Multiple sequence alignment - TraesCS4D01G330600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G330600 chr4D 100.000 4515 0 0 1 4515 488678445 488673931 0.000000e+00 8338.0
1 TraesCS4D01G330600 chr4D 93.031 287 18 1 627 911 421794505 421794791 6.990000e-113 418.0
2 TraesCS4D01G330600 chr4B 92.322 1667 73 19 2117 3749 626073218 626071573 0.000000e+00 2318.0
3 TraesCS4D01G330600 chr4B 89.882 1186 46 17 913 2056 626074520 626073367 0.000000e+00 1458.0
4 TraesCS4D01G330600 chr4B 87.697 634 55 15 1 625 626075141 626074522 0.000000e+00 717.0
5 TraesCS4D01G330600 chr4B 89.565 115 12 0 3688 3802 667260543 667260657 3.640000e-31 147.0
6 TraesCS4D01G330600 chr5A 95.403 979 36 5 3537 4515 670437647 670436678 0.000000e+00 1550.0
7 TraesCS4D01G330600 chr5A 93.289 760 40 6 2697 3450 670438429 670437675 0.000000e+00 1110.0
8 TraesCS4D01G330600 chr5A 82.523 658 75 21 1413 2056 670439669 670439038 3.970000e-150 542.0
9 TraesCS4D01G330600 chr5A 91.404 349 24 2 913 1260 670440322 670439979 1.470000e-129 473.0
10 TraesCS4D01G330600 chr5A 86.145 332 36 8 2117 2447 670438759 670438437 2.580000e-92 350.0
11 TraesCS4D01G330600 chr5A 87.410 278 24 8 1 274 670473007 670472737 4.390000e-80 309.0
12 TraesCS4D01G330600 chr5A 79.638 221 29 9 3688 3906 706708272 706708066 1.310000e-30 145.0
13 TraesCS4D01G330600 chr5A 90.361 83 7 1 1333 1414 670439776 670439694 1.720000e-19 108.0
14 TraesCS4D01G330600 chr5A 100.000 39 0 0 3494 3532 670437677 670437639 6.270000e-09 73.1
15 TraesCS4D01G330600 chr2D 93.448 290 17 2 627 914 448651109 448650820 3.230000e-116 429.0
16 TraesCS4D01G330600 chr2D 92.759 290 19 1 627 914 151285286 151284997 6.990000e-113 418.0
17 TraesCS4D01G330600 chr2B 93.684 285 16 1 629 911 67921775 67922059 4.170000e-115 425.0
18 TraesCS4D01G330600 chr2B 92.759 290 19 1 627 914 612071174 612070885 6.990000e-113 418.0
19 TraesCS4D01G330600 chr2B 92.759 290 19 1 627 914 612077490 612077201 6.990000e-113 418.0
20 TraesCS4D01G330600 chr3B 93.380 287 16 2 627 911 712342325 712342610 5.400000e-114 422.0
21 TraesCS4D01G330600 chr3B 92.734 289 19 1 625 911 73203170 73203458 2.510000e-112 416.0
22 TraesCS4D01G330600 chr2A 91.667 300 22 2 626 923 324289831 324290129 3.250000e-111 412.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G330600 chr4D 488673931 488678445 4514 True 8338.000000 8338 100.000000 1 4515 1 chr4D.!!$R1 4514
1 TraesCS4D01G330600 chr4B 626071573 626075141 3568 True 1497.666667 2318 89.967000 1 3749 3 chr4B.!!$R1 3748
2 TraesCS4D01G330600 chr5A 670436678 670440322 3644 True 600.871429 1550 91.303571 913 4515 7 chr5A.!!$R3 3602

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
357 364 0.179018 AAGGGTGGAAGCACTGTGTC 60.179 55.0 9.86 0.0 34.77 3.67 F
546 553 0.596082 TTGCGCTTTTCTAGGCCAAC 59.404 50.0 9.73 0.0 0.00 3.77 F
2120 2521 0.107410 AGTGCACGGTCAGGAAAACA 60.107 50.0 12.01 0.0 0.00 2.83 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1212 1223 0.246086 GCTGATAGCTCTGGGGATCG 59.754 60.000 0.00 0.0 38.45 3.69 R
2462 2892 1.001406 CCTGAAGAAGTGCTCGAGGTT 59.999 52.381 15.58 0.0 0.00 3.50 R
3808 4274 0.036577 CTGGACTGCCACTTCTCCAG 60.037 60.000 0.00 0.0 42.97 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 2.406616 GCGTTGTACTGGCCATGGG 61.407 63.158 15.13 0.00 0.00 4.00
42 43 2.032681 GGCATAGGATCGCCCCAC 59.967 66.667 0.00 0.00 42.82 4.61
68 69 2.489275 CCTGGCTGTTGTGCGGTTT 61.489 57.895 0.00 0.00 0.00 3.27
92 93 1.847328 TCGGCAGTCATCCTCTTGTA 58.153 50.000 0.00 0.00 0.00 2.41
97 98 4.441495 CGGCAGTCATCCTCTTGTACATTA 60.441 45.833 0.00 0.00 0.00 1.90
98 99 5.615289 GGCAGTCATCCTCTTGTACATTAT 58.385 41.667 0.00 0.00 0.00 1.28
153 157 2.490231 CGCGCTCGCAAAAGAAAAA 58.510 47.368 14.80 0.00 42.06 1.94
194 198 7.443259 AAAAAGGAAATTCATGCCAAATCTG 57.557 32.000 0.00 0.00 0.00 2.90
195 199 5.750352 AAGGAAATTCATGCCAAATCTGT 57.250 34.783 0.00 0.00 0.00 3.41
196 200 5.334724 AGGAAATTCATGCCAAATCTGTC 57.665 39.130 0.00 0.00 0.00 3.51
197 201 5.021458 AGGAAATTCATGCCAAATCTGTCT 58.979 37.500 0.00 0.00 0.00 3.41
231 235 7.990314 TCTCCATATGTGTATTTCAAATTCGGA 59.010 33.333 1.24 0.00 0.00 4.55
247 251 8.016497 CAAATTCGGATTTGCATTTTTAGACA 57.984 30.769 16.02 0.00 43.89 3.41
248 252 8.658609 CAAATTCGGATTTGCATTTTTAGACAT 58.341 29.630 16.02 0.00 43.89 3.06
252 259 7.821652 TCGGATTTGCATTTTTAGACATTGTA 58.178 30.769 0.00 0.00 0.00 2.41
334 341 5.923733 TTACTTTTTGAAAGTTGGGAGCA 57.076 34.783 10.90 0.00 0.00 4.26
353 360 2.094545 GCATTTAAGGGTGGAAGCACTG 60.095 50.000 0.00 0.00 34.77 3.66
357 364 0.179018 AAGGGTGGAAGCACTGTGTC 60.179 55.000 9.86 0.00 34.77 3.67
366 373 1.207593 GCACTGTGTCGAATGCCAC 59.792 57.895 9.86 0.00 31.71 5.01
381 388 0.890683 GCCACTATTGTTGCTTGCCT 59.109 50.000 0.00 0.00 32.77 4.75
420 427 1.222936 CTGGTCATCAGGGTGCCTC 59.777 63.158 0.00 0.00 39.76 4.70
451 458 6.611613 TGTGAACTCCTCTCAATGATAACT 57.388 37.500 0.00 0.00 0.00 2.24
494 501 1.556451 AGGCCAAAATTTCTCCATGCC 59.444 47.619 5.01 0.00 37.91 4.40
496 503 1.643880 CCAAAATTTCTCCATGCCGC 58.356 50.000 0.00 0.00 0.00 6.53
503 510 3.869272 CTCCATGCCGCGAACAGC 61.869 66.667 8.23 1.98 43.95 4.40
543 550 1.137614 GCTTGCGCTTTTCTAGGCC 59.862 57.895 9.73 0.00 0.00 5.19
544 551 1.586154 GCTTGCGCTTTTCTAGGCCA 61.586 55.000 9.73 0.00 0.00 5.36
546 553 0.596082 TTGCGCTTTTCTAGGCCAAC 59.404 50.000 9.73 0.00 0.00 3.77
550 557 1.197721 CGCTTTTCTAGGCCAACACAG 59.802 52.381 5.01 0.00 0.00 3.66
556 563 3.334583 TCTAGGCCAACACAGACAATC 57.665 47.619 5.01 0.00 0.00 2.67
558 565 0.606401 AGGCCAACACAGACAATCCG 60.606 55.000 5.01 0.00 0.00 4.18
577 584 1.002624 GATTGGGTGCCTCGTGGAA 60.003 57.895 7.92 0.00 34.57 3.53
595 602 4.015084 TGGAACCCGAGTTGTTTGTTTTA 58.985 39.130 0.00 0.00 35.94 1.52
599 606 5.648178 ACCCGAGTTGTTTGTTTTAAACT 57.352 34.783 9.33 0.00 35.62 2.66
604 611 6.230654 CGAGTTGTTTGTTTTAAACTTGTGC 58.769 36.000 9.33 0.00 33.14 4.57
610 617 6.706270 TGTTTGTTTTAAACTTGTGCTCCAAA 59.294 30.769 9.33 0.00 31.20 3.28
611 618 7.226720 TGTTTGTTTTAAACTTGTGCTCCAAAA 59.773 29.630 9.33 0.00 31.20 2.44
618 625 4.045636 ACTTGTGCTCCAAAACAATGAC 57.954 40.909 0.00 0.00 35.82 3.06
625 632 3.319122 GCTCCAAAACAATGACAGAGGTT 59.681 43.478 0.00 0.00 0.00 3.50
626 633 4.202151 GCTCCAAAACAATGACAGAGGTTT 60.202 41.667 0.00 0.00 35.15 3.27
627 634 5.682212 GCTCCAAAACAATGACAGAGGTTTT 60.682 40.000 8.15 8.15 42.36 2.43
628 635 6.460953 GCTCCAAAACAATGACAGAGGTTTTA 60.461 38.462 11.81 1.78 40.38 1.52
629 636 7.038154 TCCAAAACAATGACAGAGGTTTTAG 57.962 36.000 11.81 7.38 40.38 1.85
630 637 6.040391 TCCAAAACAATGACAGAGGTTTTAGG 59.960 38.462 11.81 13.76 40.38 2.69
631 638 6.215845 CAAAACAATGACAGAGGTTTTAGGG 58.784 40.000 11.81 1.51 40.38 3.53
632 639 3.421844 ACAATGACAGAGGTTTTAGGGC 58.578 45.455 0.00 0.00 0.00 5.19
633 640 3.181434 ACAATGACAGAGGTTTTAGGGCA 60.181 43.478 0.00 0.00 0.00 5.36
634 641 4.019174 CAATGACAGAGGTTTTAGGGCAT 58.981 43.478 0.00 0.00 0.00 4.40
