Multiple sequence alignment - TraesCS4D01G330200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G330200 chr4D 100.000 4379 0 0 1 4379 488500624 488496246 0.000000e+00 8087.0
1 TraesCS4D01G330200 chr4D 93.506 154 7 3 160 312 93338212 93338061 4.410000e-55 226.0
2 TraesCS4D01G330200 chr5A 93.575 3891 169 41 496 4346 670255014 670251165 0.000000e+00 5725.0
3 TraesCS4D01G330200 chr5A 94.149 188 11 0 312 499 670255405 670255218 1.990000e-73 287.0
4 TraesCS4D01G330200 chr5A 88.690 168 14 2 1 168 670272048 670271886 2.670000e-47 200.0
5 TraesCS4D01G330200 chr4B 93.771 3628 135 38 791 4354 625122539 625118939 0.000000e+00 5363.0
6 TraesCS4D01G330200 chr4B 82.888 187 20 4 313 499 625124884 625124710 1.630000e-34 158.0
7 TraesCS4D01G330200 chr4B 100.000 31 0 0 4349 4379 625118932 625118902 1.700000e-04 58.4
8 TraesCS4D01G330200 chr1D 95.205 146 7 0 167 312 11354616 11354761 9.470000e-57 231.0
9 TraesCS4D01G330200 chr1D 94.521 146 8 0 167 312 411982270 411982125 4.410000e-55 226.0
10 TraesCS4D01G330200 chr7D 94.521 146 8 0 167 312 207459325 207459180 4.410000e-55 226.0
11 TraesCS4D01G330200 chr7B 94.000 150 7 2 164 312 714316109 714315961 4.410000e-55 226.0
12 TraesCS4D01G330200 chr6D 94.521 146 8 0 167 312 389700705 389700560 4.410000e-55 226.0
13 TraesCS4D01G330200 chr5B 93.960 149 9 0 164 312 224391509 224391657 4.410000e-55 226.0
14 TraesCS4D01G330200 chr3A 94.000 150 7 2 164 312 585605635 585605783 4.410000e-55 226.0
15 TraesCS4D01G330200 chr2D 93.960 149 9 0 164 312 418285010 418284862 4.410000e-55 226.0
16 TraesCS4D01G330200 chr7A 80.620 129 15 5 1504 1622 594467325 594467197 1.680000e-14 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G330200 chr4D 488496246 488500624 4378 True 8087.0 8087 100.000000 1 4379 1 chr4D.!!$R2 4378
1 TraesCS4D01G330200 chr5A 670251165 670255405 4240 True 3006.0 5725 93.862000 312 4346 2 chr5A.!!$R2 4034
2 TraesCS4D01G330200 chr4B 625118902 625124884 5982 True 1859.8 5363 92.219667 313 4379 3 chr4B.!!$R1 4066

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
58 59 0.035317 ACTGAATGACTTCGCTGCCA 59.965 50.000 0.00 0.0 33.86 4.92 F
84 85 0.036010 CCGGTGTCTCTGGATTTGCT 60.036 55.000 0.00 0.0 45.09 3.91 F
177 178 0.182061 TAGCGATGTACTCCCTCCGT 59.818 55.000 0.00 0.0 0.00 4.69 F
179 180 0.248949 GCGATGTACTCCCTCCGTTC 60.249 60.000 0.00 0.0 0.00 3.95 F
718 2698 0.314935 ATTCACCAAGCGGCAAACAG 59.685 50.000 1.45 0.0 34.57 3.16 F
921 2944 1.128692 GTTACGACAGTGCAATCCAGC 59.871 52.381 0.00 0.0 0.00 4.85 F
2508 4535 1.003233 GGGGAGAACTGCACTGGAC 60.003 63.158 0.00 0.0 0.00 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1827 3854 0.034896 ATGTCACCACGGTCCTCAAC 59.965 55.000 0.00 0.00 0.00 3.18 R
1938 3965 1.262417 TGATAGCGGTGACCACTTCA 58.738 50.000 1.11 1.69 0.00 3.02 R
1965 3992 2.253452 GTTTGAGCACAGGCAGCG 59.747 61.111 0.00 0.00 44.61 5.18 R
2109 4136 4.935808 GTCGTCATCTGTCCAAATACCTTT 59.064 41.667 0.00 0.00 0.00 3.11 R
2427 4454 0.394762 TGACATCCTTGCCTGCCATC 60.395 55.000 0.00 0.00 0.00 3.51 R
2855 4882 1.593196 ACCTGTGTTGTCATGTTCCG 58.407 50.000 0.00 0.00 0.00 4.30 R
3623 5659 0.107945 ACAAGCCCTGCTCTTCGATC 60.108 55.000 0.00 0.00 38.25 3.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 3.261441 GGAACGTTGCCGATATCGA 57.739 52.632 26.32 4.40 43.02 3.59
33 34 1.129326 GGAACGTTGCCGATATCGAG 58.871 55.000 26.32 16.48 43.02 4.04
34 35 0.503117 GAACGTTGCCGATATCGAGC 59.497 55.000 26.32 24.58 43.02 5.03
35 36 1.206745 AACGTTGCCGATATCGAGCG 61.207 55.000 26.32 21.14 43.02 5.03
36 37 2.846918 GTTGCCGATATCGAGCGC 59.153 61.111 26.32 20.15 43.02 5.92
37 38 2.729491 TTGCCGATATCGAGCGCG 60.729 61.111 26.32 2.41 43.02 6.86
38 39 3.478724 TTGCCGATATCGAGCGCGT 62.479 57.895 26.32 0.00 43.02 6.01
39 40 2.120355 TTGCCGATATCGAGCGCGTA 62.120 55.000 26.32 10.30 43.02 4.42
40 41 2.144680 GCCGATATCGAGCGCGTAC 61.145 63.158 26.32 0.70 43.02 3.67
41 42 1.496393 CCGATATCGAGCGCGTACT 59.504 57.895 26.32 0.00 43.02 2.73
42 43 0.789753 CCGATATCGAGCGCGTACTG 60.790 60.000 26.32 1.54 43.02 2.74
43 44 0.163146 CGATATCGAGCGCGTACTGA 59.837 55.000 20.50 0.95 43.02 3.41
44 45 1.398071 CGATATCGAGCGCGTACTGAA 60.398 52.381 20.50 0.00 43.02 3.02
45 46 2.725145 CGATATCGAGCGCGTACTGAAT 60.725 50.000 20.50 0.00 43.02 2.57
46 47 2.032414 TATCGAGCGCGTACTGAATG 57.968 50.000 10.30 0.00 38.98 2.67
47 48 0.380733 ATCGAGCGCGTACTGAATGA 59.619 50.000 10.30 0.00 38.98 2.57
48 49 0.522705 TCGAGCGCGTACTGAATGAC 60.523 55.000 10.30 0.00 38.98 3.06
49 50 0.523546 CGAGCGCGTACTGAATGACT 60.524 55.000 8.43 0.00 0.00 3.41
50 51 1.630148 GAGCGCGTACTGAATGACTT 58.370 50.000 8.43 0.00 0.00 3.01
51 52 1.584308 GAGCGCGTACTGAATGACTTC 59.416 52.381 8.43 0.00 0.00 3.01
52 53 0.294887 GCGCGTACTGAATGACTTCG 59.705 55.000 8.43 0.00 33.86 3.79
53 54 0.294887 CGCGTACTGAATGACTTCGC 59.705 55.000 0.00 0.00 39.03 4.70
54 55 1.630148 GCGTACTGAATGACTTCGCT 58.370 50.000 0.00 0.00 39.26 4.93
55 56 1.321743 GCGTACTGAATGACTTCGCTG 59.678 52.381 0.00 0.00 39.26 5.18
56 57 1.321743 CGTACTGAATGACTTCGCTGC 59.678 52.381 0.00 0.00 33.86 5.25
57 58 1.661112 GTACTGAATGACTTCGCTGCC 59.339 52.381 0.00 0.00 33.86 4.85
58 59 0.035317 ACTGAATGACTTCGCTGCCA 59.965 50.000 0.00 0.00 33.86 4.92
59 60 0.725686 CTGAATGACTTCGCTGCCAG 59.274 55.000 0.00 0.00 33.86 4.85
60 61 0.674581 TGAATGACTTCGCTGCCAGG 60.675 55.000 0.00 0.00 33.86 4.45
61 62 0.391661 GAATGACTTCGCTGCCAGGA 60.392 55.000 0.00 0.00 0.00 3.86
62 63 0.036732 AATGACTTCGCTGCCAGGAA 59.963 50.000 0.00 0.00 0.00 3.36
63 64 0.254178 ATGACTTCGCTGCCAGGAAT 59.746 50.000 0.00 0.00 0.00 3.01
64 65 0.036732 TGACTTCGCTGCCAGGAATT 59.963 50.000 0.00 0.00 0.00 2.17
65 66 0.729690 GACTTCGCTGCCAGGAATTC 59.270 55.000 0.00 0.00 0.00 2.17
66 67 0.678048 ACTTCGCTGCCAGGAATTCC 60.678 55.000 17.31 17.31 0.00 3.01
