45.833 0.00 0.00 0.00 2.75
206 207 5.128499 CCACTCAGTTCAATCCACTATCTCT 59.872 44.000 0.00 0.00 0.00 3.10
207 208 6.272318 CACTCAGTTCAATCCACTATCTCTC 58.728 44.000 0.00 0.00 0.00 3.20
208 209 6.096705 CACTCAGTTCAATCCACTATCTCTCT 59.903 42.308 0.00 0.00 0.00 3.10
209 210 6.321181 ACTCAGTTCAATCCACTATCTCTCTC 59.679 42.308 0.00 0.00 0.00 3.20
210 211 6.430864 TCAGTTCAATCCACTATCTCTCTCT 58.569 40.000 0.00 0.00 0.00 3.10
211 212 6.545666 TCAGTTCAATCCACTATCTCTCTCTC 59.454 42.308 0.00 0.00 0.00 3.20
212 213 6.547141 CAGTTCAATCCACTATCTCTCTCTCT 59.453 42.308 0.00 0.00 0.00 3.10
213 214 6.772716 AGTTCAATCCACTATCTCTCTCTCTC 59.227 42.308 0.00 0.00 0.00 3.20
214 215 5.630121 TCAATCCACTATCTCTCTCTCTCC 58.370 45.833 0.00 0.00 0.00 3.71
215 216 4.657814 ATCCACTATCTCTCTCTCTCCC 57.342 50.000 0.00 0.00 0.00 4.30
216 217 3.675613 TCCACTATCTCTCTCTCTCCCT 58.324 50.000 0.00 0.00 0.00 4.20
217 218 4.051478 TCCACTATCTCTCTCTCTCCCTT 58.949 47.826 0.00 0.00 0.00 3.95
218 219 4.104102 TCCACTATCTCTCTCTCTCCCTTC 59.896 50.000 0.00 0.00 0.00 3.46
219 220 4.104738 CCACTATCTCTCTCTCTCCCTTCT 59.895 50.000 0.00 0.00 0.00 2.85
220 221 5.308825 CACTATCTCTCTCTCTCCCTTCTC 58.691 50.000 0.00 0.00 0.00 2.87
221 222 5.072329 CACTATCTCTCTCTCTCCCTTCTCT 59.928 48.000 0.00 0.00 0.00 3.10
222 223 4.713792 ATCTCTCTCTCTCCCTTCTCTC 57.286 50.000 0.00 0.00 0.00 3.20
223 224 3.736094 TCTCTCTCTCTCCCTTCTCTCT 58.264 50.000 0.00 0.00 0.00 3.10
224 225 4.890988 TCTCTCTCTCTCCCTTCTCTCTA 58.109 47.826 0.00 0.00 0.00 2.43
225 226 5.476983 TCTCTCTCTCTCCCTTCTCTCTAT 58.523 45.833 0.00 0.00 0.00 1.98
226 227 5.911178 TCTCTCTCTCTCCCTTCTCTCTATT 59.089 44.000 0.00 0.00 0.00 1.73
227 228 6.389869 TCTCTCTCTCTCCCTTCTCTCTATTT 59.610 42.308 0.00 0.00 0.00 1.40
228 229 6.980577 TCTCTCTCTCCCTTCTCTCTATTTT 58.019 40.000 0.00 0.00 0.00 1.82
229 230 6.833416 TCTCTCTCTCCCTTCTCTCTATTTTG 59.167 42.308 0.00 0.00 0.00 2.44
230 231 5.896678 TCTCTCTCCCTTCTCTCTATTTTGG 59.103 44.000 0.00 0.00 0.00 3.28
231 232 4.965532 TCTCTCCCTTCTCTCTATTTTGGG 59.034 45.833 0.00 0.00 34.76 4.12
232 233 4.040755 TCTCCCTTCTCTCTATTTTGGGG 58.959 47.826 0.00 0.00 34.27 4.96
233 234 3.123273 TCCCTTCTCTCTATTTTGGGGG 58.877 50.000 0.00 0.00 34.27 5.40
234 235 3.123273 CCCTTCTCTCTATTTTGGGGGA 58.877 50.000 0.00 0.00 33.68 4.81
235 236 3.724209 CCCTTCTCTCTATTTTGGGGGAT 59.276 47.826 0.00 0.00 33.68 3.85
242 243 5.952387 TCTCTATTTTGGGGGATACAATGG 58.048 41.667 0.00 0.00 39.74 3.16
275 276 7.094549 CCATTCCCGTTAATGAAACTCAAGTTA 60.095 37.037 8.18 0.00 38.84 2.24
288 305 8.721478 TGAAACTCAAGTTATACATTGCTTCTC 58.279 33.333 0.00 0.00 37.25 2.87
289 306 7.617041 AACTCAAGTTATACATTGCTTCTCC 57.383 36.000 0.00 0.00 36.32 3.71
292 309 5.105106 TCAAGTTATACATTGCTTCTCCCGA 60.105 40.000 0.00 0.00 0.00 5.14
295 312 6.692486 AGTTATACATTGCTTCTCCCGATAG 58.308 40.000 0.00 0.00 0.00 2.08
298 315 2.224161 ACATTGCTTCTCCCGATAGAGC 60.224 50.000 0.00 0.00 39.76 4.09
300 317 0.752009 TGCTTCTCCCGATAGAGCGT 60.752 55.000 0.00 0.00 39.76 5.07
301 318 0.386113 GCTTCTCCCGATAGAGCGTT 59.614 55.000 0.00 0.00 39.76 4.84
307 324 3.949754 TCTCCCGATAGAGCGTTAAGAAA 59.050 43.478 0.00 0.00 39.76 2.52
308 325 4.037858 TCCCGATAGAGCGTTAAGAAAC 57.962 45.455 0.00 0.00 39.76 2.78
309 326 3.444742 TCCCGATAGAGCGTTAAGAAACA 59.555 43.478 0.00 0.00 34.52 2.83
310 327 4.098960 TCCCGATAGAGCGTTAAGAAACAT 59.901 41.667 0.00 0.00 34.52 2.71
313 330 6.144080 CCCGATAGAGCGTTAAGAAACATAAG 59.856 42.308 0.00 0.00 34.52 1.73
324 341 7.534239 CGTTAAGAAACATAAGAAAAGAGCACC 59.466 37.037 0.00 0.00 35.16 5.01
338 355 1.197721 GAGCACCGAACAACCATGAAG 59.802 52.381 0.00 0.00 0.00 3.02
339 356 0.951558 GCACCGAACAACCATGAAGT 59.048 50.000 0.00 0.00 0.00 3.01
340 357 1.069227 GCACCGAACAACCATGAAGTC 60.069 52.381 0.00 0.00 0.00 3.01
341 358 2.217750 CACCGAACAACCATGAAGTCA 58.782 47.619 0.00 0.00 0.00 3.41
342 359 2.813754 CACCGAACAACCATGAAGTCAT 59.186 45.455 0.00 0.00 36.96 3.06
391 408 4.761227 TCGTTTTACCACAAAACCTATCCC 59.239 41.667 6.95 0.00 36.94 3.85
407 435 1.348064 TCCCTTCGACATGTTGGAGT 58.652 50.000 18.56 0.00 0.00 3.85
421 449 2.110213 GAGTCCACCCACACGCAA 59.890 61.111 0.00 0.00 0.00 4.85
425 453 0.889186 GTCCACCCACACGCAAGATT 60.889 55.000 0.00 0.00 43.62 2.40
426 454 0.687920 TCCACCCACACGCAAGATTA 59.312 50.000 0.00 0.00 43.62 1.75
439 467 3.617531 CGCAAGATTACAGACCTCCTTGT 60.618 47.826 0.00 0.00 43.02 3.16
453 481 1.573932 CTTGTCGCATTCCGCAACA 59.426 52.632 0.00 0.00 42.60 3.33
454 482 0.168788 CTTGTCGCATTCCGCAACAT 59.831 50.000 0.00 0.00 42.60 2.71
457 485 1.259316 GTCGCATTCCGCAACATTTC 58.741 50.000 0.00 0.00 42.60 2.17
458 486 0.877743 TCGCATTCCGCAACATTTCA 59.122 45.000 0.00 0.00 42.60 2.69
459 487 1.268079 TCGCATTCCGCAACATTTCAA 59.732 42.857 0.00 0.00 42.60 2.69
460 488 1.386412 CGCATTCCGCAACATTTCAAC 59.614 47.619 0.00 0.00 42.60 3.18
462 490 1.984990 CATTCCGCAACATTTCAACCG 59.015 47.619 0.00 0.00 0.00 4.44
463 491 0.318275 TTCCGCAACATTTCAACCGC 60.318 50.000 0.00 0.00 0.00 5.68
482 510 1.400629 GCCTTTTCCGCGGTACTTTTC 60.401 52.381 27.15 6.62 0.00 2.29
501 529 1.733402 CGTGGCCTTTGGTTTCAGCA 61.733 55.000 3.32 0.00 0.00 4.41
518 546 2.111041 GCAAATCGCTTGGCAGATAC 57.889 50.000 0.00 0.00 37.77 2.24
559 587 3.052338 CCTACCAGGGTAAGGACTAAGGA 60.052 52.174 0.00 0.00 0.00 3.36
583 1042 7.283354 GGAGGAAGTTTATAACCATCCTTTCTG 59.717 40.741 8.05 0.00 44.00 3.02
606 1065 8.350722 TCTGGTATTACTATTCGTGATGACTTC 58.649 37.037 0.00 0.00 0.00 3.01