635 642 3.350219 TGACAGAGGTTTTAGGGCATC 57.650 47.619 0.00 0.00 0.00 3.91
636 643 2.912956 TGACAGAGGTTTTAGGGCATCT 59.087 45.455 0.00 0.00 0.00 2.90
637 644 3.330701 TGACAGAGGTTTTAGGGCATCTT 59.669 43.478 0.00 0.00 0.00 2.40
638 645 3.942115 GACAGAGGTTTTAGGGCATCTTC 59.058 47.826 0.00 0.00 0.00 2.87
639 646 3.330701 ACAGAGGTTTTAGGGCATCTTCA 59.669 43.478 0.00 0.00 0.00 3.02
640 647 4.202567 ACAGAGGTTTTAGGGCATCTTCAA 60.203 41.667 0.00 0.00 0.00 2.69
641 648 4.156739 CAGAGGTTTTAGGGCATCTTCAAC 59.843 45.833 0.00 0.00 0.00 3.18
642 649 4.079253 GAGGTTTTAGGGCATCTTCAACA 58.921 43.478 0.00 0.00 0.00 3.33
643 650 4.082125 AGGTTTTAGGGCATCTTCAACAG 58.918 43.478 0.00 0.00 0.00 3.16
644 651 3.193479 GGTTTTAGGGCATCTTCAACAGG 59.807 47.826 0.00 0.00 0.00 4.00
645 652 3.806949 TTTAGGGCATCTTCAACAGGT 57.193 42.857 0.00 0.00 0.00 4.00
646 653 3.806949 TTAGGGCATCTTCAACAGGTT 57.193 42.857 0.00 0.00 0.00 3.50
647 654 1.915141 AGGGCATCTTCAACAGGTTG 58.085 50.000 5.81 5.81 41.71 3.77
648 655 1.145738 AGGGCATCTTCAACAGGTTGT 59.854 47.619 11.55 0.00 41.16 3.32
649 656 2.375174 AGGGCATCTTCAACAGGTTGTA 59.625 45.455 11.55 2.00 41.16 2.41
650 657 3.010584 AGGGCATCTTCAACAGGTTGTAT 59.989 43.478 11.55 2.74 41.16 2.29
651 658 3.129287 GGGCATCTTCAACAGGTTGTATG 59.871 47.826 11.55 13.41 41.16 2.39
652 659 3.758554 GGCATCTTCAACAGGTTGTATGT 59.241 43.478 11.55 0.00 41.16 2.29
653 660 4.218417 GGCATCTTCAACAGGTTGTATGTT 59.782 41.667 11.55 0.00 41.47 2.71
654 661 5.414454 GGCATCTTCAACAGGTTGTATGTTA 59.586 40.000 11.55 0.00 38.80 2.41
655 662 6.403636 GGCATCTTCAACAGGTTGTATGTTAG 60.404 42.308 11.55 2.78 38.80 2.34
656 663 6.149474 GCATCTTCAACAGGTTGTATGTTAGT 59.851 38.462 11.55 0.00 38.80 2.24
657 664 7.624344 GCATCTTCAACAGGTTGTATGTTAGTC 60.624 40.741 11.55 0.43 38.80 2.59
658 665 7.062749 TCTTCAACAGGTTGTATGTTAGTCT 57.937 36.000 11.55 0.00 38.80 3.24
659 666 7.506114 TCTTCAACAGGTTGTATGTTAGTCTT 58.494 34.615 11.55 0.00 38.80 3.01
660 667 7.441157 TCTTCAACAGGTTGTATGTTAGTCTTG 59.559 37.037 11.55 0.00 38.80 3.02
661 668 6.588204 TCAACAGGTTGTATGTTAGTCTTGT 58.412 36.000 11.55 0.00 38.80 3.16
662 669 7.051623 TCAACAGGTTGTATGTTAGTCTTGTT 58.948 34.615 11.55 0.00 38.80 2.83
663 670 6.861065 ACAGGTTGTATGTTAGTCTTGTTG 57.139 37.500 0.00 0.00 0.00 3.33
664 671 5.763204 ACAGGTTGTATGTTAGTCTTGTTGG 59.237 40.000 0.00 0.00 0.00 3.77
665 672 5.763204 CAGGTTGTATGTTAGTCTTGTTGGT 59.237 40.000 0.00 0.00 0.00 3.67
666 673 6.932400 CAGGTTGTATGTTAGTCTTGTTGGTA 59.068 38.462 0.00 0.00 0.00 3.25
667 674 7.442969 CAGGTTGTATGTTAGTCTTGTTGGTAA 59.557 37.037 0.00 0.00 0.00 2.85
668 675 7.994334 AGGTTGTATGTTAGTCTTGTTGGTAAA 59.006 33.333 0.00 0.00 0.00 2.01
669 676 8.623030 GGTTGTATGTTAGTCTTGTTGGTAAAA 58.377 33.333 0.00 0.00 0.00 1.52
672 679 9.344772 TGTATGTTAGTCTTGTTGGTAAAATGT 57.655 29.630 0.00 0.00 0.00 2.71
675 682 8.282455 TGTTAGTCTTGTTGGTAAAATGTTCA 57.718 30.769 0.00 0.00 0.00 3.18
676 683 8.908903 TGTTAGTCTTGTTGGTAAAATGTTCAT 58.091 29.630 0.00 0.00 0.00 2.57
677 684 9.180678 GTTAGTCTTGTTGGTAAAATGTTCATG 57.819 33.333 0.00 0.00 0.00 3.07
678 685 7.346751 AGTCTTGTTGGTAAAATGTTCATGT 57.653 32.000 0.00 0.00 0.00 3.21
679 686 7.425606 AGTCTTGTTGGTAAAATGTTCATGTC 58.574 34.615 0.00 0.00 0.00 3.06
680 687 7.068103 AGTCTTGTTGGTAAAATGTTCATGTCA 59.932 33.333 0.00 0.00 0.00 3.58
681 688 7.867403 GTCTTGTTGGTAAAATGTTCATGTCAT 59.133 33.333 0.00 0.00 0.00 3.06
682 689 8.081633 TCTTGTTGGTAAAATGTTCATGTCATC 58.918 33.333 0.00 0.00 0.00 2.92
683 690 7.282332 TGTTGGTAAAATGTTCATGTCATCA 57.718 32.000 0.00 0.00 0.00 3.07
684 691 7.720442 TGTTGGTAAAATGTTCATGTCATCAA 58.280 30.769 0.00 0.00 0.00 2.57
685 692 7.651304 TGTTGGTAAAATGTTCATGTCATCAAC 59.349 33.333 17.18 17.18 31.65 3.18
686 693 6.686630 TGGTAAAATGTTCATGTCATCAACC 58.313 36.000 0.00 15.72 0.00 3.77
687 694 6.266330 TGGTAAAATGTTCATGTCATCAACCA 59.734 34.615 18.33 18.33 33.29 3.67
688 695 7.151308 GGTAAAATGTTCATGTCATCAACCAA 58.849 34.615 0.00 0.00 0.00 3.67
689 696 7.116233 GGTAAAATGTTCATGTCATCAACCAAC 59.884 37.037 0.00 5.01 0.00 3.77
690 697 5.787953 AATGTTCATGTCATCAACCAACA 57.212 34.783 0.00 0.00 0.00 3.33
691 698 5.787953 ATGTTCATGTCATCAACCAACAA 57.212 34.783 0.00 0.00 30.19 2.83
692 699 5.185668 TGTTCATGTCATCAACCAACAAG 57.814 39.130 0.00 0.00 0.00 3.16
693 700 3.921119 TCATGTCATCAACCAACAAGC 57.079 42.857 0.00 0.00 0.00 4.01
694 701 3.489355 TCATGTCATCAACCAACAAGCT 58.511 40.909 0.00 0.00 0.00 3.74
695 702 4.650734 TCATGTCATCAACCAACAAGCTA 58.349 39.130 0.00 0.00 0.00 3.32
696 703 5.255687 TCATGTCATCAACCAACAAGCTAT 58.744 37.500 0.00 0.00 0.00 2.97
697 704 5.355071 TCATGTCATCAACCAACAAGCTATC 59.645 40.000 0.00 0.00 0.00 2.08
698 705 4.650734 TGTCATCAACCAACAAGCTATCA 58.349 39.130 0.00 0.00 0.00 2.15
699 706 5.255687 TGTCATCAACCAACAAGCTATCAT 58.744 37.500 0.00 0.00 0.00 2.45
700 707 6.413892 TGTCATCAACCAACAAGCTATCATA 58.586 36.000 0.00 0.00 0.00 2.15
701 708 6.316140 TGTCATCAACCAACAAGCTATCATAC 59.684 38.462 0.00 0.00 0.00 2.39
702 709 6.316140 GTCATCAACCAACAAGCTATCATACA 59.684 38.462 0.00 0.00 0.00 2.29
703 710 6.883756 TCATCAACCAACAAGCTATCATACAA 59.116 34.615 0.00 0.00 0.00 2.41
704 711 6.494893 TCAACCAACAAGCTATCATACAAC 57.505 37.500 0.00 0.00 0.00 3.32
705 712 6.237901 TCAACCAACAAGCTATCATACAACT 58.762 36.000 0.00 0.00 0.00 3.16
706 713 7.390823 TCAACCAACAAGCTATCATACAACTA 58.609 34.615 0.00 0.00 0.00 2.24
707 714 7.333423 TCAACCAACAAGCTATCATACAACTAC 59.667 37.037 0.00 0.00 0.00 2.73
708 715 6.947464 ACCAACAAGCTATCATACAACTACT 58.053 36.000 0.00 0.00 0.00 2.57
709 716 7.042335 ACCAACAAGCTATCATACAACTACTC 58.958 38.462 0.00 0.00 0.00 2.59
710 717 6.480320 CCAACAAGCTATCATACAACTACTCC 59.520 42.308 0.00 0.00 0.00 3.85
711 718 6.791867 ACAAGCTATCATACAACTACTCCA 57.208 37.500 0.00 0.00 0.00 3.86
712 719 7.182817 ACAAGCTATCATACAACTACTCCAA 57.817 36.000 0.00 0.00 0.00 3.53
713 720 7.796054 ACAAGCTATCATACAACTACTCCAAT 58.204 34.615 0.00 0.00 0.00 3.16
714 721 8.924303 ACAAGCTATCATACAACTACTCCAATA 58.076 33.333 0.00 0.00 0.00 1.90
715 722 9.416794 CAAGCTATCATACAACTACTCCAATAG 57.583 37.037 0.00 0.00 0.00 1.73
716 723 8.128322 AGCTATCATACAACTACTCCAATAGG 57.872 38.462 0.00 0.00 0.00 2.57
717 724 7.730784 AGCTATCATACAACTACTCCAATAGGT 59.269 37.037 0.00 0.00 35.89 3.08
718 725 8.368668 GCTATCATACAACTACTCCAATAGGTT 58.631 37.037 0.00 0.00 35.89 3.50
719 726 9.698309 CTATCATACAACTACTCCAATAGGTTG 57.302 37.037 0.00 0.00 35.89 3.77
720 727 7.490657 TCATACAACTACTCCAATAGGTTGT 57.509 36.000 12.99 12.99 34.14 3.32
721 728 8.598202 TCATACAACTACTCCAATAGGTTGTA 57.402 34.615 15.80 15.80 35.53 2.41
722 729 9.209048 TCATACAACTACTCCAATAGGTTGTAT 57.791 33.333 18.10 18.10 38.37 2.29
723 730 9.832445 CATACAACTACTCCAATAGGTTGTATT 57.168 33.333 20.05 8.91 37.33 1.89
766 773 7.909485 ATGAGAAAATAAATGGGATTGCTCT 57.091 32.000 0.00 0.00 0.00 4.09
767 774 7.338800 TGAGAAAATAAATGGGATTGCTCTC 57.661 36.000 0.00 0.00 32.12 3.20
768 775 7.121382 TGAGAAAATAAATGGGATTGCTCTCT 58.879 34.615 0.00 0.00 32.42 3.10
