Multiple sequence alignment - TraesCS4D01G329600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G329600 chr4D 100.000 5479 0 0 1 5479 487871763 487877241 0.000000e+00 10118
1 TraesCS4D01G329600 chr4D 77.906 1299 227 41 3683 4958 488172629 488173890 0.000000e+00 754
2 TraesCS4D01G329600 chr4D 77.778 1125 200 37 3502 4595 488034129 488035234 0.000000e+00 647
3 TraesCS4D01G329600 chr4D 86.510 341 34 12 373 707 484257047 484257381 1.120000e-96 364
4 TraesCS4D01G329600 chr4D 75.106 707 128 28 2788 3453 488171711 488172410 2.500000e-73 287
5 TraesCS4D01G329600 chr4D 88.889 234 17 5 5 232 487872590 487872820 4.180000e-71 279
6 TraesCS4D01G329600 chr4B 92.568 5409 291 46 136 5471 623783147 623788517 0.000000e+00 7659
7 TraesCS4D01G329600 chr4B 91.932 3334 189 28 2179 5471 623644428 623647722 0.000000e+00 4593
8 TraesCS4D01G329600 chr4B 92.844 2166 115 17 1 2131 623642266 623644426 0.000000e+00 3105
9 TraesCS4D01G329600 chr4B 86.630 359 37 7 705 1058 623642151 623642503 2.390000e-103 387
10 TraesCS4D01G329600 chr4B 75.813 707 120 33 2788 3453 623955635 623954939 1.480000e-80 311
11 TraesCS4D01G329600 chr4B 87.795 254 24 5 705 955 623769703 623769952 1.930000e-74 291
12 TraesCS4D01G329600 chr4B 72.124 1191 229 68 2851 3982 623654666 623655812 1.170000e-66 265
13 TraesCS4D01G329600 chr4B 89.904 208 12 5 30 231 623643148 623643352 5.440000e-65 259
14 TraesCS4D01G329600 chr4B 97.872 141 3 0 1 141 623769818 623769958 1.520000e-60 244
15 TraesCS4D01G329600 chr4B 88.517 209 15 5 30 232 623783889 623784094 1.520000e-60 244
16 TraesCS4D01G329600 chr7B 89.510 2145 186 21 3363 5471 582937524 582939665 0.000000e+00 2678
17 TraesCS4D01G329600 chr7B 85.083 2105 231 42 705 2760 582932180 582934250 0.000000e+00 2071
18 TraesCS4D01G329600 chr7B 90.020 511 45 3 2788 3297 582937018 582937523 0.000000e+00 656
19 TraesCS4D01G329600 chr7B 83.168 505 68 13 816 1311 583174129 583174625 3.890000e-121 446
20 TraesCS4D01G329600 chr7B 87.465 359 38 4 705 1058 582931710 582932066 1.840000e-109 407
21 TraesCS4D01G329600 chr7B 87.952 332 31 8 377 704 687542280 687542606 3.100000e-102 383
22 TraesCS4D01G329600 chr7B 85.676 370 25 14 9 374 582931840 582932185 1.120000e-96 364
23 TraesCS4D01G329600 chr7B 78.087 575 88 23 1335 1891 583174923 583175477 4.090000e-86 329
24 TraesCS4D01G329600 chr7B 89.083 229 19 3 8 232 582932306 582932532 4.180000e-71 279
25 TraesCS4D01G329600 chr7D 89.234 2155 175 21 3363 5471 539949797 539951940 0.000000e+00 2641