608 1067 8.135529 TGGTATTACTATTCGTGATGACTTCTG 58.864 37.037 0.00 0.00 0.00 3.02
624 1083 9.383519 GATGACTTCTGTTAGTCCATAAATTCA 57.616 33.333 0.00 0.00 43.11 2.57
650 1109 1.897802 CTTCAGGCCTCCAATTTTGCT 59.102 47.619 0.00 0.00 0.00 3.91
651 1110 2.897271 TCAGGCCTCCAATTTTGCTA 57.103 45.000 0.00 0.00 0.00 3.49
655 1114 3.703052 CAGGCCTCCAATTTTGCTATCTT 59.297 43.478 0.00 0.00 0.00 2.40
657 1116 5.537674 CAGGCCTCCAATTTTGCTATCTTAT 59.462 40.000 0.00 0.00 0.00 1.73
658 1117 6.716628 CAGGCCTCCAATTTTGCTATCTTATA 59.283 38.462 0.00 0.00 0.00 0.98
659 1118 6.944862 AGGCCTCCAATTTTGCTATCTTATAG 59.055 38.462 0.00 0.00 0.00 1.31
739 1240 7.600375 TCACAGATCTAGTGACTTTGAAATGAC 59.400 37.037 18.29 0.00 40.80 3.06
921 1424 0.327924 ATCTCAACGGTGGCATCCAA 59.672 50.000 0.00 0.00 34.18 3.53
923 1426 1.586154 CTCAACGGTGGCATCCAACC 61.586 60.000 0.00 0.00 38.12 3.77
924 1427 1.900981 CAACGGTGGCATCCAACCA 60.901 57.895 0.00 0.00 38.12 3.67
1321 1845 4.825679 CCCAGGTCCCTCCCCCTC 62.826 77.778 0.00 0.00 36.75 4.30
1322 1846 4.825679 CCAGGTCCCTCCCCCTCC 62.826 77.778 0.00 0.00 36.75 4.30
1323 1847 4.825679 CAGGTCCCTCCCCCTCCC 62.826 77.778 0.00 0.00 36.75 4.30
1325 1849 4.500826 GGTCCCTCCCCCTCCCTC 62.501 77.778 0.00 0.00 0.00 4.30
1326 1850 4.500826 GTCCCTCCCCCTCCCTCC 62.501 77.778 0.00 0.00 0.00 4.30
1329 1853 3.711782 CCTCCCCCTCCCTCCCTT 61.712 72.222 0.00 0.00 0.00 3.95
1330 1854 2.040359 CTCCCCCTCCCTCCCTTC 60.040 72.222 0.00 0.00 0.00 3.46
1331 1855 3.707189 TCCCCCTCCCTCCCTTCC 61.707 72.222 0.00 0.00 0.00 3.46
1332 1856 3.711782 CCCCCTCCCTCCCTTCCT 61.712 72.222 0.00 0.00 0.00 3.36
1333 1857 2.040359 CCCCTCCCTCCCTTCCTC 60.040 72.222 0.00 0.00 0.00 3.71
1334 1858 2.040359 CCCTCCCTCCCTTCCTCC 60.040 72.222 0.00 0.00 0.00 4.30
1335 1859 2.040359 CCTCCCTCCCTTCCTCCC 60.040 72.222 0.00 0.00 0.00 4.30
1336 1860 2.040359 CTCCCTCCCTTCCTCCCC 60.040 72.222 0.00 0.00 0.00 4.81
1337 1861 3.707189 TCCCTCCCTTCCTCCCCC 61.707 72.222 0.00 0.00 0.00 5.40
1363 1887 3.083349 TCCTCCACTCCATGCCGG 61.083 66.667 0.00 0.00 0.00 6.13
1384 1909 3.112075 CTTTCCGCGCTCGCTTGA 61.112 61.111 5.56 6.04 39.32 3.02
1392 1917 1.059994 CGCTCGCTTGATGCTCAAC 59.940 57.895 0.00 0.00 40.11 3.18
1411 1936 7.031975 GCTCAACTGAATCCATCTTTAAAAGG 58.968 38.462 0.00 0.00 0.00 3.11
1428 1953 4.437682 AAAGGATGCTTCGATTATCCCA 57.562 40.909 15.49 0.00 41.00 4.37
1429 1954 3.409026 AGGATGCTTCGATTATCCCAC 57.591 47.619 15.49 0.00 41.00 4.61
1487 2014 8.385111 CAATCATCAAATTGGTAATGCAAGAAC 58.615 33.333 0.00 0.00 33.80 3.01
1491 2018 0.519519 TTGGTAATGCAAGAACGGCG 59.480 50.000 4.80 4.80 0.00 6.46
1492 2019 0.320858 TGGTAATGCAAGAACGGCGA 60.321 50.000 16.62 0.00 0.00 5.54
1551 2091 6.379133 TCAGGTTACAATCTACTTCCGTACAT 59.621 38.462 0.00 0.00 0.00 2.29
1552 2092 6.475727 CAGGTTACAATCTACTTCCGTACATG 59.524 42.308 0.00 0.00 0.00 3.21
1633 2176 2.558378 CATGTGATGAATCGAGGCTGT 58.442 47.619 0.00 0.00 0.00 4.40
1701 2249 7.236640 TGGTAGCACTATTTGTATATCCATGGA 59.763 37.037 18.88 18.88 0.00 3.41
1702 2250 7.549488 GGTAGCACTATTTGTATATCCATGGAC 59.451 40.741 18.99 5.34 0.00 4.02
1778 2332 0.108585 TTGGACCAGTGACTTGGCTC 59.891 55.000 0.00 0.00 42.18 4.70
1814 2368 6.004574 AGGGAAGGAGTGTAAATTTCTGTTC 58.995 40.000 0.00 0.00 0.00 3.18
1863 2417 2.858839 CCCGGTTTTTCTACGCAATTC 58.141 47.619 0.00 0.00 0.00 2.17
2007 2568 5.818136 TCTTTCAACTGTCTGTTTCAAGG 57.182 39.130 9.15 1.36 36.63 3.61
2009 2570 2.997980 TCAACTGTCTGTTTCAAGGCA 58.002 42.857 0.00 0.00 36.63 4.75
2022 2583 0.322008 CAAGGCAGAACTGGGACTCC 60.322 60.000 3.99 0.00 0.00 3.85
2035 2596 5.953571 ACTGGGACTCCTAAAAGAAACAAT 58.046 37.500 0.00 0.00 0.00 2.71
2036 2597 6.373759 ACTGGGACTCCTAAAAGAAACAATT 58.626 36.000 0.00 0.00 0.00 2.32
2042 2603 7.176690 GGACTCCTAAAAGAAACAATTGGATCA 59.823 37.037 10.83 0.00 0.00 2.92
2097 2660 2.813061 ACAGATTTTGTTGCACACAGC 58.187 42.857 0.00 0.00 36.31 4.40
2133 2696 1.061131 GATGCGATGTTTGACTCCGTG 59.939 52.381 0.00 0.00 0.00 4.94
2146 2709 2.737252 GACTCCGTGTCCTGTTTCATTC 59.263 50.000 0.00 0.00 39.69 2.67
2220 2783 1.448985 GCTGGCAAGGTTGTCGATAA 58.551 50.000 0.00 0.00 35.00 1.75
2401 2964 1.557099 ATGCGAGTGGAACCTCTACA 58.443 50.000 0.00 0.00 37.80 2.74
2416 2979 4.716784 ACCTCTACATCTTTACCATCAGCA 59.283 41.667 0.00 0.00 0.00 4.41
2464 3027 1.745489 CCTAGCAACAGGGTTCGGC 60.745 63.158 0.00 0.00 31.47 5.54
2538 3101 5.123186 TCCACCACTTTGTTATCGCTATTTG 59.877 40.000 0.00 0.00 0.00 2.32
2539 3102 4.793216 CACCACTTTGTTATCGCTATTTGC 59.207 41.667 0.00 0.00 38.57 3.68
2591 3156 6.203338 ACATTTAGTACGGTTCGAACATGTTT 59.797 34.615 28.24 18.11 0.00 2.83
2626 3191 2.324541 ACACTCTCTGTCTCTGGCTTT 58.675 47.619 0.00 0.00 0.00 3.51
2627 3192 2.036992 ACACTCTCTGTCTCTGGCTTTG 59.963 50.000 0.00 0.00 0.00 2.77
2632 3197 1.074405 TCTGTCTCTGGCTTTGGCATT 59.926 47.619 0.00 0.00 40.87 3.56
2792 3368 6.613755 TTACAGAGGTAGTTGTTTTGAAGC 57.386 37.500 0.00 0.00 0.00 3.86
2844 3445 0.607489 CTTGTTCTGCTCACCTGGGG 60.607 60.000 0.00 0.00 0.00 4.96
2851 3452 1.288508 TGCTCACCTGGGGGCATTAT 61.289 55.000 7.85 0.00 35.63 1.28
2855 3456 3.490348 CTCACCTGGGGGCATTATTTAG 58.510 50.000 0.00 0.00 35.63 1.85
3081 3686 6.668283 AGAGGTACTTGTATGCTAAGAAAGGA 59.332 38.462 0.00 0.00 41.55 3.36
3129 3734 3.838317 TGTTGGCTGTAAGGATGAGTAGT 59.162 43.478 0.00 0.00 0.00 2.73
3144 3749 7.230510 AGGATGAGTAGTAGAGATTACTTGCAG 59.769 40.741 0.00 0.00 28.81 4.41
3158 3763 3.678289 ACTTGCAGTGCATGAACTCATA 58.322 40.909 31.17 8.86 38.76 2.15
3324 3930 4.261801 GCATGCCTTTTAGACTAGGTCAA 58.738 43.478 6.36 0.00 34.60 3.18