67 68 1.709147 CTTCGCTGCCAGGAATTCCG 61.709 60.000 18.82 13.17 42.08 4.30
68 69 3.204827 CGCTGCCAGGAATTCCGG 61.205 66.667 23.24 23.24 42.08 5.14
69 70 2.044946 GCTGCCAGGAATTCCGGT 60.045 61.111 26.02 8.48 42.08 5.28
70 71 2.409870 GCTGCCAGGAATTCCGGTG 61.410 63.158 26.02 21.25 42.08 4.94
71 72 1.002134 CTGCCAGGAATTCCGGTGT 60.002 57.895 26.02 7.51 42.08 4.16
72 73 1.002624 TGCCAGGAATTCCGGTGTC 60.003 57.895 26.02 15.34 42.08 3.67
73 74 1.299976 GCCAGGAATTCCGGTGTCT 59.700 57.895 26.02 6.55 42.08 3.41
74 75 0.744771 GCCAGGAATTCCGGTGTCTC 60.745 60.000 26.02 12.63 42.08 3.36
75 76 0.905357 CCAGGAATTCCGGTGTCTCT 59.095 55.000 21.21 0.00 42.08 3.10
76 77 1.406069 CCAGGAATTCCGGTGTCTCTG 60.406 57.143 21.21 10.74 42.08 3.35
77 78 0.905357 AGGAATTCCGGTGTCTCTGG 59.095 55.000 18.82 0.00 43.70 3.86
83 84 0.036388 TCCGGTGTCTCTGGATTTGC 60.036 55.000 0.00 0.00 45.77 3.68
84 85 0.036010 CCGGTGTCTCTGGATTTGCT 60.036 55.000 0.00 0.00 45.09 3.91
85 86 1.611673 CCGGTGTCTCTGGATTTGCTT 60.612 52.381 0.00 0.00 45.09 3.91
86 87 1.734465 CGGTGTCTCTGGATTTGCTTC 59.266 52.381 0.00 0.00 0.00 3.86
87 88 1.734465 GGTGTCTCTGGATTTGCTTCG 59.266 52.381 0.00 0.00 0.00 3.79
88 89 2.612972 GGTGTCTCTGGATTTGCTTCGA 60.613 50.000 0.00 0.00 0.00 3.71
89 90 2.413453 GTGTCTCTGGATTTGCTTCGAC 59.587 50.000 0.00 0.00 0.00 4.20
90 91 2.300152 TGTCTCTGGATTTGCTTCGACT 59.700 45.455 0.00 0.00 0.00 4.18
91 92 3.244215 TGTCTCTGGATTTGCTTCGACTT 60.244 43.478 0.00 0.00 0.00 3.01
92 93 3.369451 GTCTCTGGATTTGCTTCGACTTC 59.631 47.826 0.00 0.00 0.00 3.01
93 94 2.337583 TCTGGATTTGCTTCGACTTCG 58.662 47.619 0.00 0.00 41.45 3.79
94 95 1.394917 CTGGATTTGCTTCGACTTCGG 59.605 52.381 0.00 0.00 40.29 4.30
95 96 1.270625 TGGATTTGCTTCGACTTCGGT 60.271 47.619 0.00 0.00 40.29 4.69
96 97 2.028839 TGGATTTGCTTCGACTTCGGTA 60.029 45.455 0.00 0.00 40.29 4.02
97 98 2.997986 GGATTTGCTTCGACTTCGGTAA 59.002 45.455 0.00 0.00 40.29 2.85
98 99 3.621715 GGATTTGCTTCGACTTCGGTAAT 59.378 43.478 0.00 0.00 40.29 1.89
99 100 4.094442 GGATTTGCTTCGACTTCGGTAATT 59.906 41.667 0.00 0.00 40.29 1.40
100 101 5.292589 GGATTTGCTTCGACTTCGGTAATTA 59.707 40.000 0.00 0.00 40.29 1.40
101 102 6.183360 GGATTTGCTTCGACTTCGGTAATTAA 60.183 38.462 0.00 0.00 40.29 1.40
102 103 6.730960 TTTGCTTCGACTTCGGTAATTAAT 57.269 33.333 0.00 0.00 40.29 1.40
103 104 5.712217 TGCTTCGACTTCGGTAATTAATG 57.288 39.130 0.00 0.00 40.29 1.90
104 105 5.172934 TGCTTCGACTTCGGTAATTAATGT 58.827 37.500 0.00 0.00 40.29 2.71
105 106 5.290158 TGCTTCGACTTCGGTAATTAATGTC 59.710 40.000 0.00 0.00 40.29 3.06
106 107 5.519206 GCTTCGACTTCGGTAATTAATGTCT 59.481 40.000 0.00 0.00 40.29 3.41
107 108 6.291690 GCTTCGACTTCGGTAATTAATGTCTC 60.292 42.308 0.00 0.00 40.29 3.36
108 109 5.268544 TCGACTTCGGTAATTAATGTCTCG 58.731 41.667 0.00 0.00 40.29 4.04
109 110 4.085721 CGACTTCGGTAATTAATGTCTCGC 60.086 45.833 0.00 0.00 35.37 5.03
110 111 5.007385 ACTTCGGTAATTAATGTCTCGCT 57.993 39.130 0.00 0.00 0.00 4.93
111 112 4.804139 ACTTCGGTAATTAATGTCTCGCTG 59.196 41.667 0.00 0.00 0.00 5.18
112 113 4.380841 TCGGTAATTAATGTCTCGCTGT 57.619 40.909 0.00 0.00 0.00 4.40
113 114 4.751060 TCGGTAATTAATGTCTCGCTGTT 58.249 39.130 0.00 0.00 0.00 3.16
114 115 4.802039 TCGGTAATTAATGTCTCGCTGTTC 59.198 41.667 0.00 0.00 0.00 3.18
115 116 4.317139 CGGTAATTAATGTCTCGCTGTTCG 60.317 45.833 0.00 0.00 40.15 3.95
116 117 4.565564 GGTAATTAATGTCTCGCTGTTCGT 59.434 41.667 0.00 0.00 39.67 3.85
117 118 5.063060 GGTAATTAATGTCTCGCTGTTCGTT 59.937 40.000 0.00 0.00 39.67 3.85
118 119 5.607119 AATTAATGTCTCGCTGTTCGTTT 57.393 34.783 0.00 0.00 39.67 3.60
119 120 2.949714 AATGTCTCGCTGTTCGTTTG 57.050 45.000 0.00 0.00 39.67 2.93
120 121 2.148916 ATGTCTCGCTGTTCGTTTGA 57.851 45.000 0.00 0.00 39.67 2.69
121 122 1.929230 TGTCTCGCTGTTCGTTTGAA 58.071 45.000 0.00 0.00 39.67 2.69
122 123 2.479837 TGTCTCGCTGTTCGTTTGAAT 58.520 42.857 0.00 0.00 39.67 2.57
123 124 2.475111 TGTCTCGCTGTTCGTTTGAATC 59.525 45.455 0.00 0.00 39.67 2.52
124 125 2.066262 TCTCGCTGTTCGTTTGAATCC 58.934 47.619 0.00 0.00 39.67 3.01
125 126 1.798223 CTCGCTGTTCGTTTGAATCCA 59.202 47.619 0.00 0.00 39.67 3.41
126 127 2.416547 CTCGCTGTTCGTTTGAATCCAT 59.583 45.455 0.00 0.00 39.67 3.41
127 128 2.811431 TCGCTGTTCGTTTGAATCCATT 59.189 40.909 0.00 0.00 39.67 3.16
128 129 3.120338 TCGCTGTTCGTTTGAATCCATTC 60.120 43.478 0.00 0.00 39.67 2.67
129 130 3.364864 CGCTGTTCGTTTGAATCCATTCA 60.365 43.478 0.00 0.00 44.42 2.57
130 131 6.989519 TCGCTGTTCGTTTGAATCCATTCAA 61.990 40.000 10.14 10.14 44.63 2.69
131 132 8.220917 TCGCTGTTCGTTTGAATCCATTCAAT 62.221 38.462 14.10 0.00 44.60 2.57
132 133 9.589488 TCGCTGTTCGTTTGAATCCATTCAATT 62.589 37.037 14.10 0.00 44.60 2.32
153 154 9.491675 TCAATTTATTCGTTTTACTGTACAGGA 57.508 29.630 26.12 16.51 0.00 3.86
157 158 6.737254 ATTCGTTTTACTGTACAGGATTGG 57.263 37.500 26.12 11.01 0.00 3.16
158 159 5.217978 TCGTTTTACTGTACAGGATTGGT 57.782 39.130 26.12 8.05 0.00 3.67
159 160 6.343716 TCGTTTTACTGTACAGGATTGGTA 57.656 37.500 26.12 7.04 0.00 3.25
160 161 6.392354 TCGTTTTACTGTACAGGATTGGTAG 58.608 40.000 26.12 10.64 0.00 3.18
161 162 5.063060 CGTTTTACTGTACAGGATTGGTAGC 59.937 44.000 26.12 6.83 0.00 3.58
162 163 2.961526 ACTGTACAGGATTGGTAGCG 57.038 50.000 26.12 0.00 0.00 4.26
163 164 2.453521 ACTGTACAGGATTGGTAGCGA 58.546 47.619 26.12 0.00 0.00 4.93
164 165 3.031736 ACTGTACAGGATTGGTAGCGAT 58.968 45.455 26.12 0.00 0.00 4.58
165 166 3.181475 ACTGTACAGGATTGGTAGCGATG 60.181 47.826 26.12 0.00 0.00 3.84
166 167 2.764010 TGTACAGGATTGGTAGCGATGT 59.236 45.455 0.00 0.00 0.00 3.06
167 168 3.955551 TGTACAGGATTGGTAGCGATGTA 59.044 43.478 0.00 0.00 0.00 2.29
168 169 3.454371 ACAGGATTGGTAGCGATGTAC 57.546 47.619 0.00 0.00 0.00 2.90
169 170 3.031736 ACAGGATTGGTAGCGATGTACT 58.968 45.455 0.00 0.00 0.00 2.73
170 171 3.068307 ACAGGATTGGTAGCGATGTACTC 59.932 47.826 0.00 0.00 0.00 2.59
