Multiple sequence alignment - TraesCS4D01G330900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G330900 chr4D 100.000 3001 0 0 1 3001 488848149 488851149 0.000000e+00 5542
1 TraesCS4D01G330900 chr4D 93.211 1694 55 15 1352 3001 108843144 108844821 0.000000e+00 2436
2 TraesCS4D01G330900 chr4D 86.710 459 24 16 1 435 489091634 489092079 2.710000e-130 475
3 TraesCS4D01G330900 chr4D 85.093 322 18 12 444 735 488872707 488872386 4.860000e-78 302
4 TraesCS4D01G330900 chr4D 83.934 305 19 9 444 719 176789610 176789307 6.380000e-67 265
5 TraesCS4D01G330900 chr4D 85.366 246 24 4 1 234 489125865 489126110 8.310000e-61 244
6 TraesCS4D01G330900 chr4D 93.277 119 5 2 1 118 488808009 488808125 3.980000e-39 172
7 TraesCS4D01G330900 chr4D 83.117 154 16 5 116 267 488834488 488834633 6.750000e-27 132
8 TraesCS4D01G330900 chr7D 94.220 2422 80 16 630 3001 525733953 525736364 0.000000e+00 3642
9 TraesCS4D01G330900 chr1D 93.778 2427 92 15 633 3001 42897037 42894612 0.000000e+00 3591
10 TraesCS4D01G330900 chr1D 92.849 1706 54 18 1352 3001 7181412 7183105 0.000000e+00 2412
11 TraesCS4D01G330900 chr5A 92.760 2431 99 21 630 3001 634624384 634626796 0.000000e+00 3443
12 TraesCS4D01G330900 chr5A 92.105 2432 103 29 630 3001 573012000 573009598 0.000000e+00 3345
13 TraesCS4D01G330900 chr5A 91.341 820 24 9 2229 3001 552242117 552241298 0.000000e+00 1077
14 TraesCS4D01G330900 chr5A 83.540 322 24 13 443 735 552236071 552236392 1.060000e-69 274
15 TraesCS4D01G330900 chr5A 90.909 143 11 1 10 152 670551600 670551740 1.100000e-44 191
16 TraesCS4D01G330900 chr5A 89.542 153 13 2 1 152 670585277 670585427 1.100000e-44 191
17 TraesCS4D01G330900 chr5A 80.645 217 25 9 216 424 670573191 670573398 5.180000e-33 152
18 TraesCS4D01G330900 chr5A 81.000 200 17 9 188 369 670551746 670551942 4.030000e-29 139
19 TraesCS4D01G330900 chr3B 90.954 2454 130 32 630 3001 726424567 726427010 0.000000e+00 3217
20 TraesCS4D01G330900 chr3B 92.643 1536 80 14 630 2138 13529391 13530920 0.000000e+00 2180
21 TraesCS4D01G330900 chr3B 92.500 120 8 1 630 749 521406222 521406340 1.430000e-38 171
22 TraesCS4D01G330900 chr2A 92.155 2116 88 25 632 2705 38507115 38505036 0.000000e+00 2916
23 TraesCS4D01G330900 chr2A 90.657 1659 87 36 1392 3001 704019426 704017787 0.000000e+00 2143
24 TraesCS4D01G330900 chr2A 93.713 684 28 9 2333 3001 773325607 773324924 0.000000e+00 1011
25 TraesCS4D01G330900 chr2A 83.540 322 23 10 443 735 773311614 773311934 1.060000e-69 274
26 TraesCS4D01G330900 chr2A 92.500 120 8 1 630 749 704012857 704012975 1.430000e-38 171
27 TraesCS4D01G330900 chr5D 93.590 1919 74 16 444 2323 388593173 388595081 0.000000e+00 2817
28 TraesCS4D01G330900 chr5D 92.353 1700 68 23 1352 3001 449488721 449490408 0.000000e+00 2362
29 TraesCS4D01G330900 chr5D 91.099 191 17 0 444 634 449487576 449487766 2.970000e-65 259
30 TraesCS4D01G330900 chr2B 95.579 1606 63 7 630 2230 80552445 80550843 0.000000e+00 2566
31 TraesCS4D01G330900 chr1A 93.728 1706 76 16 630 2323 572001181 571999495 0.000000e+00 2529
32 TraesCS4D01G330900 chr1A 94.591 684 21 8 2333 3001 571999441 571998759 0.000000e+00 1044
33 TraesCS4D01G330900 chr7A 93.575 1712 74 11 630 2320 689936618 689938314 0.000000e+00 2519
34 TraesCS4D01G330900 chr7A 94.905 687 20 2 2327 2998 689938377 689939063 0.000000e+00 1061
35 TraesCS4D01G330900 chr5B 93.075 1704 69 21 630 2323 418362268 418360604 0.000000e+00 2447
36 TraesCS4D01G330900 chr5B 84.000 350 26 12 444 764 418362483 418362135 2.910000e-80 309
37 TraesCS4D01G330900 chr5B 83.912 317 24 11 444 733 418340318 418340634 8.190000e-71 278
38 TraesCS4D01G330900 chr2D 93.059 1700 53 24 1352 3001 380679029 380680713 0.000000e+00 2425
39 TraesCS4D01G330900 chr3D 93.000 1700 55 24 1352 3001 590154237 590155922 0.000000e+00 2422
40 TraesCS4D01G330900 chr3D 83.851 322 21 14 444 735 594947122 594947442 8.190000e-71 278
41 TraesCS4D01G330900 chr1B 95.495 1332 56 1 630 1961 548830719 548829392 0.000000e+00 2124
42 TraesCS4D01G330900 chr1B 92.140 1056 47 15 1981 3001 548829404 548828350 0.000000e+00 1458
43 TraesCS4D01G330900 chr6A 94.323 687 23 7 2327 2998 116691983 116692668 0.000000e+00 1038
44 TraesCS4D01G330900 chr4B 82.692 468 35 21 1 435 627057740 627058194 1.020000e-99 374
45 TraesCS4D01G330900 chr4B 88.929 280 23 4 1 278 626457229 626457502 3.710000e-89 339
46 TraesCS4D01G330900 chr4B 83.047 407 20 21 2 392 626635543 626635916 1.040000e-84 324
47 TraesCS4D01G330900 chr4B 88.085 235 22 4 1 234 627156194 627156423 1.060000e-69 274
48 TraesCS4D01G330900 chr4B 80.693 404 28 27 22 422 626882722 626883078 4.930000e-68 268
49 TraesCS4D01G330900 chr4B 84.274 248 23 7 1 234 627046879 627047124 8.370000e-56 228


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G330900 chr4D 488848149 488851149 3000 False 5542.0 5542 100.0000 1 3001 1 chr4D.!!$F4 3000
1 TraesCS4D01G330900 chr4D 108843144 108844821 1677 False 2436.0 2436 93.2110 1352 3001 1 chr4D.!!$F1 1649
2 TraesCS4D01G330900 chr7D 525733953 525736364 2411 False 3642.0 3642 94.2200 630 3001 1 chr7D.!!$F1 2371
3 TraesCS4D01G330900 chr1D 42894612 42897037 2425 True 3591.0 3591 93.7780 633 3001 1 chr1D.!!$R1 2368
4 TraesCS4D01G330900 chr1D 7181412 7183105 1693 False 2412.0 2412 92.8490 1352 3001 1 chr1D.!!$F1 1649
5 TraesCS4D01G330900 chr5A 634624384 634626796 2412 False 3443.0 3443 92.7600 630 3001 1 chr5A.!!$F2 2371
6 TraesCS4D01G330900 chr5A 573009598 573012000 2402 True 3345.0 3345 92.1050 630 3001 1 chr5A.!!$R2 2371
7 TraesCS4D01G330900 chr5A 552241298 552242117 819 True 1077.0 1077 91.3410 2229 3001 1 chr5A.!!$R1 772
8 TraesCS4D01G330900 chr3B 726424567 726427010 2443 False 3217.0 3217 90.9540 630 3001 1 chr3B.!!$F3 2371
9 TraesCS4D01G330900 chr3B 13529391 13530920 1529 False 2180.0 2180 92.6430 630 2138 1 chr3B.!!$F1 1508
10 TraesCS4D01G330900 chr2A 38505036 38507115 2079 True 2916.0 2916 92.1550 632 2705 1 chr2A.!!$R1 2073
11 TraesCS4D01G330900 chr2A 704017787 704019426 1639 True 2143.0 2143 90.6570 1392 3001 1 chr2A.!!$R2 1609
12 TraesCS4D01G330900 chr2A 773324924 773325607 683 True 1011.0 1011 93.7130 2333 3001 1 chr2A.!!$R3 668
13 TraesCS4D01G330900 chr5D 388593173 388595081 1908 False 2817.0 2817 93.5900 444 2323 1 chr5D.!!$F1 1879
14 TraesCS4D01G330900 chr5D 449487576 449490408 2832 False 1310.5 2362 91.7260 444 3001 2 chr5D.!!$F2 2557
15 TraesCS4D01G330900 chr2B 80550843 80552445 1602 True 2566.0 2566 95.5790 630 2230 1 chr2B.!!$R1 1600
16 TraesCS4D01G330900 chr1A 571998759 572001181 2422 True 1786.5 2529 94.1595 630 3001 2 chr1A.!!$R1 2371
17 TraesCS4D01G330900 chr7A 689936618 689939063 2445 False 1790.0 2519 94.2400 630 2998 2 chr7A.!!$F1 2368
18 TraesCS4D01G330900 chr5B 418360604 418362483 1879 True 1378.0 2447 88.5375 444 2323 2 chr5B.!!$R1 1879
19 TraesCS4D01G330900 chr2D 380679029 380680713 1684 False 2425.0 2425 93.0590 1352 3001 1 chr2D.!!$F1 1649
20 TraesCS4D01G330900 chr3D 590154237 590155922 1685 False 2422.0 2422 93.0000 1352 3001 1 chr3D.!!$F1 1649