3340 3946 3.891366 AGGTCAACAGTTTCCCAAGATTG 59.109 43.478 1.67 0.00 0.00 2.67
3384 3990 3.991773 GCCTTGGCATTGTATTGCATATG 59.008 43.478 6.79 0.00 44.59 1.78
3390 3996 6.247676 TGGCATTGTATTGCATATGGACTAT 58.752 36.000 4.56 0.00 44.59 2.12
3391 3997 6.375174 TGGCATTGTATTGCATATGGACTATC 59.625 38.462 4.56 0.00 44.59 2.08
3429 4041 5.049129 GTGAAACCTGGTTCAAAGAGATCAG 60.049 44.000 13.36 0.00 39.18 2.90
3452 4064 0.510359 CGTGCAGTGCTGAAAGTCTC 59.490 55.000 17.60 0.00 35.30 3.36
3455 4067 0.516439 GCAGTGCTGAAAGTCTCTGC 59.484 55.000 8.18 0.00 43.97 4.26
3463 4075 3.648009 CTGAAAGTCTCTGCGAACTTCT 58.352 45.455 0.00 0.00 0.00 2.85
3487 4099 5.841957 AGGGATACATTGTGAAGCAAATC 57.158 39.130 0.00 0.00 40.91 2.17
3488 4100 4.646492 AGGGATACATTGTGAAGCAAATCC 59.354 41.667 0.00 1.99 39.53 3.01
3489 4101 4.402155 GGGATACATTGTGAAGCAAATCCA 59.598 41.667 12.35 0.00 40.90 3.41
3490 4102 5.450965 GGGATACATTGTGAAGCAAATCCAG 60.451 44.000 12.35 0.00 40.90 3.86
3491 4103 5.126061 GGATACATTGTGAAGCAAATCCAGT 59.874 40.000 0.00 0.00 39.80 4.00
3492 4104 4.942761 ACATTGTGAAGCAAATCCAGTT 57.057 36.364 0.00 0.00 40.91 3.16
3493 4105 7.148086 GGATACATTGTGAAGCAAATCCAGTTA 60.148 37.037 0.00 0.00 39.80 2.24
3494 4106 6.594788 ACATTGTGAAGCAAATCCAGTTAT 57.405 33.333 0.00 0.00 40.91 1.89
3593 4213 4.322198 CCATGCAGCAATTTTACTCTTGGT 60.322 41.667 0.00 0.00 33.63 3.67
3630 4251 8.413229 ACAAAGTTGCTAGTGAATAAACATGTT 58.587 29.630 4.92 4.92 0.00 2.71
3688 4309 3.636282 ACCGGCTTTTGTGTTTGTATC 57.364 42.857 0.00 0.00 0.00 2.24
3692 4313 2.724174 GGCTTTTGTGTTTGTATCGCAC 59.276 45.455 0.00 0.00 0.00 5.34
3698 4319 2.482336 TGTGTTTGTATCGCACATGGAC 59.518 45.455 0.00 0.00 38.09 4.02
3750 4371 5.894807 ACACTTGGTTCAAAGAGACAAATG 58.105 37.500 0.00 0.00 0.00 2.32
3772 4393 2.621763 AGCGGTGCTGAAAGTTCTG 58.378 52.632 0.00 0.00 37.57 3.02
3773 4394 0.179045 AGCGGTGCTGAAAGTTCTGT 60.179 50.000 0.00 0.00 37.57 3.41
3774 4395 0.040958 GCGGTGCTGAAAGTTCTGTG 60.041 55.000 0.72 0.00 35.30 3.66
3775 4396 0.040958 CGGTGCTGAAAGTTCTGTGC 60.041 55.000 0.72 0.00 35.30 4.57
3776 4397 0.040958 GGTGCTGAAAGTTCTGTGCG 60.041 55.000 0.72 0.00 35.30 5.34
3777 4398 0.937304 GTGCTGAAAGTTCTGTGCGA 59.063 50.000 0.00 0.00 35.30 5.10
3778 4399 1.330521 GTGCTGAAAGTTCTGTGCGAA 59.669 47.619 0.00 0.00 35.30 4.70
3787 4408 3.944422 GTTCTGTGCGAACTTCAAAGA 57.056 42.857 0.00 0.00 46.74 2.52
3788 4409 3.866496 GTTCTGTGCGAACTTCAAAGAG 58.134 45.455 0.00 0.00 46.74 2.85
3789 4410 3.452755 TCTGTGCGAACTTCAAAGAGA 57.547 42.857 0.00 0.00 0.00 3.10
3997 4880 8.052141 TGATTATGGGATTGTTGTCATAGTTCA 58.948 33.333 0.00 0.00 0.00 3.18
4201 5089 9.125026 AGTTTTGTGTGAACTTCAGAGAAATAT 57.875 29.630 10.81 2.62 33.98 1.28
4208 5096 7.547019 TGTGAACTTCAGAGAAATATACTGCAG 59.453 37.037 13.48 13.48 32.87 4.41
4294 5182 8.627487 TGAGTGAAAACATAACATTGTCAAAC 57.373 30.769 0.00 0.00 0.00 2.93
4302 5190 6.913170 ACATAACATTGTCAAACCAGTGATC 58.087 36.000 0.00 0.00 0.00 2.92
4318 5206 6.151985 ACCAGTGATCTGTTACTTGAGAGTAG 59.848 42.308 0.00 0.00 37.91 2.57
4352 5240 1.185315 AAAAAGCCCATGGATCCACG 58.815 50.000 18.99 9.25 0.00 4.94
4392 5280 7.400599 AGGGTTATAATCTCGCGTATGATTA 57.599 36.000 22.77 22.77 38.84 1.75
4394 5282 8.475639 AGGGTTATAATCTCGCGTATGATTATT 58.524 33.333 29.29 20.58 40.75 1.40
4395 5283 9.095065 GGGTTATAATCTCGCGTATGATTATTT 57.905 33.333 29.29 19.41 40.75 1.40
4405 5293 9.864034 CTCGCGTATGATTATTTAATTTGACTT 57.136 29.630 5.77 0.00 0.00 3.01
4406 5294 9.644993 TCGCGTATGATTATTTAATTTGACTTG 57.355 29.630 5.77 0.00 0.00 3.16
4407 5295 8.409690 CGCGTATGATTATTTAATTTGACTTGC 58.590 33.333 0.00 0.00 0.00 4.01
4408 5296 8.690840 GCGTATGATTATTTAATTTGACTTGCC 58.309 33.333 0.00 0.00 0.00 4.52
4409 5297 9.729023 CGTATGATTATTTAATTTGACTTGCCA 57.271 29.630 0.00 0.00 0.00 4.92
4584 5510 1.133199 AGGAAACCTTGCCCAATGTCA 60.133 47.619 0.00 0.00 0.00 3.58
4590 5516 2.224992 ACCTTGCCCAATGTCATGTACA 60.225 45.455 0.00 0.00 43.86 2.90
4784 5710 2.693864 CTGGGCATCCACTCCCCT 60.694 66.667 0.00 0.00 41.92 4.79
5020 5960 0.602905 AGCCTTTTCTCCGTTGTCCG 60.603 55.000 0.00 0.00 0.00 4.79
5021 5961 1.866925 CCTTTTCTCCGTTGTCCGC 59.133 57.895 0.00 0.00 34.38 5.54
5141 6086 2.165641 GGTTTAAGCATTACACCTGGCC 59.834 50.000 0.00 0.00 45.60 5.36
5150 6095 1.578897 TACACCTGGCCTCTGCATAA 58.421 50.000 3.32 0.00 40.13 1.90
5172 6117 0.387239 GAGATGCACACGGCCAAAAC 60.387 55.000 2.24 0.00 43.89 2.43
5185 6130 2.483013 GGCCAAAACCAAGTCCAAGTTC 60.483 50.000 0.00 0.00 0.00 3.01
5189 6134 4.432712 CAAAACCAAGTCCAAGTTCCAAG 58.567 43.478 0.00 0.00 0.00 3.61
5198 6144 6.790232 AGTCCAAGTTCCAAGAAAATCAAA 57.210 33.333 0.00 0.00 0.00 2.69
5204 6150 5.988287 AGTTCCAAGAAAATCAAAAAGGCA 58.012 33.333 0.00 0.00 0.00 4.75
5214 6160 6.670695 AAATCAAAAAGGCAGGATACAAGT 57.329 33.333 0.00 0.00 41.41 3.16
5230 6176 9.201989 AGGATACAAGTAATCATGTGAAGACTA 57.798 33.333 0.00 0.00 41.41 2.59
5241 6187 6.398095 TCATGTGAAGACTATATAATGCCCG 58.602 40.000 0.00 0.00 0.00 6.13
5290 6236 5.044919 ACAAACCACATCATGAATCCTAGGA 60.045 40.000 15.46 15.46 0.00 2.94
5299 6245 7.501559 ACATCATGAATCCTAGGATGAAAACTG 59.498 37.037 25.20 18.94 38.87 3.16
5309 6255 1.551883 GATGAAAACTGGGCCTTGCAT 59.448 47.619 4.53 0.28 0.00 3.96
5384 6627 3.120165 GGGAGAACAACTTGCGAAGATTC 60.120 47.826 3.37 4.52 0.00 2.52
5422 6665 1.450312 GAAGTCGGATGGCACCCAG 60.450 63.158 0.00 0.00 36.75 4.45
5423 6666 1.899437 GAAGTCGGATGGCACCCAGA 61.899 60.000 0.00 0.00 36.75 3.86