171 172 2.628657 AGGATTGGTAGCGATGTACTCC 59.371 50.000 0.00 0.00 0.00 3.85
172 173 2.288886 GGATTGGTAGCGATGTACTCCC 60.289 54.545 0.00 0.00 0.00 4.30
173 174 2.154567 TTGGTAGCGATGTACTCCCT 57.845 50.000 0.00 0.00 0.00 4.20
174 175 1.688772 TGGTAGCGATGTACTCCCTC 58.311 55.000 0.00 0.00 0.00 4.30
175 176 0.960286 GGTAGCGATGTACTCCCTCC 59.040 60.000 0.00 0.00 0.00 4.30
176 177 0.592148 GTAGCGATGTACTCCCTCCG 59.408 60.000 0.00 0.00 0.00 4.63
177 178 0.182061 TAGCGATGTACTCCCTCCGT 59.818 55.000 0.00 0.00 0.00 4.69
178 179 0.683504 AGCGATGTACTCCCTCCGTT 60.684 55.000 0.00 0.00 0.00 4.44
179 180 0.248949 GCGATGTACTCCCTCCGTTC 60.249 60.000 0.00 0.00 0.00 3.95
180 181 0.384669 CGATGTACTCCCTCCGTTCC 59.615 60.000 0.00 0.00 0.00 3.62
181 182 1.777941 GATGTACTCCCTCCGTTCCT 58.222 55.000 0.00 0.00 0.00 3.36
182 183 2.747467 CGATGTACTCCCTCCGTTCCTA 60.747 54.545 0.00 0.00 0.00 2.94
183 184 2.905415 TGTACTCCCTCCGTTCCTAA 57.095 50.000 0.00 0.00 0.00 2.69
184 185 3.173953 TGTACTCCCTCCGTTCCTAAA 57.826 47.619 0.00 0.00 0.00 1.85
185 186 3.716431 TGTACTCCCTCCGTTCCTAAAT 58.284 45.455 0.00 0.00 0.00 1.40
186 187 4.870636 TGTACTCCCTCCGTTCCTAAATA 58.129 43.478 0.00 0.00 0.00 1.40
187 188 5.461327 TGTACTCCCTCCGTTCCTAAATAT 58.539 41.667 0.00 0.00 0.00 1.28
188 189 5.901276 TGTACTCCCTCCGTTCCTAAATATT 59.099 40.000 0.00 0.00 0.00 1.28
189 190 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
190 191 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
191 192 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
192 193 5.677567 TCCCTCCGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
193 194 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
194 195 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
195 196 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
196 197 7.122204 CCCTCCGTTCCTAAATATTTGTCTTTT 59.878 37.037 11.05 0.00 0.00 2.27
197 198 8.520351 CCTCCGTTCCTAAATATTTGTCTTTTT 58.480 33.333 11.05 0.00 0.00 1.94
236 237 9.462606 TGGACTACCACATACAGATGTATATAG 57.537 37.037 5.21 7.73 44.82 1.31
237 238 9.682465 GGACTACCACATACAGATGTATATAGA 57.318 37.037 5.21 0.00 44.82 1.98
271 272 6.305693 AGTGTAAAGTCACTCATTTTGCTC 57.694 37.500 0.00 0.00 44.07 4.26
272 273 5.239525 AGTGTAAAGTCACTCATTTTGCTCC 59.760 40.000 0.00 0.00 44.07 4.70
273 274 3.904136 AAAGTCACTCATTTTGCTCCG 57.096 42.857 0.00 0.00 0.00 4.63
274 275 2.550830 AGTCACTCATTTTGCTCCGT 57.449 45.000 0.00 0.00 0.00 4.69
275 276 3.678056 AGTCACTCATTTTGCTCCGTA 57.322 42.857 0.00 0.00 0.00 4.02
276 277 4.207891 AGTCACTCATTTTGCTCCGTAT 57.792 40.909 0.00 0.00 0.00 3.06
277 278 3.935203 AGTCACTCATTTTGCTCCGTATG 59.065 43.478 0.00 0.00 0.00 2.39
278 279 3.684788 GTCACTCATTTTGCTCCGTATGT 59.315 43.478 0.00 0.00 0.00 2.29
279 280 4.868171 GTCACTCATTTTGCTCCGTATGTA 59.132 41.667 0.00 0.00 0.00 2.29
280 281 5.005779 GTCACTCATTTTGCTCCGTATGTAG 59.994 44.000 0.00 0.00 0.00 2.74
281 282 3.871594 ACTCATTTTGCTCCGTATGTAGC 59.128 43.478 0.00 0.00 39.25 3.58
282 283 3.202906 TCATTTTGCTCCGTATGTAGCC 58.797 45.455 0.00 0.00 37.97 3.93
283 284 2.772077 TTTTGCTCCGTATGTAGCCA 57.228 45.000 0.00 0.00 37.97 4.75
284 285 3.275617 TTTTGCTCCGTATGTAGCCAT 57.724 42.857 0.00 0.00 37.97 4.40
285 286 3.275617 TTTGCTCCGTATGTAGCCATT 57.724 42.857 0.00 0.00 37.97 3.16
286 287 3.275617 TTGCTCCGTATGTAGCCATTT 57.724 42.857 0.00 0.00 37.97 2.32
287 288 2.560504 TGCTCCGTATGTAGCCATTTG 58.439 47.619 0.00 0.00 37.97 2.32
288 289 2.093181 TGCTCCGTATGTAGCCATTTGT 60.093 45.455 0.00 0.00 37.97 2.83
289 290 2.943033 GCTCCGTATGTAGCCATTTGTT 59.057 45.455 0.00 0.00 32.40 2.83
290 291 3.242739 GCTCCGTATGTAGCCATTTGTTG 60.243 47.826 0.00 0.00 32.40 3.33
291 292 4.188462 CTCCGTATGTAGCCATTTGTTGA 58.812 43.478 0.00 0.00 32.29 3.18
292 293 4.580868 TCCGTATGTAGCCATTTGTTGAA 58.419 39.130 0.00 0.00 32.29 2.69
293 294 5.004448 TCCGTATGTAGCCATTTGTTGAAA 58.996 37.500 0.00 0.00 32.29 2.69
294 295 5.650266 TCCGTATGTAGCCATTTGTTGAAAT 59.350 36.000 0.00 0.00 32.29 2.17
295 296 5.971202 CCGTATGTAGCCATTTGTTGAAATC 59.029 40.000 0.00 0.00 32.29 2.17
296 297 6.183360 CCGTATGTAGCCATTTGTTGAAATCT 60.183 38.462 0.00 0.00 32.29 2.40
297 298 7.250569 CGTATGTAGCCATTTGTTGAAATCTT 58.749 34.615 0.00 0.00 32.29 2.40
298 299 7.754924 CGTATGTAGCCATTTGTTGAAATCTTT 59.245 33.333 0.00 0.00 32.29 2.52
301 302 9.643693 ATGTAGCCATTTGTTGAAATCTTTAAG 57.356 29.630 0.00 0.00 28.65 1.85
302 303 8.855110 TGTAGCCATTTGTTGAAATCTTTAAGA 58.145 29.630 0.00 0.00 28.65 2.10
303 304 9.691362 GTAGCCATTTGTTGAAATCTTTAAGAA 57.309 29.630 0.00 0.00 28.65 2.52
305 306 9.612066 AGCCATTTGTTGAAATCTTTAAGAAAA 57.388 25.926 0.00 0.00 28.65 2.29
306 307 9.650371 GCCATTTGTTGAAATCTTTAAGAAAAC 57.350 29.630 0.00 3.04 28.65 2.43
346 347 6.420008 GCTTGTTCTCGTAACTCTGTTTTCTA 59.580 38.462 5.30 0.00 0.00 2.10
353 354 7.434307 TCTCGTAACTCTGTTTTCTAACAAGTG 59.566 37.037 0.00 0.00 43.33 3.16
432 433 3.812156 AAAGAAAACAAAACCCCTCCG 57.188 42.857 0.00 0.00 0.00 4.63
440 441 1.063654 AAAACCCCTCCGAACCTCCA 61.064 55.000 0.00 0.00 0.00 3.86
464 465 2.724174 GCAGTTGTATTTTTCACGCACC 59.276 45.455 0.00 0.00 0.00 5.01
485 486 4.018960 ACCTGTCATTCCTAGTTGATGCTT 60.019 41.667 0.00 0.00 0.00 3.91
492 493 5.885230 TTCCTAGTTGATGCTTGACAATG 57.115 39.130 0.00 0.00 0.00 2.82
499 500 4.933505 TGATGCTTGACAATGAAAACCA 57.066 36.364 0.00 0.00 0.00 3.67
521 2495 5.445964 CATAGGCTAAAACCAACCATACCT 58.554 41.667 0.00 0.00 0.00 3.08
523 2497 5.727243 AGGCTAAAACCAACCATACCTAT 57.273 39.130 0.00 0.00 0.00 2.57
532 2506 7.875327 AACCAACCATACCTATATTGTTGAC 57.125 36.000 11.03 0.00 42.82 3.18
538 2512 9.706691 AACCATACCTATATTGTTGACGATAAG 57.293 33.333 0.00 0.00 28.16 1.73
562 2541 3.878778 ACACTTCATAACCCATGAGCTC 58.121 45.455 6.82 6.82 44.47 4.09
565 2544 2.627515 TCATAACCCATGAGCTCAGC 57.372 50.000 22.96 0.00 38.79 4.26