26 TraesCS4D01G329600 chr7D 86.122 2068 216 43 705 2730 539944237 539946275 0.000000e+00 2163
27 TraesCS4D01G329600 chr7D 88.867 512 50 4 2788 3297 539949290 539949796 1.680000e-174 623
28 TraesCS4D01G329600 chr7D 86.798 356 42 3 705 1058 539943770 539944122 5.150000e-105 392
29 TraesCS4D01G329600 chr7D 89.083 229 19 4 8 232 539944363 539944589 4.180000e-71 279
30 TraesCS4D01G329600 chr7A 88.666 1844 135 32 3633 5440 621312179 621313984 0.000000e+00 2180
31 TraesCS4D01G329600 chr7A 85.547 1280 137 24 1545 2786 621307316 621308585 0.000000e+00 1295
32 TraesCS4D01G329600 chr7A 88.725 816 81 8 2788 3599 621311375 621312183 0.000000e+00 987
33 TraesCS4D01G329600 chr7A 90.456 482 38 6 714 1193 621306230 621306705 3.600000e-176 628
34 TraesCS4D01G329600 chr7A 85.139 323 28 10 1204 1526 621306691 621306993 4.120000e-81 313
35 TraesCS4D01G329600 chr7A 90.830 229 15 4 8 232 621306346 621306572 8.920000e-78 302
36 TraesCS4D01G329600 chr5A 78.429 853 149 23 3975 4820 669740996 669741820 1.750000e-144 523
37 TraesCS4D01G329600 chr5A 83.000 200 34 0 2794 2993 670081701 670081900 1.210000e-41 182
38 TraesCS4D01G329600 chr6A 87.613 331 31 9 378 704 580676206 580675882 5.180000e-100 375
39 TraesCS4D01G329600 chr3A 87.059 340 34 10 376 711 556954753 556955086 5.180000e-100 375
40 TraesCS4D01G329600 chr2D 87.048 332 32 10 378 704 259061871 259062196 1.120000e-96 364
41 TraesCS4D01G329600 chr6D 85.549 346 41 8 369 710 457507281 457506941 2.430000e-93 353
42 TraesCS4D01G329600 chr1A 85.882 340 38 9 378 713 111396696 111396363 2.430000e-93 353


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G329600 chr4D 487871763 487877241 5478 False 10118.000000 10118 100.000000 1 5479 1 chr4D.!!$F2 5478
1 TraesCS4D01G329600 chr4D 488034129 488035234 1105 False 647.000000 647 77.778000 3502 4595 1 chr4D.!!$F4 1093
2 TraesCS4D01G329600 chr4D 488171711 488173890 2179 False 520.500000 754 76.506000 2788 4958 2 chr4D.!!$F5 2170
3 TraesCS4D01G329600 chr4B 623783147 623788517 5370 False 7659.000000 7659 92.568000 136 5471 1 chr4B.!!$F2 5335
4 TraesCS4D01G329600 chr4B 623642151 623647722 5571 False 2086.000000 4593 90.327500 1 5471 4 chr4B.!!$F4 5470
5 TraesCS4D01G329600 chr4B 623954939 623955635 696 True 311.000000 311 75.813000 2788 3453 1 chr4B.!!$R1 665
6 TraesCS4D01G329600 chr4B 623654666 623655812 1146 False 265.000000 265 72.124000 2851 3982 1 chr4B.!!$F1 1131
7 TraesCS4D01G329600 chr7B 582937018 582939665 2647 False 1667.000000 2678 89.765000 2788 5471 2 chr7B.!!$F3 2683