5437 6680 4.442753 GGCACCCAGATTTTGTTTCTCAAA 60.443 41.667 0.00 0.00 43.24 2.69
5471 6714 8.169977 TGTGAAATTTATGAAGAACTTGCTCT 57.830 30.769 0.00 0.00 0.00 4.09
5472 6715 8.077991 TGTGAAATTTATGAAGAACTTGCTCTG 58.922 33.333 0.00 0.00 0.00 3.35
5484 6727 2.111756 CTTGCTCTGTTGCGTTGTTTC 58.888 47.619 0.00 0.00 35.36 2.78
5510 6753 3.512626 TGTGAAACGACAAGCTGCTTGT 61.513 45.455 39.45 39.45 45.98 3.16
5544 6867 2.633967 TCTACCGCCACTCCAGTAAAAA 59.366 45.455 0.00 0.00 0.00 1.94
5564 6887 0.703488 TCAAAGCCCCATGACCATGA 59.297 50.000 11.28 0.00 41.20 3.07
5565 6888 1.108776 CAAAGCCCCATGACCATGAG 58.891 55.000 11.28 0.00 41.20 2.90
5568 6891 1.150081 GCCCCATGACCATGAGAGG 59.850 63.158 11.28 9.60 41.20 3.69
5569 6892 1.348008 GCCCCATGACCATGAGAGGA 61.348 60.000 11.28 0.00 41.20 3.71
5617 6940 3.498774 ATGGGTGTGATCCAAGCTATC 57.501 47.619 0.00 0.00 37.87 2.08
5623 6946 4.262249 GGTGTGATCCAAGCTATCTAGTCC 60.262 50.000 0.00 0.00 0.00 3.85
5634 6957 7.375053 CAAGCTATCTAGTCCAGACCTAATTC 58.625 42.308 0.00 0.00 35.62 2.17
5787 7110 1.347062 TGCTCACCCAGATACACACA 58.653 50.000 0.00 0.00 0.00 3.72
5791 7114 1.623311 TCACCCAGATACACACACAGG 59.377 52.381 0.00 0.00 0.00 4.00
5828 7151 6.693978 CGATTTCATAATGAATCTGCTGCAAA 59.306 34.615 3.02 0.00 36.11 3.68
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 3.165071 CATAGTGCCTTGTCCCCTTTTT 58.835 45.455 0.00 0.00 0.00 1.94
8 9 1.710809 ACATAGTGCCTTGTCCCCTTT 59.289 47.619 0.00 0.00 0.00 3.11
9 10 1.372501 ACATAGTGCCTTGTCCCCTT 58.627 50.000 0.00 0.00 0.00 3.95
10 11 1.372501 AACATAGTGCCTTGTCCCCT 58.627 50.000 0.00 0.00 0.00 4.79
12 13 5.291905 ACTATAACATAGTGCCTTGTCCC 57.708 43.478 0.00 0.00 0.00 4.46
43 44 8.575565 TCAACGAATATGCTTAACTGAGTATC 57.424 34.615 0.00 0.00 0.00 2.24
46 47 8.942338 TTATCAACGAATATGCTTAACTGAGT 57.058 30.769 0.00 0.00 0.00 3.41
47 48 9.638300 GTTTATCAACGAATATGCTTAACTGAG 57.362 33.333 0.00 0.00 0.00 3.35
48 49 9.157104 TGTTTATCAACGAATATGCTTAACTGA 57.843 29.630 0.00 0.00 35.40 3.41
49 50 9.935682 ATGTTTATCAACGAATATGCTTAACTG 57.064 29.630 0.00 0.00 35.40 3.16
54 55 8.888716 TGTGTATGTTTATCAACGAATATGCTT 58.111 29.630 0.00 0.00 35.40 3.91
55 56 8.335356 GTGTGTATGTTTATCAACGAATATGCT 58.665 33.333 0.00 0.00 35.40 3.79
56 57 7.586300 GGTGTGTATGTTTATCAACGAATATGC 59.414 37.037 0.00 0.00 35.40 3.14
57 58 8.826710 AGGTGTGTATGTTTATCAACGAATATG 58.173 33.333 0.00 0.00 35.40 1.78
58 59 8.826710 CAGGTGTGTATGTTTATCAACGAATAT 58.173 33.333 0.00 0.00 35.40 1.28
59 60 7.820386 ACAGGTGTGTATGTTTATCAACGAATA 59.180 33.333 0.00 0.00 34.05 1.75
60 61 6.653320 ACAGGTGTGTATGTTTATCAACGAAT 59.347 34.615 0.00 0.00 34.05 3.34
61 62 5.992829 ACAGGTGTGTATGTTTATCAACGAA 59.007 36.000 0.00 0.00 34.05 3.85
62 63 5.543714 ACAGGTGTGTATGTTTATCAACGA 58.456 37.500 0.00 0.00 34.05 3.85
63 64 5.856126 ACAGGTGTGTATGTTTATCAACG 57.144 39.130 0.00 0.00 34.05 4.10
80 81 8.380099 TCTTGTTTGTCACCTAATATAACAGGT 58.620 33.333 3.35 3.35 46.29 4.00
81 82 8.786826 TCTTGTTTGTCACCTAATATAACAGG 57.213 34.615 2.21 2.21 37.97 4.00
86 87 9.237187 TGCATTTCTTGTTTGTCACCTAATATA 57.763 29.630 0.00 0.00 0.00 0.86
87 88 8.121305 TGCATTTCTTGTTTGTCACCTAATAT 57.879 30.769 0.00 0.00 0.00 1.28
88 89 7.517614 TGCATTTCTTGTTTGTCACCTAATA 57.482 32.000 0.00 0.00 0.00 0.98
89 90 6.403866 TGCATTTCTTGTTTGTCACCTAAT 57.596 33.333 0.00 0.00 0.00 1.73
90 91 5.843673 TGCATTTCTTGTTTGTCACCTAA 57.156 34.783 0.00 0.00 0.00 2.69
91 92 5.843673 TTGCATTTCTTGTTTGTCACCTA 57.156 34.783 0.00 0.00 0.00 3.08
92 93 4.734398 TTGCATTTCTTGTTTGTCACCT 57.266 36.364 0.00 0.00 0.00 4.00
93 94 5.108517 TCTTTGCATTTCTTGTTTGTCACC 58.891 37.500 0.00 0.00 0.00 4.02
94 95 6.833342 ATCTTTGCATTTCTTGTTTGTCAC 57.167 33.333 0.00 0.00 0.00 3.67
124 125 9.398170 CGAGATGTTCTTTTGTTTGACATTATT 57.602 29.630 0.00 0.00 0.00 1.40
125 126 8.023128 CCGAGATGTTCTTTTGTTTGACATTAT 58.977 33.333 0.00 0.00 0.00 1.28
126 127 7.359595 CCGAGATGTTCTTTTGTTTGACATTA 58.640 34.615 0.00 0.00 0.00 1.90
127 128 6.208644 CCGAGATGTTCTTTTGTTTGACATT 58.791 36.000 0.00 0.00 0.00 2.71
128 129 5.278463 CCCGAGATGTTCTTTTGTTTGACAT 60.278 40.000 0.00 0.00 0.00 3.06
129 130 4.036262 CCCGAGATGTTCTTTTGTTTGACA 59.964 41.667 0.00 0.00 0.00 3.58
130 131 4.036380 ACCCGAGATGTTCTTTTGTTTGAC 59.964 41.667 0.00 0.00 0.00 3.18
131 132 4.036262 CACCCGAGATGTTCTTTTGTTTGA 59.964 41.667 0.00 0.00 0.00 2.69
132 133 4.290155 CACCCGAGATGTTCTTTTGTTTG 58.710 43.478 0.00 0.00 0.00 2.93
133 134 3.317993 CCACCCGAGATGTTCTTTTGTTT 59.682 43.478 0.00 0.00 0.00 2.83
134 135 2.884639 CCACCCGAGATGTTCTTTTGTT 59.115 45.455 0.00 0.00 0.00 2.83
135 136 2.504367 CCACCCGAGATGTTCTTTTGT 58.496 47.619 0.00 0.00 0.00 2.83
136 137 1.200020 GCCACCCGAGATGTTCTTTTG 59.800 52.381 0.00 0.00 0.00 2.44
137 138 1.534729 GCCACCCGAGATGTTCTTTT 58.465 50.000 0.00 0.00 0.00 2.27
138 139 0.322546 GGCCACCCGAGATGTTCTTT 60.323 55.000 0.00 0.00 0.00 2.52
139 140 1.299976 GGCCACCCGAGATGTTCTT 59.700 57.895 0.00 0.00 0.00 2.52
140 141 1.488705 TTGGCCACCCGAGATGTTCT 61.489 55.000 3.88 0.00 0.00 3.01
141 142 1.002624 TTGGCCACCCGAGATGTTC 60.003 57.895 3.88 0.00 0.00 3.18
142 143 1.303317 GTTGGCCACCCGAGATGTT 60.303 57.895 3.88 0.00 0.00 2.71
143 144 0.907704 TAGTTGGCCACCCGAGATGT 60.908 55.000 3.88 0.00 0.00 3.06
144 145 0.469917 ATAGTTGGCCACCCGAGATG 59.530 55.000 3.88 0.00 0.00 2.90
145 146 2.097110 TATAGTTGGCCACCCGAGAT 57.903 50.000 3.88 0.00 0.00 2.75
146 147 1.968493 GATATAGTTGGCCACCCGAGA 59.032 52.381 3.88 0.00 0.00 4.04