578 2557 2.931325 GAGCTCAGCTGTGATTCAGAAG 59.069 50.000 19.61 4.49 46.27 2.85
584 2563 1.396301 GCTGTGATTCAGAAGAAGCCG 59.604 52.381 0.00 0.00 46.27 5.52
587 2566 3.937706 CTGTGATTCAGAAGAAGCCGAAT 59.062 43.478 0.00 0.00 46.27 3.34
589 2568 5.674525 TGTGATTCAGAAGAAGCCGAATAT 58.325 37.500 0.00 0.00 39.36 1.28
590 2569 5.755375 TGTGATTCAGAAGAAGCCGAATATC 59.245 40.000 0.00 0.00 39.36 1.63
634 2614 7.178983 ACAGATCCAAAATATCTTTTGCCTCAA 59.821 33.333 10.07 0.00 46.47 3.02
636 2616 6.036577 TCCAAAATATCTTTTGCCTCAACC 57.963 37.500 10.07 0.00 46.47 3.77
638 2618 6.213195 TCCAAAATATCTTTTGCCTCAACCAT 59.787 34.615 10.07 0.00 46.47 3.55
644 2624 9.603921 AATATCTTTTGCCTCAACCATTAATTG 57.396 29.630 0.00 0.00 0.00 2.32
645 2625 6.662865 TCTTTTGCCTCAACCATTAATTGA 57.337 33.333 0.00 0.00 34.89 2.57
664 2644 7.653767 AATTGAGTACAAAAGAGTAGTTCCG 57.346 36.000 0.00 0.00 39.54 4.30
665 2645 5.130292 TGAGTACAAAAGAGTAGTTCCGG 57.870 43.478 0.00 0.00 0.00 5.14
672 2652 9.423061 GTACAAAAGAGTAGTTCCGGTAATTAA 57.577 33.333 0.00 0.00 0.00 1.40
673 2653 8.315391 ACAAAAGAGTAGTTCCGGTAATTAAC 57.685 34.615 0.00 0.00 0.00 2.01
675 2655 7.895975 AAAGAGTAGTTCCGGTAATTAACAC 57.104 36.000 0.00 0.00 0.00 3.32
680 2660 7.864686 AGTAGTTCCGGTAATTAACACAAAAC 58.135 34.615 0.00 0.00 0.00 2.43
683 2663 5.692613 TCCGGTAATTAACACAAAACCAG 57.307 39.130 0.00 0.00 0.00 4.00
685 2665 4.231439 CGGTAATTAACACAAAACCAGGC 58.769 43.478 0.64 0.00 0.00 4.85
706 2686 3.608241 GCGAAAATCGTCACAATTCACCA 60.608 43.478 1.45 0.00 42.81 4.17
712 2692 0.387239 GTCACAATTCACCAAGCGGC 60.387 55.000 0.00 0.00 34.57 6.53
718 2698 0.314935 ATTCACCAAGCGGCAAACAG 59.685 50.000 1.45 0.00 34.57 3.16
725 2705 2.292267 CAAGCGGCAAACAGGATATCT 58.708 47.619 1.45 0.00 0.00 1.98
734 2714 5.121811 GCAAACAGGATATCTCACTCACAT 58.878 41.667 2.05 0.00 0.00 3.21
744 2724 8.085296 GGATATCTCACTCACATCTTTACGAAT 58.915 37.037 2.05 0.00 0.00 3.34
750 2730 6.036470 CACTCACATCTTTACGAATAGAGCA 58.964 40.000 0.00 0.00 0.00 4.26
754 2734 4.267928 ACATCTTTACGAATAGAGCAACGC 59.732 41.667 0.00 0.00 0.00 4.84
785 2765 3.243877 CGCATTTGTAGTCATCTTCCTCG 59.756 47.826 0.00 0.00 0.00 4.63
846 2851 6.600882 AAGAAGCCAAAGAAATGATGTGAT 57.399 33.333 0.00 0.00 0.00 3.06
854 2859 6.425721 CCAAAGAAATGATGTGATTGCAAACT 59.574 34.615 1.71 0.00 0.00 2.66
921 2944 1.128692 GTTACGACAGTGCAATCCAGC 59.871 52.381 0.00 0.00 0.00 4.85
969 2996 3.314388 CTTCGCTTGGTTGGCTCGC 62.314 63.158 0.00 0.00 0.00 5.03
1827 3854 2.202171 GTGTTTGCGACGATGCCG 60.202 61.111 0.00 0.00 42.50 5.69
1938 3965 2.539081 GGAAGAGGGCCACCAGGTT 61.539 63.158 6.18 0.00 40.13 3.50
1965 3992 2.032178 GGTCACCGCTATCAATTTGCTC 59.968 50.000 0.00 0.00 0.00 4.26
2109 4136 3.153130 TGGCAAAGTGAAATCATCGGAA 58.847 40.909 0.00 0.00 0.00 4.30
2436 4463 3.887716 AGATATTTGACAAGATGGCAGGC 59.112 43.478 0.00 0.00 36.33 4.85
2508 4535 1.003233 GGGGAGAACTGCACTGGAC 60.003 63.158 0.00 0.00 0.00 4.02
2553 4580 2.626088 GTCTGCAACCAAATGAGAGC 57.374 50.000 0.00 0.00 0.00 4.09
2633 4660 2.541383 CGCAGTTCAACTCAATGCAACA 60.541 45.455 0.00 0.00 36.70 3.33
2855 4882 2.489971 TCAACTCGAACATGACCAACC 58.510 47.619 0.00 0.00 0.00 3.77
3038 5065 2.556622 GTTTTGTCAACGGGGACATGAT 59.443 45.455 11.47 0.00 46.37 2.45
3063 5090 3.458857 ACCCTCAGAGCAAGATGATTCAT 59.541 43.478 0.00 0.00 0.00 2.57
3102 5129 7.257790 TCTGTCAGGAAAGATTGGAGAAATA 57.742 36.000 0.00 0.00 0.00 1.40
3177 5204 4.466370 ACAGAGCCTAACAAGCATAGTGTA 59.534 41.667 0.00 0.00 0.00 2.90
3201 5228 0.468226 TGGCTGTCGTCTTTGGTCTT 59.532 50.000 0.00 0.00 0.00 3.01
3210 5237 6.206498 TGTCGTCTTTGGTCTTATATCATCG 58.794 40.000 0.00 0.00 0.00 3.84
3345 5372 9.553064 GACACAAATATCTATCACCAATTCTCT 57.447 33.333 0.00 0.00 0.00 3.10
3436 5464 1.971481 TCAGCAAAAGCAAGAGAGCA 58.029 45.000 0.00 0.00 36.85 4.26
3465 5493 4.883585 ACGCAGATATGGTTTCATGACAAT 59.116 37.500 0.00 0.00 34.96 2.71
3474 5502 3.691118 GGTTTCATGACAATCTGCAGCTA 59.309 43.478 9.47 0.00 0.00 3.32
3480 5509 5.699458 TCATGACAATCTGCAGCTATATGTG 59.301 40.000 9.47 3.57 0.00 3.21
3490 5519 5.673514 TGCAGCTATATGTGACAGATTCAA 58.326 37.500 0.00 0.00 35.39 2.69
3515 5544 4.063689 CTCACACAGCTTCTGAATTCTGT 58.936 43.478 15.35 15.35 40.08 3.41
3533 5562 4.067896 TCTGTTGCTCCTTTGCTCTAAAG 58.932 43.478 0.00 0.00 44.35 1.85
3550 5579 8.562892 TGCTCTAAAGAAAACTTCTGAATTCTG 58.437 33.333 7.05 6.50 40.59 3.02
3551 5580 8.778358 GCTCTAAAGAAAACTTCTGAATTCTGA 58.222 33.333 10.68 10.68 40.59 3.27
3580 5609 2.906389 AGCACCAGTACAATCTTCAGGA 59.094 45.455 0.00 0.00 0.00 3.86
3599 5628 5.061853 CAGGAAACATACATGAGGGATCAG 58.938 45.833 0.00 0.00 0.00 2.90
3600 5629 4.723789 AGGAAACATACATGAGGGATCAGT 59.276 41.667 0.00 0.00 0.00 3.41
3614 5643 3.376540 GGATCAGTTCTCATGTACTCGC 58.623 50.000 0.00 0.00 0.00 5.03
3650 5687 1.900498 GCAGGGCTTGTCTTGCTGT 60.900 57.895 2.06 0.00 0.00 4.40
3666 5703 2.017049 GCTGTTGGCAACGGAGATTAT 58.983 47.619 36.61 0.00 40.26 1.28
3680 5717 6.281405 ACGGAGATTATACACTGATTGGAAC 58.719 40.000 0.00 0.00 0.00 3.62
3692 5729 2.594303 TGGAACAAGTGCCGGCTG 60.594 61.111 29.70 20.43 31.92 4.85
3693 5730 2.594592 GGAACAAGTGCCGGCTGT 60.595 61.111 29.70 21.17 0.00 4.40
3694 5731 2.639286 GAACAAGTGCCGGCTGTG 59.361 61.111 29.70 23.38 0.00 3.66
3695 5732 3.542629 GAACAAGTGCCGGCTGTGC 62.543 63.158 29.70 18.85 0.00 4.57
3820 5862 7.500720 AACACACATACATCATACATGGATG 57.499 36.000 12.09 12.09 44.04 3.51
3825 5867 9.358406 ACACATACATCATACATGGATGAAATT 57.642 29.630 24.30 13.43 41.69 1.82
3874 5918 7.882791 TCACATTTCTTGGCAAAGATAGAACTA 59.117 33.333 3.86 0.00 42.04 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.738521 TTCCGCTTGTGCTCTCGC 60.739 61.111 0.00 0.00 36.97 5.03
1 2 2.720758 CGTTCCGCTTGTGCTCTCG 61.721 63.158 0.00 0.00 36.97 4.04