8 TraesCS4D01G329600 chr7B 582931710 582934250 2540 False 780.250000 2071 86.826750 8 2760 4 chr7B.!!$F2 2752
9 TraesCS4D01G329600 chr7B 583174129 583175477 1348 False 387.500000 446 80.627500 816 1891 2 chr7B.!!$F4 1075
10 TraesCS4D01G329600 chr7D 539949290 539951940 2650 False 1632.000000 2641 89.050500 2788 5471 2 chr7D.!!$F2 2683
11 TraesCS4D01G329600 chr7D 539943770 539946275 2505 False 944.666667 2163 87.334333 8 2730 3 chr7D.!!$F1 2722
12 TraesCS4D01G329600 chr7A 621306230 621313984 7754 False 950.833333 2180 88.227167 8 5440 6 chr7A.!!$F1 5432
13 TraesCS4D01G329600 chr5A 669740996 669741820 824 False 523.000000 523 78.429000 3975 4820 1 chr5A.!!$F1 845

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
154 283 4.713792 ATCTGGTTTCCCATAGTGATCC 57.286 45.455 0.00 0.0 40.90 3.36 F
1212 1388 1.917872 TTTTGAGGAATTCCCCACCG 58.082 50.000 21.22 0.0 36.42 4.94 F
2227 2999 2.191128 ACCTGCCATCAAAGTGAGAC 57.809 50.000 0.00 0.0 0.00 3.36 F
3028 6632 3.004419 CCATGCACATAGCCTCTCAATTG 59.996 47.826 0.00 0.0 44.83 2.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1415 1866 1.545582 ACTCCCATGATTTTGTTGGCG 59.454 47.619 0.0 0.0 0.00 5.69 R
2797 6394 0.032403 TGCCACAAACTGCAAGATGC 59.968 50.000 0.0 0.0 45.29 3.91 R
3358 6996 0.171903 ATGCGGTCAGAAATTGCAGC 59.828 50.000 0.0 0.0 39.17 5.25 R
4844 8552 0.102481 CTCCTCGTTACCATCCCACG 59.898 60.000 0.0 0.0 35.18 4.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
154 283 4.713792 ATCTGGTTTCCCATAGTGATCC 57.286 45.455 0.00 0.00 40.90 3.36
265 394 7.150640 TGGCGCAAAATCATTTATTATGCATA 58.849 30.769 10.83 1.16 0.00 3.14
396 526 5.744171 ACTTGGGAAAATTTTGTTTCTGCT 58.256 33.333 8.47 0.00 37.60 4.24
432 562 4.745620 GCTAATTTCCTTACGCCACTCTAG 59.254 45.833 0.00 0.00 0.00 2.43
434 564 5.615925 AATTTCCTTACGCCACTCTAGAT 57.384 39.130 0.00 0.00 0.00 1.98
454 584 6.849588 AGATTTTGACATTTCACTTTTGCC 57.150 33.333 0.00 0.00 0.00 4.52
560 690 5.105554 TGTCAAAAGCTAAGAGTGGCAAAAA 60.106 36.000 0.00 0.00 32.62 1.94
613 747 5.918426 ATGGCAATTGTGATACATTGTCA 57.082 34.783 7.40 1.93 36.48 3.58
639 773 6.749923 ATCTAAGAGTGGCAAGAATGAAAC 57.250 37.500 0.00 0.00 0.00 2.78
656 790 9.918630 AGAATGAAACATCAAATTTTAGAGTGG 57.081 29.630 0.00 0.00 0.00 4.00
695 829 7.653311 GTCAAAATCTAGAGTGGCAAAAACAAT 59.347 33.333 0.00 0.00 0.00 2.71
746 880 7.103641 TGTAAATCTTTCTCCAGTATGTGTCC 58.896 38.462 0.00 0.00 0.00 4.02
803 938 7.333269 CGCAAATATTTATTTAATGCGCACAA 58.667 30.769 14.90 7.31 40.87 3.33
812 947 6.907206 ATTTAATGCGCACAAAATATTGCT 57.093 29.167 23.20 6.14 40.34 3.91