147 148 1.691976 TGATATAGTTGGCCACCCGAG 59.308 52.381 3.88 0.00 0.00 4.63
148 149 1.796017 TGATATAGTTGGCCACCCGA 58.204 50.000 3.88 0.00 0.00 5.14
149 150 2.859165 ATGATATAGTTGGCCACCCG 57.141 50.000 3.88 0.00 0.00 5.28
150 151 5.431765 CTCATATGATATAGTTGGCCACCC 58.568 45.833 3.88 0.00 0.00 4.61
151 152 4.878397 GCTCATATGATATAGTTGGCCACC 59.122 45.833 3.88 0.00 0.00 4.61
152 153 4.568359 CGCTCATATGATATAGTTGGCCAC 59.432 45.833 3.88 0.00 0.00 5.01
153 154 4.466015 TCGCTCATATGATATAGTTGGCCA 59.534 41.667 0.00 0.00 0.00 5.36
154 155 5.011090 TCGCTCATATGATATAGTTGGCC 57.989 43.478 5.72 0.00 0.00 5.36
155 156 4.505922 GCTCGCTCATATGATATAGTTGGC 59.494 45.833 5.72 2.64 0.00 4.52
156 157 5.654497 TGCTCGCTCATATGATATAGTTGG 58.346 41.667 5.72 0.00 0.00 3.77
157 158 6.035435 GGTTGCTCGCTCATATGATATAGTTG 59.965 42.308 5.72 0.00 0.00 3.16
158 159 6.102663 GGTTGCTCGCTCATATGATATAGTT 58.897 40.000 5.72 0.00 0.00 2.24
159 160 5.394663 GGGTTGCTCGCTCATATGATATAGT 60.395 44.000 5.72 0.00 0.00 2.12
160 161 5.046529 GGGTTGCTCGCTCATATGATATAG 58.953 45.833 5.72 5.08 0.00 1.31
161 162 4.466015 TGGGTTGCTCGCTCATATGATATA 59.534 41.667 5.72 0.00 0.00 0.86
162 163 3.261643 TGGGTTGCTCGCTCATATGATAT 59.738 43.478 5.72 0.00 0.00 1.63
163 164 2.632512 TGGGTTGCTCGCTCATATGATA 59.367 45.455 5.72 0.00 0.00 2.15
164 165 1.417517 TGGGTTGCTCGCTCATATGAT 59.582 47.619 5.72 0.00 0.00 2.45
165 166 0.829990 TGGGTTGCTCGCTCATATGA 59.170 50.000 5.07 5.07 0.00 2.15
166 167 0.940126 GTGGGTTGCTCGCTCATATG 59.060 55.000 0.00 0.00 0.00 1.78
167 168 0.833287 AGTGGGTTGCTCGCTCATAT 59.167 50.000 0.00 0.00 0.00 1.78
168 169 0.175760 GAGTGGGTTGCTCGCTCATA 59.824 55.000 4.85 0.00 40.39 2.15
169 170 1.078848 GAGTGGGTTGCTCGCTCAT 60.079 57.895 4.85 0.00 40.39 2.90
170 171 2.343758 GAGTGGGTTGCTCGCTCA 59.656 61.111 4.85 0.00 40.39 4.26
171 172 1.739562 CTGAGTGGGTTGCTCGCTC 60.740 63.158 2.87 2.87 40.88 5.03
172 173 2.044806 AACTGAGTGGGTTGCTCGCT 62.045 55.000 0.00 0.00 35.85 4.93
173 174 1.569479 GAACTGAGTGGGTTGCTCGC 61.569 60.000 0.00 0.00 35.85 5.03
174 175 0.249868 TGAACTGAGTGGGTTGCTCG 60.250 55.000 0.00 0.00 35.85 5.03
175 176 1.967319 TTGAACTGAGTGGGTTGCTC 58.033 50.000 0.00 0.00 0.00 4.26
176 177 2.508526 GATTGAACTGAGTGGGTTGCT 58.491 47.619 0.00 0.00 0.00 3.91
177 178 1.541588 GGATTGAACTGAGTGGGTTGC 59.458 52.381 0.00 0.00 0.00 4.17
178 179 2.554032 GTGGATTGAACTGAGTGGGTTG 59.446 50.000 0.00 0.00 0.00 3.77
179 180 2.443255 AGTGGATTGAACTGAGTGGGTT 59.557 45.455 0.00 0.00 0.00 4.11
180 181 2.057922 AGTGGATTGAACTGAGTGGGT 58.942 47.619 0.00 0.00 0.00 4.51
181 182 2.867109 AGTGGATTGAACTGAGTGGG 57.133 50.000 0.00 0.00 0.00 4.61
182 183 5.128499 AGAGATAGTGGATTGAACTGAGTGG 59.872 44.000 0.00 0.00 0.00 4.00
183 184 6.096705 AGAGAGATAGTGGATTGAACTGAGTG 59.903 42.308 0.00 0.00 0.00 3.51
184 185 6.194235 AGAGAGATAGTGGATTGAACTGAGT 58.806 40.000 0.00 0.00 0.00 3.41
185 186 6.547141 AGAGAGAGATAGTGGATTGAACTGAG 59.453 42.308 0.00 0.00 0.00 3.35
186 187 6.430864 AGAGAGAGATAGTGGATTGAACTGA 58.569 40.000 0.00 0.00 0.00 3.41
187 188 6.547141 AGAGAGAGAGATAGTGGATTGAACTG 59.453 42.308 0.00 0.00 0.00 3.16
188 189 6.672593 AGAGAGAGAGATAGTGGATTGAACT 58.327 40.000 0.00 0.00 0.00 3.01
189 190 6.016276 GGAGAGAGAGAGATAGTGGATTGAAC 60.016 46.154 0.00 0.00 0.00 3.18
190 191 6.068010 GGAGAGAGAGAGATAGTGGATTGAA 58.932 44.000 0.00 0.00 0.00 2.69
191 192 5.457487 GGGAGAGAGAGAGATAGTGGATTGA 60.457 48.000 0.00 0.00 0.00 2.57
192 193 4.766891 GGGAGAGAGAGAGATAGTGGATTG 59.233 50.000 0.00 0.00 0.00 2.67
193 194 4.669768 AGGGAGAGAGAGAGATAGTGGATT 59.330 45.833 0.00 0.00 0.00 3.01
194 195 4.251169 AGGGAGAGAGAGAGATAGTGGAT 58.749 47.826 0.00 0.00 0.00 3.41
195 196 3.675613 AGGGAGAGAGAGAGATAGTGGA 58.324 50.000 0.00 0.00 0.00 4.02
196 197 4.104738 AGAAGGGAGAGAGAGAGATAGTGG 59.895 50.000 0.00 0.00 0.00 4.00
197 198 5.072329 AGAGAAGGGAGAGAGAGAGATAGTG 59.928 48.000 0.00 0.00 0.00 2.74
198 199 5.227593 AGAGAAGGGAGAGAGAGAGATAGT 58.772 45.833 0.00 0.00 0.00 2.12
199 200 5.545723 AGAGAGAAGGGAGAGAGAGAGATAG 59.454 48.000 0.00 0.00 0.00 2.08
200 201 5.476983 AGAGAGAAGGGAGAGAGAGAGATA 58.523 45.833 0.00 0.00 0.00 1.98
201 202 4.310740 AGAGAGAAGGGAGAGAGAGAGAT 58.689 47.826 0.00 0.00 0.00 2.75
202 203 3.736094 AGAGAGAAGGGAGAGAGAGAGA 58.264 50.000 0.00 0.00 0.00 3.10
203 204 5.832539 ATAGAGAGAAGGGAGAGAGAGAG 57.167 47.826 0.00 0.00 0.00 3.20
204 205 6.590656 AAATAGAGAGAAGGGAGAGAGAGA 57.409 41.667 0.00 0.00 0.00 3.10
205 206 6.040842 CCAAAATAGAGAGAAGGGAGAGAGAG 59.959 46.154 0.00 0.00 0.00 3.20
206 207 5.896678 CCAAAATAGAGAGAAGGGAGAGAGA 59.103 44.000 0.00 0.00 0.00 3.10
207 208 5.070313 CCCAAAATAGAGAGAAGGGAGAGAG 59.930 48.000 0.00 0.00 36.96 3.20
208 209 4.965532 CCCAAAATAGAGAGAAGGGAGAGA 59.034 45.833 0.00 0.00 36.96 3.10
209 210 4.102367 CCCCAAAATAGAGAGAAGGGAGAG 59.898 50.000 0.00 0.00 36.96 3.20
210 211 4.040755 CCCCAAAATAGAGAGAAGGGAGA 58.959 47.826 0.00 0.00 36.96 3.71
211 212 3.137360 CCCCCAAAATAGAGAGAAGGGAG 59.863 52.174 0.00 0.00 36.96 4.30
212 213 3.123273 CCCCCAAAATAGAGAGAAGGGA 58.877 50.000 0.00 0.00 36.96 4.20
213 214 3.123273 TCCCCCAAAATAGAGAGAAGGG 58.877 50.000 0.00 0.00 34.58 3.95
214 215 5.369699 TGTATCCCCCAAAATAGAGAGAAGG 59.630 44.000 0.00 0.00 0.00 3.46
215 216 6.500589 TGTATCCCCCAAAATAGAGAGAAG 57.499 41.667 0.00 0.00 0.00 2.85
216 217 6.901615 TTGTATCCCCCAAAATAGAGAGAA 57.098 37.500 0.00 0.00 0.00 2.87
217 218 6.183361 CCATTGTATCCCCCAAAATAGAGAGA 60.183 42.308 0.00 0.00 0.00 3.10
218 219 6.006449 CCATTGTATCCCCCAAAATAGAGAG 58.994 44.000 0.00 0.00 0.00 3.20