2 3 1.222115 AACGTTCCGCTTGTGCTCTC 61.222 55.000 0.00 0.00 36.97 3.20
3 4 1.227556 AACGTTCCGCTTGTGCTCT 60.228 52.632 0.00 0.00 36.97 4.09
4 5 1.082756 CAACGTTCCGCTTGTGCTC 60.083 57.895 0.00 0.00 36.97 4.26
5 6 3.022287 CAACGTTCCGCTTGTGCT 58.978 55.556 0.00 0.00 36.97 4.40
6 7 2.725815 GCAACGTTCCGCTTGTGC 60.726 61.111 0.00 0.00 0.00 4.57
7 8 2.051345 GGCAACGTTCCGCTTGTG 60.051 61.111 10.07 0.00 0.00 3.33
19 20 2.846918 GCGCTCGATATCGGCAAC 59.153 61.111 26.90 18.80 40.29 4.17
20 21 2.120355 TACGCGCTCGATATCGGCAA 62.120 55.000 26.90 13.05 40.29 4.52
21 22 2.609759 TACGCGCTCGATATCGGCA 61.610 57.895 26.90 11.47 40.29 5.69
22 23 2.144680 GTACGCGCTCGATATCGGC 61.145 63.158 24.12 22.57 40.29 5.54
23 24 0.789753 CAGTACGCGCTCGATATCGG 60.790 60.000 24.12 15.68 40.29 4.18
24 25 0.163146 TCAGTACGCGCTCGATATCG 59.837 55.000 19.14 19.14 39.41 2.92
25 26 2.311450 TTCAGTACGCGCTCGATATC 57.689 50.000 5.73 0.00 39.41 1.63
26 27 2.225727 TCATTCAGTACGCGCTCGATAT 59.774 45.455 5.73 0.00 39.41 1.63
27 28 1.600485 TCATTCAGTACGCGCTCGATA 59.400 47.619 5.73 0.00 39.41 2.92
28 29 0.380733 TCATTCAGTACGCGCTCGAT 59.619 50.000 5.73 0.00 39.41 3.59
29 30 0.522705 GTCATTCAGTACGCGCTCGA 60.523 55.000 5.73 0.00 39.41 4.04
30 31 0.523546 AGTCATTCAGTACGCGCTCG 60.524 55.000 5.73 0.00 42.43 5.03
31 32 1.584308 GAAGTCATTCAGTACGCGCTC 59.416 52.381 5.73 0.00 35.37 5.03
32 33 1.630148 GAAGTCATTCAGTACGCGCT 58.370 50.000 5.73 0.00 35.37 5.92
33 34 0.294887 CGAAGTCATTCAGTACGCGC 59.705 55.000 5.73 0.00 34.94 6.86
34 35 0.294887 GCGAAGTCATTCAGTACGCG 59.705 55.000 3.53 3.53 34.94 6.01
35 36 1.321743 CAGCGAAGTCATTCAGTACGC 59.678 52.381 0.00 0.00 43.84 4.42
36 37 1.321743 GCAGCGAAGTCATTCAGTACG 59.678 52.381 0.00 0.00 34.94 3.67
37 38 1.661112 GGCAGCGAAGTCATTCAGTAC 59.339 52.381 0.00 0.00 34.94 2.73
38 39 1.275010 TGGCAGCGAAGTCATTCAGTA 59.725 47.619 0.00 0.00 34.94 2.74
39 40 0.035317 TGGCAGCGAAGTCATTCAGT 59.965 50.000 0.00 0.00 34.94 3.41
40 41 0.725686 CTGGCAGCGAAGTCATTCAG 59.274 55.000 0.00 0.00 34.94 3.02
41 42 0.674581 CCTGGCAGCGAAGTCATTCA 60.675 55.000 9.56 0.00 34.94 2.57
42 43 0.391661 TCCTGGCAGCGAAGTCATTC 60.392 55.000 9.56 0.00 0.00 2.67
43 44 0.036732 TTCCTGGCAGCGAAGTCATT 59.963 50.000 9.56 0.00 0.00 2.57
44 45 0.254178 ATTCCTGGCAGCGAAGTCAT 59.746 50.000 18.71 4.83 0.00 3.06
45 46 0.036732 AATTCCTGGCAGCGAAGTCA 59.963 50.000 18.71 2.40 0.00 3.41
46 47 0.729690 GAATTCCTGGCAGCGAAGTC 59.270 55.000 21.44 21.44 0.00 3.01
47 48 0.678048 GGAATTCCTGGCAGCGAAGT 60.678 55.000 17.73 17.04 0.00 3.01
48 49 1.709147 CGGAATTCCTGGCAGCGAAG 61.709 60.000 22.05 3.86 0.00 3.79
49 50 1.745115 CGGAATTCCTGGCAGCGAA 60.745 57.895 22.05 14.26 0.00 4.70
50 51 2.125147 CGGAATTCCTGGCAGCGA 60.125 61.111 22.05 5.23 0.00 4.93
51 52 3.204827 CCGGAATTCCTGGCAGCG 61.205 66.667 22.05 5.96 0.00 5.18
52 53 2.044946 ACCGGAATTCCTGGCAGC 60.045 61.111 25.80 0.00 34.50 5.25
53 54 1.002134 ACACCGGAATTCCTGGCAG 60.002 57.895 25.80 21.72 34.50 4.85
54 55 1.002624 GACACCGGAATTCCTGGCA 60.003 57.895 25.80 0.00 34.50 4.92
55 56 0.744771 GAGACACCGGAATTCCTGGC 60.745 60.000 25.80 19.42 34.50 4.85
56 57 0.905357 AGAGACACCGGAATTCCTGG 59.095 55.000 24.84 24.84 36.31 4.45
57 58 1.406069 CCAGAGACACCGGAATTCCTG 60.406 57.143 22.05 17.93 0.00 3.86
58 59 0.905357 CCAGAGACACCGGAATTCCT 59.095 55.000 22.05 3.07 0.00 3.36
59 60 0.902531 TCCAGAGACACCGGAATTCC 59.097 55.000 15.01 15.01 0.00 3.01
60 61 2.990066 ATCCAGAGACACCGGAATTC 57.010 50.000 9.46 0.14 31.18 2.17
61 62 3.347216 CAAATCCAGAGACACCGGAATT 58.653 45.455 9.46 0.00 31.18 2.17
62 63 2.941415 GCAAATCCAGAGACACCGGAAT 60.941 50.000 9.46 0.00 31.18 3.01
63 64 1.610624 GCAAATCCAGAGACACCGGAA 60.611 52.381 9.46 0.00 31.18 4.30
64 65 0.036388 GCAAATCCAGAGACACCGGA 60.036 55.000 9.46 0.00 0.00 5.14
65 66 0.036010 AGCAAATCCAGAGACACCGG 60.036 55.000 0.00 0.00 0.00 5.28
66 67 1.734465 GAAGCAAATCCAGAGACACCG 59.266 52.381 0.00 0.00 0.00 4.94
67 68 1.734465 CGAAGCAAATCCAGAGACACC 59.266 52.381 0.00 0.00 0.00 4.16
68 69 2.413453 GTCGAAGCAAATCCAGAGACAC 59.587 50.000 0.00 0.00 0.00 3.67
69 70 2.300152 AGTCGAAGCAAATCCAGAGACA 59.700 45.455 0.00 0.00 0.00 3.41
70 71 2.966050 AGTCGAAGCAAATCCAGAGAC 58.034 47.619 0.00 0.00 0.00 3.36
71 72 3.589988 GAAGTCGAAGCAAATCCAGAGA 58.410 45.455 0.00 0.00 0.00 3.10
72 73 2.346847 CGAAGTCGAAGCAAATCCAGAG 59.653 50.000 0.00 0.00 43.02 3.35
73 74 2.337583 CGAAGTCGAAGCAAATCCAGA 58.662 47.619 0.00 0.00 43.02 3.86
74 75 1.394917 CCGAAGTCGAAGCAAATCCAG 59.605 52.381 1.43 0.00 43.02 3.86
75 76 1.270625 ACCGAAGTCGAAGCAAATCCA 60.271 47.619 1.43 0.00 43.02 3.41
76 77 1.439679 ACCGAAGTCGAAGCAAATCC 58.560 50.000 1.43 0.00 43.02 3.01
77 78 4.859629 ATTACCGAAGTCGAAGCAAATC 57.140 40.909 1.43 0.00 43.02 2.17
78 79 6.730960 TTAATTACCGAAGTCGAAGCAAAT 57.269 33.333 1.43 0.00 43.02 2.32
79 80 6.148150 ACATTAATTACCGAAGTCGAAGCAAA 59.852 34.615 1.43 0.00 43.02 3.68
80 81 5.640357 ACATTAATTACCGAAGTCGAAGCAA 59.360 36.000 1.43 0.00 43.02 3.91
81 82 5.172934 ACATTAATTACCGAAGTCGAAGCA 58.827 37.500 1.43 0.00 43.02 3.91
82 83 5.519206 AGACATTAATTACCGAAGTCGAAGC 59.481 40.000 1.43 0.00 43.02 3.86
83 84 6.075519 CGAGACATTAATTACCGAAGTCGAAG 60.076 42.308 1.43 0.00 43.02 3.79
84 85 5.740569 CGAGACATTAATTACCGAAGTCGAA 59.259 40.000 1.43 0.00 43.02 3.71
85 86 5.268544 CGAGACATTAATTACCGAAGTCGA 58.731 41.667 1.43 0.00 43.02 4.20
86 87 4.085721 GCGAGACATTAATTACCGAAGTCG 60.086 45.833 0.00 0.00 39.44 4.18
87 88 5.041940 AGCGAGACATTAATTACCGAAGTC 58.958 41.667 0.00 0.00 0.00 3.01
88 89 4.804139 CAGCGAGACATTAATTACCGAAGT 59.196 41.667 0.00 0.00 0.00 3.01
89 90 4.804139 ACAGCGAGACATTAATTACCGAAG 59.196 41.667 0.00 0.00 0.00 3.79
90 91 4.751060 ACAGCGAGACATTAATTACCGAA 58.249 39.130 0.00 0.00 0.00 4.30
91 92 4.380841 ACAGCGAGACATTAATTACCGA 57.619 40.909 0.00 0.00 0.00 4.69