769 776 8.274322 TGAGAAAATAAATGGGATTGCTCTCTA 58.726 33.333 0.00 0.00 32.42 2.43
770 777 9.294614 GAGAAAATAAATGGGATTGCTCTCTAT 57.705 33.333 0.00 0.00 30.50 1.98
771 778 9.652114 AGAAAATAAATGGGATTGCTCTCTATT 57.348 29.630 0.00 0.00 0.00 1.73
774 781 8.414629 AATAAATGGGATTGCTCTCTATTTCC 57.585 34.615 0.00 0.00 0.00 3.13
775 782 5.659849 AATGGGATTGCTCTCTATTTCCT 57.340 39.130 0.00 0.00 0.00 3.36
776 783 5.659849 ATGGGATTGCTCTCTATTTCCTT 57.340 39.130 0.00 0.00 0.00 3.36
777 784 4.785301 TGGGATTGCTCTCTATTTCCTTG 58.215 43.478 0.00 0.00 0.00 3.61
778 785 4.140536 GGGATTGCTCTCTATTTCCTTGG 58.859 47.826 0.00 0.00 0.00 3.61
779 786 4.385754 GGGATTGCTCTCTATTTCCTTGGT 60.386 45.833 0.00 0.00 0.00 3.67
780 787 4.578105 GGATTGCTCTCTATTTCCTTGGTG 59.422 45.833 0.00 0.00 0.00 4.17
781 788 2.991250 TGCTCTCTATTTCCTTGGTGC 58.009 47.619 0.00 0.00 0.00 5.01
782 789 2.573462 TGCTCTCTATTTCCTTGGTGCT 59.427 45.455 0.00 0.00 0.00 4.40
783 790 3.009473 TGCTCTCTATTTCCTTGGTGCTT 59.991 43.478 0.00 0.00 0.00 3.91
784 791 3.376546 GCTCTCTATTTCCTTGGTGCTTG 59.623 47.826 0.00 0.00 0.00 4.01
785 792 4.583871 CTCTCTATTTCCTTGGTGCTTGT 58.416 43.478 0.00 0.00 0.00 3.16
786 793 4.326826 TCTCTATTTCCTTGGTGCTTGTG 58.673 43.478 0.00 0.00 0.00 3.33
787 794 2.819608 TCTATTTCCTTGGTGCTTGTGC 59.180 45.455 0.00 0.00 40.20 4.57
799 806 1.289276 GCTTGTGCAAAGGTTGTTGG 58.711 50.000 9.63 0.00 39.41 3.77
800 807 1.405391 GCTTGTGCAAAGGTTGTTGGT 60.405 47.619 9.63 0.00 39.41 3.67
801 808 2.934801 GCTTGTGCAAAGGTTGTTGGTT 60.935 45.455 9.63 0.00 39.41 3.67
802 809 3.677424 GCTTGTGCAAAGGTTGTTGGTTA 60.677 43.478 9.63 0.00 39.41 2.85
803 810 4.499183 CTTGTGCAAAGGTTGTTGGTTAA 58.501 39.130 0.00 0.00 0.00 2.01
804 811 4.744795 TGTGCAAAGGTTGTTGGTTAAT 57.255 36.364 0.00 0.00 0.00 1.40
805 812 4.688021 TGTGCAAAGGTTGTTGGTTAATC 58.312 39.130 0.00 0.00 0.00 1.75
806 813 4.404073 TGTGCAAAGGTTGTTGGTTAATCT 59.596 37.500 0.00 0.00 0.00 2.40
807 814 5.594725 TGTGCAAAGGTTGTTGGTTAATCTA 59.405 36.000 0.00 0.00 0.00 1.98
808 815 5.918576 GTGCAAAGGTTGTTGGTTAATCTAC 59.081 40.000 0.00 0.00 0.00 2.59
809 816 5.594725 TGCAAAGGTTGTTGGTTAATCTACA 59.405 36.000 0.00 0.00 0.00 2.74
810 817 6.266558 TGCAAAGGTTGTTGGTTAATCTACAT 59.733 34.615 3.82 0.00 0.00 2.29
811 818 7.448777 TGCAAAGGTTGTTGGTTAATCTACATA 59.551 33.333 3.82 0.00 0.00 2.29
812 819 7.753580 GCAAAGGTTGTTGGTTAATCTACATAC 59.246 37.037 3.82 5.72 0.00 2.39
813 820 8.788806 CAAAGGTTGTTGGTTAATCTACATACA 58.211 33.333 3.82 0.00 0.00 2.29
814 821 8.927675 AAGGTTGTTGGTTAATCTACATACAA 57.072 30.769 3.82 0.00 0.00 2.41
815 822 8.331730 AGGTTGTTGGTTAATCTACATACAAC 57.668 34.615 3.82 0.00 39.95 3.32
816 823 8.161425 AGGTTGTTGGTTAATCTACATACAACT 58.839 33.333 3.82 0.00 40.21 3.16
817 824 8.789762 GGTTGTTGGTTAATCTACATACAACTT 58.210 33.333 3.82 0.00 40.21 2.66
820 827 8.293867 TGTTGGTTAATCTACATACAACTTTGC 58.706 33.333 0.00 0.00 37.99 3.68
821 828 8.512138 GTTGGTTAATCTACATACAACTTTGCT 58.488 33.333 0.00 0.00 35.24 3.91
822 829 8.263940 TGGTTAATCTACATACAACTTTGCTC 57.736 34.615 0.00 0.00 0.00 4.26
823 830 8.100791 TGGTTAATCTACATACAACTTTGCTCT 58.899 33.333 0.00 0.00 0.00 4.09
824 831 8.604890 GGTTAATCTACATACAACTTTGCTCTC 58.395 37.037 0.00 0.00 0.00 3.20
825 832 9.372369 GTTAATCTACATACAACTTTGCTCTCT 57.628 33.333 0.00 0.00 0.00 3.10
826 833 9.587772 TTAATCTACATACAACTTTGCTCTCTC 57.412 33.333 0.00 0.00 0.00 3.20
827 834 6.842437 TCTACATACAACTTTGCTCTCTCT 57.158 37.500 0.00 0.00 0.00 3.10
828 835 7.233389 TCTACATACAACTTTGCTCTCTCTT 57.767 36.000 0.00 0.00 0.00 2.85
829 836 7.316640 TCTACATACAACTTTGCTCTCTCTTC 58.683 38.462 0.00 0.00 0.00 2.87
830 837 5.858381 ACATACAACTTTGCTCTCTCTTCA 58.142 37.500 0.00 0.00 0.00 3.02
831 838 5.698545 ACATACAACTTTGCTCTCTCTTCAC 59.301 40.000 0.00 0.00 0.00 3.18
832 839 4.142609 ACAACTTTGCTCTCTCTTCACA 57.857 40.909 0.00 0.00 0.00 3.58
833 840 4.712476 ACAACTTTGCTCTCTCTTCACAT 58.288 39.130 0.00 0.00 0.00 3.21
834 841 5.128919 ACAACTTTGCTCTCTCTTCACATT 58.871 37.500 0.00 0.00 0.00 2.71
835 842 5.591877 ACAACTTTGCTCTCTCTTCACATTT 59.408 36.000 0.00 0.00 0.00 2.32
836 843 6.767902 ACAACTTTGCTCTCTCTTCACATTTA 59.232 34.615 0.00 0.00 0.00 1.40
837 844 7.446625 ACAACTTTGCTCTCTCTTCACATTTAT 59.553 33.333 0.00 0.00 0.00 1.40
838 845 7.992754 ACTTTGCTCTCTCTTCACATTTATT 57.007 32.000 0.00 0.00 0.00 1.40
839 846 9.507329 AACTTTGCTCTCTCTTCACATTTATTA 57.493 29.630 0.00 0.00 0.00 0.98
840 847 8.940952 ACTTTGCTCTCTCTTCACATTTATTAC 58.059 33.333 0.00 0.00 0.00 1.89
841 848 8.846943 TTTGCTCTCTCTTCACATTTATTACA 57.153 30.769 0.00 0.00 0.00 2.41
842 849 9.453572 TTTGCTCTCTCTTCACATTTATTACAT 57.546 29.630 0.00 0.00 0.00 2.29
843 850 8.429493 TGCTCTCTCTTCACATTTATTACATG 57.571 34.615 0.00 0.00 0.00 3.21
844 851 7.011763 TGCTCTCTCTTCACATTTATTACATGC 59.988 37.037 0.00 0.00 0.00 4.06
845 852 7.519649 GCTCTCTCTTCACATTTATTACATGCC 60.520 40.741 0.00 0.00 0.00 4.40
846 853 7.337938 TCTCTCTTCACATTTATTACATGCCA 58.662 34.615 0.00 0.00 0.00 4.92
847 854 7.280876 TCTCTCTTCACATTTATTACATGCCAC 59.719 37.037 0.00 0.00 0.00 5.01
848 855 6.883756 TCTCTTCACATTTATTACATGCCACA 59.116 34.615 0.00 0.00 0.00 4.17
849 856 7.557358 TCTCTTCACATTTATTACATGCCACAT 59.443 33.333 0.00 0.00 0.00 3.21
850 857 7.706159 TCTTCACATTTATTACATGCCACATC 58.294 34.615 0.00 0.00 0.00 3.06
851 858 7.338957 TCTTCACATTTATTACATGCCACATCA 59.661 33.333 0.00 0.00 0.00 3.07
852 859 7.585579 TCACATTTATTACATGCCACATCAT 57.414 32.000 0.00 0.00 0.00 2.45
853 860 7.650890 TCACATTTATTACATGCCACATCATC 58.349 34.615 0.00 0.00 0.00 2.92
854 861 7.284944 TCACATTTATTACATGCCACATCATCA 59.715 33.333 0.00 0.00 0.00 3.07
855 862 7.380333 CACATTTATTACATGCCACATCATCAC 59.620 37.037 0.00 0.00 0.00 3.06
856 863 7.286087 ACATTTATTACATGCCACATCATCACT 59.714 33.333 0.00 0.00 0.00 3.41
857 864 8.785946 CATTTATTACATGCCACATCATCACTA 58.214 33.333 0.00 0.00 0.00 2.74
858 865 8.922931 TTTATTACATGCCACATCATCACTAT 57.077 30.769 0.00 0.00 0.00 2.12
859 866 6.812879 ATTACATGCCACATCATCACTATG 57.187 37.500 0.00 0.00 0.00 2.23
860 867 4.160642 ACATGCCACATCATCACTATGT 57.839 40.909 0.00 0.00 38.08 2.29
861 868 4.132336 ACATGCCACATCATCACTATGTC 58.868 43.478 0.00 0.00 35.39 3.06
862 869 3.198409 TGCCACATCATCACTATGTCC 57.802 47.619 0.00 0.00 35.39 4.02
863 870 2.773661 TGCCACATCATCACTATGTCCT 59.226 45.455 0.00 0.00 35.39 3.85
864 871 3.966665 TGCCACATCATCACTATGTCCTA 59.033 43.478 0.00 0.00 35.39 2.94
865 872 4.039609 TGCCACATCATCACTATGTCCTAG 59.960 45.833 0.00 0.00 35.39 3.02
866 873 4.281941 GCCACATCATCACTATGTCCTAGA 59.718 45.833 0.00 0.00 35.39 2.43
867 874 5.046735 GCCACATCATCACTATGTCCTAGAT 60.047 44.000 0.00 0.00 35.39 1.98
868 875 6.396450 CCACATCATCACTATGTCCTAGATG 58.604 44.000 0.00 0.00 35.39 2.90
869 876 6.396450 CACATCATCACTATGTCCTAGATGG 58.604 44.000 0.00 0.00 35.39 3.51
870 877 5.046735 ACATCATCACTATGTCCTAGATGGC 60.047 44.000 0.00 0.00 37.33 4.40
871 878 4.482990 TCATCACTATGTCCTAGATGGCA 58.517 43.478 0.00 0.00 37.33 4.92