21 TraesCS4D01G330900 chr1B 548828350 548830719 2369 True 1791.0 2124 93.8175 630 3001 2 chr1B.!!$R1 2371
22 TraesCS4D01G330900 chr6A 116691983 116692668 685 False 1038.0 1038 94.3230 2327 2998 1 chr6A.!!$F1 671

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
300 301 0.036671 CTGGCAGTGCATGTCTGAGA 60.037 55.0 18.61 7.38 34.59 3.27 F
301 302 0.397564 TGGCAGTGCATGTCTGAGAA 59.602 50.0 18.61 5.45 33.40 2.87 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1987 2325 0.035630 AGCACTTCACTCCTCCATGC 60.036 55.0 0.0 0.0 0.0 4.06 R
2192 2551 1.006813 TGGTTCAGGGGGCATTACAT 58.993 50.0 0.0 0.0 0.0 2.29 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.485554 ACTTGCTCGATCGCTGAC 57.514 55.556 11.09 0.00 0.00 3.51
18 19 1.586541 ACTTGCTCGATCGCTGACA 59.413 52.632 11.09 2.59 0.00 3.58
19 20 0.457509 ACTTGCTCGATCGCTGACAG 60.458 55.000 11.09 3.05 0.00 3.51
20 21 1.144565 CTTGCTCGATCGCTGACAGG 61.145 60.000 11.09 2.42 0.00 4.00
21 22 1.595093 TTGCTCGATCGCTGACAGGA 61.595 55.000 11.09 0.00 0.00 3.86
22 23 1.139734 GCTCGATCGCTGACAGGAA 59.860 57.895 11.09 0.00 0.00 3.36
23 24 0.249238 GCTCGATCGCTGACAGGAAT 60.249 55.000 11.09 0.00 0.00 3.01
24 25 1.001268 GCTCGATCGCTGACAGGAATA 60.001 52.381 11.09 0.00 0.00 1.75
25 26 2.352225 GCTCGATCGCTGACAGGAATAT 60.352 50.000 11.09 0.00 0.00 1.28
26 27 3.119814 GCTCGATCGCTGACAGGAATATA 60.120 47.826 11.09 0.00 0.00 0.86
27 28 4.407818 CTCGATCGCTGACAGGAATATAC 58.592 47.826 11.09 0.00 0.00 1.47
28 29 3.818773 TCGATCGCTGACAGGAATATACA 59.181 43.478 11.09 0.00 0.00 2.29
29 30 4.277423 TCGATCGCTGACAGGAATATACAA 59.723 41.667 11.09 0.00 0.00 2.41
30 31 4.383052 CGATCGCTGACAGGAATATACAAC 59.617 45.833 0.26 0.00 0.00 3.32
31 32 4.054780 TCGCTGACAGGAATATACAACC 57.945 45.455 4.26 0.00 0.00 3.77
32 33 3.449377 TCGCTGACAGGAATATACAACCA 59.551 43.478 4.26 0.00 0.00 3.67
33 34 4.100963 TCGCTGACAGGAATATACAACCAT 59.899 41.667 4.26 0.00 0.00 3.55
34 35 4.449068 CGCTGACAGGAATATACAACCATC 59.551 45.833 4.26 0.00 0.00 3.51
35 36 5.615289 GCTGACAGGAATATACAACCATCT 58.385 41.667 4.26 0.00 0.00 2.90
36 37 6.058183 GCTGACAGGAATATACAACCATCTT 58.942 40.000 4.26 0.00 0.00 2.40
37 38 6.203723 GCTGACAGGAATATACAACCATCTTC 59.796 42.308 4.26 0.00 0.00 2.87
38 39 7.194112 TGACAGGAATATACAACCATCTTCA 57.806 36.000 0.00 0.00 0.00 3.02
39 40 7.629157 TGACAGGAATATACAACCATCTTCAA 58.371 34.615 0.00 0.00 0.00 2.69
40 41 8.106462 TGACAGGAATATACAACCATCTTCAAA 58.894 33.333 0.00 0.00 0.00 2.69
41 42 8.281212 ACAGGAATATACAACCATCTTCAAAC 57.719 34.615 0.00 0.00 0.00 2.93
42 43 8.109634 ACAGGAATATACAACCATCTTCAAACT 58.890 33.333 0.00 0.00 0.00 2.66
43 44 8.400947 CAGGAATATACAACCATCTTCAAACTG 58.599 37.037 0.00 0.00 0.00 3.16
44 45 8.328758 AGGAATATACAACCATCTTCAAACTGA 58.671 33.333 0.00 0.00 0.00 3.41
45 46 9.125026 GGAATATACAACCATCTTCAAACTGAT 57.875 33.333 0.00 0.00 0.00 2.90
48 49 4.874970 ACAACCATCTTCAAACTGATTGC 58.125 39.130 0.00 0.00 38.98 3.56
49 50 4.240096 CAACCATCTTCAAACTGATTGCC 58.760 43.478 0.00 0.00 38.98 4.52
50 51 2.489329 ACCATCTTCAAACTGATTGCCG 59.511 45.455 0.00 0.00 38.98 5.69
51 52 2.159338 CCATCTTCAAACTGATTGCCGG 60.159 50.000 0.00 0.00 38.98 6.13
52 53 2.270352 TCTTCAAACTGATTGCCGGT 57.730 45.000 1.90 0.00 38.98 5.28
53 54 3.410631 TCTTCAAACTGATTGCCGGTA 57.589 42.857 1.90 0.00 38.98 4.02
54 55 3.071479 TCTTCAAACTGATTGCCGGTAC 58.929 45.455 1.90 0.00 38.98 3.34
55 56 1.434555 TCAAACTGATTGCCGGTACG 58.565 50.000 1.90 0.00 44.95 3.67
67 68 4.580551 GGTACGACCGGGGCGATG 62.581 72.222 32.23 0.00 0.00 3.84
68 69 3.830192 GTACGACCGGGGCGATGT 61.830 66.667 32.23 9.60 0.00 3.06
69 70 3.829044 TACGACCGGGGCGATGTG 61.829 66.667 32.23 0.00 0.00 3.21
71 72 4.873129 CGACCGGGGCGATGTGAG 62.873 72.222 19.89 0.00 0.00 3.51
72 73 3.458163 GACCGGGGCGATGTGAGA 61.458 66.667 6.32 0.00 0.00 3.27
73 74 3.432051 GACCGGGGCGATGTGAGAG 62.432 68.421 6.32 0.00 0.00 3.20
74 75 4.899239 CCGGGGCGATGTGAGAGC 62.899 72.222 0.00 0.00 0.00 4.09
76 77 4.148825 GGGGCGATGTGAGAGCGT 62.149 66.667 0.00 0.00 35.31 5.07
77 78 2.125512 GGGCGATGTGAGAGCGTT 60.126 61.111 0.00 0.00 35.31 4.84
78 79 2.456119 GGGCGATGTGAGAGCGTTG 61.456 63.158 0.00 0.00 35.31 4.10
79 80 2.397252 GCGATGTGAGAGCGTTGC 59.603 61.111 0.00 0.00 35.31 4.17
80 81 3.084579 CGATGTGAGAGCGTTGCC 58.915 61.111 0.00 0.00 0.00 4.52
81 82 2.792290 CGATGTGAGAGCGTTGCCG 61.792 63.158 0.00 0.00 37.07 5.69
82 83 2.434884 ATGTGAGAGCGTTGCCGG 60.435 61.111 0.00 0.00 33.68 6.13
105 106 3.936203 GGGTGTGACGCCAGGACA 61.936 66.667 17.96 0.00 35.42 4.02
106 107 2.665185 GGTGTGACGCCAGGACAC 60.665 66.667 10.86 0.00 39.44 3.67
107 108 3.036084 GTGTGACGCCAGGACACG 61.036 66.667 0.00 0.00 37.35 4.49
108 109 4.293648 TGTGACGCCAGGACACGG 62.294 66.667 0.00 0.00 37.35 4.94
109 110 4.295119 GTGACGCCAGGACACGGT 62.295 66.667 0.00 0.00 0.00 4.83
110 111 2.598099 TGACGCCAGGACACGGTA 60.598 61.111 0.00 0.00 0.00 4.02
111 112 2.126189 GACGCCAGGACACGGTAC 60.126 66.667 0.00 0.00 0.00 3.34
130 131 1.853230 CGAATCGTGTCGTTTTCAGC 58.147 50.000 0.00 0.00 36.26 4.26
131 132 1.778568 CGAATCGTGTCGTTTTCAGCG 60.779 52.381 0.00 0.00 36.26 5.18
132 133 1.191647 GAATCGTGTCGTTTTCAGCGT 59.808 47.619 0.00 0.00 0.00 5.07
133 134 0.506932 ATCGTGTCGTTTTCAGCGTG 59.493 50.000 0.00 0.00 0.00 5.34
134 135 1.717728 CGTGTCGTTTTCAGCGTGC 60.718 57.895 0.00 0.00 0.00 5.34
135 136 1.368850 GTGTCGTTTTCAGCGTGCC 60.369 57.895 0.00 0.00 0.00 5.01
136 137 2.127758 GTCGTTTTCAGCGTGCCG 60.128 61.111 0.00 0.00 0.00 5.69
137 138 2.586635 TCGTTTTCAGCGTGCCGT 60.587 55.556 0.00 0.00 0.00 5.68
138 139 2.425124 CGTTTTCAGCGTGCCGTG 60.425 61.111 0.00 0.00 0.00 4.94
139 140 2.051345 GTTTTCAGCGTGCCGTGG 60.051 61.111 0.00 0.00 0.00 4.94
140 141 2.515057 TTTTCAGCGTGCCGTGGT 60.515 55.556 0.00 0.00 0.00 4.16
141 142 2.829206 TTTTCAGCGTGCCGTGGTG 61.829 57.895 0.00 0.00 36.21 4.17
148 149 4.344865 GTGCCGTGGTGGGTGGAT 62.345 66.667 0.00 0.00 38.63 3.41
149 150 4.028490 TGCCGTGGTGGGTGGATC 62.028 66.667 0.00 0.00 38.63 3.36
151 152 3.387091 CCGTGGTGGGTGGATCGA 61.387 66.667 0.00 0.00 0.00 3.59
152 153 2.731571 CCGTGGTGGGTGGATCGAT 61.732 63.158 0.00 0.00 0.00 3.59
153 154 1.227263 CGTGGTGGGTGGATCGATC 60.227 63.158 17.36 17.36 0.00 3.69
154 155 1.227263 GTGGTGGGTGGATCGATCG 60.227 63.158 18.81 9.36 0.00 3.69
155 156 1.380650 TGGTGGGTGGATCGATCGA 60.381 57.895 21.86 21.86 0.00 3.59
156 157 0.759060 TGGTGGGTGGATCGATCGAT 60.759 55.000 29.76 29.76 37.59 3.59
163 164 2.962569 GATCGATCGATCCGGGCA 59.037 61.111 36.97 8.99 43.71 5.36
164 165 1.153939 GATCGATCGATCCGGGCAG 60.154 63.158 36.97 4.69 43.71 4.85
165 166 2.549611 GATCGATCGATCCGGGCAGG 62.550 65.000 36.97 0.00 43.71 4.85
166 167 3.606662 CGATCGATCCGGGCAGGT 61.607 66.667 19.51 0.00 41.99 4.00
167 168 2.029666 GATCGATCCGGGCAGGTG 59.970 66.667 14.76 0.00 41.99 4.00
168 169 2.764128 ATCGATCCGGGCAGGTGT 60.764 61.111 0.00 0.00 41.99 4.16
169 170 2.978452 GATCGATCCGGGCAGGTGTG 62.978 65.000 14.76 0.00 41.99 3.82