92 93 4.317139 CGAACAGCGAGACATTAATTACCG 60.317 45.833 0.00 0.00 44.57 4.02
93 94 4.565564 ACGAACAGCGAGACATTAATTACC 59.434 41.667 0.00 0.00 44.57 2.85
94 95 5.697848 ACGAACAGCGAGACATTAATTAC 57.302 39.130 0.00 0.00 44.57 1.89
95 96 6.366604 TCAAACGAACAGCGAGACATTAATTA 59.633 34.615 0.00 0.00 44.57 1.40
96 97 5.178623 TCAAACGAACAGCGAGACATTAATT 59.821 36.000 0.00 0.00 44.57 1.40
97 98 4.688879 TCAAACGAACAGCGAGACATTAAT 59.311 37.500 0.00 0.00 44.57 1.40
98 99 4.052608 TCAAACGAACAGCGAGACATTAA 58.947 39.130 0.00 0.00 44.57 1.40
99 100 3.644823 TCAAACGAACAGCGAGACATTA 58.355 40.909 0.00 0.00 44.57 1.90
100 101 2.479837 TCAAACGAACAGCGAGACATT 58.520 42.857 0.00 0.00 44.57 2.71
101 102 2.148916 TCAAACGAACAGCGAGACAT 57.851 45.000 0.00 0.00 44.57 3.06
102 103 1.929230 TTCAAACGAACAGCGAGACA 58.071 45.000 0.00 0.00 44.57 3.41
103 104 2.159827 GGATTCAAACGAACAGCGAGAC 60.160 50.000 0.00 0.00 44.57 3.36
104 105 2.066262 GGATTCAAACGAACAGCGAGA 58.934 47.619 0.00 0.00 44.57 4.04
105 106 1.798223 TGGATTCAAACGAACAGCGAG 59.202 47.619 0.00 0.00 44.57 5.03
106 107 1.872388 TGGATTCAAACGAACAGCGA 58.128 45.000 0.00 0.00 44.57 4.93
107 108 3.163594 GAATGGATTCAAACGAACAGCG 58.836 45.455 0.00 0.00 40.21 5.18
108 109 4.159377 TGAATGGATTCAAACGAACAGC 57.841 40.909 0.00 0.00 43.26 4.40
127 128 9.491675 TCCTGTACAGTAAAACGAATAAATTGA 57.508 29.630 21.18 2.64 0.00 2.57
131 132 8.723311 CCAATCCTGTACAGTAAAACGAATAAA 58.277 33.333 21.18 0.00 0.00 1.40
132 133 7.879160 ACCAATCCTGTACAGTAAAACGAATAA 59.121 33.333 21.18 0.00 0.00 1.40
133 134 7.388437 ACCAATCCTGTACAGTAAAACGAATA 58.612 34.615 21.18 0.00 0.00 1.75
134 135 6.235664 ACCAATCCTGTACAGTAAAACGAAT 58.764 36.000 21.18 1.06 0.00 3.34
135 136 5.613329 ACCAATCCTGTACAGTAAAACGAA 58.387 37.500 21.18 0.00 0.00 3.85
136 137 5.217978 ACCAATCCTGTACAGTAAAACGA 57.782 39.130 21.18 10.50 0.00 3.85
137 138 5.063060 GCTACCAATCCTGTACAGTAAAACG 59.937 44.000 21.18 5.25 0.00 3.60
138 139 5.063060 CGCTACCAATCCTGTACAGTAAAAC 59.937 44.000 21.18 1.56 0.00 2.43
139 140 5.047164 TCGCTACCAATCCTGTACAGTAAAA 60.047 40.000 21.18 4.71 0.00 1.52
140 141 4.463539 TCGCTACCAATCCTGTACAGTAAA 59.536 41.667 21.18 7.17 0.00 2.01
141 142 4.018490 TCGCTACCAATCCTGTACAGTAA 58.982 43.478 21.18 9.67 0.00 2.24
142 143 3.623703 TCGCTACCAATCCTGTACAGTA 58.376 45.455 21.18 6.34 0.00 2.74
143 144 2.453521 TCGCTACCAATCCTGTACAGT 58.546 47.619 21.18 5.32 0.00 3.55
144 145 3.181475 ACATCGCTACCAATCCTGTACAG 60.181 47.826 16.34 16.34 0.00 2.74
145 146 2.764010 ACATCGCTACCAATCCTGTACA 59.236 45.455 0.00 0.00 0.00 2.90
146 147 3.454371 ACATCGCTACCAATCCTGTAC 57.546 47.619 0.00 0.00 0.00 2.90
147 148 4.212716 AGTACATCGCTACCAATCCTGTA 58.787 43.478 0.00 0.00 0.00 2.74
148 149 3.031736 AGTACATCGCTACCAATCCTGT 58.968 45.455 0.00 0.00 0.00 4.00
149 150 3.553096 GGAGTACATCGCTACCAATCCTG 60.553 52.174 0.00 0.00 0.00 3.86
150 151 2.628657 GGAGTACATCGCTACCAATCCT 59.371 50.000 0.00 0.00 0.00 3.24
151 152 2.288886 GGGAGTACATCGCTACCAATCC 60.289 54.545 0.00 0.00 36.94 3.01
152 153 3.027974 GGGAGTACATCGCTACCAATC 57.972 52.381 0.00 0.00 36.94 2.67
160 161 0.248949 GAACGGAGGGAGTACATCGC 60.249 60.000 0.00 0.00 41.11 4.58
161 162 0.384669 GGAACGGAGGGAGTACATCG 59.615 60.000 0.00 0.00 0.00 3.84
162 163 1.777941 AGGAACGGAGGGAGTACATC 58.222 55.000 0.00 0.00 0.00 3.06
163 164 3.393426 TTAGGAACGGAGGGAGTACAT 57.607 47.619 0.00 0.00 0.00 2.29
164 165 2.905415 TTAGGAACGGAGGGAGTACA 57.095 50.000 0.00 0.00 0.00 2.90
165 166 6.416631 AATATTTAGGAACGGAGGGAGTAC 57.583 41.667 0.00 0.00 0.00 2.73
166 167 6.384886 ACAAATATTTAGGAACGGAGGGAGTA 59.615 38.462 0.00 0.00 0.00 2.59
167 168 5.191124 ACAAATATTTAGGAACGGAGGGAGT 59.809 40.000 0.00 0.00 0.00 3.85
168 169 5.681639 ACAAATATTTAGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
169 170 5.427481 AGACAAATATTTAGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
170 171 5.681639 AGACAAATATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
171 172 7.625828 AAAGACAAATATTTAGGAACGGAGG 57.374 36.000 0.00 0.00 0.00 4.30
194 195 9.974980 GTGGTAGTCCATTTGAAATCTTTAAAA 57.025 29.630 0.00 0.00 46.20 1.52
195 196 9.137459 TGTGGTAGTCCATTTGAAATCTTTAAA 57.863 29.630 0.00 0.00 46.20 1.52
196 197 8.698973 TGTGGTAGTCCATTTGAAATCTTTAA 57.301 30.769 0.00 0.00 46.20 1.52
197 198 8.877864 ATGTGGTAGTCCATTTGAAATCTTTA 57.122 30.769 0.00 0.00 46.20 1.85
198 199 7.781324 ATGTGGTAGTCCATTTGAAATCTTT 57.219 32.000 0.00 0.00 46.20 2.52
199 200 7.888021 TGTATGTGGTAGTCCATTTGAAATCTT 59.112 33.333 0.00 0.00 46.20 2.40
200 201 7.402054 TGTATGTGGTAGTCCATTTGAAATCT 58.598 34.615 0.00 0.00 46.20 2.40
201 202 7.552687 TCTGTATGTGGTAGTCCATTTGAAATC 59.447 37.037 0.00 0.00 46.20 2.17
202 203 7.402054 TCTGTATGTGGTAGTCCATTTGAAAT 58.598 34.615 0.00 0.00 46.20 2.17
203 204 6.774673 TCTGTATGTGGTAGTCCATTTGAAA 58.225 36.000 0.00 0.00 46.20 2.69
204 205 6.367374 TCTGTATGTGGTAGTCCATTTGAA 57.633 37.500 0.00 0.00 46.20 2.69
205 206 6.070251 ACATCTGTATGTGGTAGTCCATTTGA 60.070 38.462 0.00 0.00 44.79 2.69
206 207 6.115446 ACATCTGTATGTGGTAGTCCATTTG 58.885 40.000 0.00 0.00 44.79 2.32
207 208 6.313519 ACATCTGTATGTGGTAGTCCATTT 57.686 37.500 0.00 0.00 44.79 2.32
208 209 5.957771 ACATCTGTATGTGGTAGTCCATT 57.042 39.130 0.00 0.00 44.79 3.16
209 210 8.901472 ATATACATCTGTATGTGGTAGTCCAT 57.099 34.615 12.10 0.00 45.99 3.41
210 211 9.462606 CTATATACATCTGTATGTGGTAGTCCA 57.537 37.037 12.10 0.00 45.99 4.02
211 212 9.682465 TCTATATACATCTGTATGTGGTAGTCC 57.318 37.037 12.10 0.00 45.99 3.85
249 250 5.452777 GGAGCAAAATGAGTGACTTTACAC 58.547 41.667 0.00 0.00 40.60 2.90
250 251 4.213270 CGGAGCAAAATGAGTGACTTTACA 59.787 41.667 0.00 0.00 0.00 2.41
251 252 4.213482 ACGGAGCAAAATGAGTGACTTTAC 59.787 41.667 0.00 0.00 0.00 2.01
252 253 4.385825 ACGGAGCAAAATGAGTGACTTTA 58.614 39.130 0.00 0.00 0.00 1.85