919 1092 9.908152 GTTAATTTTGTATGGTTTAGCTTGACT 57.092 29.630 0.00 0.00 0.00 3.41
987 1163 6.291648 TGCCCATAGTGATCTTCATCTATC 57.708 41.667 0.00 0.00 0.00 2.08
1183 1359 5.138758 AGATTAGTGGGTTATTTTCCCCC 57.861 43.478 0.00 0.00 44.00 5.40
1212 1388 1.917872 TTTTGAGGAATTCCCCACCG 58.082 50.000 21.22 0.00 36.42 4.94
1236 1412 8.458843 CCGTTCTTGGTCTTTTGATGTATTTAT 58.541 33.333 0.00 0.00 0.00 1.40
1288 1464 7.491682 GGTTCAGAATAACCATGCATAACAAT 58.508 34.615 0.00 0.00 46.85 2.71
1364 1815 8.567948 CAAACACATATATATGTTGGAAGGACC 58.432 37.037 23.03 0.00 43.99 4.46
1383 1834 3.890147 GACCAGAGACATTACCGGATAGT 59.110 47.826 9.46 0.00 0.00 2.12
1384 1835 5.057843 ACCAGAGACATTACCGGATAGTA 57.942 43.478 9.46 0.00 0.00 1.82
1385 1836 5.642165 ACCAGAGACATTACCGGATAGTAT 58.358 41.667 9.46 0.00 0.00 2.12
1386 1837 5.711036 ACCAGAGACATTACCGGATAGTATC 59.289 44.000 9.46 8.01 0.00 2.24
1415 1866 4.896482 ACACTCCTCCTATCATAGTTGGAC 59.104 45.833 0.17 0.00 0.00 4.02
1813 2582 8.718102 TCCAAGATTAGCAAATAGTACACTTC 57.282 34.615 0.00 0.00 0.00 3.01
1821 2590 7.241042 AGCAAATAGTACACTTCTTAGGTGA 57.759 36.000 0.00 0.00 38.01 4.02
2008 2778 6.291067 TCACAAATATGAATGCGAGATGAC 57.709 37.500 0.00 0.00 0.00 3.06
2033 2803 5.352643 AAACAACTACAACACTAATCGCC 57.647 39.130 0.00 0.00 0.00 5.54
2049 2819 5.668558 AATCGCCGACCTATTATGTTTTC 57.331 39.130 0.00 0.00 0.00 2.29
2096 2866 8.147704 TCGATAGGCACAATTATGAGTATTCAA 58.852 33.333 0.00 0.00 36.78 2.69
2153 2925 4.082245 CCAACAAAAGGAAACAGACACACT 60.082 41.667 0.00 0.00 0.00 3.55
2156 2928 4.396166 ACAAAAGGAAACAGACACACTCAG 59.604 41.667 0.00 0.00 0.00 3.35
2227 2999 2.191128 ACCTGCCATCAAAGTGAGAC 57.809 50.000 0.00 0.00 0.00 3.36
2236 3008 5.335897 GCCATCAAAGTGAGACAAATGCTAA 60.336 40.000 0.00 0.00 0.00 3.09
2457 3230 3.824133 TCTGAACATTAGCATGGATGGG 58.176 45.455 0.00 0.00 34.27 4.00
2629 3430 5.186942 TCGTTTCCCCATCGAAATTGATTA 58.813 37.500 0.00 0.00 34.41 1.75
2730 3532 8.736097 AACTATTTTGAAGAAAATACCCCCTT 57.264 30.769 0.00 0.00 41.22 3.95
2797 6394 4.732285 AGTTACGTCACTTGATTGCTTG 57.268 40.909 0.00 0.00 0.00 4.01
3028 6632 3.004419 CCATGCACATAGCCTCTCAATTG 59.996 47.826 0.00 0.00 44.83 2.32
3138 6748 3.838244 TCCTAAACATCCTTGGGATCG 57.162 47.619 0.00 0.00 40.98 3.69
3149 6759 3.888930 TCCTTGGGATCGAATTAAATGCC 59.111 43.478 0.00 3.81 34.22 4.40
3191 6805 6.664428 AACCATATTTATTTGCGGGCTAAT 57.336 33.333 5.71 5.71 0.00 1.73
3374 7014 2.642139 AATGCTGCAATTTCTGACCG 57.358 45.000 6.36 0.00 0.00 4.79