179 180 2.674380 CAGGTGTGCTTGGGAGGC 60.674 66.667 0.00 0.00 0.00 4.70
180 181 4.335647 AGGTGTGCTTGGGAGGCG 62.336 66.667 0.00 0.00 0.00 5.52
181 182 4.329545 GGTGTGCTTGGGAGGCGA 62.330 66.667 0.00 0.00 0.00 5.54
182 183 2.743928 GTGTGCTTGGGAGGCGAG 60.744 66.667 0.00 0.00 0.00 5.03
183 184 3.241530 TGTGCTTGGGAGGCGAGT 61.242 61.111 0.00 0.00 0.00 4.18
184 185 2.743928 GTGCTTGGGAGGCGAGTG 60.744 66.667 0.00 0.00 0.00 3.51
185 186 4.020617 TGCTTGGGAGGCGAGTGG 62.021 66.667 0.00 0.00 0.00 4.00
197 198 3.166489 GGCGAGTGGCTGTATATATCC 57.834 52.381 0.00 0.00 42.94 2.59
198 199 2.479730 GGCGAGTGGCTGTATATATCCG 60.480 54.545 0.00 0.00 42.94 4.18
199 200 2.798680 CGAGTGGCTGTATATATCCGC 58.201 52.381 0.00 0.00 0.00 5.54
200 201 2.791503 CGAGTGGCTGTATATATCCGCG 60.792 54.545 0.00 0.00 34.50 6.46
201 202 1.135083 AGTGGCTGTATATATCCGCGC 60.135 52.381 0.00 0.00 34.50 6.86
202 203 0.174845 TGGCTGTATATATCCGCGCC 59.825 55.000 0.00 7.80 36.64 6.53
203 204 0.870307 GGCTGTATATATCCGCGCCG 60.870 60.000 0.00 0.00 0.00 6.46
213 214 4.530325 CCGCGCCGGCAAATGTAC 62.530 66.667 28.98 4.97 41.17 2.90
214 215 4.530325 CGCGCCGGCAAATGTACC 62.530 66.667 28.98 2.35 39.92 3.34
219 220 4.287580 CGGCAAATGTACCGTCCA 57.712 55.556 0.00 0.00 44.46 4.02
220 221 2.086510 CGGCAAATGTACCGTCCAG 58.913 57.895 0.00 0.00 44.46 3.86
221 222 1.366111 CGGCAAATGTACCGTCCAGG 61.366 60.000 0.00 0.00 44.46 4.45
222 223 1.654023 GGCAAATGTACCGTCCAGGC 61.654 60.000 0.00 0.00 46.52 4.85
223 224 1.977594 GCAAATGTACCGTCCAGGCG 61.978 60.000 0.00 0.00 46.52 5.52
224 225 0.672401 CAAATGTACCGTCCAGGCGT 60.672 55.000 0.00 0.00 46.52 5.68
225 226 0.672401 AAATGTACCGTCCAGGCGTG 60.672 55.000 0.00 0.00 46.52 5.34
226 227 1.823169 AATGTACCGTCCAGGCGTGT 61.823 55.000 5.57 3.63 46.52 4.49
227 228 2.431942 GTACCGTCCAGGCGTGTG 60.432 66.667 5.57 0.00 46.52 3.82
228 229 3.687102 TACCGTCCAGGCGTGTGG 61.687 66.667 5.57 6.82 46.52 4.17
231 232 4.619227 CGTCCAGGCGTGTGGGTT 62.619 66.667 5.57 0.00 38.26 4.11
232 233 2.203294 GTCCAGGCGTGTGGGTTT 60.203 61.111 5.57 0.00 38.26 3.27
233 234 2.203280 TCCAGGCGTGTGGGTTTG 60.203 61.111 5.57 0.00 38.26 2.93
234 235 2.203280 CCAGGCGTGTGGGTTTGA 60.203 61.111 5.57 0.00 33.46 2.69
235 236 2.260869 CCAGGCGTGTGGGTTTGAG 61.261 63.158 5.57 0.00 33.46 3.02
236 237 1.227823 CAGGCGTGTGGGTTTGAGA 60.228 57.895 0.00 0.00 0.00 3.27
237 238 0.817634 CAGGCGTGTGGGTTTGAGAA 60.818 55.000 0.00 0.00 0.00 2.87
238 239 0.535102 AGGCGTGTGGGTTTGAGAAG 60.535 55.000 0.00 0.00 0.00 2.85
239 240 1.515521 GGCGTGTGGGTTTGAGAAGG 61.516 60.000 0.00 0.00 0.00 3.46
240 241 0.534203 GCGTGTGGGTTTGAGAAGGA 60.534 55.000 0.00 0.00 0.00 3.36
241 242 1.512926 CGTGTGGGTTTGAGAAGGAG 58.487 55.000 0.00 0.00 0.00 3.69
242 243 1.878102 CGTGTGGGTTTGAGAAGGAGG 60.878 57.143 0.00 0.00 0.00 4.30
243 244 1.143073 GTGTGGGTTTGAGAAGGAGGT 59.857 52.381 0.00 0.00 0.00 3.85
244 245 2.370849 GTGTGGGTTTGAGAAGGAGGTA 59.629 50.000 0.00 0.00 0.00 3.08
245 246 2.370849 TGTGGGTTTGAGAAGGAGGTAC 59.629 50.000 0.00 0.00 0.00 3.34
246 247 1.621814 TGGGTTTGAGAAGGAGGTACG 59.378 52.381 0.00 0.00 0.00 3.67
247 248 1.622312 GGGTTTGAGAAGGAGGTACGT 59.378 52.381 0.00 0.00 0.00 3.57
248 249 2.827921 GGGTTTGAGAAGGAGGTACGTA 59.172 50.000 0.00 0.00 0.00 3.57
249 250 3.119209 GGGTTTGAGAAGGAGGTACGTAG 60.119 52.174 0.00 0.00 0.00 3.51
250 251 3.760684 GGTTTGAGAAGGAGGTACGTAGA 59.239 47.826 0.00 0.00 0.00 2.59
251 252 4.219288 GGTTTGAGAAGGAGGTACGTAGAA 59.781 45.833 0.00 0.00 0.00 2.10
252 253 5.279156 GGTTTGAGAAGGAGGTACGTAGAAA 60.279 44.000 0.00 0.00 0.00 2.52
253 254 6.218746 GTTTGAGAAGGAGGTACGTAGAAAA 58.781 40.000 0.00 0.00 0.00 2.29
254 255 5.382618 TGAGAAGGAGGTACGTAGAAAAC 57.617 43.478 0.00 0.00 0.00 2.43
255 256 4.219288 TGAGAAGGAGGTACGTAGAAAACC 59.781 45.833 0.00 0.00 0.00 3.27
256 257 4.414677 AGAAGGAGGTACGTAGAAAACCT 58.585 43.478 6.67 6.67 46.33 3.50
262 263 5.997384 AGGTACGTAGAAAACCTCTTCAT 57.003 39.130 0.94 0.00 39.46 2.57
263 264 5.721232 AGGTACGTAGAAAACCTCTTCATG 58.279 41.667 0.94 0.00 39.46 3.07
264 265 5.245526 AGGTACGTAGAAAACCTCTTCATGT 59.754 40.000 0.94 0.00 39.46 3.21
265 266 5.347907 GGTACGTAGAAAACCTCTTCATGTG 59.652 44.000 0.00 0.00 35.41 3.21
266 267 4.315803 ACGTAGAAAACCTCTTCATGTGG 58.684 43.478 0.00 0.00 35.41 4.17
267 268 4.039973 ACGTAGAAAACCTCTTCATGTGGA 59.960 41.667 0.00 0.00 35.41 4.02
268 269 4.389077 CGTAGAAAACCTCTTCATGTGGAC 59.611 45.833 0.00 0.00 35.41 4.02
269 270 3.403038 AGAAAACCTCTTCATGTGGACG 58.597 45.455 0.00 0.00 33.75 4.79
270 271 2.930826 AAACCTCTTCATGTGGACGT 57.069 45.000 0.00 0.00 33.75 4.34
271 272 2.169832 AACCTCTTCATGTGGACGTG 57.830 50.000 0.00 0.00 33.75 4.49
272 273 1.048601 ACCTCTTCATGTGGACGTGT 58.951 50.000 0.00 0.00 34.59 4.49
273 274 1.416401 ACCTCTTCATGTGGACGTGTT 59.584 47.619 0.00 0.00 34.59 3.32
274 275 2.631062 ACCTCTTCATGTGGACGTGTTA 59.369 45.455 0.00 0.00 34.59 2.41
275 276 3.260884 ACCTCTTCATGTGGACGTGTTAT 59.739 43.478 0.00 0.00 34.59 1.89
276 277 4.253685 CCTCTTCATGTGGACGTGTTATT 58.746 43.478 0.00 0.00 34.59 1.40
277 278 4.695455 CCTCTTCATGTGGACGTGTTATTT 59.305 41.667 0.00 0.00 34.59 1.40
278 279 5.390885 CCTCTTCATGTGGACGTGTTATTTG 60.391 44.000 0.00 0.00 34.59 2.32
279 280 3.822594 TCATGTGGACGTGTTATTTGC 57.177 42.857 0.00 0.00 34.59 3.68
280 281 3.142174 TCATGTGGACGTGTTATTTGCA 58.858 40.909 0.00 0.00 34.59 4.08
281 282 3.058570 TCATGTGGACGTGTTATTTGCAC 60.059 43.478 0.00 0.00 34.59 4.57
282 283 2.566913 TGTGGACGTGTTATTTGCACT 58.433 42.857 0.00 0.00 33.14 4.40
283 284 2.289274 TGTGGACGTGTTATTTGCACTG 59.711 45.455 0.00 0.00 33.14 3.66
284 285 1.876799 TGGACGTGTTATTTGCACTGG 59.123 47.619 0.00 0.00 34.91 4.00
285 286 1.401018 GGACGTGTTATTTGCACTGGC 60.401 52.381 0.00 0.00 41.68 4.85
296 297 4.391869 CACTGGCAGTGCATGTCT 57.608 55.556 32.39 0.00 39.62 3.41
297 298 1.873863 CACTGGCAGTGCATGTCTG 59.126 57.895 32.39 8.85 39.62 3.51
298 299 0.604511 CACTGGCAGTGCATGTCTGA 60.605 55.000 32.39 3.81 39.62 3.27
299 300 0.321387 ACTGGCAGTGCATGTCTGAG 60.321 55.000 21.37 12.61 36.09 3.35
300 301 0.036671 CTGGCAGTGCATGTCTGAGA 60.037 55.000 18.61 7.38 34.59 3.27
301 302 0.397564 TGGCAGTGCATGTCTGAGAA 59.602 50.000 18.61 5.45 33.40 2.87
302 303 1.003928 TGGCAGTGCATGTCTGAGAAT 59.996 47.619 18.61 0.00 33.40 2.40
303 304 1.400846 GGCAGTGCATGTCTGAGAATG 59.599 52.381 18.61 0.00 35.20 2.67
307 308 3.891786 GCATGTCTGAGAATGCACG 57.108 52.632 18.24 0.00 46.75 5.34
308 309 1.081892 GCATGTCTGAGAATGCACGT 58.918 50.000 18.24 0.00 46.75 4.49
309 310 2.270923 GCATGTCTGAGAATGCACGTA 58.729 47.619 18.24 0.00 46.75 3.57
310 311 2.029728 GCATGTCTGAGAATGCACGTAC 59.970 50.000 18.24 0.00 46.75 3.67
311 312 1.977188 TGTCTGAGAATGCACGTACG 58.023 50.000 15.01 15.01 0.00 3.67
312 313 1.268625 TGTCTGAGAATGCACGTACGT 59.731 47.619 16.72 16.72 0.00 3.57
313 314 2.485038 TGTCTGAGAATGCACGTACGTA 59.515 45.455 22.34 7.01 0.00 3.57
314 315 2.844804 GTCTGAGAATGCACGTACGTAC 59.155 50.000 22.34 16.78 0.00 3.67