219 220 5.674496 TCCATTGTATCCCCCAAAATAGAGA 59.326 40.000 0.00 0.00 0.00 3.10
220 221 5.770162 GTCCATTGTATCCCCCAAAATAGAG 59.230 44.000 0.00 0.00 0.00 2.43
221 222 5.435041 AGTCCATTGTATCCCCCAAAATAGA 59.565 40.000 0.00 0.00 0.00 1.98
222 223 5.705400 AGTCCATTGTATCCCCCAAAATAG 58.295 41.667 0.00 0.00 0.00 1.73
223 224 5.399727 GGAGTCCATTGTATCCCCCAAAATA 60.400 44.000 3.60 0.00 0.00 1.40
224 225 4.546674 GAGTCCATTGTATCCCCCAAAAT 58.453 43.478 0.00 0.00 0.00 1.82
225 226 3.309556 GGAGTCCATTGTATCCCCCAAAA 60.310 47.826 3.60 0.00 0.00 2.44
226 227 2.243736 GGAGTCCATTGTATCCCCCAAA 59.756 50.000 3.60 0.00 0.00 3.28
227 228 1.850345 GGAGTCCATTGTATCCCCCAA 59.150 52.381 3.60 0.00 0.00 4.12
228 229 1.010793 AGGAGTCCATTGTATCCCCCA 59.989 52.381 12.86 0.00 31.86 4.96
229 230 1.700186 GAGGAGTCCATTGTATCCCCC 59.300 57.143 12.86 0.00 31.86 5.40
230 231 1.700186 GGAGGAGTCCATTGTATCCCC 59.300 57.143 12.86 0.00 43.31 4.81
242 243 3.134081 TCATTAACGGGAATGGAGGAGTC 59.866 47.826 10.55 0.00 37.41 3.36
275 276 4.322349 GCTCTATCGGGAGAAGCAATGTAT 60.322 45.833 5.44 0.00 45.37 2.29
283 300 3.564644 TCTTAACGCTCTATCGGGAGAAG 59.435 47.826 5.44 1.57 45.37 2.85
288 305 3.777478 TGTTTCTTAACGCTCTATCGGG 58.223 45.455 0.00 0.00 37.06 5.14
289 306 6.916387 TCTTATGTTTCTTAACGCTCTATCGG 59.084 38.462 0.00 0.00 37.06 4.18
295 312 7.478978 GCTCTTTTCTTATGTTTCTTAACGCTC 59.521 37.037 0.00 0.00 37.06 5.03
298 315 7.534239 GGTGCTCTTTTCTTATGTTTCTTAACG 59.466 37.037 0.00 0.00 37.06 3.18
300 317 7.442969 TCGGTGCTCTTTTCTTATGTTTCTTAA 59.557 33.333 0.00 0.00 0.00 1.85
301 318 6.932400 TCGGTGCTCTTTTCTTATGTTTCTTA 59.068 34.615 0.00 0.00 0.00 2.10
307 324 4.385825 TGTTCGGTGCTCTTTTCTTATGT 58.614 39.130 0.00 0.00 0.00 2.29
308 325 5.147162 GTTGTTCGGTGCTCTTTTCTTATG 58.853 41.667 0.00 0.00 0.00 1.90
309 326 4.215613 GGTTGTTCGGTGCTCTTTTCTTAT 59.784 41.667 0.00 0.00 0.00 1.73
310 327 3.562557 GGTTGTTCGGTGCTCTTTTCTTA 59.437 43.478 0.00 0.00 0.00 2.10
313 330 1.673920 TGGTTGTTCGGTGCTCTTTTC 59.326 47.619 0.00 0.00 0.00 2.29
338 355 2.095567 GCTGACATGTGTGGTTCATGAC 60.096 50.000 1.15 7.06 43.47 3.06
339 356 2.153645 GCTGACATGTGTGGTTCATGA 58.846 47.619 1.15 0.00 43.47 3.07
340 357 1.881324 TGCTGACATGTGTGGTTCATG 59.119 47.619 1.15 4.66 45.41 3.07
341 358 1.881973 GTGCTGACATGTGTGGTTCAT 59.118 47.619 1.15 0.00 0.00 2.57
342 359 1.308047 GTGCTGACATGTGTGGTTCA 58.692 50.000 1.15 0.00 0.00 3.18
343 360 0.235665 CGTGCTGACATGTGTGGTTC 59.764 55.000 1.15 0.00 0.00 3.62
344 361 0.463654 ACGTGCTGACATGTGTGGTT 60.464 50.000 1.15 0.00 44.46 3.67
345 362 0.463654 AACGTGCTGACATGTGTGGT 60.464 50.000 1.15 0.00 45.43 4.16
353 370 0.179121 AACGACTCAACGTGCTGACA 60.179 50.000 0.00 0.00 45.83 3.58
391 408 2.069273 GTGGACTCCAACATGTCGAAG 58.931 52.381 0.00 0.00 34.18 3.79
407 435 0.687920 TAATCTTGCGTGTGGGTGGA 59.312 50.000 0.00 0.00 0.00 4.02
421 449 2.166664 GCGACAAGGAGGTCTGTAATCT 59.833 50.000 0.00 0.00 35.63 2.40
425 453 1.557099 ATGCGACAAGGAGGTCTGTA 58.443 50.000 0.00 0.00 35.63 2.74
426 454 0.687354 AATGCGACAAGGAGGTCTGT 59.313 50.000 0.00 0.00 35.63 3.41
453 481 0.038618 GCGGAAAAGGCGGTTGAAAT 60.039 50.000 0.00 0.00 0.00 2.17
454 482 1.360911 GCGGAAAAGGCGGTTGAAA 59.639 52.632 0.00 0.00 0.00 2.69
462 490 0.594602 AAAAGTACCGCGGAAAAGGC 59.405 50.000 35.90 14.15 0.00 4.35
463 491 1.136169 CGAAAAGTACCGCGGAAAAGG 60.136 52.381 35.90 3.66 0.00 3.11
482 510 1.007387 GCTGAAACCAAAGGCCACG 60.007 57.895 5.01 0.00 0.00 4.94
501 529 6.699575 AAATTAGTATCTGCCAAGCGATTT 57.300 33.333 0.00 0.00 0.00 2.17
545 573 5.758790 AAACTTCCTCCTTAGTCCTTACC 57.241 43.478 0.00 0.00 0.00 2.85
547 575 8.985922 GGTTATAAACTTCCTCCTTAGTCCTTA 58.014 37.037 0.00 0.00 0.00 2.69
548 576 7.460082 TGGTTATAAACTTCCTCCTTAGTCCTT 59.540 37.037 1.50 0.00 0.00 3.36
552 580 7.628101 AGGATGGTTATAAACTTCCTCCTTAGT 59.372 37.037 25.26 8.22 38.65 2.24
559 587 7.119387 CCAGAAAGGATGGTTATAAACTTCCT 58.881 38.462 25.26 25.26 42.08 3.36
583 1042 8.136165 ACAGAAGTCATCACGAATAGTAATACC 58.864 37.037 0.00 0.00 0.00 2.73
594 1053 3.824443 TGGACTAACAGAAGTCATCACGA 59.176 43.478 6.37 0.00 46.40 4.35
595 1054 4.174411 TGGACTAACAGAAGTCATCACG 57.826 45.455 6.37 0.00 46.40 4.35
606 1065 5.823045 GGAGGGTGAATTTATGGACTAACAG 59.177 44.000 0.00 0.00 0.00 3.16
608 1067 6.002653 AGGAGGGTGAATTTATGGACTAAC 57.997 41.667 0.00 0.00 0.00 2.34
624 1083 2.285743 GGAGGCCTGAAGGAGGGT 60.286 66.667 12.00 0.00 43.07 4.34
721 1222 6.038161 TGTTGGTGTCATTTCAAAGTCACTAG 59.962 38.462 0.00 0.00 0.00 2.57
739 1240 8.830201 TGGATAAAGATTTGATTTTGTTGGTG 57.170 30.769 0.00 0.00 0.00 4.17
772 1273 2.213499 CGGATAAGCTTCGAAAGGCAT 58.787 47.619 0.00 2.67 0.00 4.40
774 1275 0.305009 GCGGATAAGCTTCGAAAGGC 59.695 55.000 0.00 0.00 0.00 4.35
776 1277 1.861575 GAGGCGGATAAGCTTCGAAAG 59.138 52.381 0.00 0.00 33.68 2.62
868 1370 1.750778 GGTGATGATGATTTTGGCCGT 59.249 47.619 0.00 0.00 0.00 5.68
869 1371 1.067516 GGGTGATGATGATTTTGGCCG 59.932 52.381 0.00 0.00 0.00 6.13
870 1372 2.109774 TGGGTGATGATGATTTTGGCC 58.890 47.619 0.00 0.00 0.00 5.36
871 1373 4.411256 AATGGGTGATGATGATTTTGGC 57.589 40.909 0.00 0.00 0.00 4.52
901 1404 0.107703 TGGATGCCACCGTTGAGATC 60.108 55.000 0.00 0.00 0.00 2.75
902 1405 0.327924 TTGGATGCCACCGTTGAGAT 59.672 50.000 0.00 0.00 30.78 2.75
921 1424 3.080765 TGTCCGCGGATGGATGGT 61.081 61.111 33.58 0.00 40.91 3.55
923 1426 2.969238 GCTGTCCGCGGATGGATG 60.969 66.667 33.58 19.40 40.91 3.51
924 1427 3.469970 TGCTGTCCGCGGATGGAT 61.470 61.111 33.58 0.00 40.91 3.41