3414 7055 3.855689 ACCTTCTGCCAAATTTCATCG 57.144 42.857 0.00 0.00 0.00 3.84
3811 7496 8.995220 GGACGGTATTGTGATAATTATGCTTTA 58.005 33.333 1.78 0.00 0.00 1.85
3850 7552 6.814146 CCCACAGTAAAAGTGATCTTACTCTC 59.186 42.308 2.90 0.00 36.45 3.20
3889 7591 5.445964 AGAAAGTTTCTAACCCACACACAT 58.554 37.500 16.60 0.00 38.49 3.21
3931 7633 8.627403 CAAAGAGATAATTATGATGCAACTGGT 58.373 33.333 1.78 0.00 0.00 4.00
4040 7742 3.432749 CCCTGATGGACCTAGACAATGTG 60.433 52.174 0.00 0.00 35.39 3.21
4099 7803 6.817641 CCTTTTTGTATGCATTTCATAGCCAA 59.182 34.615 3.54 0.00 38.27 4.52
4138 7842 5.769484 AAATCTGACTACGTGGTCGATAT 57.231 39.130 26.38 17.99 38.91 1.63
4154 7859 8.709646 GTGGTCGATATAGGTGTATCATTTTTC 58.290 37.037 0.00 0.00 31.89 2.29
4476 8181 8.890718 CATTCACAGACATTAGATTCATTGACT 58.109 33.333 0.00 0.00 0.00 3.41
4493 8198 5.957771 TTGACTAGGATGGAAATAGCAGT 57.042 39.130 0.00 0.00 0.00 4.40
4503 8208 3.696051 TGGAAATAGCAGTCCAATCAAGC 59.304 43.478 0.00 0.00 41.02 4.01
4604 8310 5.130477 GGTCCTGGAGGTTGTATGAGATAAA 59.870 44.000 0.00 0.00 36.34 1.40
4607 8313 7.775561 GTCCTGGAGGTTGTATGAGATAAAATT 59.224 37.037 0.00 0.00 36.34 1.82
4711 8419 6.584488 TCACTTGTTTACCTAAAGCTACACA 58.416 36.000 0.00 0.00 0.00 3.72
4795 8503 8.141909 TCGAAGGAGTTATATGGAATAGTTGTG 58.858 37.037 0.00 0.00 28.50 3.33
4861 8570 2.195389 TCGTGGGATGGTAACGAGG 58.805 57.895 0.00 0.00 41.08 4.63
4869 8578 3.509184 GGGATGGTAACGAGGAGGTATAC 59.491 52.174 0.00 0.00 42.51 1.47
4888 8601 1.295423 GCACCCTAGGAACGCAAGA 59.705 57.895 11.48 0.00 43.62 3.02
4905 8618 5.934625 ACGCAAGAAGTCATTGTTCTTATCT 59.065 36.000 2.88 0.00 41.37 1.98
4973 8688 8.699130 ACTCTTTTCTCTTGAAATGAATTGGTT 58.301 29.630 7.95 0.00 42.11 3.67
4981 8696 7.648142 TCTTGAAATGAATTGGTTGTACACTC 58.352 34.615 0.00 0.00 0.00 3.51
4985 8700 3.064207 TGAATTGGTTGTACACTCGCTC 58.936 45.455 0.00 0.00 0.00 5.03
5029 8745 0.882927 GTGCCACGAAGCAACACCTA 60.883 55.000 5.72 0.00 46.19 3.08
5136 8854 1.109609 TTGCAACCATGTCAGCACAA 58.890 45.000 0.00 0.00 36.62 3.33
5199 8917 4.591321 TGAGAAGCCCCTCAACATTAAT 57.409 40.909 3.44 0.00 39.96 1.40
5200 8918 4.934356 TGAGAAGCCCCTCAACATTAATT 58.066 39.130 3.44 0.00 39.96 1.40
5201 8919 5.332743 TGAGAAGCCCCTCAACATTAATTT 58.667 37.500 3.44 0.00 39.96 1.82
5202 8920 5.779771 TGAGAAGCCCCTCAACATTAATTTT 59.220 36.000 3.44 0.00 39.96 1.82
5248 8970 6.394345 AGGAGGTTATTCCAAAGATTCAGT 57.606 37.500 0.00 0.00 39.84 3.41
5319 9041 7.291651 TCCCGGAGTTTCTAGACCATATTAATT 59.708 37.037 0.73 0.00 0.00 1.40