872 879 4.901250 TCATCACTATGTCCTAGATGGCAA 59.099 41.667 0.00 0.00 37.33 4.52
873 880 5.366477 TCATCACTATGTCCTAGATGGCAAA 59.634 40.000 0.00 0.00 37.33 3.68
874 881 5.894298 TCACTATGTCCTAGATGGCAAAT 57.106 39.130 0.00 0.00 35.26 2.32
875 882 6.252599 TCACTATGTCCTAGATGGCAAATT 57.747 37.500 0.00 0.00 35.26 1.82
876 883 6.662755 TCACTATGTCCTAGATGGCAAATTT 58.337 36.000 0.00 0.00 35.26 1.82
877 884 7.801104 TCACTATGTCCTAGATGGCAAATTTA 58.199 34.615 0.00 0.00 35.26 1.40
878 885 7.715249 TCACTATGTCCTAGATGGCAAATTTAC 59.285 37.037 0.00 0.00 35.26 2.01
879 886 6.998673 ACTATGTCCTAGATGGCAAATTTACC 59.001 38.462 0.00 0.00 35.26 2.85
880 887 5.186256 TGTCCTAGATGGCAAATTTACCA 57.814 39.130 12.58 12.58 41.06 3.25
881 888 5.575157 TGTCCTAGATGGCAAATTTACCAA 58.425 37.500 14.14 0.00 39.96 3.67
882 889 5.417580 TGTCCTAGATGGCAAATTTACCAAC 59.582 40.000 14.14 11.50 39.96 3.77
883 890 5.417580 GTCCTAGATGGCAAATTTACCAACA 59.582 40.000 14.14 2.18 39.96 3.33
884 891 5.417580 TCCTAGATGGCAAATTTACCAACAC 59.582 40.000 14.14 8.85 39.96 3.32
885 892 4.535526 AGATGGCAAATTTACCAACACC 57.464 40.909 14.14 4.70 39.96 4.16
886 893 4.159557 AGATGGCAAATTTACCAACACCT 58.840 39.130 14.14 6.69 39.96 4.00
887 894 5.329399 AGATGGCAAATTTACCAACACCTA 58.671 37.500 14.14 0.00 39.96 3.08
888 895 5.957774 AGATGGCAAATTTACCAACACCTAT 59.042 36.000 14.14 0.00 39.96 2.57
889 896 6.440328 AGATGGCAAATTTACCAACACCTATT 59.560 34.615 14.14 0.00 39.96 1.73
890 897 6.426646 TGGCAAATTTACCAACACCTATTT 57.573 33.333 7.73 0.00 31.46 1.40
891 898 6.831976 TGGCAAATTTACCAACACCTATTTT 58.168 32.000 7.73 0.00 31.46 1.82
892 899 7.963532 TGGCAAATTTACCAACACCTATTTTA 58.036 30.769 7.73 0.00 31.46 1.52
893 900 8.598041 TGGCAAATTTACCAACACCTATTTTAT 58.402 29.630 7.73 0.00 31.46 1.40
908 915 9.683069 CACCTATTTTATAATTGTTGGAGATGC 57.317 33.333 0.00 0.00 0.00 3.91
909 916 8.860088 ACCTATTTTATAATTGTTGGAGATGCC 58.140 33.333 0.00 0.00 37.10 4.40
910 917 8.306761 CCTATTTTATAATTGTTGGAGATGCCC 58.693 37.037 0.00 0.00 34.97 5.36
911 918 7.673641 ATTTTATAATTGTTGGAGATGCCCA 57.326 32.000 0.00 0.00 34.97 5.36
946 953 3.699894 CTGCCACGGCTCTCCACT 61.700 66.667 9.92 0.00 42.51 4.00
947 954 3.655810 CTGCCACGGCTCTCCACTC 62.656 68.421 9.92 0.00 42.51 3.51
949 956 2.997315 CCACGGCTCTCCACTCCA 60.997 66.667 0.00 0.00 0.00 3.86
950 957 2.262915 CACGGCTCTCCACTCCAC 59.737 66.667 0.00 0.00 0.00 4.02
951 958 3.374402 ACGGCTCTCCACTCCACG 61.374 66.667 0.00 0.00 0.00 4.94
952 959 4.135153 CGGCTCTCCACTCCACGG 62.135 72.222 0.00 0.00 0.00 4.94
953 960 4.459089 GGCTCTCCACTCCACGGC 62.459 72.222 0.00 0.00 0.00 5.68
956 963 1.395826 GCTCTCCACTCCACGGCTAT 61.396 60.000 0.00 0.00 0.00 2.97
983 993 7.878547 ATCTGAAGTACTACTACCTTGGTAC 57.121 40.000 0.00 0.00 35.97 3.34
984 994 7.025520 TCTGAAGTACTACTACCTTGGTACT 57.974 40.000 0.00 0.00 44.23 2.73
985 995 8.150827 TCTGAAGTACTACTACCTTGGTACTA 57.849 38.462 0.00 0.00 42.38 1.82
1020 1031 1.739562 GGAGACCAAGCAGAGCACG 60.740 63.158 0.00 0.00 0.00 5.34
1212 1223 0.683504 TCGACCTTGGTAGGCTCCTC 60.684 60.000 0.00 0.00 46.22 3.71
1220 1231 1.152525 GTAGGCTCCTCGATCCCCA 60.153 63.158 0.00 0.00 0.00 4.96
1257 1268 2.350514 GCCAGGCTCAAGTCTGCT 59.649 61.111 3.29 0.00 45.86 4.24
1274 1363 5.827797 AGTCTGCTTGATTTTGTTCCAAGTA 59.172 36.000 0.00 0.00 39.41 2.24
1316 1405 6.538945 ACATATTTCCCGGTATTTGCTTTT 57.461 33.333 0.00 0.00 0.00 2.27
1323 1412 3.128068 CCCGGTATTTGCTTTTGTAGACC 59.872 47.826 0.00 0.00 0.00 3.85
1331 1487 2.264813 GCTTTTGTAGACCGCGATGTA 58.735 47.619 8.23 0.00 0.00 2.29
1346 1502 5.837191 CCGCGATGTATATTTTTCGTAACAC 59.163 40.000 8.23 0.00 34.24 3.32
1347 1503 5.550076 CGCGATGTATATTTTTCGTAACACG 59.450 40.000 0.00 0.00 44.19 4.49
1349 1505 6.349974 GCGATGTATATTTTTCGTAACACGTG 59.650 38.462 15.48 15.48 43.14 4.49
1446 1629 5.632347 CAGATGAACCAAAATTTCTGACAGC 59.368 40.000 0.00 0.00 34.00 4.40
1526 1711 3.345011 CATCGCCGTGTGCACACA 61.345 61.111 40.31 26.33 46.75 3.72
1608 1793 1.125093 TTTTGTCAGGGAGGGCTCGA 61.125 55.000 0.00 0.00 0.00 4.04
1630 1819 5.340932 CGAATCGATTAGTACTAGCTGCAAG 59.659 44.000 11.38 0.00 0.00 4.01
1655 1844 4.223923 AGAAACACATAGAGGCTAAGTGCT 59.776 41.667 9.07 0.00 42.39 4.40
1656 1845 5.422331 AGAAACACATAGAGGCTAAGTGCTA 59.578 40.000 9.07 0.00 42.39 3.49
1657 1846 4.657436 ACACATAGAGGCTAAGTGCTAC 57.343 45.455 9.07 0.00 42.39 3.58
1771 1963 2.421073 ACATGGACATGCAACAGAATCG 59.579 45.455 11.96 0.00 42.39 3.34
1817 2009 3.487372 TCTCAGCTATATACTGCACGGT 58.513 45.455 0.00 0.00 35.04 4.83
2005 2207 4.306600 TCACATATAGCATGCCTACAACG 58.693 43.478 15.66 0.00 0.00 4.10
2119 2520 1.021968 AAGTGCACGGTCAGGAAAAC 58.978 50.000 12.01 0.00 0.00 2.43
2120 2521 0.107410 AGTGCACGGTCAGGAAAACA 60.107 50.000 12.01 0.00 0.00 2.83
2157 2583 7.169813 GGCAAAAAGAACTAGAAGGAACAAATG 59.830 37.037 0.00 0.00 0.00 2.32
2265 2692 4.517832 AGAGTAAAGAAAATTTTCCCGCGT 59.482 37.500 24.01 9.32 37.92 6.01
2386 2816 2.586425 CAGTTTTTCTCCAAGGAGCCA 58.414 47.619 11.31 0.00 41.71 4.75
2462 2892 5.652014 ACAGTTCTTGAAAACATGAGGAACA 59.348 36.000 0.00 0.00 35.49 3.18
2487 2917 1.074752 GAGCACTTCTTCAGGCTTCG 58.925 55.000 0.00 0.00 36.59 3.79
2514 2944 2.426522 TGAGAAGAACAGATTTGGCCG 58.573 47.619 0.00 0.00 0.00 6.13
2623 3053 2.887568 CAGCCACCTCACGATCGC 60.888 66.667 16.60 0.00 0.00 4.58
2638 3068 0.940126 ATCGCGAAATGAGACCATGC 59.060 50.000 15.24 0.00 32.36 4.06
2679 3138 5.717119 CTTCAGGTAAAGCATGCATTTTCT 58.283 37.500 21.98 11.91 0.00 2.52
2686 3145 8.096414 AGGTAAAGCATGCATTTTCTGTATTTT 58.904 29.630 21.98 9.23 0.00 1.82
2765 3225 5.171476 ACAAGAACGTTGTCTCTGATATGG 58.829 41.667 5.00 0.00 0.00 2.74
2766 3226 5.047306 ACAAGAACGTTGTCTCTGATATGGA 60.047 40.000 5.00 0.00 0.00 3.41
2825 3286 0.464870 CTCTGAGCTGATGAGGGTGG 59.535 60.000 0.00 0.00 0.00 4.61
2874 3335 1.867363 AACCTAGGCGTTGATCTCCT 58.133 50.000 9.30 0.00 35.26 3.69
2930 3392 1.307430 TACTACCCTGCATGCCCCA 60.307 57.895 16.68 0.00 0.00 4.96
3105 3567 5.690865 TGTTGGTGACTTTCTTGAGGTATT 58.309 37.500 0.00 0.00 0.00 1.89
3106 3568 6.833041 TGTTGGTGACTTTCTTGAGGTATTA 58.167 36.000 0.00 0.00 0.00 0.98
3107 3569 6.708949 TGTTGGTGACTTTCTTGAGGTATTAC 59.291 38.462 0.00 0.00 0.00 1.89
3141 3603 8.132362 TGCACCCGTTGATATATTAATTTGTTC 58.868 33.333 0.00 0.00 0.00 3.18
3214 3679 6.603237 TCGTGAAGACTAAAATGCCATATG 57.397 37.500 0.00 0.00 0.00 1.78
3254 3719 4.536489 AGTCCCCAACTATTAACTTGAGCT 59.464 41.667 0.00 0.00 36.07 4.09
3259 3724 6.045955 CCCAACTATTAACTTGAGCTCTCTC 58.954 44.000 16.19 0.00 39.78 3.20
3324 3789 0.822164 AGGGTCACCGTTAATCCTCG 59.178 55.000 0.00 0.00 43.47 4.63
3445 3910 1.000019 CCTGAGGGTGGACGAGGTA 60.000 63.158 0.00 0.00 0.00 3.08
3465 3930 5.046520 AGGTAGCTAAGGTTGTTTTCTCGAT 60.047 40.000 0.00 0.00 0.00 3.59
3468 3933 4.932200 AGCTAAGGTTGTTTTCTCGATCAG 59.068 41.667 0.00 0.00 0.00 2.90
3478 3943 1.095600 TCTCGATCAGACTTGACGGG 58.904 55.000 0.00 0.00 35.83 5.28
3553 4018 4.936891 ACTTGGAGCAGAAATTTCAACAC 58.063 39.130 19.99 9.58 0.00 3.32