1319 1843 2.040359 GGGGAGGAAGGGAGGGAG 60.040 72.222 0.00 0.00 0.00 4.30
1320 1844 3.707189 GGGGGAGGAAGGGAGGGA 61.707 72.222 0.00 0.00 0.00 4.20
1334 1858 2.764547 GGAGGAGAGGTTCGGGGG 60.765 72.222 0.00 0.00 0.00 5.40
1335 1859 2.038975 TGGAGGAGAGGTTCGGGG 59.961 66.667 0.00 0.00 0.00 5.73
1336 1860 1.305381 AGTGGAGGAGAGGTTCGGG 60.305 63.158 0.00 0.00 0.00 5.14
1337 1861 1.324005 GGAGTGGAGGAGAGGTTCGG 61.324 65.000 0.00 0.00 0.00 4.30
1338 1862 0.612174 TGGAGTGGAGGAGAGGTTCG 60.612 60.000 0.00 0.00 0.00 3.95
1339 1863 1.484240 CATGGAGTGGAGGAGAGGTTC 59.516 57.143 0.00 0.00 0.00 3.62
1343 1867 1.828768 GGCATGGAGTGGAGGAGAG 59.171 63.158 0.00 0.00 0.00 3.20
1384 1909 7.707624 TTTAAAGATGGATTCAGTTGAGCAT 57.292 32.000 0.00 0.00 0.00 3.79
1387 1912 8.340618 TCCTTTTAAAGATGGATTCAGTTGAG 57.659 34.615 6.24 0.00 0.00 3.02
1392 1917 7.344095 AGCATCCTTTTAAAGATGGATTCAG 57.656 36.000 15.44 8.12 37.22 3.02
1411 1936 2.481952 GCTGTGGGATAATCGAAGCATC 59.518 50.000 0.00 0.00 0.00 3.91
1428 1953 3.933332 GTCGTCCTAAATTAGCAAGCTGT 59.067 43.478 4.53 0.00 0.00 4.40
1429 1954 3.932710 TGTCGTCCTAAATTAGCAAGCTG 59.067 43.478 4.53 0.00 0.00 4.24
1487 2014 3.124466 TGAAAAGTGAACATACATCGCCG 59.876 43.478 0.00 0.00 0.00 6.46
1491 2018 9.941664 CAGGATATTGAAAAGTGAACATACATC 57.058 33.333 0.00 0.00 0.00 3.06
1492 2019 9.685276 TCAGGATATTGAAAAGTGAACATACAT 57.315 29.630 0.00 0.00 0.00 2.29
1551 2091 0.949105 GTCTCCGCTTTTCTTCGCCA 60.949 55.000 0.00 0.00 0.00 5.69
1552 2092 1.636570 GGTCTCCGCTTTTCTTCGCC 61.637 60.000 0.00 0.00 0.00 5.54
1701 2249 2.685366 CTCCACCATGGCCCATGT 59.315 61.111 21.88 7.87 39.94 3.21
1702 2250 2.123597 CCTCCACCATGGCCCATG 60.124 66.667 17.16 17.16 41.10 3.66
1778 2332 3.078836 TTCCCTTCCTACGGGCCG 61.079 66.667 27.06 27.06 41.69 6.13
1814 2368 4.755123 AGTGGTAACTTGTCGAAATGAAGG 59.245 41.667 0.00 0.00 30.14 3.46
1863 2417 3.181480 ACAAAGGACAAAAATCCACACGG 60.181 43.478 0.00 0.00 41.73 4.94
1943 2504 6.311690 GCAAGAGTACTTATCAGGAAGACAAC 59.688 42.308 0.00 0.00 34.70 3.32
2007 2568 3.008049 TCTTTTAGGAGTCCCAGTTCTGC 59.992 47.826 5.25 0.00 33.88 4.26
2009 2570 5.132144 TGTTTCTTTTAGGAGTCCCAGTTCT 59.868 40.000 5.25 0.00 33.88 3.01
2035 2596 3.018856 CTGCCAGCAACTTATGATCCAA 58.981 45.455 0.00 0.00 0.00 3.53
2036 2597 2.646930 CTGCCAGCAACTTATGATCCA 58.353 47.619 0.00 0.00 0.00 3.41
2093 2656 1.675641 GGGACGCCTTTGATGCTGT 60.676 57.895 0.00 0.00 0.00 4.40
2146 2709 0.179073 CATAGGCAACCTCGACCTGG 60.179 60.000 1.91 0.00 34.61 4.45
2401 2964 6.226787 GCTAGTGTATGCTGATGGTAAAGAT 58.773 40.000 0.00 0.00 0.00 2.40
2416 2979 1.417890 GGCACATCAGGGCTAGTGTAT 59.582 52.381 0.00 0.00 34.59 2.29
2458 3021 2.825086 AATACAATGAAGCGCCGAAC 57.175 45.000 2.29 0.00 0.00 3.95
2464 3027 5.295431 TGGACAGAAAATACAATGAAGCG 57.705 39.130 0.00 0.00 0.00 4.68
2538 3101 8.463930 AGGAGCATCAGAGTAGATATTATAGC 57.536 38.462 0.00 0.00 36.25 2.97
2539 3102 9.851686 AGAGGAGCATCAGAGTAGATATTATAG 57.148 37.037 0.00 0.00 36.25 1.31
2591 3156 7.103641 ACAGAGAGTGTTGAACAGAAACTAAA 58.896 34.615 0.00 0.00 34.94 1.85
2626 3191 5.923204 AGTGTTTCCATGTTTTTAATGCCA 58.077 33.333 0.00 0.00 0.00 4.92
2627 3192 7.151976 AGTAGTGTTTCCATGTTTTTAATGCC 58.848 34.615 0.00 0.00 0.00 4.40
2782 3358 6.952773 AGGTTGTATTGTAGCTTCAAAACA 57.047 33.333 9.99 0.00 0.00 2.83
2792 3368 7.872993 CCACTGGTGATATAGGTTGTATTGTAG 59.127 40.741 1.93 0.00 0.00 2.74
2822 3398 1.302033 AGGTGAGCAGAACAAGCCG 60.302 57.895 0.00 0.00 0.00 5.52
2827 3428 2.528818 CCCCCAGGTGAGCAGAACA 61.529 63.158 0.00 0.00 0.00 3.18
2988 3589 6.913170 TCCATGCTTCTAATGTTGTTCTTTC 58.087 36.000 0.00 0.00 0.00 2.62
3045 3646 8.889717 GCATACAAGTACCTCTTATTTGCTTTA 58.110 33.333 0.00 0.00 31.96 1.85
3081 3686 2.085343 AATTGGCACTGGAGCAGGGT 62.085 55.000 0.00 0.00 37.20 4.34
3144 3749 5.756195 TTAGCCAATATGAGTTCATGCAC 57.244 39.130 4.90 0.00 37.15 4.57
3158 3763 1.552254 CCAACCACCCCTTTAGCCAAT 60.552 52.381 0.00 0.00 0.00 3.16
3308 3913 6.427242 GGGAAACTGTTGACCTAGTCTAAAAG 59.573 42.308 13.82 0.00 33.15 2.27
3324 3930 3.642848 ACAATGCAATCTTGGGAAACTGT 59.357 39.130 3.73 0.00 0.00 3.55
3340 3946 2.845764 GCGCACTATACGACAACAATGC 60.846 50.000 0.30 0.00 0.00 3.56
3384 3990 7.642082 TCACCTAAAGACTGTAAGATAGTCC 57.358 40.000 0.00 0.00 44.35 3.85
3429 4041 0.512952 CTTTCAGCACTGCACGGTAC 59.487 55.000 3.30 0.00 0.00 3.34
3452 4064 4.386867 TGTATCCCTTAGAAGTTCGCAG 57.613 45.455 0.00 0.00 0.00 5.18
3455 4067 6.338146 TCACAATGTATCCCTTAGAAGTTCG 58.662 40.000 0.00 0.00 0.00 3.95
3463 4075 6.321181 GGATTTGCTTCACAATGTATCCCTTA 59.679 38.462 0.00 0.00 37.27 2.69
3514 4134 0.107643 TGCACAGGGACACAATTCGA 59.892 50.000 0.00 0.00 0.00 3.71
3516 4136 1.317613 TGTGCACAGGGACACAATTC 58.682 50.000 17.42 0.00 43.48 2.17
3593 4213 4.150897 AGCAACTTTGTAGACAGGACAA 57.849 40.909 0.00 0.00 35.03 3.18
3630 4251 2.679092 CCAGCCAGCCAGATCCAA 59.321 61.111 0.00 0.00 0.00 3.53
3688 4309 6.701841 AGACTACAAAATATAGTCCATGTGCG 59.298 38.462 8.24 0.00 46.59 5.34
3727 4348 5.679638 GCATTTGTCTCTTTGAACCAAGTGT 60.680 40.000 0.00 0.00 0.00 3.55
3728 4349 4.741676 GCATTTGTCTCTTTGAACCAAGTG 59.258 41.667 0.00 0.00 0.00 3.16
3730 4351 5.192327 AGCATTTGTCTCTTTGAACCAAG 57.808 39.130 0.00 0.00 0.00 3.61
3771 4392 4.627058 TGTATCTCTTTGAAGTTCGCACA 58.373 39.130 0.00 0.00 0.00 4.57
3772 4393 5.786401 ATGTATCTCTTTGAAGTTCGCAC 57.214 39.130 0.00 0.00 0.00 5.34
3773 4394 5.700832 ACAATGTATCTCTTTGAAGTTCGCA 59.299 36.000 0.00 0.00 35.84 5.10