315 316 2.485038 TCTGAGAATGCACGTACGTACA 59.515 45.455 22.64 22.64 0.00 2.90
316 317 3.058085 TCTGAGAATGCACGTACGTACAA 60.058 43.478 24.01 11.82 0.00 2.41
317 318 3.640592 TGAGAATGCACGTACGTACAAA 58.359 40.909 24.01 9.37 0.00 2.83
318 319 4.049869 TGAGAATGCACGTACGTACAAAA 58.950 39.130 24.01 7.64 0.00 2.44
319 320 4.084952 TGAGAATGCACGTACGTACAAAAC 60.085 41.667 24.01 17.01 0.00 2.43
320 321 3.184986 AGAATGCACGTACGTACAAAACC 59.815 43.478 24.01 13.26 0.00 3.27
321 322 2.222007 TGCACGTACGTACAAAACCT 57.778 45.000 22.34 0.00 0.00 3.50
322 323 2.126467 TGCACGTACGTACAAAACCTC 58.874 47.619 22.34 7.21 0.00 3.85
323 324 1.123038 GCACGTACGTACAAAACCTCG 59.877 52.381 22.34 10.98 0.00 4.63
324 325 2.649516 CACGTACGTACAAAACCTCGA 58.350 47.619 22.34 0.00 0.00 4.04
325 326 3.236816 CACGTACGTACAAAACCTCGAT 58.763 45.455 22.34 0.00 0.00 3.59
326 327 3.058520 CACGTACGTACAAAACCTCGATG 59.941 47.826 22.34 6.87 0.00 3.84
327 328 3.058293 ACGTACGTACAAAACCTCGATGA 60.058 43.478 21.41 0.00 0.00 2.92
328 329 4.100529 CGTACGTACAAAACCTCGATGAT 58.899 43.478 24.50 0.00 0.00 2.45
329 330 4.560035 CGTACGTACAAAACCTCGATGATT 59.440 41.667 24.50 0.00 0.00 2.57
330 331 5.738693 CGTACGTACAAAACCTCGATGATTA 59.261 40.000 24.50 0.00 0.00 1.75
331 332 6.075728 CGTACGTACAAAACCTCGATGATTAG 60.076 42.308 24.50 0.00 0.00 1.73
332 333 5.717119 ACGTACAAAACCTCGATGATTAGT 58.283 37.500 0.00 0.00 0.00 2.24
333 334 6.161381 ACGTACAAAACCTCGATGATTAGTT 58.839 36.000 0.00 0.00 0.00 2.24
334 335 6.647895 ACGTACAAAACCTCGATGATTAGTTT 59.352 34.615 0.00 0.00 32.26 2.66
335 336 6.953743 CGTACAAAACCTCGATGATTAGTTTG 59.046 38.462 0.00 0.00 31.39 2.93
336 337 6.877611 ACAAAACCTCGATGATTAGTTTGT 57.122 33.333 0.00 0.00 31.39 2.83
337 338 7.272037 ACAAAACCTCGATGATTAGTTTGTT 57.728 32.000 0.00 0.00 31.39 2.83
338 339 7.138736 ACAAAACCTCGATGATTAGTTTGTTG 58.861 34.615 0.00 0.00 31.39 3.33
339 340 7.012894 ACAAAACCTCGATGATTAGTTTGTTGA 59.987 33.333 0.00 0.00 31.39 3.18
340 341 7.687941 AAACCTCGATGATTAGTTTGTTGAT 57.312 32.000 0.00 0.00 29.89 2.57
341 342 6.668541 ACCTCGATGATTAGTTTGTTGATG 57.331 37.500 0.00 0.00 0.00 3.07
342 343 5.065218 ACCTCGATGATTAGTTTGTTGATGC 59.935 40.000 0.00 0.00 0.00 3.91
343 344 5.065090 CCTCGATGATTAGTTTGTTGATGCA 59.935 40.000 0.00 0.00 0.00 3.96
344 345 6.238566 CCTCGATGATTAGTTTGTTGATGCAT 60.239 38.462 0.00 0.00 0.00 3.96
345 346 6.488817 TCGATGATTAGTTTGTTGATGCATG 58.511 36.000 2.46 0.00 0.00 4.06
346 347 5.172591 CGATGATTAGTTTGTTGATGCATGC 59.827 40.000 11.82 11.82 0.00 4.06
347 348 5.388408 TGATTAGTTTGTTGATGCATGCA 57.612 34.783 25.04 25.04 0.00 3.96
348 349 5.968254 TGATTAGTTTGTTGATGCATGCAT 58.032 33.333 32.66 32.66 39.69 3.96
349 350 5.808030 TGATTAGTTTGTTGATGCATGCATG 59.192 36.000 36.73 22.70 36.70 4.06
350 351 3.945981 AGTTTGTTGATGCATGCATGA 57.054 38.095 36.73 27.04 36.70 3.07
351 352 4.260139 AGTTTGTTGATGCATGCATGAA 57.740 36.364 36.73 31.08 36.70 2.57
352 353 4.242475 AGTTTGTTGATGCATGCATGAAG 58.758 39.130 36.73 4.30 36.70 3.02
353 354 4.021807 AGTTTGTTGATGCATGCATGAAGA 60.022 37.500 36.73 29.19 36.70 2.87
354 355 3.497297 TGTTGATGCATGCATGAAGAC 57.503 42.857 36.73 23.74 36.70 3.01
355 356 2.159490 TGTTGATGCATGCATGAAGACG 60.159 45.455 36.73 2.65 36.70 4.18
356 357 1.741528 TGATGCATGCATGAAGACGT 58.258 45.000 36.73 12.27 36.70 4.34
357 358 2.903798 TGATGCATGCATGAAGACGTA 58.096 42.857 36.73 10.05 36.70 3.57
358 359 3.469739 TGATGCATGCATGAAGACGTAT 58.530 40.909 36.73 10.61 36.70 3.06
359 360 4.630111 TGATGCATGCATGAAGACGTATA 58.370 39.130 36.73 2.52 36.70 1.47
360 361 5.240121 TGATGCATGCATGAAGACGTATAT 58.760 37.500 36.73 9.79 36.70 0.86
361 362 5.349543 TGATGCATGCATGAAGACGTATATC 59.650 40.000 36.73 18.61 36.70 1.63
362 363 3.996363 TGCATGCATGAAGACGTATATCC 59.004 43.478 30.64 7.94 0.00 2.59
363 364 3.996363 GCATGCATGAAGACGTATATCCA 59.004 43.478 30.64 0.00 0.00 3.41
364 365 4.092529 GCATGCATGAAGACGTATATCCAG 59.907 45.833 30.64 0.00 0.00 3.86
365 366 4.257267 TGCATGAAGACGTATATCCAGG 57.743 45.455 0.00 0.00 0.00 4.45
366 367 3.895041 TGCATGAAGACGTATATCCAGGA 59.105 43.478 0.00 0.00 0.00 3.86
367 368 4.021981 TGCATGAAGACGTATATCCAGGAG 60.022 45.833 0.00 0.00 0.00 3.69
368 369 4.218635 GCATGAAGACGTATATCCAGGAGA 59.781 45.833 0.00 0.00 0.00 3.71
369 370 5.621104 GCATGAAGACGTATATCCAGGAGAG 60.621 48.000 0.00 0.00 0.00 3.20
370 371 5.306114 TGAAGACGTATATCCAGGAGAGA 57.694 43.478 0.00 0.00 0.00 3.10
371 372 5.064558 TGAAGACGTATATCCAGGAGAGAC 58.935 45.833 0.00 0.00 0.00 3.36
372 373 4.708576 AGACGTATATCCAGGAGAGACA 57.291 45.455 9.49 0.00 0.00 3.41
373 374 5.050126 AGACGTATATCCAGGAGAGACAA 57.950 43.478 9.49 0.00 0.00 3.18
374 375 5.446860 AGACGTATATCCAGGAGAGACAAA 58.553 41.667 9.49 0.00 0.00 2.83
375 376 5.892119 AGACGTATATCCAGGAGAGACAAAA 59.108 40.000 9.49 0.00 0.00 2.44
376 377 6.551601 AGACGTATATCCAGGAGAGACAAAAT 59.448 38.462 9.49 0.00 0.00 1.82
377 378 7.724506 AGACGTATATCCAGGAGAGACAAAATA 59.275 37.037 9.49 0.00 0.00 1.40
378 379 8.246430 ACGTATATCCAGGAGAGACAAAATAA 57.754 34.615 9.49 0.00 0.00 1.40
379 380 8.142551 ACGTATATCCAGGAGAGACAAAATAAC 58.857 37.037 9.49 0.00 0.00 1.89
380 381 8.141909 CGTATATCCAGGAGAGACAAAATAACA 58.858 37.037 9.49 0.00 0.00 2.41
382 383 8.915057 ATATCCAGGAGAGACAAAATAACATG 57.085 34.615 0.00 0.00 0.00 3.21
383 384 6.126863 TCCAGGAGAGACAAAATAACATGT 57.873 37.500 0.00 0.00 0.00 3.21
384 385 6.173339 TCCAGGAGAGACAAAATAACATGTC 58.827 40.000 0.00 0.00 44.92 3.06
385 386 5.355350 CCAGGAGAGACAAAATAACATGTCC 59.645 44.000 0.00 0.00 45.55 4.02
386 387 5.939883 CAGGAGAGACAAAATAACATGTCCA 59.060 40.000 0.00 0.00 45.55 4.02
387 388 5.940470 AGGAGAGACAAAATAACATGTCCAC 59.060 40.000 0.00 0.00 45.55 4.02
388 389 5.705441 GGAGAGACAAAATAACATGTCCACA 59.295 40.000 0.00 0.00 45.55 4.17
389 390 6.375455 GGAGAGACAAAATAACATGTCCACAT 59.625 38.462 0.00 0.00 45.55 3.21
399 400 2.260639 ATGTCCACATGAGGAGGTCT 57.739 50.000 12.63 0.00 38.64 3.85
400 401 2.919772 TGTCCACATGAGGAGGTCTA 57.080 50.000 12.63 0.00 38.64 2.59
401 402 3.184382 TGTCCACATGAGGAGGTCTAA 57.816 47.619 12.63 0.00 38.64 2.10
402 403 3.516586 TGTCCACATGAGGAGGTCTAAA 58.483 45.455 12.63 0.00 38.64 1.85
403 404 4.104086 TGTCCACATGAGGAGGTCTAAAT 58.896 43.478 12.63 0.00 38.64 1.40
404 405 4.536090 TGTCCACATGAGGAGGTCTAAATT 59.464 41.667 12.63 0.00 38.64 1.82
405 406 5.014123 TGTCCACATGAGGAGGTCTAAATTT 59.986 40.000 12.63 0.00 38.64 1.82
406 407 5.355350 GTCCACATGAGGAGGTCTAAATTTG 59.645 44.000 12.63 0.00 38.64 2.32
407 408 5.250543 TCCACATGAGGAGGTCTAAATTTGA 59.749 40.000 7.91 0.00 32.77 2.69
408 409 5.945784 CCACATGAGGAGGTCTAAATTTGAA 59.054 40.000 2.50 0.00 0.00 2.69
409 410 6.604795 CCACATGAGGAGGTCTAAATTTGAAT 59.395 38.462 2.50 0.00 0.00 2.57
410 411 7.123247 CCACATGAGGAGGTCTAAATTTGAATT 59.877 37.037 2.50 0.00 0.00 2.17
411 412 9.177608 CACATGAGGAGGTCTAAATTTGAATTA 57.822 33.333 0.00 0.00 0.00 1.40
412 413 9.753674 ACATGAGGAGGTCTAAATTTGAATTAA 57.246 29.630 0.00 0.00 0.00 1.40
415 416 9.189156 TGAGGAGGTCTAAATTTGAATTAATGG 57.811 33.333 0.00 0.00 0.00 3.16