3558 4023 2.034558 AGCAGAAATTTCAACACCCGTG 59.965 45.455 19.99 8.00 0.00 4.94
3647 4112 3.670523 CCGATGTATACGAATGTGAGCTG 59.329 47.826 0.00 0.00 0.00 4.24
3704 4169 9.741168 CAGAATGTGTACTACTCAAAATTTACG 57.259 33.333 0.00 0.00 0.00 3.18
3808 4274 3.335579 CAGTGGAGTAACTTGCTAACCC 58.664 50.000 0.00 0.00 0.00 4.11
3813 4279 3.369576 GGAGTAACTTGCTAACCCTGGAG 60.370 52.174 0.00 0.00 0.00 3.86
3822 4288 0.984230 TAACCCTGGAGAAGTGGCAG 59.016 55.000 0.00 0.00 0.00 4.85
3837 4303 1.360192 GCAGTCCAGTGGTGCAAAC 59.640 57.895 17.58 4.99 37.16 2.93
3872 4338 1.797320 AGGCCATGGAAAATGATGGG 58.203 50.000 18.40 0.00 39.75 4.00
3933 4399 6.150976 TCAAGTTGGCCATGTTAATTAGTCTG 59.849 38.462 6.09 0.00 0.00 3.51
3958 4424 7.812191 TGTAAATAAAGTTAACTGCATGGCTTG 59.188 33.333 9.34 0.00 0.00 4.01
3974 4440 7.684111 GCATGGCTTGCCAGTAATACTGATTA 61.684 42.308 21.00 4.80 44.49 1.75
3984 4450 6.747414 AGTAATACTGATTAGGCCATGTGA 57.253 37.500 5.01 0.00 0.00 3.58
3994 4460 6.211184 TGATTAGGCCATGTGATTTTGACTTT 59.789 34.615 5.01 0.00 0.00 2.66
3999 4465 5.291971 GCCATGTGATTTTGACTTTTGAGT 58.708 37.500 0.00 0.00 0.00 3.41
4072 4538 0.798159 CGCAGTCTTGTATGCAGCAA 59.202 50.000 0.00 6.37 42.68 3.91
4122 4588 7.041107 GCCATCAAATATTCCAAGCAAAGTTA 58.959 34.615 0.00 0.00 0.00 2.24
4140 4606 4.968259 AGTTACACATGCACCTAGAACAA 58.032 39.130 0.00 0.00 0.00 2.83
4141 4607 5.560724 AGTTACACATGCACCTAGAACAAT 58.439 37.500 0.00 0.00 0.00 2.71
4142 4608 5.412594 AGTTACACATGCACCTAGAACAATG 59.587 40.000 0.00 0.00 0.00 2.82
4143 4609 2.489329 ACACATGCACCTAGAACAATGC 59.511 45.455 0.00 0.00 38.59 3.56
4144 4610 1.739466 ACATGCACCTAGAACAATGCG 59.261 47.619 0.00 0.00 41.07 4.73
4145 4611 2.009051 CATGCACCTAGAACAATGCGA 58.991 47.619 0.00 0.00 41.07 5.10
4146 4612 1.438651 TGCACCTAGAACAATGCGAC 58.561 50.000 0.00 0.00 41.07 5.19
4237 4703 9.965902 ATACTTACAATTCATTTGTCCTCTTCT 57.034 29.630 0.00 0.00 45.55 2.85
4299 4765 3.252215 CCGGAACAGTATTTGCACTTTGA 59.748 43.478 0.00 0.00 0.00 2.69
4370 4836 3.571590 TGCAGGTTCAGGGTAAACAATT 58.428 40.909 0.00 0.00 0.00 2.32
4466 4932 5.365314 TGCATAGTGGTGGAGTTCATATGTA 59.635 40.000 1.90 0.00 0.00 2.29
4473 4939 6.321690 GTGGTGGAGTTCATATGTACTCTACT 59.678 42.308 35.49 18.66 45.86 2.57
4478 4944 8.633561 TGGAGTTCATATGTACTCTACTTGATG 58.366 37.037 30.05 0.00 40.75 3.07
4512 4978 6.017605 CACCAGAACCAAATATACAGAGATGC 60.018 42.308 0.00 0.00 0.00 3.91
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 2.032681 GGTGGGGCGATCCTATGC 59.967 66.667 0.00 0.00 35.33 3.14
97 98 9.193133 CGTGTCGATGTATTAGAAGGAAAATAT 57.807 33.333 0.00 0.00 0.00 1.28
98 99 7.168637 GCGTGTCGATGTATTAGAAGGAAAATA 59.831 37.037 0.00 0.00 0.00 1.40
174 178 5.021458 AGACAGATTTGGCATGAATTTCCT 58.979 37.500 0.00 0.00 33.45 3.36
204 208 8.070171 CCGAATTTGAAATACACATATGGAGAC 58.930 37.037 7.80 0.00 0.00 3.36
223 227 8.776376 ATGTCTAAAAATGCAAATCCGAATTT 57.224 26.923 0.00 0.00 35.43 1.82
228 232 6.949578 ACAATGTCTAAAAATGCAAATCCG 57.050 33.333 0.00 0.00 0.00 4.18
311 318 6.287589 TGCTCCCAACTTTCAAAAAGTAAA 57.712 33.333 5.57 0.00 0.00 2.01
315 322 7.041848 CCTTAAATGCTCCCAACTTTCAAAAAG 60.042 37.037 0.00 0.00 0.00 2.27
316 323 6.765512 CCTTAAATGCTCCCAACTTTCAAAAA 59.234 34.615 0.00 0.00 0.00 1.94
323 330 3.165071 CACCCTTAAATGCTCCCAACTT 58.835 45.455 0.00 0.00 0.00 2.66
334 341 3.157087 CACAGTGCTTCCACCCTTAAAT 58.843 45.455 0.00 0.00 43.09 1.40
366 373 7.542025 AGAAGATAAAAGGCAAGCAACAATAG 58.458 34.615 0.00 0.00 0.00 1.73
381 388 6.716628 ACCAGCTGTCAATCAAGAAGATAAAA 59.283 34.615 13.81 0.00 35.39 1.52
413 420 0.615331 TCACAAGGATGAGAGGCACC 59.385 55.000 0.00 0.00 0.00 5.01
420 427 3.513119 TGAGAGGAGTTCACAAGGATGAG 59.487 47.826 0.00 0.00 0.00 2.90
451 458 6.239092 CCTGGTGCTTTCAATCATGCATTATA 60.239 38.462 0.00 0.00 37.76 0.98
494 501 2.152699 CCGACTACTGCTGTTCGCG 61.153 63.158 0.00 0.00 43.27 5.87
496 503 0.732880 CCACCGACTACTGCTGTTCG 60.733 60.000 0.09 6.21 0.00 3.95
503 510 1.736032 GCTAGTTGCCACCGACTACTG 60.736 57.143 0.00 0.00 36.98 2.74
509 516 2.047274 GCAGCTAGTTGCCACCGA 60.047 61.111 19.91 0.00 44.23 4.69
543 550 2.162208 CCAATCCGGATTGTCTGTGTTG 59.838 50.000 40.93 26.14 44.97 3.33
544 551 2.436417 CCAATCCGGATTGTCTGTGTT 58.564 47.619 40.93 14.85 44.97 3.32
546 553 1.340017 ACCCAATCCGGATTGTCTGTG 60.340 52.381 40.93 29.68 44.97 3.66
550 557 1.384222 GGCACCCAATCCGGATTGTC 61.384 60.000 40.93 29.41 44.97 3.18
556 563 4.096003 ACGAGGCACCCAATCCGG 62.096 66.667 0.00 0.00 0.00 5.14
558 565 2.438434 CCACGAGGCACCCAATCC 60.438 66.667 0.00 0.00 0.00 3.01
577 584 5.648178 AGTTTAAAACAAACAACTCGGGT 57.352 34.783 3.02 0.00 32.81 5.28
595 602 4.869861 GTCATTGTTTTGGAGCACAAGTTT 59.130 37.500 0.00 0.00 40.82 2.66
599 606 3.698539 TCTGTCATTGTTTTGGAGCACAA 59.301 39.130 0.00 0.00 37.31 3.33
604 611 5.520376 AAACCTCTGTCATTGTTTTGGAG 57.480 39.130 0.00 0.00 0.00 3.86
610 617 3.826729 GCCCTAAAACCTCTGTCATTGTT 59.173 43.478 0.00 0.00 0.00 2.83
611 618 3.181434 TGCCCTAAAACCTCTGTCATTGT 60.181 43.478 0.00 0.00 0.00 2.71
618 625 3.955471 TGAAGATGCCCTAAAACCTCTG 58.045 45.455 0.00 0.00 0.00 3.35
625 632 3.806949 ACCTGTTGAAGATGCCCTAAA 57.193 42.857 0.00 0.00 0.00 1.85
626 633 3.181434 ACAACCTGTTGAAGATGCCCTAA 60.181 43.478 16.41 0.00 42.93 2.69
627 634 2.375174 ACAACCTGTTGAAGATGCCCTA 59.625 45.455 16.41 0.00 42.93 3.53
628 635 1.145738 ACAACCTGTTGAAGATGCCCT 59.854 47.619 16.41 0.00 42.93 5.19
629 636 1.620822 ACAACCTGTTGAAGATGCCC 58.379 50.000 16.41 0.00 42.93 5.36
630 637 3.758554 ACATACAACCTGTTGAAGATGCC 59.241 43.478 16.41 0.00 42.93 4.40
631 638 5.376854 AACATACAACCTGTTGAAGATGC 57.623 39.130 16.41 0.00 42.93 3.91
632 639 7.604164 AGACTAACATACAACCTGTTGAAGATG 59.396 37.037 16.41 16.04 42.93 2.90
633 640 7.680730 AGACTAACATACAACCTGTTGAAGAT 58.319 34.615 16.41 4.46 42.93 2.40
634 641 7.062749 AGACTAACATACAACCTGTTGAAGA 57.937 36.000 16.41 2.40 42.93 2.87
635 642 7.226720 ACAAGACTAACATACAACCTGTTGAAG 59.773 37.037 16.41 7.96 42.93 3.02
636 643 7.051623 ACAAGACTAACATACAACCTGTTGAA 58.948 34.615 16.41 0.00 42.93 2.69
637 644 6.588204 ACAAGACTAACATACAACCTGTTGA 58.412 36.000 16.41 1.48 42.93 3.18
638 645 6.861065 ACAAGACTAACATACAACCTGTTG 57.139 37.500 8.42 8.42 45.58 3.33
639 646 6.262273 CCAACAAGACTAACATACAACCTGTT 59.738 38.462 0.00 0.00 39.93 3.16
640 647 5.763204 CCAACAAGACTAACATACAACCTGT 59.237 40.000 0.00 0.00 0.00 4.00
641 648 5.763204 ACCAACAAGACTAACATACAACCTG 59.237 40.000 0.00 0.00 0.00 4.00
642 649 5.937111 ACCAACAAGACTAACATACAACCT 58.063 37.500 0.00 0.00 0.00 3.50
643 650 7.733402 TTACCAACAAGACTAACATACAACC 57.267 36.000 0.00 0.00 0.00 3.77
646 653 9.344772 ACATTTTACCAACAAGACTAACATACA 57.655 29.630 0.00 0.00 0.00 2.29
649 656 8.908903 TGAACATTTTACCAACAAGACTAACAT 58.091 29.630 0.00 0.00 0.00 2.71
650 657 8.282455 TGAACATTTTACCAACAAGACTAACA 57.718 30.769 0.00 0.00 0.00 2.41
651 658 9.180678 CATGAACATTTTACCAACAAGACTAAC 57.819 33.333 0.00 0.00 0.00 2.34