253 254 3.214328 ACGGAGCAAAATGAGTGACTTT 58.786 40.909 0.00 0.00 0.00 2.66
254 255 2.851195 ACGGAGCAAAATGAGTGACTT 58.149 42.857 0.00 0.00 0.00 3.01
255 256 2.550830 ACGGAGCAAAATGAGTGACT 57.449 45.000 0.00 0.00 0.00 3.41
256 257 3.684788 ACATACGGAGCAAAATGAGTGAC 59.315 43.478 0.00 0.00 0.00 3.67
257 258 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
258 259 4.260375 GCTACATACGGAGCAAAATGAGTG 60.260 45.833 0.00 0.00 38.62 3.51
259 260 3.871594 GCTACATACGGAGCAAAATGAGT 59.128 43.478 0.00 0.00 38.62 3.41
260 261 3.248602 GGCTACATACGGAGCAAAATGAG 59.751 47.826 0.00 0.00 40.64 2.90
261 262 3.202906 GGCTACATACGGAGCAAAATGA 58.797 45.455 0.00 0.00 40.64 2.57
262 263 2.942376 TGGCTACATACGGAGCAAAATG 59.058 45.455 0.00 0.00 40.64 2.32
263 264 3.275617 TGGCTACATACGGAGCAAAAT 57.724 42.857 0.00 0.00 40.64 1.82
264 265 2.772077 TGGCTACATACGGAGCAAAA 57.228 45.000 0.00 0.00 40.64 2.44
265 266 3.275617 AATGGCTACATACGGAGCAAA 57.724 42.857 0.00 0.00 40.64 3.68
266 267 2.942376 CAAATGGCTACATACGGAGCAA 59.058 45.455 0.00 0.00 40.64 3.91
267 268 2.093181 ACAAATGGCTACATACGGAGCA 60.093 45.455 0.00 0.00 40.64 4.26
268 269 2.561569 ACAAATGGCTACATACGGAGC 58.438 47.619 0.00 0.00 35.94 4.70
269 270 4.188462 TCAACAAATGGCTACATACGGAG 58.812 43.478 0.00 0.00 35.94 4.63
270 271 4.209307 TCAACAAATGGCTACATACGGA 57.791 40.909 0.00 0.00 35.94 4.69
271 272 4.955925 TTCAACAAATGGCTACATACGG 57.044 40.909 0.00 0.00 35.94 4.02
272 273 6.785191 AGATTTCAACAAATGGCTACATACG 58.215 36.000 0.00 0.00 35.94 3.06
273 274 8.986477 AAAGATTTCAACAAATGGCTACATAC 57.014 30.769 0.00 0.00 35.94 2.39
275 276 9.643693 CTTAAAGATTTCAACAAATGGCTACAT 57.356 29.630 0.00 0.00 39.54 2.29
276 277 8.855110 TCTTAAAGATTTCAACAAATGGCTACA 58.145 29.630 0.00 0.00 31.94 2.74
277 278 9.691362 TTCTTAAAGATTTCAACAAATGGCTAC 57.309 29.630 0.00 0.00 31.94 3.58
279 280 9.612066 TTTTCTTAAAGATTTCAACAAATGGCT 57.388 25.926 0.00 0.00 31.94 4.75
280 281 9.650371 GTTTTCTTAAAGATTTCAACAAATGGC 57.350 29.630 0.00 0.00 31.94 4.40
296 297 8.924691 GCATGCATCACTATTTGTTTTCTTAAA 58.075 29.630 14.21 0.00 0.00 1.52
297 298 8.306038 AGCATGCATCACTATTTGTTTTCTTAA 58.694 29.630 21.98 0.00 0.00 1.85
298 299 7.829725 AGCATGCATCACTATTTGTTTTCTTA 58.170 30.769 21.98 0.00 0.00 2.10
299 300 6.694447 AGCATGCATCACTATTTGTTTTCTT 58.306 32.000 21.98 0.00 0.00 2.52
300 301 6.276832 AGCATGCATCACTATTTGTTTTCT 57.723 33.333 21.98 0.00 0.00 2.52
301 302 6.366877 ACAAGCATGCATCACTATTTGTTTTC 59.633 34.615 21.98 0.00 0.00 2.29
302 303 6.225318 ACAAGCATGCATCACTATTTGTTTT 58.775 32.000 21.98 0.00 0.00 2.43
303 304 5.786311 ACAAGCATGCATCACTATTTGTTT 58.214 33.333 21.98 0.00 0.00 2.83
304 305 5.395682 ACAAGCATGCATCACTATTTGTT 57.604 34.783 21.98 0.00 0.00 2.83
305 306 5.184479 AGAACAAGCATGCATCACTATTTGT 59.816 36.000 21.98 15.45 0.00 2.83
306 307 5.647589 AGAACAAGCATGCATCACTATTTG 58.352 37.500 21.98 14.79 0.00 2.32
307 308 5.448225 CGAGAACAAGCATGCATCACTATTT 60.448 40.000 21.98 0.00 0.00 1.40
308 309 4.034858 CGAGAACAAGCATGCATCACTATT 59.965 41.667 21.98 0.00 0.00 1.73
309 310 3.558829 CGAGAACAAGCATGCATCACTAT 59.441 43.478 21.98 0.00 0.00 2.12
310 311 2.931969 CGAGAACAAGCATGCATCACTA 59.068 45.455 21.98 0.00 0.00 2.74
432 433 2.543777 TACAACTGCACTGGAGGTTC 57.456 50.000 2.28 0.00 0.00 3.62
440 441 3.066064 TGCGTGAAAAATACAACTGCACT 59.934 39.130 0.00 0.00 0.00 4.40
464 465 5.064452 GTCAAGCATCAACTAGGAATGACAG 59.936 44.000 0.00 0.00 35.82 3.51
485 486 7.375053 GTTTTAGCCTATGGTTTTCATTGTCA 58.625 34.615 0.00 0.00 37.30 3.58
492 493 5.011227 TGGTTGGTTTTAGCCTATGGTTTTC 59.989 40.000 0.00 0.00 0.00 2.29
499 500 5.727243 AGGTATGGTTGGTTTTAGCCTAT 57.273 39.130 0.00 0.00 0.00 2.57
532 2506 8.088365 TCATGGGTTATGAAGTGTATCTTATCG 58.912 37.037 0.00 0.00 42.69 2.92
538 2512 5.615289 AGCTCATGGGTTATGAAGTGTATC 58.385 41.667 0.00 0.00 44.84 2.24
562 2541 2.419324 GGCTTCTTCTGAATCACAGCTG 59.581 50.000 13.48 13.48 45.38 4.24
565 2544 2.964740 TCGGCTTCTTCTGAATCACAG 58.035 47.619 0.00 0.00 46.97 3.66
604 2583 9.305925 GGCAAAAGATATTTTGGATCTGTTTAG 57.694 33.333 23.09 0.00 41.04 1.85
605 2584 9.034800 AGGCAAAAGATATTTTGGATCTGTTTA 57.965 29.630 23.09 0.00 41.04 2.01
608 2587 6.664816 TGAGGCAAAAGATATTTTGGATCTGT 59.335 34.615 23.09 3.32 41.04 3.41
609 2588 7.104043 TGAGGCAAAAGATATTTTGGATCTG 57.896 36.000 23.09 2.18 41.04 2.90
611 2590 6.758416 GGTTGAGGCAAAAGATATTTTGGATC 59.242 38.462 23.09 9.60 41.04 3.36
612 2591 6.213195 TGGTTGAGGCAAAAGATATTTTGGAT 59.787 34.615 23.09 1.83 41.04 3.41
613 2592 5.541868 TGGTTGAGGCAAAAGATATTTTGGA 59.458 36.000 23.09 0.00 41.04 3.53
615 2594 7.910441 AATGGTTGAGGCAAAAGATATTTTG 57.090 32.000 18.92 18.92 42.96 2.44
620 2599 8.359875 TCAATTAATGGTTGAGGCAAAAGATA 57.640 30.769 0.00 0.00 32.23 1.98
622 2601 6.662865 TCAATTAATGGTTGAGGCAAAAGA 57.337 33.333 0.00 0.00 32.23 2.52
623 2602 6.956299 CTCAATTAATGGTTGAGGCAAAAG 57.044 37.500 8.75 0.00 45.50 2.27
638 2618 9.199982 CGGAACTACTCTTTTGTACTCAATTAA 57.800 33.333 0.00 0.00 33.32 1.40
644 2624 5.131594 ACCGGAACTACTCTTTTGTACTC 57.868 43.478 9.46 0.00 0.00 2.59
645 2625 6.655078 TTACCGGAACTACTCTTTTGTACT 57.345 37.500 9.46 0.00 0.00 2.73
646 2626 7.895975 AATTACCGGAACTACTCTTTTGTAC 57.104 36.000 9.46 0.00 0.00 2.90
649 2629 8.225777 GTGTTAATTACCGGAACTACTCTTTTG 58.774 37.037 9.46 0.00 0.00 2.44
658 2638 5.593502 TGGTTTTGTGTTAATTACCGGAACT 59.406 36.000 9.46 0.00 0.00 3.01
662 2642 4.800784 CCTGGTTTTGTGTTAATTACCGG 58.199 43.478 0.00 0.00 32.94 5.28
663 2643 4.231439 GCCTGGTTTTGTGTTAATTACCG 58.769 43.478 0.00 0.00 0.00 4.02
664 2644 4.023021 TCGCCTGGTTTTGTGTTAATTACC 60.023 41.667 0.00 0.00 0.00 2.85
665 2645 5.110940 TCGCCTGGTTTTGTGTTAATTAC 57.889 39.130 0.00 0.00 0.00 1.89
672 2652 2.542824 CGATTTTCGCCTGGTTTTGTGT 60.543 45.455 0.00 0.00 31.14 3.72
673 2653 2.050691 CGATTTTCGCCTGGTTTTGTG 58.949 47.619 0.00 0.00 31.14 3.33