416 417 9.190317 GAGGAGGTCTAAATTTGAATTAATGGT 57.810 33.333 0.00 0.00 0.00 3.55
417 418 9.547279 AGGAGGTCTAAATTTGAATTAATGGTT 57.453 29.630 0.00 0.00 0.00 3.67
435 436 5.603170 TGGTTAGTATACAAGGTACCTGC 57.397 43.478 17.14 0.00 0.00 4.85
436 437 5.024785 TGGTTAGTATACAAGGTACCTGCA 58.975 41.667 17.14 3.81 0.00 4.41
437 438 5.105228 TGGTTAGTATACAAGGTACCTGCAC 60.105 44.000 17.14 9.13 0.00 4.57
438 439 5.128335 GGTTAGTATACAAGGTACCTGCACT 59.872 44.000 17.14 15.56 0.00 4.40
439 440 6.351626 GGTTAGTATACAAGGTACCTGCACTT 60.352 42.308 17.14 0.00 0.00 3.16
440 441 7.147846 GGTTAGTATACAAGGTACCTGCACTTA 60.148 40.741 17.14 5.81 0.00 2.24
441 442 8.419442 GTTAGTATACAAGGTACCTGCACTTAT 58.581 37.037 17.14 10.13 0.00 1.73
442 443 9.645128 TTAGTATACAAGGTACCTGCACTTATA 57.355 33.333 17.14 9.20 0.00 0.98
523 524 7.650834 TTTTGAAAACTGACCAAAAACTCTG 57.349 32.000 0.00 0.00 36.99 3.35
572 573 8.408043 AAAACTACCAGATCAATTTGATGACA 57.592 30.769 16.41 0.00 37.20 3.58
577 578 7.713734 ACCAGATCAATTTGATGACAGATTT 57.286 32.000 16.41 0.00 37.20 2.17
578 579 8.130671 ACCAGATCAATTTGATGACAGATTTT 57.869 30.769 16.41 0.00 37.20 1.82
617 618 2.610859 ACAGATCCGGCCCACCTT 60.611 61.111 0.00 0.00 0.00 3.50
719 749 2.650116 CGTCCTCCCCACCTCACTG 61.650 68.421 0.00 0.00 0.00 3.66
784 1087 4.346418 TCCACTGCTTCTCTTCTTCTTCTT 59.654 41.667 0.00 0.00 0.00 2.52
845 1153 0.729816 GCAACGAGACCTCTGACGAC 60.730 60.000 0.00 0.00 0.00 4.34
1016 1334 6.772605 TGATATATATGTGTTTCCTGCTGCT 58.227 36.000 0.00 0.00 0.00 4.24
1560 1890 5.185828 TGGGATATGTATCATGAGGAGAACG 59.814 44.000 0.09 0.00 34.40 3.95
1787 2123 2.094854 GCAGGCAAAGATTGAGGTTCAG 60.095 50.000 0.00 0.00 0.00 3.02
1823 2159 3.135530 AGCTCAAGAAAGAACAGAGGTGT 59.864 43.478 0.00 0.00 39.19 4.16
1981 2319 3.057946 GGGTGCAAAGAAAAGCTAGACAG 60.058 47.826 0.00 0.00 0.00 3.51
1985 2323 4.456911 TGCAAAGAAAAGCTAGACAGGATG 59.543 41.667 0.00 0.00 46.00 3.51
1986 2324 4.142513 GCAAAGAAAAGCTAGACAGGATGG 60.143 45.833 0.00 0.00 43.62 3.51
1987 2325 3.922171 AGAAAAGCTAGACAGGATGGG 57.078 47.619 0.00 0.00 43.62 4.00
2005 2352 1.028868 GGCATGGAGGAGTGAAGTGC 61.029 60.000 0.00 0.00 0.00 4.40
2242 2603 8.267620 TCCAGATGTTGTTATATCTCCATCTT 57.732 34.615 10.54 0.46 37.52 2.40
2323 2726 6.368516 CCAAACAACACTGAAACTGAAAATGT 59.631 34.615 0.00 0.00 0.00 2.71
2324 2727 7.411804 CCAAACAACACTGAAACTGAAAATGTC 60.412 37.037 0.00 0.00 0.00 3.06
2325 2728 6.515272 ACAACACTGAAACTGAAAATGTCT 57.485 33.333 0.00 0.00 0.00 3.41
2326 2729 6.324819 ACAACACTGAAACTGAAAATGTCTG 58.675 36.000 0.00 0.00 0.00 3.51
2327 2730 6.150976 ACAACACTGAAACTGAAAATGTCTGA 59.849 34.615 0.00 0.00 0.00 3.27
2329 2732 5.297776 ACACTGAAACTGAAAATGTCTGAGG 59.702 40.000 0.00 0.00 0.00 3.86
2331 2734 6.206243 CACTGAAACTGAAAATGTCTGAGGAT 59.794 38.462 0.00 0.00 0.00 3.24
2633 3132 4.502939 TGCAGTGCTGGTGGTGCA 62.503 61.111 17.60 0.00 43.50 4.57
2851 3350 1.347817 CGTTGCTTCTCCTCACTCGC 61.348 60.000 0.00 0.00 0.00 5.03
2896 3395 1.918262 TCCATCCACCAGCTCTTGAAT 59.082 47.619 0.00 0.00 0.00 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.457509 CTGTCAGCGATCGAGCAAGT 60.458 55.000 21.57 0.00 40.15 3.16
1 2 1.144565 CCTGTCAGCGATCGAGCAAG 61.145 60.000 21.57 8.66 40.15 4.01
2 3 1.153765 CCTGTCAGCGATCGAGCAA 60.154 57.895 21.57 0.00 40.15 3.91
3 4 1.595093 TTCCTGTCAGCGATCGAGCA 61.595 55.000 21.57 9.95 40.15 4.26
4 5 0.249238 ATTCCTGTCAGCGATCGAGC 60.249 55.000 21.57 1.03 37.41 5.03
5 6 3.567576 ATATTCCTGTCAGCGATCGAG 57.432 47.619 21.57 10.63 0.00 4.04
6 7 3.818773 TGTATATTCCTGTCAGCGATCGA 59.181 43.478 21.57 0.00 0.00 3.59
7 8 4.160736 TGTATATTCCTGTCAGCGATCG 57.839 45.455 11.69 11.69 0.00 3.69
8 9 4.686554 GGTTGTATATTCCTGTCAGCGATC 59.313 45.833 0.00 0.00 0.00 3.69
9 10 4.100963 TGGTTGTATATTCCTGTCAGCGAT 59.899 41.667 0.00 0.00 0.00 4.58
10 11 3.449377 TGGTTGTATATTCCTGTCAGCGA 59.551 43.478 0.00 0.00 0.00 4.93
11 12 3.792401 TGGTTGTATATTCCTGTCAGCG 58.208 45.455 0.00 0.00 0.00 5.18
12 13 5.615289 AGATGGTTGTATATTCCTGTCAGC 58.385 41.667 0.00 0.00 0.00 4.26
13 14 7.275183 TGAAGATGGTTGTATATTCCTGTCAG 58.725 38.462 0.00 0.00 29.48 3.51
14 15 7.194112 TGAAGATGGTTGTATATTCCTGTCA 57.806 36.000 0.00 0.00 29.48 3.58
15 16 8.398665 GTTTGAAGATGGTTGTATATTCCTGTC 58.601 37.037 0.00 0.00 29.48 3.51
16 17 8.109634 AGTTTGAAGATGGTTGTATATTCCTGT 58.890 33.333 0.00 0.00 29.48 4.00
17 18 8.400947 CAGTTTGAAGATGGTTGTATATTCCTG 58.599 37.037 0.00 0.00 29.48 3.86
18 19 8.328758 TCAGTTTGAAGATGGTTGTATATTCCT 58.671 33.333 0.00 0.00 29.48 3.36
19 20 8.506168 TCAGTTTGAAGATGGTTGTATATTCC 57.494 34.615 0.00 0.00 29.48 3.01
22 23 8.408601 GCAATCAGTTTGAAGATGGTTGTATAT 58.591 33.333 6.58 0.00 37.37 0.86
23 24 7.148086 GGCAATCAGTTTGAAGATGGTTGTATA 60.148 37.037 6.58 0.00 37.37 1.47
24 25 6.350445 GGCAATCAGTTTGAAGATGGTTGTAT 60.350 38.462 6.58 0.00 37.37 2.29
25 26 5.048083 GGCAATCAGTTTGAAGATGGTTGTA 60.048 40.000 6.58 0.00 37.37 2.41
26 27 4.262164 GGCAATCAGTTTGAAGATGGTTGT 60.262 41.667 6.58 0.00 37.37 3.32
27 28 4.240096 GGCAATCAGTTTGAAGATGGTTG 58.760 43.478 0.00 1.66 37.95 3.77
28 29 3.057315 CGGCAATCAGTTTGAAGATGGTT 60.057 43.478 0.00 0.00 37.53 3.67
29 30 2.489329 CGGCAATCAGTTTGAAGATGGT 59.511 45.455 0.00 0.00 37.53 3.55
30 31 2.159338 CCGGCAATCAGTTTGAAGATGG 60.159 50.000 0.00 0.00 37.53 3.51
31 32 2.489329 ACCGGCAATCAGTTTGAAGATG 59.511 45.455 0.00 0.00 37.53 2.90
32 33 2.795329 ACCGGCAATCAGTTTGAAGAT 58.205 42.857 0.00 0.00 37.53 2.40
33 34 2.270352 ACCGGCAATCAGTTTGAAGA 57.730 45.000 0.00 0.00 37.53 2.87
34 35 2.159707 CGTACCGGCAATCAGTTTGAAG 60.160 50.000 0.00 0.00 37.53 3.02
35 36 1.801771 CGTACCGGCAATCAGTTTGAA 59.198 47.619 0.00 0.00 37.53 2.69
36 37 1.001068 TCGTACCGGCAATCAGTTTGA 59.999 47.619 0.00 0.00 37.53 2.69
37 38 1.127951 GTCGTACCGGCAATCAGTTTG 59.872 52.381 0.00 0.00 38.43 2.93
38 39 1.435577 GTCGTACCGGCAATCAGTTT 58.564 50.000 0.00 0.00 0.00 2.66
39 40 0.390735 GGTCGTACCGGCAATCAGTT 60.391 55.000 0.00 0.00 30.88 3.16
40 41 1.217244 GGTCGTACCGGCAATCAGT 59.783 57.895 0.00 0.00 30.88 3.41
41 42 4.104143 GGTCGTACCGGCAATCAG 57.896 61.111 0.00 0.00 30.88 2.90
50 51 4.580551 CATCGCCCCGGTCGTACC 62.581 72.222 12.18 0.00 34.05 3.34
51 52 3.830192 ACATCGCCCCGGTCGTAC 61.830 66.667 12.18 0.00 0.00 3.67
52 53 3.829044 CACATCGCCCCGGTCGTA 61.829 66.667 12.18 1.78 0.00 3.43
54 55 4.873129 CTCACATCGCCCCGGTCG 62.873 72.222 0.00 3.50 0.00 4.79
55 56 3.432051 CTCTCACATCGCCCCGGTC 62.432 68.421 0.00 0.00 0.00 4.79
56 57 3.461773 CTCTCACATCGCCCCGGT 61.462 66.667 0.00 0.00 0.00 5.28
57 58 4.899239 GCTCTCACATCGCCCCGG 62.899 72.222 0.00 0.00 0.00 5.73
59 60 3.665675 AACGCTCTCACATCGCCCC 62.666 63.158 0.00 0.00 0.00 5.80
60 61 2.125512 AACGCTCTCACATCGCCC 60.126 61.111 0.00 0.00 0.00 6.13
61 62 3.084579 CAACGCTCTCACATCGCC 58.915 61.111 0.00 0.00 0.00 5.54
62 63 2.397252 GCAACGCTCTCACATCGC 59.603 61.111 0.00 0.00 0.00 4.58
63 64 3.084579 GGCAACGCTCTCACATCG 58.915 61.111 0.00 0.00 0.00 3.84
88 89 3.936203 TGTCCTGGCGTCACACCC 61.936 66.667 0.00 0.00 0.00 4.61