652 659 8.908903 ACATGAACATTTTACCAACAAGACTAA 58.091 29.630 0.00 0.00 0.00 2.24
653 660 8.458573 ACATGAACATTTTACCAACAAGACTA 57.541 30.769 0.00 0.00 0.00 2.59
654 661 7.068103 TGACATGAACATTTTACCAACAAGACT 59.932 33.333 0.00 0.00 0.00 3.24
655 662 7.199766 TGACATGAACATTTTACCAACAAGAC 58.800 34.615 0.00 0.00 0.00 3.01
656 663 7.340122 TGACATGAACATTTTACCAACAAGA 57.660 32.000 0.00 0.00 0.00 3.02
657 664 7.866898 TGATGACATGAACATTTTACCAACAAG 59.133 33.333 0.00 0.00 0.00 3.16
658 665 7.720442 TGATGACATGAACATTTTACCAACAA 58.280 30.769 0.00 0.00 0.00 2.83
659 666 7.282332 TGATGACATGAACATTTTACCAACA 57.718 32.000 0.00 0.00 0.00 3.33
660 667 7.116233 GGTTGATGACATGAACATTTTACCAAC 59.884 37.037 17.80 18.37 0.00 3.77
661 668 7.151308 GGTTGATGACATGAACATTTTACCAA 58.849 34.615 17.80 2.80 0.00 3.67
662 669 6.266330 TGGTTGATGACATGAACATTTTACCA 59.734 34.615 17.80 20.21 34.14 3.25
663 670 6.686630 TGGTTGATGACATGAACATTTTACC 58.313 36.000 17.80 12.58 0.00 2.85
664 671 7.651304 TGTTGGTTGATGACATGAACATTTTAC 59.349 33.333 17.80 9.07 0.00 2.01
665 672 7.720442 TGTTGGTTGATGACATGAACATTTTA 58.280 30.769 17.80 0.00 0.00 1.52
666 673 6.580788 TGTTGGTTGATGACATGAACATTTT 58.419 32.000 17.80 0.00 0.00 1.82
667 674 6.159299 TGTTGGTTGATGACATGAACATTT 57.841 33.333 17.80 0.00 0.00 2.32
668 675 5.787953 TGTTGGTTGATGACATGAACATT 57.212 34.783 17.80 0.00 0.00 2.71
669 676 5.775686 CTTGTTGGTTGATGACATGAACAT 58.224 37.500 17.80 4.71 0.00 2.71
670 677 4.499526 GCTTGTTGGTTGATGACATGAACA 60.500 41.667 17.80 1.55 0.00 3.18
671 678 3.983344 GCTTGTTGGTTGATGACATGAAC 59.017 43.478 9.06 9.06 0.00 3.18
672 679 3.890756 AGCTTGTTGGTTGATGACATGAA 59.109 39.130 0.00 0.00 0.00 2.57
673 680 3.489355 AGCTTGTTGGTTGATGACATGA 58.511 40.909 0.00 0.00 0.00 3.07
674 681 3.928727 AGCTTGTTGGTTGATGACATG 57.071 42.857 0.00 0.00 0.00 3.21
675 682 5.255687 TGATAGCTTGTTGGTTGATGACAT 58.744 37.500 0.00 0.00 0.00 3.06
676 683 4.650734 TGATAGCTTGTTGGTTGATGACA 58.349 39.130 0.00 0.00 0.00 3.58
677 684 5.824904 ATGATAGCTTGTTGGTTGATGAC 57.175 39.130 0.00 0.00 0.00 3.06
678 685 6.413892 TGTATGATAGCTTGTTGGTTGATGA 58.586 36.000 0.00 0.00 0.00 2.92
679 686 6.682423 TGTATGATAGCTTGTTGGTTGATG 57.318 37.500 0.00 0.00 0.00 3.07
680 687 6.886459 AGTTGTATGATAGCTTGTTGGTTGAT 59.114 34.615 0.00 0.00 0.00 2.57
681 688 6.237901 AGTTGTATGATAGCTTGTTGGTTGA 58.762 36.000 0.00 0.00 0.00 3.18
682 689 6.500684 AGTTGTATGATAGCTTGTTGGTTG 57.499 37.500 0.00 0.00 0.00 3.77
683 690 7.394816 AGTAGTTGTATGATAGCTTGTTGGTT 58.605 34.615 0.00 0.00 0.00 3.67
684 691 6.947464 AGTAGTTGTATGATAGCTTGTTGGT 58.053 36.000 0.00 0.00 0.00 3.67
685 692 6.480320 GGAGTAGTTGTATGATAGCTTGTTGG 59.520 42.308 0.00 0.00 0.00 3.77
686 693 7.041721 TGGAGTAGTTGTATGATAGCTTGTTG 58.958 38.462 0.00 0.00 0.00 3.33
687 694 7.182817 TGGAGTAGTTGTATGATAGCTTGTT 57.817 36.000 0.00 0.00 0.00 2.83
688 695 6.791867 TGGAGTAGTTGTATGATAGCTTGT 57.208 37.500 0.00 0.00 0.00 3.16
689 696 9.416794 CTATTGGAGTAGTTGTATGATAGCTTG 57.583 37.037 0.00 0.00 0.00 4.01
690 697 8.589338 CCTATTGGAGTAGTTGTATGATAGCTT 58.411 37.037 0.00 0.00 34.57 3.74
691 698 7.730784 ACCTATTGGAGTAGTTGTATGATAGCT 59.269 37.037 0.00 0.00 37.04 3.32
692 699 7.897864 ACCTATTGGAGTAGTTGTATGATAGC 58.102 38.462 0.00 0.00 37.04 2.97
693 700 9.698309 CAACCTATTGGAGTAGTTGTATGATAG 57.302 37.037 0.00 0.00 37.04 2.08
694 701 9.209048 ACAACCTATTGGAGTAGTTGTATGATA 57.791 33.333 5.11 0.00 40.42 2.15
695 702 8.090788 ACAACCTATTGGAGTAGTTGTATGAT 57.909 34.615 5.11 0.00 40.42 2.45
696 703 7.490657 ACAACCTATTGGAGTAGTTGTATGA 57.509 36.000 5.11 0.00 40.42 2.15
697 704 9.832445 AATACAACCTATTGGAGTAGTTGTATG 57.168 33.333 21.07 0.00 40.42 2.39
740 747 9.425248 AGAGCAATCCCATTTATTTTCTCATTA 57.575 29.630 0.00 0.00 0.00 1.90
741 748 8.315220 AGAGCAATCCCATTTATTTTCTCATT 57.685 30.769 0.00 0.00 0.00 2.57
742 749 7.783596 AGAGAGCAATCCCATTTATTTTCTCAT 59.216 33.333 0.00 0.00 32.27 2.90
743 750 7.121382 AGAGAGCAATCCCATTTATTTTCTCA 58.879 34.615 0.00 0.00 32.27 3.27
744 751 7.579761 AGAGAGCAATCCCATTTATTTTCTC 57.420 36.000 0.00 0.00 31.14 2.87
745 752 9.652114 AATAGAGAGCAATCCCATTTATTTTCT 57.348 29.630 0.00 0.00 0.00 2.52
748 755 8.864087 GGAAATAGAGAGCAATCCCATTTATTT 58.136 33.333 0.00 0.00 0.00 1.40
749 756 8.230306 AGGAAATAGAGAGCAATCCCATTTATT 58.770 33.333 0.00 0.00 0.00 1.40
750 757 7.763613 AGGAAATAGAGAGCAATCCCATTTAT 58.236 34.615 0.00 0.00 0.00 1.40
751 758 7.154191 AGGAAATAGAGAGCAATCCCATTTA 57.846 36.000 0.00 0.00 0.00 1.40
752 759 6.023334 AGGAAATAGAGAGCAATCCCATTT 57.977 37.500 0.00 0.00 0.00 2.32
753 760 5.659849 AGGAAATAGAGAGCAATCCCATT 57.340 39.130 0.00 0.00 0.00 3.16
754 761 5.383476 CAAGGAAATAGAGAGCAATCCCAT 58.617 41.667 0.00 0.00 0.00 4.00
755 762 4.385643 CCAAGGAAATAGAGAGCAATCCCA 60.386 45.833 0.00 0.00 0.00 4.37
756 763 4.140536 CCAAGGAAATAGAGAGCAATCCC 58.859 47.826 0.00 0.00 0.00 3.85
757 764 4.578105 CACCAAGGAAATAGAGAGCAATCC 59.422 45.833 0.00 0.00 0.00 3.01
758 765 4.036144 GCACCAAGGAAATAGAGAGCAATC 59.964 45.833 0.00 0.00 0.00 2.67
759 766 3.950395 GCACCAAGGAAATAGAGAGCAAT 59.050 43.478 0.00 0.00 0.00 3.56
760 767 3.009473 AGCACCAAGGAAATAGAGAGCAA 59.991 43.478 0.00 0.00 0.00 3.91
761 768 2.573462 AGCACCAAGGAAATAGAGAGCA 59.427 45.455 0.00 0.00 0.00 4.26
762 769 3.274095 AGCACCAAGGAAATAGAGAGC 57.726 47.619 0.00 0.00 0.00 4.09
763 770 4.394300 CACAAGCACCAAGGAAATAGAGAG 59.606 45.833 0.00 0.00 0.00 3.20
764 771 4.326826 CACAAGCACCAAGGAAATAGAGA 58.673 43.478 0.00 0.00 0.00 3.10
765 772 3.119708 GCACAAGCACCAAGGAAATAGAG 60.120 47.826 0.00 0.00 41.58 2.43
766 773 2.819608 GCACAAGCACCAAGGAAATAGA 59.180 45.455 0.00 0.00 41.58 1.98
767 774 3.221964 GCACAAGCACCAAGGAAATAG 57.778 47.619 0.00 0.00 41.58 1.73
780 787 1.289276 CCAACAACCTTTGCACAAGC 58.711 50.000 0.00 0.00 42.57 4.01
781 788 2.671130 ACCAACAACCTTTGCACAAG 57.329 45.000 0.00 0.00 0.00 3.16
782 789 4.537135 TTAACCAACAACCTTTGCACAA 57.463 36.364 0.00 0.00 0.00 3.33
783 790 4.404073 AGATTAACCAACAACCTTTGCACA 59.596 37.500 0.00 0.00 0.00 4.57
784 791 4.944048 AGATTAACCAACAACCTTTGCAC 58.056 39.130 0.00 0.00 0.00 4.57
785 792 5.594725 TGTAGATTAACCAACAACCTTTGCA 59.405 36.000 0.00 0.00 0.00 4.08
786 793 6.079424 TGTAGATTAACCAACAACCTTTGC 57.921 37.500 0.00 0.00 0.00 3.68
787 794 8.788806 TGTATGTAGATTAACCAACAACCTTTG 58.211 33.333 0.00 0.00 0.00 2.77
788 795 8.927675 TGTATGTAGATTAACCAACAACCTTT 57.072 30.769 0.00 0.00 0.00 3.11
789 796 8.789762 GTTGTATGTAGATTAACCAACAACCTT 58.210 33.333 0.00 0.00 37.67 3.50
790 797 8.161425 AGTTGTATGTAGATTAACCAACAACCT 58.839 33.333 10.42 0.00 40.88 3.50
791 798 8.331730 AGTTGTATGTAGATTAACCAACAACC 57.668 34.615 10.42 0.00 40.88 3.77
794 801 8.293867 GCAAAGTTGTATGTAGATTAACCAACA 58.706 33.333 0.00 0.00 0.00 3.33
795 802 8.512138 AGCAAAGTTGTATGTAGATTAACCAAC 58.488 33.333 0.00 0.00 0.00 3.77
796 803 8.630054 AGCAAAGTTGTATGTAGATTAACCAA 57.370 30.769 0.00 0.00 0.00 3.67
797 804 8.100791 AGAGCAAAGTTGTATGTAGATTAACCA 58.899 33.333 0.00 0.00 0.00 3.67