675 2655 2.287308 TGACGATTTTCGCCTGGTTTTG 60.287 45.455 0.00 0.00 45.12 2.44
680 2660 0.871722 TTGTGACGATTTTCGCCTGG 59.128 50.000 0.00 0.00 45.12 4.45
683 2663 2.908626 GTGAATTGTGACGATTTTCGCC 59.091 45.455 0.00 0.00 45.12 5.54
685 2665 4.140518 TGGTGAATTGTGACGATTTTCG 57.859 40.909 0.00 0.00 46.93 3.46
706 2686 2.092968 TGAGATATCCTGTTTGCCGCTT 60.093 45.455 0.00 0.00 0.00 4.68
712 2692 6.580788 AGATGTGAGTGAGATATCCTGTTTG 58.419 40.000 0.00 0.00 0.00 2.93
718 2698 6.971602 TCGTAAAGATGTGAGTGAGATATCC 58.028 40.000 0.00 0.00 0.00 2.59
725 2705 6.127730 TGCTCTATTCGTAAAGATGTGAGTGA 60.128 38.462 0.00 0.00 0.00 3.41
734 2714 3.184541 GGCGTTGCTCTATTCGTAAAGA 58.815 45.455 0.00 0.00 0.00 2.52
744 2724 0.100682 GATGTCTCGGCGTTGCTCTA 59.899 55.000 6.85 0.00 0.00 2.43
750 2730 1.019278 AAATGCGATGTCTCGGCGTT 61.019 50.000 6.85 0.00 45.15 4.84
754 2734 2.535984 GACTACAAATGCGATGTCTCGG 59.464 50.000 0.00 0.00 45.15 4.63
764 2744 4.184629 ACGAGGAAGATGACTACAAATGC 58.815 43.478 0.00 0.00 0.00 3.56
785 2765 1.789506 AGTCGCTTGCTCAAGAAGAC 58.210 50.000 20.54 20.54 42.44 3.01
846 2851 1.136695 CACCCAAGCTTCAGTTTGCAA 59.863 47.619 0.00 0.00 35.33 4.08
854 2859 1.214175 TCCAACTTCACCCAAGCTTCA 59.786 47.619 0.00 0.00 35.17 3.02
921 2944 3.569049 GAGGGTGGTGACGTGTCGG 62.569 68.421 0.00 0.00 0.00 4.79
1323 3350 4.699522 AAGGTGAAGCGGTCGGGC 62.700 66.667 0.00 0.00 0.00 6.13
1590 3617 3.991725 CTCCCTGAAGCAGCCCAGC 62.992 68.421 6.84 0.00 0.00 4.85
1827 3854 0.034896 ATGTCACCACGGTCCTCAAC 59.965 55.000 0.00 0.00 0.00 3.18
1938 3965 1.262417 TGATAGCGGTGACCACTTCA 58.738 50.000 1.11 1.69 0.00 3.02
1965 3992 2.253452 GTTTGAGCACAGGCAGCG 59.747 61.111 0.00 0.00 44.61 5.18
2109 4136 4.935808 GTCGTCATCTGTCCAAATACCTTT 59.064 41.667 0.00 0.00 0.00 3.11
2427 4454 0.394762 TGACATCCTTGCCTGCCATC 60.395 55.000 0.00 0.00 0.00 3.51
2436 4463 4.394300 GTGTTCCAAGAGATGACATCCTTG 59.606 45.833 24.99 24.99 37.34 3.61
2508 4535 6.908870 TTACATTTCATCTCGGAGAACATG 57.091 37.500 12.40 13.01 34.09 3.21
2553 4580 1.597663 GTCAACACGGAGACAAAGGTG 59.402 52.381 0.00 0.00 34.93 4.00
2633 4660 5.406163 TCTGTGGGATCATACCATAGTCAT 58.594 41.667 12.31 0.00 44.65 3.06
2855 4882 1.593196 ACCTGTGTTGTCATGTTCCG 58.407 50.000 0.00 0.00 0.00 4.30
3038 5065 0.035725 CATCTTGCTCTGAGGGTGCA 60.036 55.000 6.83 0.00 41.80 4.57
3063 5090 4.191544 CTGACAGAAAGTTGGACACTTCA 58.808 43.478 0.00 0.00 45.77 3.02
3102 5129 3.753272 CAGATTGATTCGTTGGGTCAACT 59.247 43.478 8.80 0.00 41.62 3.16
3177 5204 0.886490 CAAAGACGACAGCCAGCCTT 60.886 55.000 0.00 0.00 0.00 4.35
3201 5228 2.832129 GGTTCTGGCCTCCGATGATATA 59.168 50.000 3.32 0.00 0.00 0.86
3210 5237 2.610532 GAATCGGGGTTCTGGCCTCC 62.611 65.000 3.32 0.99 0.00 4.30
3225 5252 4.458708 GCACGTTCTTCTTGACAAGAATC 58.541 43.478 26.66 18.92 45.75 2.52
3345 5372 0.958876 CACAGCAGCAAGAGCCATCA 60.959 55.000 0.00 0.00 43.56 3.07
3436 5464 1.204146 AACCATATCTGCGTCCTGGT 58.796 50.000 0.00 0.00 41.89 4.00
3465 5493 5.069516 TGAATCTGTCACATATAGCTGCAGA 59.930 40.000 20.43 0.00 36.21 4.26
3474 5502 6.372659 GTGTGAGGTTTGAATCTGTCACATAT 59.627 38.462 6.28 0.00 44.36 1.78
3480 5509 3.058639 GCTGTGTGAGGTTTGAATCTGTC 60.059 47.826 0.00 0.00 0.00 3.51
3490 5519 3.498774 ATTCAGAAGCTGTGTGAGGTT 57.501 42.857 0.00 0.00 45.32 3.50
3515 5544 5.594317 AGTTTTCTTTAGAGCAAAGGAGCAA 59.406 36.000 0.00 0.00 43.37 3.91
3533 5562 6.750963 GGCATCATCAGAATTCAGAAGTTTTC 59.249 38.462 8.44 0.00 0.00 2.29
3538 5567 4.261238 GCTGGCATCATCAGAATTCAGAAG 60.261 45.833 8.44 2.32 34.36 2.85
3539 5568 3.630769 GCTGGCATCATCAGAATTCAGAA 59.369 43.478 8.44 0.00 34.36 3.02
3541 5570 2.949644 TGCTGGCATCATCAGAATTCAG 59.050 45.455 8.44 0.00 34.36 3.02
3542 5571 2.686405 GTGCTGGCATCATCAGAATTCA 59.314 45.455 8.44 0.00 34.36 2.57
3543 5572 2.034305 GGTGCTGGCATCATCAGAATTC 59.966 50.000 0.00 0.00 34.36 2.17
3544 5573 2.029623 GGTGCTGGCATCATCAGAATT 58.970 47.619 0.51 0.00 34.36 2.17
3546 5575 0.328926 TGGTGCTGGCATCATCAGAA 59.671 50.000 4.26 0.00 31.30 3.02
3550 5579 1.303309 GTACTGGTGCTGGCATCATC 58.697 55.000 9.04 0.00 36.37 2.92
3551 5580 0.620030 TGTACTGGTGCTGGCATCAT 59.380 50.000 9.04 3.12 36.37 2.45
3580 5609 6.070021 TGAGAACTGATCCCTCATGTATGTTT 60.070 38.462 0.00 0.00 32.57 2.83
3599 5628 0.457853 TGCGGCGAGTACATGAGAAC 60.458 55.000 12.98 0.00 0.00 3.01
3600 5629 0.459899 ATGCGGCGAGTACATGAGAA 59.540 50.000 12.98 0.00 0.00 2.87
3623 5659 0.107945 ACAAGCCCTGCTCTTCGATC 60.108 55.000 0.00 0.00 38.25 3.69
3624 5660 0.107945 GACAAGCCCTGCTCTTCGAT 60.108 55.000 0.00 0.00 38.25 3.59
3635 5671 1.662044 CCAACAGCAAGACAAGCCC 59.338 57.895 0.00 0.00 0.00 5.19
3650 5687 4.081365 TCAGTGTATAATCTCCGTTGCCAA 60.081 41.667 0.00 0.00 0.00 4.52
3657 5694 6.280643 TGTTCCAATCAGTGTATAATCTCCG 58.719 40.000 0.00 0.00 0.00 4.63
3666 5703 3.146066 GGCACTTGTTCCAATCAGTGTA 58.854 45.455 0.00 0.00 0.00 2.90
3689 5726 2.050077 GTCAAAAGGCGGCACAGC 60.050 61.111 13.08 0.00 0.00 4.40
3690 5727 0.385390 AAAGTCAAAAGGCGGCACAG 59.615 50.000 13.08 0.00 0.00 3.66
3691 5728 0.820871 AAAAGTCAAAAGGCGGCACA 59.179 45.000 13.08 0.00 0.00 4.57
3692 5729 1.208259 CAAAAGTCAAAAGGCGGCAC 58.792 50.000 13.08 0.00 0.00 5.01
3693 5730 0.820871 ACAAAAGTCAAAAGGCGGCA 59.179 45.000 13.08 0.00 0.00 5.69
3694 5731 2.785713 TACAAAAGTCAAAAGGCGGC 57.214 45.000 0.00 0.00 0.00 6.53
3695 5732 4.041723 CAGTTACAAAAGTCAAAAGGCGG 58.958 43.478 0.00 0.00 0.00 6.13
3825 5867 7.706179 GTGACAGGAAATCAACTTTCATTTTGA 59.294 33.333 0.71 0.00 44.29 2.69
3874 5918 2.494870 GCATTTCTTCCTTGTCATGCCT 59.505 45.455 0.00 0.00 32.53 4.75
3936 6010 7.226325 TGCTGCTGCTTATGTTTGTTAATTTTT 59.774 29.630 17.00 0.00 40.48 1.94
3937 6011 6.705381 TGCTGCTGCTTATGTTTGTTAATTTT 59.295 30.769 17.00 0.00 40.48 1.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.