89 90 2.665185 GTGTCCTGGCGTCACACC 60.665 66.667 5.34 0.00 35.38 4.16
90 91 3.036084 CGTGTCCTGGCGTCACAC 61.036 66.667 6.37 6.37 37.63 3.82
91 92 4.293648 CCGTGTCCTGGCGTCACA 62.294 66.667 13.57 0.74 33.04 3.58
92 93 2.922950 TACCGTGTCCTGGCGTCAC 61.923 63.158 0.00 0.00 0.00 3.67
93 94 2.598099 TACCGTGTCCTGGCGTCA 60.598 61.111 0.00 0.00 0.00 4.35
94 95 2.126189 GTACCGTGTCCTGGCGTC 60.126 66.667 0.00 0.00 0.00 5.19
95 96 4.047059 CGTACCGTGTCCTGGCGT 62.047 66.667 0.00 0.00 0.00 5.68
96 97 2.552585 ATTCGTACCGTGTCCTGGCG 62.553 60.000 0.00 0.00 0.00 5.69
97 98 0.804933 GATTCGTACCGTGTCCTGGC 60.805 60.000 0.00 0.00 0.00 4.85
98 99 0.524816 CGATTCGTACCGTGTCCTGG 60.525 60.000 0.00 0.00 0.00 4.45
99 100 0.169672 ACGATTCGTACCGTGTCCTG 59.830 55.000 10.53 0.00 38.73 3.86
100 101 2.559785 ACGATTCGTACCGTGTCCT 58.440 52.632 10.53 0.00 38.73 3.85
105 106 4.751539 CGACACGATTCGTACCGT 57.248 55.556 11.99 5.87 38.32 4.83
111 112 1.778568 CGCTGAAAACGACACGATTCG 60.779 52.381 4.14 4.14 44.87 3.34
112 113 1.191647 ACGCTGAAAACGACACGATTC 59.808 47.619 0.00 0.00 0.00 2.52
113 114 1.070843 CACGCTGAAAACGACACGATT 60.071 47.619 0.00 0.00 0.00 3.34
114 115 0.506932 CACGCTGAAAACGACACGAT 59.493 50.000 0.00 0.00 0.00 3.73
115 116 1.921475 CACGCTGAAAACGACACGA 59.079 52.632 0.00 0.00 0.00 4.35
116 117 1.717728 GCACGCTGAAAACGACACG 60.718 57.895 0.00 0.00 0.00 4.49
117 118 1.368850 GGCACGCTGAAAACGACAC 60.369 57.895 0.00 0.00 0.00 3.67
118 119 3.018973 GGCACGCTGAAAACGACA 58.981 55.556 0.00 0.00 0.00 4.35
131 132 4.344865 ATCCACCCACCACGGCAC 62.345 66.667 0.00 0.00 0.00 5.01
132 133 4.028490 GATCCACCCACCACGGCA 62.028 66.667 0.00 0.00 0.00 5.69
134 135 2.644555 GATCGATCCACCCACCACGG 62.645 65.000 14.76 0.00 0.00 4.94
135 136 1.227263 GATCGATCCACCCACCACG 60.227 63.158 14.76 0.00 0.00 4.94
136 137 1.227263 CGATCGATCCACCCACCAC 60.227 63.158 19.51 0.00 0.00 4.16
137 138 0.759060 ATCGATCGATCCACCCACCA 60.759 55.000 24.60 0.00 0.00 4.17
138 139 0.038159 GATCGATCGATCCACCCACC 60.038 60.000 36.97 17.65 43.71 4.61
139 140 3.498676 GATCGATCGATCCACCCAC 57.501 57.895 36.97 18.31 43.71 4.61
147 148 2.640302 CCTGCCCGGATCGATCGAT 61.640 63.158 29.76 29.76 37.59 3.59
148 149 3.295273 CCTGCCCGGATCGATCGA 61.295 66.667 21.86 21.86 33.16 3.59
149 150 3.606662 ACCTGCCCGGATCGATCG 61.607 66.667 18.81 9.36 36.31 3.69
150 151 2.029666 CACCTGCCCGGATCGATC 59.970 66.667 17.36 17.36 36.31 3.69
151 152 2.764128 ACACCTGCCCGGATCGAT 60.764 61.111 0.73 0.00 36.31 3.59
152 153 3.770040 CACACCTGCCCGGATCGA 61.770 66.667 0.73 0.00 36.31 3.59
154 155 3.628646 AAGCACACCTGCCCGGATC 62.629 63.158 0.73 0.00 45.53 3.36
155 156 3.650950 AAGCACACCTGCCCGGAT 61.651 61.111 0.73 0.00 45.53 4.18
156 157 4.641645 CAAGCACACCTGCCCGGA 62.642 66.667 0.73 0.00 45.53 5.14
159 160 4.284550 TCCCAAGCACACCTGCCC 62.285 66.667 0.00 0.00 45.53 5.36
160 161 2.674380 CTCCCAAGCACACCTGCC 60.674 66.667 0.00 0.00 45.53 4.85
161 162 2.674380 CCTCCCAAGCACACCTGC 60.674 66.667 0.00 0.00 44.63 4.85
162 163 2.674380 GCCTCCCAAGCACACCTG 60.674 66.667 0.00 0.00 0.00 4.00
163 164 4.335647 CGCCTCCCAAGCACACCT 62.336 66.667 0.00 0.00 0.00 4.00
164 165 4.329545 TCGCCTCCCAAGCACACC 62.330 66.667 0.00 0.00 0.00 4.16
165 166 2.743928 CTCGCCTCCCAAGCACAC 60.744 66.667 0.00 0.00 0.00 3.82
166 167 3.241530 ACTCGCCTCCCAAGCACA 61.242 61.111 0.00 0.00 0.00 4.57
167 168 2.743928 CACTCGCCTCCCAAGCAC 60.744 66.667 0.00 0.00 0.00 4.40
168 169 4.020617 CCACTCGCCTCCCAAGCA 62.021 66.667 0.00 0.00 0.00 3.91
170 171 3.710722 AGCCACTCGCCTCCCAAG 61.711 66.667 0.00 0.00 38.78 3.61
171 172 4.020617 CAGCCACTCGCCTCCCAA 62.021 66.667 0.00 0.00 38.78 4.12
172 173 3.771531 TATACAGCCACTCGCCTCCCA 62.772 57.143 0.00 0.00 38.78 4.37
173 174 1.113517 TATACAGCCACTCGCCTCCC 61.114 60.000 0.00 0.00 38.78 4.30
174 175 0.969894 ATATACAGCCACTCGCCTCC 59.030 55.000 0.00 0.00 38.78 4.30
175 176 3.181485 GGATATATACAGCCACTCGCCTC 60.181 52.174 0.00 0.00 38.78 4.70
176 177 2.761208 GGATATATACAGCCACTCGCCT 59.239 50.000 0.00 0.00 38.78 5.52
177 178 2.479730 CGGATATATACAGCCACTCGCC 60.480 54.545 0.00 0.00 38.78 5.54
178 179 2.798680 CGGATATATACAGCCACTCGC 58.201 52.381 0.00 0.00 37.98 5.03
179 180 2.791503 CGCGGATATATACAGCCACTCG 60.792 54.545 0.00 0.00 0.00 4.18
180 181 2.798680 CGCGGATATATACAGCCACTC 58.201 52.381 0.00 0.00 0.00 3.51
181 182 1.135083 GCGCGGATATATACAGCCACT 60.135 52.381 8.83 0.00 0.00 4.00
182 183 1.278238 GCGCGGATATATACAGCCAC 58.722 55.000 8.83 0.00 0.00 5.01
183 184 0.174845 GGCGCGGATATATACAGCCA 59.825 55.000 20.73 0.00 42.37 4.75
184 185 0.870307 CGGCGCGGATATATACAGCC 60.870 60.000 17.35 17.35 39.68 4.85
185 186 2.578369 CGGCGCGGATATATACAGC 58.422 57.895 9.72 4.29 0.00 4.40
197 198 4.530325 GGTACATTTGCCGGCGCG 62.530 66.667 23.90 12.36 38.08 6.86
198 199 4.530325 CGGTACATTTGCCGGCGC 62.530 66.667 23.90 0.00 46.52 6.53
203 204 1.654023 GCCTGGACGGTACATTTGCC 61.654 60.000 0.00 0.00 34.25 4.52
204 205 1.800681 GCCTGGACGGTACATTTGC 59.199 57.895 0.00 0.00 34.25 3.68
205 206 0.672401 ACGCCTGGACGGTACATTTG 60.672 55.000 13.50 0.00 37.37 2.32
206 207 0.672401 CACGCCTGGACGGTACATTT 60.672 55.000 13.50 0.00 37.37 2.32
207 208 1.079405 CACGCCTGGACGGTACATT 60.079 57.895 13.50 0.00 37.37 2.71
208 209 2.280552 ACACGCCTGGACGGTACAT 61.281 57.895 13.50 0.00 37.37 2.29
209 210 2.913578 ACACGCCTGGACGGTACA 60.914 61.111 13.50 0.00 37.37 2.90
210 211 2.431942 CACACGCCTGGACGGTAC 60.432 66.667 13.50 0.00 37.37 3.34
211 212 3.687102 CCACACGCCTGGACGGTA 61.687 66.667 13.50 0.00 37.37 4.02
214 215 4.619227 AACCCACACGCCTGGACG 62.619 66.667 0.00 3.14 39.50 4.79
215 216 2.203294 AAACCCACACGCCTGGAC 60.203 61.111 0.00 0.00 32.30 4.02
216 217 2.203280 CAAACCCACACGCCTGGA 60.203 61.111 0.00 0.00 32.30 3.86
217 218 2.203280 TCAAACCCACACGCCTGG 60.203 61.111 0.00 0.00 0.00 4.45
218 219 0.817634 TTCTCAAACCCACACGCCTG 60.818 55.000 0.00 0.00 0.00 4.85
219 220 0.535102 CTTCTCAAACCCACACGCCT 60.535 55.000 0.00 0.00 0.00 5.52
220 221 1.515521 CCTTCTCAAACCCACACGCC 61.516 60.000 0.00 0.00 0.00 5.68
221 222 0.534203 TCCTTCTCAAACCCACACGC 60.534 55.000 0.00 0.00 0.00 5.34
222 223 1.512926 CTCCTTCTCAAACCCACACG 58.487 55.000 0.00 0.00 0.00 4.49
223 224 1.143073 ACCTCCTTCTCAAACCCACAC 59.857 52.381 0.00 0.00 0.00 3.82
224 225 1.518367 ACCTCCTTCTCAAACCCACA 58.482 50.000 0.00 0.00 0.00 4.17
225 226 2.612221 CGTACCTCCTTCTCAAACCCAC 60.612 54.545 0.00 0.00 0.00 4.61
226 227 1.621814 CGTACCTCCTTCTCAAACCCA 59.378 52.381 0.00 0.00 0.00 4.51
227 228 1.622312 ACGTACCTCCTTCTCAAACCC 59.378 52.381 0.00 0.00 0.00 4.11
228 229 3.760684 TCTACGTACCTCCTTCTCAAACC 59.239 47.826 0.00 0.00 0.00 3.27
229 230 5.382618 TTCTACGTACCTCCTTCTCAAAC 57.617 43.478 0.00 0.00 0.00 2.93
230 231 6.218746 GTTTTCTACGTACCTCCTTCTCAAA 58.781 40.000 0.00 0.00 0.00 2.69
231 232 5.279156 GGTTTTCTACGTACCTCCTTCTCAA 60.279 44.000 0.00 0.00 0.00 3.02
232 233 4.219288 GGTTTTCTACGTACCTCCTTCTCA 59.781 45.833 0.00 0.00 0.00 3.27