798 805 8.494016 AGAGCAAAGTTGTATGTAGATTAACC 57.506 34.615 0.00 0.00 0.00 2.85
799 806 9.372369 AGAGAGCAAAGTTGTATGTAGATTAAC 57.628 33.333 0.00 0.00 0.00 2.01
800 807 9.587772 GAGAGAGCAAAGTTGTATGTAGATTAA 57.412 33.333 0.00 0.00 0.00 1.40
801 808 8.972127 AGAGAGAGCAAAGTTGTATGTAGATTA 58.028 33.333 0.00 0.00 0.00 1.75
802 809 7.846066 AGAGAGAGCAAAGTTGTATGTAGATT 58.154 34.615 0.00 0.00 0.00 2.40
803 810 7.416964 AGAGAGAGCAAAGTTGTATGTAGAT 57.583 36.000 0.00 0.00 0.00 1.98
804 811 6.842437 AGAGAGAGCAAAGTTGTATGTAGA 57.158 37.500 0.00 0.00 0.00 2.59
805 812 7.062839 GTGAAGAGAGAGCAAAGTTGTATGTAG 59.937 40.741 0.00 0.00 0.00 2.74
806 813 6.868864 GTGAAGAGAGAGCAAAGTTGTATGTA 59.131 38.462 0.00 0.00 0.00 2.29
807 814 5.698545 GTGAAGAGAGAGCAAAGTTGTATGT 59.301 40.000 0.00 0.00 0.00 2.29
808 815 5.698089 TGTGAAGAGAGAGCAAAGTTGTATG 59.302 40.000 0.00 0.00 0.00 2.39
809 816 5.858381 TGTGAAGAGAGAGCAAAGTTGTAT 58.142 37.500 0.00 0.00 0.00 2.29
810 817 5.276461 TGTGAAGAGAGAGCAAAGTTGTA 57.724 39.130 0.00 0.00 0.00 2.41
811 818 4.142609 TGTGAAGAGAGAGCAAAGTTGT 57.857 40.909 0.00 0.00 0.00 3.32
812 819 5.686159 AATGTGAAGAGAGAGCAAAGTTG 57.314 39.130 0.00 0.00 0.00 3.16
813 820 7.992754 ATAAATGTGAAGAGAGAGCAAAGTT 57.007 32.000 0.00 0.00 0.00 2.66
814 821 7.992754 AATAAATGTGAAGAGAGAGCAAAGT 57.007 32.000 0.00 0.00 0.00 2.66
815 822 8.939929 TGTAATAAATGTGAAGAGAGAGCAAAG 58.060 33.333 0.00 0.00 0.00 2.77
816 823 8.846943 TGTAATAAATGTGAAGAGAGAGCAAA 57.153 30.769 0.00 0.00 0.00 3.68
817 824 8.886719 CATGTAATAAATGTGAAGAGAGAGCAA 58.113 33.333 0.00 0.00 0.00 3.91
818 825 7.011763 GCATGTAATAAATGTGAAGAGAGAGCA 59.988 37.037 0.00 0.00 0.00 4.26
819 826 7.351223 GCATGTAATAAATGTGAAGAGAGAGC 58.649 38.462 0.00 0.00 0.00 4.09
820 827 7.496920 TGGCATGTAATAAATGTGAAGAGAGAG 59.503 37.037 0.00 0.00 0.00 3.20
821 828 7.280876 GTGGCATGTAATAAATGTGAAGAGAGA 59.719 37.037 0.00 0.00 0.00 3.10
822 829 7.066163 TGTGGCATGTAATAAATGTGAAGAGAG 59.934 37.037 0.00 0.00 0.00 3.20
823 830 6.883756 TGTGGCATGTAATAAATGTGAAGAGA 59.116 34.615 0.00 0.00 0.00 3.10
824 831 7.087409 TGTGGCATGTAATAAATGTGAAGAG 57.913 36.000 0.00 0.00 0.00 2.85
825 832 7.338957 TGATGTGGCATGTAATAAATGTGAAGA 59.661 33.333 0.00 0.00 0.00 2.87
826 833 7.482474 TGATGTGGCATGTAATAAATGTGAAG 58.518 34.615 0.00 0.00 0.00 3.02
827 834 7.401955 TGATGTGGCATGTAATAAATGTGAA 57.598 32.000 0.00 0.00 0.00 3.18
828 835 7.284944 TGATGATGTGGCATGTAATAAATGTGA 59.715 33.333 0.00 0.00 0.00 3.58
829 836 7.380333 GTGATGATGTGGCATGTAATAAATGTG 59.620 37.037 0.00 0.00 0.00 3.21
830 837 7.286087 AGTGATGATGTGGCATGTAATAAATGT 59.714 33.333 0.00 0.00 0.00 2.71
831 838 7.654568 AGTGATGATGTGGCATGTAATAAATG 58.345 34.615 0.00 0.00 0.00 2.32
832 839 7.828508 AGTGATGATGTGGCATGTAATAAAT 57.171 32.000 0.00 0.00 0.00 1.40
833 840 8.785946 CATAGTGATGATGTGGCATGTAATAAA 58.214 33.333 0.00 0.00 34.73 1.40
834 841 7.938490 ACATAGTGATGATGTGGCATGTAATAA 59.062 33.333 0.00 0.00 36.18 1.40
835 842 7.452562 ACATAGTGATGATGTGGCATGTAATA 58.547 34.615 0.00 0.00 36.18 0.98
836 843 6.301486 ACATAGTGATGATGTGGCATGTAAT 58.699 36.000 0.00 0.00 36.18 1.89
837 844 5.683681 ACATAGTGATGATGTGGCATGTAA 58.316 37.500 0.00 0.00 36.18 2.41
838 845 5.294734 ACATAGTGATGATGTGGCATGTA 57.705 39.130 0.00 0.00 36.18 2.29
839 846 4.132336 GACATAGTGATGATGTGGCATGT 58.868 43.478 0.00 0.00 37.65 3.21
840 847 3.501062 GGACATAGTGATGATGTGGCATG 59.499 47.826 0.00 0.00 37.65 4.06
841 848 3.393609 AGGACATAGTGATGATGTGGCAT 59.606 43.478 0.00 0.00 37.65 4.40
842 849 2.773661 AGGACATAGTGATGATGTGGCA 59.226 45.455 0.00 0.00 37.65 4.92
843 850 3.482156 AGGACATAGTGATGATGTGGC 57.518 47.619 0.00 0.00 37.65 5.01
844 851 6.396450 CATCTAGGACATAGTGATGATGTGG 58.604 44.000 0.00 0.00 37.65 4.17
845 852 6.396450 CCATCTAGGACATAGTGATGATGTG 58.604 44.000 0.00 0.00 41.22 3.21
846 853 5.046735 GCCATCTAGGACATAGTGATGATGT 60.047 44.000 0.00 0.00 41.22 3.06
847 854 5.046807 TGCCATCTAGGACATAGTGATGATG 60.047 44.000 0.00 0.00 41.22 3.07
848 855 5.089434 TGCCATCTAGGACATAGTGATGAT 58.911 41.667 0.00 0.00 41.22 2.45
849 856 4.482990 TGCCATCTAGGACATAGTGATGA 58.517 43.478 0.00 0.00 41.22 2.92
850 857 4.879197 TGCCATCTAGGACATAGTGATG 57.121 45.455 0.00 0.00 41.22 3.07
851 858 5.894298 TTTGCCATCTAGGACATAGTGAT 57.106 39.130 0.00 0.00 41.22 3.06
852 859 5.894298 ATTTGCCATCTAGGACATAGTGA 57.106 39.130 0.00 0.00 41.22 3.41
853 860 6.949352 AAATTTGCCATCTAGGACATAGTG 57.051 37.500 0.00 0.00 41.22 2.74
854 861 6.998673 GGTAAATTTGCCATCTAGGACATAGT 59.001 38.462 19.26 0.00 41.22 2.12
855 862 6.998074 TGGTAAATTTGCCATCTAGGACATAG 59.002 38.462 22.45 0.00 38.05 2.23
856 863 6.905736 TGGTAAATTTGCCATCTAGGACATA 58.094 36.000 22.45 0.00 38.05 2.29
857 864 5.765510 TGGTAAATTTGCCATCTAGGACAT 58.234 37.500 22.45 0.00 38.05 3.06
858 865 5.186256 TGGTAAATTTGCCATCTAGGACA 57.814 39.130 22.45 0.00 38.05 4.02
859 866 5.417580 TGTTGGTAAATTTGCCATCTAGGAC 59.582 40.000 25.98 19.80 42.60 3.85
860 867 5.417580 GTGTTGGTAAATTTGCCATCTAGGA 59.582 40.000 25.98 9.59 42.60 2.94
861 868 5.394115 GGTGTTGGTAAATTTGCCATCTAGG 60.394 44.000 25.98 0.00 42.60 3.02
862 869 5.418840 AGGTGTTGGTAAATTTGCCATCTAG 59.581 40.000 25.98 0.00 42.60 2.43
863 870 5.329399 AGGTGTTGGTAAATTTGCCATCTA 58.671 37.500 25.98 10.99 42.60 1.98
864 871 4.159557 AGGTGTTGGTAAATTTGCCATCT 58.840 39.130 25.98 17.79 42.60 2.90
865 872 4.535526 AGGTGTTGGTAAATTTGCCATC 57.464 40.909 25.98 24.05 42.60 3.51
866 873 6.619329 AATAGGTGTTGGTAAATTTGCCAT 57.381 33.333 25.98 14.65 42.60 4.40
867 874 6.426646 AAATAGGTGTTGGTAAATTTGCCA 57.573 33.333 22.45 22.45 41.35 4.92
882 889 9.683069 GCATCTCCAACAATTATAAAATAGGTG 57.317 33.333 0.00 0.00 0.00 4.00
883 890 8.860088 GGCATCTCCAACAATTATAAAATAGGT 58.140 33.333 0.00 0.00 34.01 3.08
884 891 8.306761 GGGCATCTCCAACAATTATAAAATAGG 58.693 37.037 0.00 0.00 36.21 2.57
885 892 8.859090 TGGGCATCTCCAACAATTATAAAATAG 58.141 33.333 0.00 0.00 36.21 1.73
886 893 8.774546 TGGGCATCTCCAACAATTATAAAATA 57.225 30.769 0.00 0.00 36.21 1.40
887 894 7.673641 TGGGCATCTCCAACAATTATAAAAT 57.326 32.000 0.00 0.00 36.21 1.82
888 895 7.673641 ATGGGCATCTCCAACAATTATAAAA 57.326 32.000 0.00 0.00 40.62 1.52
889 896 8.954834 ATATGGGCATCTCCAACAATTATAAA 57.045 30.769 0.00 0.00 40.62 1.40
892 899 8.974238 CATTATATGGGCATCTCCAACAATTAT 58.026 33.333 0.00 0.00 40.62 1.28
893 900 7.093814 GCATTATATGGGCATCTCCAACAATTA 60.094 37.037 0.00 0.00 40.62 1.40
894 901 6.295462 GCATTATATGGGCATCTCCAACAATT 60.295 38.462 0.00 0.00 40.62 2.32
895 902 5.186409 GCATTATATGGGCATCTCCAACAAT 59.814 40.000 0.00 0.00 40.62 2.71
896 903 4.523943 GCATTATATGGGCATCTCCAACAA 59.476 41.667 0.00 0.00 40.62 2.83
897 904 4.081406 GCATTATATGGGCATCTCCAACA 58.919 43.478 0.00 0.00 40.62 3.33
898 905 4.338879 AGCATTATATGGGCATCTCCAAC 58.661 43.478 0.00 0.00 40.62 3.77
899 906 4.662966 AGCATTATATGGGCATCTCCAA 57.337 40.909 0.00 0.00 40.62 3.53
900 907 4.202599 ACAAGCATTATATGGGCATCTCCA 60.203 41.667 0.00 0.00 41.60 3.86