5360 9084 4.686091 TGCGAATTCAACACTAACTCTCTG 59.314 41.667 6.22 0.00 0.00 3.35
5408 9137 0.736636 CATTGATGCACACGCCATCT 59.263 50.000 0.00 0.00 37.32 2.90
5447 9186 1.568612 CGCCATCTTTGTGTCACGCT 61.569 55.000 0.00 0.00 0.00 5.07
5471 9210 0.249573 AGCTGTTGGCACATGTTTGC 60.250 50.000 0.00 0.00 44.79 3.68
5478 9217 3.963676 GCACATGTTTGCCAGTTCA 57.036 47.368 0.00 0.00 36.42 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
95 218 6.694411 TGTTTTGTGTCTTTCTCTAGTACGTC 59.306 38.462 0.00 0.00 0.00 4.34
374 504 6.986231 AGTAGCAGAAACAAAATTTTCCCAAG 59.014 34.615 0.00 0.00 36.31 3.61
396 526 9.223099 GTAAGGAAATTAGCAAAACCTACAGTA 57.777 33.333 0.00 0.00 0.00 2.74
432 562 6.036953 TGTGGCAAAAGTGAAATGTCAAAATC 59.963 34.615 0.00 0.00 34.87 2.17
434 564 5.121454 GTGTGGCAAAAGTGAAATGTCAAAA 59.879 36.000 0.00 0.00 34.87 2.44
523 653 8.969121 TTAGCTTTTGACAATGTATCACAATG 57.031 30.769 0.00 0.00 35.24 2.82
613 747 7.765695 TTCATTCTTGCCACTCTTAGATTTT 57.234 32.000 0.00 0.00 0.00 1.82
639 773 7.999679 TCCTTATGCCACTCTAAAATTTGATG 58.000 34.615 0.00 0.00 0.00 3.07
656 790 8.268850 TCTAGATTTTGACAGTTTCCTTATGC 57.731 34.615 0.00 0.00 0.00 3.14
735 869 2.277084 GGTTTAGCCGGACACATACTG 58.723 52.381 5.05 0.00 0.00 2.74
746 880 7.531716 TCTGTTAATTTTGTATGGTTTAGCCG 58.468 34.615 0.00 0.00 41.21 5.52
1014 1190 1.993370 GCAATTGCTCGTCGAAGTAGT 59.007 47.619 23.21 0.00 38.21 2.73
1149 1325 5.772004 ACCCACTAATCTATCTCACTCACT 58.228 41.667 0.00 0.00 0.00 3.41
1364 1815 8.740123 ATAGATACTATCCGGTAATGTCTCTG 57.260 38.462 0.00 0.00 0.00 3.35
1415 1866 1.545582 ACTCCCATGATTTTGTTGGCG 59.454 47.619 0.00 0.00 0.00 5.69
1632 2400 4.222336 TGGACCATGGACAAAATCTTTGT 58.778 39.130 21.47 4.50 34.97 2.83
1787 2556 8.723942 AAGTGTACTATTTGCTAATCTTGGAG 57.276 34.615 0.00 0.00 0.00 3.86
1798 2567 7.900782 TTCACCTAAGAAGTGTACTATTTGC 57.099 36.000 0.00 0.00 36.58 3.68
1962 2732 8.236586 GTGAACATGTCAAAATAGCTACAATGA 58.763 33.333 0.00 0.00 38.23 2.57
2008 2778 7.013529 GGCGATTAGTGTTGTAGTTGTTTAAG 58.986 38.462 0.00 0.00 0.00 1.85
2030 2800 2.348218 GCGAAAACATAATAGGTCGGCG 60.348 50.000 0.00 0.00 0.00 6.46
2033 2803 6.255215 ACATTTGCGAAAACATAATAGGTCG 58.745 36.000 0.00 0.00 0.00 4.79
2049 2819 6.820459 TCGACATAATATCATGACATTTGCG 58.180 36.000 4.21 10.34 0.00 4.85
2134 2906 4.731773 GCTGAGTGTGTCTGTTTCCTTTTG 60.732 45.833 0.00 0.00 0.00 2.44
2153 2925 6.121590 TCACAATATCTATTTGGCTTGCTGA 58.878 36.000 0.00 0.00 0.00 4.26
2156 2928 9.748708 TTATTTCACAATATCTATTTGGCTTGC 57.251 29.630 0.00 0.00 0.00 4.01