233 234 4.462132 AGGTTTTCTACGTACCTCCTTCTC 59.538 45.833 0.94 0.00 37.78 2.87
234 235 4.414677 AGGTTTTCTACGTACCTCCTTCT 58.585 43.478 0.94 0.00 37.78 2.85
235 236 4.797800 AGGTTTTCTACGTACCTCCTTC 57.202 45.455 0.94 0.00 37.78 3.46
240 241 5.245526 ACATGAAGAGGTTTTCTACGTACCT 59.754 40.000 6.67 6.67 44.75 3.08
241 242 5.347907 CACATGAAGAGGTTTTCTACGTACC 59.652 44.000 0.00 0.00 34.14 3.34
242 243 5.347907 CCACATGAAGAGGTTTTCTACGTAC 59.652 44.000 0.00 0.00 34.14 3.67
243 244 5.244402 TCCACATGAAGAGGTTTTCTACGTA 59.756 40.000 0.00 0.00 34.14 3.57
244 245 4.039973 TCCACATGAAGAGGTTTTCTACGT 59.960 41.667 0.00 0.00 34.14 3.57
245 246 4.389077 GTCCACATGAAGAGGTTTTCTACG 59.611 45.833 0.00 0.00 34.14 3.51
246 247 4.389077 CGTCCACATGAAGAGGTTTTCTAC 59.611 45.833 0.00 0.00 34.14 2.59
247 248 4.039973 ACGTCCACATGAAGAGGTTTTCTA 59.960 41.667 0.00 0.00 34.14 2.10
248 249 3.181454 ACGTCCACATGAAGAGGTTTTCT 60.181 43.478 0.00 0.00 37.93 2.52
249 250 3.058914 CACGTCCACATGAAGAGGTTTTC 60.059 47.826 0.00 0.00 0.00 2.29
250 251 2.878406 CACGTCCACATGAAGAGGTTTT 59.122 45.455 0.00 0.00 0.00 2.43
251 252 2.158813 ACACGTCCACATGAAGAGGTTT 60.159 45.455 0.00 0.00 0.00 3.27
252 253 1.416401 ACACGTCCACATGAAGAGGTT 59.584 47.619 0.00 0.00 0.00 3.50
253 254 1.048601 ACACGTCCACATGAAGAGGT 58.951 50.000 0.00 4.48 0.00 3.85
254 255 2.169832 AACACGTCCACATGAAGAGG 57.830 50.000 0.00 3.81 0.00 3.69
255 256 5.621422 CAAATAACACGTCCACATGAAGAG 58.379 41.667 0.00 0.00 0.00 2.85
256 257 4.083537 GCAAATAACACGTCCACATGAAGA 60.084 41.667 0.00 0.00 0.00 2.87
257 258 4.158384 GCAAATAACACGTCCACATGAAG 58.842 43.478 0.00 0.00 0.00 3.02
258 259 3.565902 TGCAAATAACACGTCCACATGAA 59.434 39.130 0.00 0.00 0.00 2.57
259 260 3.058570 GTGCAAATAACACGTCCACATGA 60.059 43.478 0.00 0.00 0.00 3.07
260 261 3.058293 AGTGCAAATAACACGTCCACATG 60.058 43.478 0.00 0.00 42.94 3.21
261 262 3.058293 CAGTGCAAATAACACGTCCACAT 60.058 43.478 0.00 0.00 42.94 3.21
262 263 2.289274 CAGTGCAAATAACACGTCCACA 59.711 45.455 0.00 0.00 42.94 4.17
263 264 2.350388 CCAGTGCAAATAACACGTCCAC 60.350 50.000 0.00 0.00 42.94 4.02
264 265 1.876799 CCAGTGCAAATAACACGTCCA 59.123 47.619 0.00 0.00 42.94 4.02
265 266 1.401018 GCCAGTGCAAATAACACGTCC 60.401 52.381 0.00 0.00 42.94 4.79
266 267 1.265635 TGCCAGTGCAAATAACACGTC 59.734 47.619 0.00 0.00 46.66 4.34
267 268 1.313772 TGCCAGTGCAAATAACACGT 58.686 45.000 0.00 0.00 46.66 4.49
280 281 0.321387 CTCAGACATGCACTGCCAGT 60.321 55.000 13.48 0.00 35.61 4.00
281 282 0.036671 TCTCAGACATGCACTGCCAG 60.037 55.000 13.48 8.49 35.61 4.85
282 283 0.397564 TTCTCAGACATGCACTGCCA 59.602 50.000 13.48 2.70 35.61 4.92
283 284 1.400846 CATTCTCAGACATGCACTGCC 59.599 52.381 13.48 0.00 35.61 4.85
284 285 1.202154 GCATTCTCAGACATGCACTGC 60.202 52.381 13.74 0.00 44.49 4.40
285 286 2.826979 GCATTCTCAGACATGCACTG 57.173 50.000 13.74 12.46 44.49 3.66
289 290 1.081892 ACGTGCATTCTCAGACATGC 58.918 50.000 12.40 12.40 45.20 4.06
290 291 2.279921 CGTACGTGCATTCTCAGACATG 59.720 50.000 7.22 0.00 0.00 3.21
291 292 2.094700 ACGTACGTGCATTCTCAGACAT 60.095 45.455 22.14 0.00 0.00 3.06
292 293 1.268625 ACGTACGTGCATTCTCAGACA 59.731 47.619 22.14 0.00 0.00 3.41
293 294 1.978542 ACGTACGTGCATTCTCAGAC 58.021 50.000 22.14 0.00 0.00 3.51
294 295 2.485038 TGTACGTACGTGCATTCTCAGA 59.515 45.455 31.14 9.67 35.90 3.27
295 296 2.858839 TGTACGTACGTGCATTCTCAG 58.141 47.619 31.14 0.00 35.90 3.35
296 297 2.993449 TGTACGTACGTGCATTCTCA 57.007 45.000 31.14 11.10 35.90 3.27
297 298 4.380290 GTTTTGTACGTACGTGCATTCTC 58.620 43.478 34.08 21.74 40.18 2.87
298 299 3.184986 GGTTTTGTACGTACGTGCATTCT 59.815 43.478 34.08 8.69 40.18 2.40
299 300 3.184986 AGGTTTTGTACGTACGTGCATTC 59.815 43.478 34.08 25.43 40.18 2.67
300 301 3.132925 AGGTTTTGTACGTACGTGCATT 58.867 40.909 34.08 17.47 40.18 3.56
301 302 2.733026 GAGGTTTTGTACGTACGTGCAT 59.267 45.455 34.08 21.82 40.18 3.96
302 303 2.126467 GAGGTTTTGTACGTACGTGCA 58.874 47.619 31.14 31.14 38.87 4.57
303 304 1.123038 CGAGGTTTTGTACGTACGTGC 59.877 52.381 30.25 28.42 0.00 5.34
304 305 2.649516 TCGAGGTTTTGTACGTACGTG 58.350 47.619 30.25 9.79 0.00 4.49
305 306 3.058293 TCATCGAGGTTTTGTACGTACGT 60.058 43.478 25.98 25.98 0.00 3.57
306 307 3.491356 TCATCGAGGTTTTGTACGTACG 58.509 45.455 20.18 15.01 0.00 3.67
307 308 6.749118 ACTAATCATCGAGGTTTTGTACGTAC 59.251 38.462 18.90 18.90 0.00 3.67
308 309 6.855836 ACTAATCATCGAGGTTTTGTACGTA 58.144 36.000 6.25 0.00 0.00 3.57
309 310 5.717119 ACTAATCATCGAGGTTTTGTACGT 58.283 37.500 6.25 0.00 0.00 3.57
310 311 6.642683 AACTAATCATCGAGGTTTTGTACG 57.357 37.500 8.05 0.00 0.00 3.67
311 312 7.803724 ACAAACTAATCATCGAGGTTTTGTAC 58.196 34.615 8.05 0.00 0.00 2.90
312 313 7.972832 ACAAACTAATCATCGAGGTTTTGTA 57.027 32.000 8.05 0.00 0.00 2.41
313 314 6.877611 ACAAACTAATCATCGAGGTTTTGT 57.122 33.333 0.00 0.00 0.00 2.83
314 315 7.359595 TCAACAAACTAATCATCGAGGTTTTG 58.640 34.615 0.00 0.00 0.00 2.44
315 316 7.504924 TCAACAAACTAATCATCGAGGTTTT 57.495 32.000 0.00 0.00 0.00 2.43
316 317 7.530010 CATCAACAAACTAATCATCGAGGTTT 58.470 34.615 0.00 0.00 0.00 3.27
317 318 6.403636 GCATCAACAAACTAATCATCGAGGTT 60.404 38.462 0.00 0.00 0.00 3.50
318 319 5.065218 GCATCAACAAACTAATCATCGAGGT 59.935 40.000 0.00 0.00 0.00 3.85
319 320 5.065090 TGCATCAACAAACTAATCATCGAGG 59.935 40.000 0.00 0.00 0.00 4.63
320 321 6.110543 TGCATCAACAAACTAATCATCGAG 57.889 37.500 0.00 0.00 0.00 4.04
321 322 6.488817 CATGCATCAACAAACTAATCATCGA 58.511 36.000 0.00 0.00 0.00 3.59
322 323 5.172591 GCATGCATCAACAAACTAATCATCG 59.827 40.000 14.21 0.00 0.00 3.84
323 324 6.037726 TGCATGCATCAACAAACTAATCATC 58.962 36.000 18.46 0.00 0.00 2.92
324 325 5.968254 TGCATGCATCAACAAACTAATCAT 58.032 33.333 18.46 0.00 0.00 2.45
325 326 5.388408 TGCATGCATCAACAAACTAATCA 57.612 34.783 18.46 0.00 0.00 2.57
326 327 6.037726 TCATGCATGCATCAACAAACTAATC 58.962 36.000 30.07 0.00 33.90 1.75
327 328 5.968254 TCATGCATGCATCAACAAACTAAT 58.032 33.333 30.07 2.66 33.90 1.73
328 329 5.388408 TCATGCATGCATCAACAAACTAA 57.612 34.783 30.07 0.00 33.90 2.24
329 330 5.183522 TCTTCATGCATGCATCAACAAACTA 59.816 36.000 30.07 0.00 33.90 2.24
330 331 3.945981 TCATGCATGCATCAACAAACT 57.054 38.095 30.07 4.31 33.90 2.66
331 332 4.090930 GTCTTCATGCATGCATCAACAAAC 59.909 41.667 30.07 18.17 33.90 2.93
332 333 4.239304 GTCTTCATGCATGCATCAACAAA 58.761 39.130 30.07 16.78 33.90 2.83
333 334 3.671164 CGTCTTCATGCATGCATCAACAA 60.671 43.478 30.07 17.84 33.90 2.83
334 335 2.159490 CGTCTTCATGCATGCATCAACA 60.159 45.455 30.07 9.43 33.90 3.33
335 336 2.159476 ACGTCTTCATGCATGCATCAAC 60.159 45.455 30.07 21.47 33.90 3.18
336 337 2.086094 ACGTCTTCATGCATGCATCAA 58.914 42.857 30.07 23.24 33.90 2.57
337 338 1.741528 ACGTCTTCATGCATGCATCA 58.258 45.000 30.07 16.53 33.90 3.07
338 339 5.220548 GGATATACGTCTTCATGCATGCATC 60.221 44.000 30.07 17.18 33.90 3.91
339 340 4.633126 GGATATACGTCTTCATGCATGCAT 59.367 41.667 27.46 27.46 37.08 3.96
340 341 3.996363 GGATATACGTCTTCATGCATGCA 59.004 43.478 25.04 25.04 0.00 3.96
341 342 3.996363 TGGATATACGTCTTCATGCATGC 59.004 43.478 22.25 11.82 0.00 4.06