901 908 4.157289 CACAAGCATTATATGGGCATCTCC 59.843 45.833 0.00 0.00 0.00 3.71
902 909 4.763793 ACACAAGCATTATATGGGCATCTC 59.236 41.667 0.00 0.00 0.00 2.75
903 910 4.733165 ACACAAGCATTATATGGGCATCT 58.267 39.130 0.00 0.00 0.00 2.90
904 911 5.009911 TGAACACAAGCATTATATGGGCATC 59.990 40.000 0.00 0.00 0.00 3.91
905 912 4.894705 TGAACACAAGCATTATATGGGCAT 59.105 37.500 0.00 0.00 0.00 4.40
906 913 4.097741 GTGAACACAAGCATTATATGGGCA 59.902 41.667 0.00 0.00 0.00 5.36
907 914 4.339247 AGTGAACACAAGCATTATATGGGC 59.661 41.667 7.68 0.00 0.00 5.36
908 915 5.734220 GCAGTGAACACAAGCATTATATGGG 60.734 44.000 14.15 0.00 35.58 4.00
909 916 5.276270 GCAGTGAACACAAGCATTATATGG 58.724 41.667 14.15 0.00 35.58 2.74
910 917 5.163632 TGGCAGTGAACACAAGCATTATATG 60.164 40.000 18.37 3.19 36.67 1.78
911 918 4.949238 TGGCAGTGAACACAAGCATTATAT 59.051 37.500 18.37 0.00 36.67 0.86
946 953 5.597182 AGTACTTCAGATTTATAGCCGTGGA 59.403 40.000 0.00 0.00 0.00 4.02
947 954 5.844004 AGTACTTCAGATTTATAGCCGTGG 58.156 41.667 0.00 0.00 0.00 4.94
949 956 7.820578 AGTAGTACTTCAGATTTATAGCCGT 57.179 36.000 0.00 0.00 0.00 5.68
950 957 8.235905 GGTAGTAGTACTTCAGATTTATAGCCG 58.764 40.741 8.40 0.00 0.00 5.52
951 958 9.299465 AGGTAGTAGTACTTCAGATTTATAGCC 57.701 37.037 8.40 0.00 0.00 3.93
956 963 8.890410 ACCAAGGTAGTAGTACTTCAGATTTA 57.110 34.615 8.40 0.00 0.00 1.40
983 993 4.100035 TCTCCATATTCTGCCTGTGTGTAG 59.900 45.833 0.00 0.00 0.00 2.74
984 994 4.030216 TCTCCATATTCTGCCTGTGTGTA 58.970 43.478 0.00 0.00 0.00 2.90
985 995 2.840038 TCTCCATATTCTGCCTGTGTGT 59.160 45.455 0.00 0.00 0.00 3.72
1020 1031 1.644786 CGTGCGACCATTTCCCTTCC 61.645 60.000 0.00 0.00 0.00 3.46
1212 1223 0.246086 GCTGATAGCTCTGGGGATCG 59.754 60.000 0.00 0.00 38.45 3.69
1297 1386 4.882842 ACAAAAGCAAATACCGGGAAAT 57.117 36.364 6.32 0.00 0.00 2.17
1316 1405 5.400188 CGAAAAATATACATCGCGGTCTACA 59.600 40.000 6.13 0.00 0.00 2.74
1323 1412 5.550076 CGTGTTACGAAAAATATACATCGCG 59.450 40.000 0.00 0.00 46.05 5.87
1608 1793 4.985409 GCTTGCAGCTAGTACTAATCGATT 59.015 41.667 16.15 16.15 38.45 3.34
1630 1819 4.331168 CACTTAGCCTCTATGTGTTTCTGC 59.669 45.833 10.11 0.00 0.00 4.26
1655 1844 6.192773 AGATGTAACAGGCTAACACCTAGTA 58.807 40.000 0.00 0.00 38.26 1.82
1656 1845 5.024118 AGATGTAACAGGCTAACACCTAGT 58.976 41.667 0.00 0.00 38.26 2.57
1657 1846 5.452077 GGAGATGTAACAGGCTAACACCTAG 60.452 48.000 0.00 0.00 38.26 3.02
1771 1963 4.989279 TCTCTTGCTTTATTGGCCATTC 57.011 40.909 6.09 0.00 0.00 2.67
2005 2207 7.692291 CGACAACATTTGTTCTCCATACAATAC 59.308 37.037 0.00 0.00 45.52 1.89
2013 2215 1.262950 CGCGACAACATTTGTTCTCCA 59.737 47.619 0.00 0.00 45.52 3.86
2108 2509 6.389906 CCAAATCACTATTGTTTTCCTGACC 58.610 40.000 0.00 0.00 0.00 4.02
2119 2520 7.951530 AGTTCTTTTTGCCAAATCACTATTG 57.048 32.000 0.00 0.00 0.00 1.90
2120 2521 9.077885 TCTAGTTCTTTTTGCCAAATCACTATT 57.922 29.630 0.00 0.00 0.00 1.73
2172 2598 9.002600 TGACATATATTTGCTGATGGTAATGAC 57.997 33.333 0.00 0.00 0.00 3.06
2213 2640 7.721399 AGACCTATTTATTTGCTCATGTAAGGG 59.279 37.037 0.00 0.00 0.00 3.95
2265 2692 1.398041 GCAGAGTGACATGCGCATTTA 59.602 47.619 22.81 7.05 31.87 1.40
2422 2852 4.042062 AGAACTGTGTCAGGAATTCCATGA 59.958 41.667 26.22 21.20 38.89 3.07
2462 2892 1.001406 CCTGAAGAAGTGCTCGAGGTT 59.999 52.381 15.58 0.00 0.00 3.50
2487 2917 5.392811 CCAAATCTGTTCTTCTCATCAAGGC 60.393 44.000 0.00 0.00 0.00 4.35
2491 2921 4.012374 GGCCAAATCTGTTCTTCTCATCA 58.988 43.478 0.00 0.00 0.00 3.07
2623 3053 2.213499 GTAGGGCATGGTCTCATTTCG 58.787 52.381 0.00 0.00 0.00 3.46
2638 3068 1.270907 AGCTGACAGGAGTTGTAGGG 58.729 55.000 4.26 0.00 41.05 3.53
2874 3335 4.816925 CCTGACTCACATACGTATCTCTGA 59.183 45.833 4.74 6.08 0.00 3.27
2887 3349 1.351076 TCCTCAATGCCTGACTCACA 58.649 50.000 0.00 0.00 0.00 3.58
2930 3392 3.962718 CCCAAAACCTTATCATGAGCCAT 59.037 43.478 0.09 0.00 0.00 4.40
3105 3567 1.067974 CAACGGGTGCATAGATCGGTA 59.932 52.381 0.00 0.00 0.00 4.02
3106 3568 0.179084 CAACGGGTGCATAGATCGGT 60.179 55.000 0.00 0.00 0.00 4.69
3107 3569 0.104120 TCAACGGGTGCATAGATCGG 59.896 55.000 0.00 0.00 0.00 4.18
3187 3652 4.870426 TGGCATTTTAGTCTTCACGATCTC 59.130 41.667 0.00 0.00 0.00 2.75
3214 3679 5.104900 TGGGGACTTCTTTATTAGAGTGAGC 60.105 44.000 0.00 0.00 33.51 4.26
3324 3789 2.725221 AATGGACATCCTCTCCTTGC 57.275 50.000 0.00 0.00 36.82 4.01
3445 3910 4.894784 TGATCGAGAAAACAACCTTAGCT 58.105 39.130 0.00 0.00 0.00 3.32
3465 3930 3.463944 GTTTTCTTCCCGTCAAGTCTGA 58.536 45.455 0.00 0.00 0.00 3.27
3468 3933 2.567985 TGGTTTTCTTCCCGTCAAGTC 58.432 47.619 0.00 0.00 0.00 3.01
3478 3943 4.079253 TGGCATAGTCCTTGGTTTTCTTC 58.921 43.478 0.00 0.00 0.00 2.87
3558 4023 9.557061 GGGCCTATATACTTTATTATAGCAACC 57.443 37.037 0.84 0.00 0.00 3.77
3808 4274 0.036577 CTGGACTGCCACTTCTCCAG 60.037 60.000 0.00 0.00 42.97 3.86
3813 4279 0.886490 CACCACTGGACTGCCACTTC 60.886 60.000 0.71 0.00 39.92 3.01
3822 4288 1.152756 AGGGTTTGCACCACTGGAC 60.153 57.895 0.71 0.00 46.43 4.02
3837 4303 2.290896 TGGCCTTCTTAACATGTCAGGG 60.291 50.000 3.32 0.00 0.00 4.45
3872 4338 5.855740 AATACTCTGCCCTGTAACTACTC 57.144 43.478 0.00 0.00 0.00 2.59
3933 4399 8.173321 CAAGCCATGCAGTTAACTTTATTTAC 57.827 34.615 5.07 0.00 0.00 2.01
3950 4416 3.544684 TCAGTATTACTGGCAAGCCATG 58.455 45.455 20.83 11.08 45.94 3.66
3951 4417 3.931907 TCAGTATTACTGGCAAGCCAT 57.068 42.857 20.83 7.64 45.94 4.40
3958 4424 4.351874 TGGCCTAATCAGTATTACTGGC 57.648 45.455 20.83 16.07 45.94 4.85
3965 4431 7.013655 GTCAAAATCACATGGCCTAATCAGTAT 59.986 37.037 3.32 0.00 0.00 2.12
3974 4440 4.344679 TCAAAAGTCAAAATCACATGGCCT 59.655 37.500 3.32 0.00 0.00 5.19
4081 4547 3.688159 GCACCTTTGGGCTGCCAG 61.688 66.667 22.05 9.33 35.28 4.85
4084 4550 2.999063 ATGGCACCTTTGGGCTGC 60.999 61.111 0.00 0.00 38.22 5.25
4122 4588 2.489329 GCATTGTTCTAGGTGCATGTGT 59.511 45.455 0.00 0.00 37.52 3.72
4140 4606 6.933521 AGATTAGATTTTATCTGCTGTCGCAT 59.066 34.615 0.00 0.00 46.74 4.73
4141 4607 6.283694 AGATTAGATTTTATCTGCTGTCGCA 58.716 36.000 0.00 0.00 45.60 5.10
4142 4608 6.777526 AGATTAGATTTTATCTGCTGTCGC 57.222 37.500 0.00 0.00 40.51 5.19
4143 4609 9.469807 AACTAGATTAGATTTTATCTGCTGTCG 57.530 33.333 0.00 0.00 40.51 4.35
4145 4611 9.050601 GCAACTAGATTAGATTTTATCTGCTGT 57.949 33.333 0.00 0.00 40.51 4.40
4146 4612 9.270640 AGCAACTAGATTAGATTTTATCTGCTG 57.729 33.333 0.00 0.00 40.51 4.41
4299 4765 1.614317 CCCAGGAAAGTGCCTTCGAAT 60.614 52.381 0.00 0.00 35.66 3.34
4395 4861 7.389803 TCATATCATTTTGTCAACCGTTCAT 57.610 32.000 0.00 0.00 0.00 2.57
4446 4912 6.432581 AGAGTACATATGAACTCCACCACTA 58.567 40.000 10.38 0.00 42.56 2.74
4448 4914 5.599999 AGAGTACATATGAACTCCACCAC 57.400 43.478 10.38 0.00 42.56 4.16
4450 4916 6.963083 AGTAGAGTACATATGAACTCCACC 57.037 41.667 10.38 0.00 42.56 4.61
4466 4932 2.572104 GTTGGGGGTCATCAAGTAGAGT 59.428 50.000 0.00 0.00 0.00 3.24
4473 4939 0.112218 CTGGTGTTGGGGGTCATCAA 59.888 55.000 0.00 0.00 0.00 2.57
4478 4944 1.228459 GGTTCTGGTGTTGGGGGTC 60.228 63.158 0.00 0.00 0.00 4.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.