3774 4395 6.128553 TGACAATGTATCTCTTTGAAGTTCGC 60.129 38.462 0.00 0.00 35.84 4.70
3775 4396 7.351414 TGACAATGTATCTCTTTGAAGTTCG 57.649 36.000 0.00 0.00 35.84 3.95
3776 4397 9.766277 GATTGACAATGTATCTCTTTGAAGTTC 57.234 33.333 5.14 0.00 35.84 3.01
3777 4398 9.288576 TGATTGACAATGTATCTCTTTGAAGTT 57.711 29.630 5.14 0.00 35.84 2.66
3778 4399 8.853077 TGATTGACAATGTATCTCTTTGAAGT 57.147 30.769 5.14 0.00 35.84 3.01
3785 4406 8.404000 GCTGAATTTGATTGACAATGTATCTCT 58.596 33.333 5.14 0.00 38.36 3.10
3786 4407 8.404000 AGCTGAATTTGATTGACAATGTATCTC 58.596 33.333 5.14 0.00 38.36 2.75
3787 4408 8.289939 AGCTGAATTTGATTGACAATGTATCT 57.710 30.769 5.14 0.00 38.36 1.98
3870 4752 4.142271 TGAAGGAACAAATCGCTGTTTTGT 60.142 37.500 10.10 10.10 46.38 2.83
3914 4797 3.460857 AGGATTGTGGATCTCTAACGC 57.539 47.619 0.00 0.00 35.02 4.84
3962 4845 3.753294 ATCCCATAATCACACGAGACC 57.247 47.619 0.00 0.00 0.00 3.85
3997 4880 4.460034 TGTTGCATGAGACATACAAGCATT 59.540 37.500 0.00 0.00 40.59 3.56
4201 5089 5.709631 TGAATAACTGAATTTGCCTGCAGTA 59.290 36.000 13.81 0.00 40.43 2.74
4208 5096 5.064441 ACAGCTGAATAACTGAATTTGCC 57.936 39.130 23.35 0.00 37.35 4.52
4242 5130 2.519377 TGTACAGGACACAGTTTCGG 57.481 50.000 0.00 0.00 31.20 4.30
4286 5174 5.680619 AGTAACAGATCACTGGTTTGACAA 58.319 37.500 0.00 0.00 41.81 3.18
4294 5182 5.398603 ACTCTCAAGTAACAGATCACTGG 57.601 43.478 0.00 0.00 40.14 4.00
4302 5190 8.270080 TCAGATGTACTACTCTCAAGTAACAG 57.730 38.462 0.00 0.00 37.53 3.16
4352 5240 3.814005 ACCCTACAACCGTGTATGATC 57.186 47.619 0.00 0.00 39.51 2.92
4392 5280 7.070322 AGCTCCATATGGCAAGTCAAATTAAAT 59.930 33.333 17.58 0.00 34.44 1.40
4394 5282 5.893255 AGCTCCATATGGCAAGTCAAATTAA 59.107 36.000 17.58 0.00 34.44 1.40
4395 5283 5.448654 AGCTCCATATGGCAAGTCAAATTA 58.551 37.500 17.58 0.00 34.44 1.40
4396 5284 4.284178 AGCTCCATATGGCAAGTCAAATT 58.716 39.130 17.58 0.00 34.44 1.82
4398 5286 3.370840 AGCTCCATATGGCAAGTCAAA 57.629 42.857 17.58 0.00 34.44 2.69
4399 5287 4.712051 ATAGCTCCATATGGCAAGTCAA 57.288 40.909 17.58 0.00 34.44 3.18
4400 5288 4.712051 AATAGCTCCATATGGCAAGTCA 57.288 40.909 17.58 3.18 34.44 3.41
4402 5290 7.465116 AGATAAAATAGCTCCATATGGCAAGT 58.535 34.615 17.58 4.09 34.44 3.16
4403 5291 7.828223 AGAGATAAAATAGCTCCATATGGCAAG 59.172 37.037 17.58 11.28 41.96 4.01
4405 5293 7.262990 AGAGATAAAATAGCTCCATATGGCA 57.737 36.000 17.58 5.37 41.96 4.92
4406 5294 8.572855 AAAGAGATAAAATAGCTCCATATGGC 57.427 34.615 17.58 6.36 41.96 4.40
4481 5407 2.232208 CAGCCAGATAGATCCATACGCA 59.768 50.000 0.00 0.00 0.00 5.24
4482 5408 2.493675 TCAGCCAGATAGATCCATACGC 59.506 50.000 0.00 0.00 0.00 4.42
4584 5510 3.875727 GAGCAGCAGTGATCAATGTACAT 59.124 43.478 22.89 1.41 39.05 2.29
4590 5516 2.747989 CACAAGAGCAGCAGTGATCAAT 59.252 45.455 0.00 0.00 41.89 2.57
5020 5960 3.622459 CGACAAATGAAATCGGGGC 57.378 52.632 0.00 0.00 32.22 5.80
5042 5982 1.142060 TCCAAACAAGGGCGAAGAAGA 59.858 47.619 0.00 0.00 0.00 2.87
5043 5983 1.604604 TCCAAACAAGGGCGAAGAAG 58.395 50.000 0.00 0.00 0.00 2.85
5150 6095 2.046892 GGCCGTGTGCATCTCAGT 60.047 61.111 0.00 0.00 43.89 3.41
5172 6117 5.068987 TGATTTTCTTGGAACTTGGACTTGG 59.931 40.000 0.00 0.00 0.00 3.61
5185 6130 4.959723 TCCTGCCTTTTTGATTTTCTTGG 58.040 39.130 0.00 0.00 0.00 3.61
5189 6134 7.154656 ACTTGTATCCTGCCTTTTTGATTTTC 58.845 34.615 0.00 0.00 0.00 2.29
5198 6144 6.319658 CACATGATTACTTGTATCCTGCCTTT 59.680 38.462 0.00 0.00 33.96 3.11
5204 6150 8.083828 AGTCTTCACATGATTACTTGTATCCT 57.916 34.615 0.00 0.00 33.96 3.24
5214 6160 9.890629 GGGCATTATATAGTCTTCACATGATTA 57.109 33.333 0.00 0.00 0.00 1.75
5230 6176 4.835615 ACTTCAGAGTCTCGGGCATTATAT 59.164 41.667 0.00 0.00 0.00 0.86
5236 6182 1.048601 AAACTTCAGAGTCTCGGGCA 58.951 50.000 0.00 0.00 34.21 5.36
5241 6187 7.592164 GTGAGTAAGTACAAACTTCAGAGTCTC 59.408 40.741 0.00 0.00 42.42 3.36
5290 6236 1.648116 ATGCAAGGCCCAGTTTTCAT 58.352 45.000 0.00 0.00 0.00 2.57
5299 6245 0.390735 CAAAGCTCAATGCAAGGCCC 60.391 55.000 0.00 0.00 45.94 5.80
5309 6255 0.038618 CAGCTGCATGCAAAGCTCAA 60.039 50.000 26.50 0.78 46.82 3.02
5384 6627 0.577269 GCCTGAAATTCGACGATCGG 59.423 55.000 20.98 2.12 40.88 4.18
5459 6702 1.668419 ACGCAACAGAGCAAGTTCTT 58.332 45.000 0.00 0.00 0.00 2.52
5471 6714 4.123506 TCACAGATAGAAACAACGCAACA 58.876 39.130 0.00 0.00 0.00 3.33
5472 6715 4.725556 TCACAGATAGAAACAACGCAAC 57.274 40.909 0.00 0.00 0.00 4.17
5484 6727 3.181526 GCAGCTTGTCGTTTCACAGATAG 60.182 47.826 0.00 0.00 0.00 2.08
5510 6753 5.054477 GTGGCGGTAGATTAAATTAGCTGA 58.946 41.667 0.00 0.00 0.00 4.26
5522 6845 2.154567 TTACTGGAGTGGCGGTAGAT 57.845 50.000 0.00 0.00 0.00 1.98
5544 6867 1.288633 TCATGGTCATGGGGCTTTGAT 59.711 47.619 10.61 0.00 39.24 2.57
5564 6887 0.786435 AAGGGCCCAATTGTTCCTCT 59.214 50.000 27.56 0.00 0.00 3.69
5565 6888 1.276138 CAAAGGGCCCAATTGTTCCTC 59.724 52.381 27.56 0.00 0.00 3.71
5568 6891 2.936553 GCATCAAAGGGCCCAATTGTTC 60.937 50.000 29.24 19.32 0.00 3.18
5569 6892 1.003464 GCATCAAAGGGCCCAATTGTT 59.997 47.619 29.24 22.28 0.00 2.83
5593 6916 1.408683 GCTTGGATCACACCCATAGCA 60.409 52.381 0.00 0.00 37.55 3.49
5617 6940 5.395768 CCAACAGGAATTAGGTCTGGACTAG 60.396 48.000 0.67 0.00 33.19 2.57
5623 6946 5.102953 TCATCCAACAGGAATTAGGTCTG 57.897 43.478 0.00 0.00 34.49 3.51
5634 6957 0.692476 TGGGACACTCATCCAACAGG 59.308 55.000 0.00 0.00 40.96 4.00
5787 7110 0.620556 ATCGGATGAACTTGGCCTGT 59.379 50.000 3.32 0.00 0.00 4.00
5791 7114 5.499139 TTATGAAATCGGATGAACTTGGC 57.501 39.130 0.00 0.00 0.00 4.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.