342 343 4.628766 CCTGGATATACGTCTTCATGCATG 59.371 45.833 21.07 21.07 0.00 4.06
343 344 4.528206 TCCTGGATATACGTCTTCATGCAT 59.472 41.667 0.00 0.00 0.00 3.96
344 345 3.895041 TCCTGGATATACGTCTTCATGCA 59.105 43.478 0.00 0.00 0.00 3.96
345 346 4.218635 TCTCCTGGATATACGTCTTCATGC 59.781 45.833 0.00 0.00 0.00 4.06
346 347 5.707764 TCTCTCCTGGATATACGTCTTCATG 59.292 44.000 0.00 0.00 0.00 3.07
347 348 5.708230 GTCTCTCCTGGATATACGTCTTCAT 59.292 44.000 0.00 0.00 0.00 2.57
348 349 5.064558 GTCTCTCCTGGATATACGTCTTCA 58.935 45.833 0.00 0.00 0.00 3.02
349 350 5.064558 TGTCTCTCCTGGATATACGTCTTC 58.935 45.833 0.00 0.00 0.00 2.87
350 351 5.050126 TGTCTCTCCTGGATATACGTCTT 57.950 43.478 0.00 0.00 0.00 3.01
351 352 4.708576 TGTCTCTCCTGGATATACGTCT 57.291 45.455 0.00 0.00 0.00 4.18
352 353 5.769484 TTTGTCTCTCCTGGATATACGTC 57.231 43.478 0.00 0.00 0.00 4.34
353 354 6.732896 ATTTTGTCTCTCCTGGATATACGT 57.267 37.500 0.00 0.00 0.00 3.57
354 355 8.141909 TGTTATTTTGTCTCTCCTGGATATACG 58.858 37.037 0.00 0.00 0.00 3.06
357 358 8.497745 ACATGTTATTTTGTCTCTCCTGGATAT 58.502 33.333 0.00 0.00 0.00 1.63
358 359 7.861629 ACATGTTATTTTGTCTCTCCTGGATA 58.138 34.615 0.00 0.00 0.00 2.59
359 360 6.725364 ACATGTTATTTTGTCTCTCCTGGAT 58.275 36.000 0.00 0.00 0.00 3.41
360 361 6.126863 ACATGTTATTTTGTCTCTCCTGGA 57.873 37.500 0.00 0.00 0.00 3.86
361 362 5.355350 GGACATGTTATTTTGTCTCTCCTGG 59.645 44.000 0.00 0.00 41.55 4.45
362 363 5.939883 TGGACATGTTATTTTGTCTCTCCTG 59.060 40.000 0.00 0.00 41.55 3.86
363 364 5.940470 GTGGACATGTTATTTTGTCTCTCCT 59.060 40.000 0.00 0.00 41.55 3.69
364 365 5.705441 TGTGGACATGTTATTTTGTCTCTCC 59.295 40.000 0.00 0.00 41.55 3.71
365 366 6.801539 TGTGGACATGTTATTTTGTCTCTC 57.198 37.500 0.00 0.00 41.55 3.20
366 367 7.149569 CATGTGGACATGTTATTTTGTCTCT 57.850 36.000 11.01 0.00 46.40 3.10
380 381 2.260639 AGACCTCCTCATGTGGACAT 57.739 50.000 12.50 3.76 36.96 3.06
381 382 2.919772 TAGACCTCCTCATGTGGACA 57.080 50.000 12.50 0.00 31.94 4.02
382 383 4.762289 ATTTAGACCTCCTCATGTGGAC 57.238 45.455 12.50 3.81 31.94 4.02
383 384 5.250543 TCAAATTTAGACCTCCTCATGTGGA 59.749 40.000 15.49 15.49 34.52 4.02
384 385 5.500234 TCAAATTTAGACCTCCTCATGTGG 58.500 41.667 7.52 7.52 0.00 4.17
385 386 7.636150 ATTCAAATTTAGACCTCCTCATGTG 57.364 36.000 0.00 0.00 0.00 3.21
386 387 9.753674 TTAATTCAAATTTAGACCTCCTCATGT 57.246 29.630 0.00 0.00 0.00 3.21
389 390 9.189156 CCATTAATTCAAATTTAGACCTCCTCA 57.811 33.333 0.00 0.00 0.00 3.86
390 391 9.190317 ACCATTAATTCAAATTTAGACCTCCTC 57.810 33.333 0.00 0.00 0.00 3.71
391 392 9.547279 AACCATTAATTCAAATTTAGACCTCCT 57.453 29.630 0.00 0.00 0.00 3.69
409 410 8.206189 GCAGGTACCTTGTATACTAACCATTAA 58.794 37.037 13.15 0.00 0.00 1.40
410 411 7.345132 TGCAGGTACCTTGTATACTAACCATTA 59.655 37.037 13.15 0.00 0.00 1.90
411 412 6.157297 TGCAGGTACCTTGTATACTAACCATT 59.843 38.462 13.15 0.00 0.00 3.16
412 413 5.664006 TGCAGGTACCTTGTATACTAACCAT 59.336 40.000 13.15 0.00 0.00 3.55
413 414 5.024785 TGCAGGTACCTTGTATACTAACCA 58.975 41.667 13.15 0.00 0.00 3.67
414 415 5.128335 AGTGCAGGTACCTTGTATACTAACC 59.872 44.000 13.15 1.78 0.00 2.85
415 416 6.218108 AGTGCAGGTACCTTGTATACTAAC 57.782 41.667 13.15 0.53 0.00 2.34
416 417 6.862469 AAGTGCAGGTACCTTGTATACTAA 57.138 37.500 13.15 0.00 0.00 2.24
417 418 9.293404 CTATAAGTGCAGGTACCTTGTATACTA 57.707 37.037 13.15 0.00 0.00 1.82
418 419 8.003044 TCTATAAGTGCAGGTACCTTGTATACT 58.997 37.037 13.15 9.34 0.00 2.12
419 420 8.174733 TCTATAAGTGCAGGTACCTTGTATAC 57.825 38.462 13.15 7.14 0.00 1.47
420 421 8.003044 ACTCTATAAGTGCAGGTACCTTGTATA 58.997 37.037 13.15 8.72 36.65 1.47
421 422 6.839657 ACTCTATAAGTGCAGGTACCTTGTAT 59.160 38.462 13.15 8.05 36.65 2.29
422 423 6.192773 ACTCTATAAGTGCAGGTACCTTGTA 58.807 40.000 13.15 4.84 36.65 2.41
423 424 5.024118 ACTCTATAAGTGCAGGTACCTTGT 58.976 41.667 13.15 0.00 36.65 3.16
424 425 5.599999 ACTCTATAAGTGCAGGTACCTTG 57.400 43.478 13.15 9.30 36.65 3.61
425 426 7.916077 ATTACTCTATAAGTGCAGGTACCTT 57.084 36.000 13.15 0.00 39.11 3.50
426 427 7.563924 TCAATTACTCTATAAGTGCAGGTACCT 59.436 37.037 9.21 9.21 39.11 3.08
427 428 7.652507 GTCAATTACTCTATAAGTGCAGGTACC 59.347 40.741 2.73 2.73 39.11 3.34
428 429 8.195436 TGTCAATTACTCTATAAGTGCAGGTAC 58.805 37.037 0.00 0.00 39.11 3.34
429 430 8.301252 TGTCAATTACTCTATAAGTGCAGGTA 57.699 34.615 0.00 0.00 39.11 3.08
430 431 7.182817 TGTCAATTACTCTATAAGTGCAGGT 57.817 36.000 0.00 0.00 39.11 4.00
431 432 8.492673 TTTGTCAATTACTCTATAAGTGCAGG 57.507 34.615 0.00 0.00 39.11 4.85
487 488 7.254852 GTCAGTTTTCAAAATGTGGTAGTTCA 58.745 34.615 0.09 0.00 35.64 3.18
523 524 3.496884 TGTCACGAAATCAGCACTAAACC 59.503 43.478 0.00 0.00 0.00 3.27
561 562 8.816640 AAAACGCTAAAATCTGTCATCAAATT 57.183 26.923 0.00 0.00 0.00 1.82
563 564 9.737427 TTTAAAACGCTAAAATCTGTCATCAAA 57.263 25.926 0.00 0.00 0.00 2.69
617 618 4.388499 GGCGGCTTCCGTCCTGAA 62.388 66.667 0.00 0.00 46.90 3.02
815 1123 1.973281 CTCGTTGCTGTTGGGCCAT 60.973 57.895 7.26 0.00 0.00 4.40
845 1153 0.374063 ACTCGCTCATGTACTCGTCG 59.626 55.000 0.00 0.00 0.00 5.12
1016 1334 4.558226 ATCACAGTATCTGGAGTTTGCA 57.442 40.909 1.90 0.00 35.51 4.08
1279 1601 4.518590 TGCTGCTCTTTGCTACAATTACAA 59.481 37.500 0.00 0.00 43.37 2.41
1284 1606 3.822735 TCTTTGCTGCTCTTTGCTACAAT 59.177 39.130 0.00 0.00 43.37 2.71
1560 1890 4.957296 TCTTTGTCTTGGACTCTACCAAC 58.043 43.478 0.00 0.00 43.79 3.77
1673 2009 3.205056 TCTGCCCATCCTGGTAATCAAAT 59.795 43.478 0.00 0.00 35.17 2.32
1823 2159 7.234355 TGATATCAGCTTGACTCTGTAGGATA 58.766 38.462 0.00 0.00 33.48 2.59
1981 2319 1.150081 CACTCCTCCATGCCCATCC 59.850 63.158 0.00 0.00 0.00 3.51
1985 2323 0.393537 CACTTCACTCCTCCATGCCC 60.394 60.000 0.00 0.00 0.00 5.36
1986 2324 1.028868 GCACTTCACTCCTCCATGCC 61.029 60.000 0.00 0.00 0.00 4.40
1987 2325 0.035630 AGCACTTCACTCCTCCATGC 60.036 55.000 0.00 0.00 0.00 4.06
2005 2352 8.647796 TCATATTCACTTACCAACCATAGGTAG 58.352 37.037 0.00 0.00 42.22 3.18
2190 2549 2.583101 TGGTTCAGGGGGCATTACATAA 59.417 45.455 0.00 0.00 0.00 1.90
2192 2551 1.006813 TGGTTCAGGGGGCATTACAT 58.993 50.000 0.00 0.00 0.00 2.29
2242 2603 4.326826 ACTAGCTAGCAGCAACAAATTGA 58.673 39.130 20.91 0.00 45.56 2.57
2323 2726 6.484364 TTGTGTTATCTATGCATCCTCAGA 57.516 37.500 0.19 0.00 0.00 3.27
2324 2727 7.741027 ATTTGTGTTATCTATGCATCCTCAG 57.259 36.000 0.19 0.00 0.00 3.35
2325 2728 7.557358 ACAATTTGTGTTATCTATGCATCCTCA 59.443 33.333 0.19 0.00 37.01 3.86
2326 2729 7.934457 ACAATTTGTGTTATCTATGCATCCTC 58.066 34.615 0.19 0.00 37.01 3.71
2327 2730 7.776969 AGACAATTTGTGTTATCTATGCATCCT 59.223 33.333 0.19 0.00 41.96 3.24
2329 2732 8.615211 TCAGACAATTTGTGTTATCTATGCATC 58.385 33.333 0.19 0.00 41.96 3.91
2331 2734 7.066163 CCTCAGACAATTTGTGTTATCTATGCA 59.934 37.037 6.80 0.00 41.96 3.96
2633 3132 1.405821 GACGACGACCTCCAGATCATT 59.594 52.381 0.00 0.00 0.00 2.57
2851 3350 1.071605 CGAAGTGAGAAAGAAGGCGG 58.928 55.000 0.00 0.00 0.00 6.13
2896 3395 1.228124 GCCACAAGGTACACCAGCA 60.228 57.895 0.38 0.00 38.89 4.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.