2227 2999 7.254932 GGCTACCTCAGACTAAATTAGCATTTG 60.255 40.741 0.00 0.00 34.29 2.32
2236 3008 6.841755 ACTATGAAGGCTACCTCAGACTAAAT 59.158 38.462 0.00 0.00 44.33 1.40
2434 3207 5.073554 ACCCATCCATGCTAATGTTCAGATA 59.926 40.000 0.00 0.00 31.27 1.98
2797 6394 0.032403 TGCCACAAACTGCAAGATGC 59.968 50.000 0.00 0.00 45.29 3.91
2968 6565 1.546923 CATGCCAGCCAACTTGAATCA 59.453 47.619 0.00 0.00 0.00 2.57
3191 6805 5.034200 TCCTACTTTTCAAGGGGCATAGTA 58.966 41.667 0.00 0.00 33.40 1.82
3358 6996 0.171903 ATGCGGTCAGAAATTGCAGC 59.828 50.000 0.00 0.00 39.17 5.25
3361 6999 3.181497 ACATACATGCGGTCAGAAATTGC 60.181 43.478 0.00 0.00 0.00 3.56
3374 7014 7.495934 AGAAGGTTAACATCTACACATACATGC 59.504 37.037 8.10 0.00 0.00 4.06
3414 7055 7.546667 ACAAACATATGGATGAAATGCTTTGTC 59.453 33.333 14.67 0.00 34.05 3.18
3489 7136 6.338214 ACATGTAGATGTGCCTAGAGTATG 57.662 41.667 4.42 0.00 41.52 2.39
3594 7256 3.880490 ACGGTTTTTGAGTGCTGACATTA 59.120 39.130 0.00 0.00 0.00 1.90
3667 7336 4.503714 AGTTCAAGAAGGTGAGTTTCCA 57.496 40.909 0.00 0.00 0.00 3.53
3676 7359 6.539103 GTCTCACACTTAAAGTTCAAGAAGGT 59.461 38.462 0.00 0.00 0.00 3.50
3730 7415 6.652481 CCATAGCGATCTGGATTAATCTGTTT 59.348 38.462 14.95 0.00 34.24 2.83
3811 7496 8.528044 TTTTACTGTGGGAAAGAGTAATGTTT 57.472 30.769 0.00 0.00 42.45 2.83
3814 7511 7.444183 TCACTTTTACTGTGGGAAAGAGTAATG 59.556 37.037 15.33 7.00 42.45 1.90
3931 7633 1.533625 GGCAGTCCATGTTGTAGCAA 58.466 50.000 0.00 0.00 0.00 3.91
4066 7768 9.334947 TGAAATGCATACAAAAAGGATGAAAAA 57.665 25.926 0.00 0.00 0.00 1.94
4099 7803 7.770897 AGTCAGATTTTCATAAGCGGAATAACT 59.229 33.333 0.00 0.00 0.00 2.24
4138 7842 9.747898 ATTAGGTTGTGAAAAATGATACACCTA 57.252 29.630 0.00 0.00 31.67 3.08
4476 8181 5.369404 TGATTGGACTGCTATTTCCATCCTA 59.631 40.000 0.00 0.00 41.65 2.94
4493 8198 2.026262 GGGTAGGTCTTGCTTGATTGGA 60.026 50.000 0.00 0.00 0.00 3.53
4503 8208 6.070995 TCAGTAACTAACATGGGTAGGTCTTG 60.071 42.308 0.00 0.29 0.00 3.02
4711 8419 4.260170 TGTTGCAAGCAAAGGTTTTCATT 58.740 34.783 9.32 0.00 37.70 2.57
4844 8552 0.102481 CTCCTCGTTACCATCCCACG 59.898 60.000 0.00 0.00 35.18 4.94
4861 8570 2.283145 TCCTAGGGTGCGTATACCTC 57.717 55.000 9.46 0.00 40.66 3.85
4869 8578 2.047655 TTGCGTTCCTAGGGTGCG 60.048 61.111 9.46 12.04 0.00 5.34
4905 8618 4.766375 CCTGGCGAACCTAGATAAGAAAA 58.234 43.478 0.00 0.00 36.63 2.29
4997 8712 4.700268 TCGTGGCACGTAAGAGTAATTA 57.300 40.909 35.65 12.44 43.14 1.40
5136 8854 2.309528 TGTGAGAACTTCAGCAACGT 57.690 45.000 0.00 0.00 36.21 3.99
5201 8919 5.993748 AAGGTCAAGGAACTGAACAAAAA 57.006 34.783 0.00 0.00 40.86 1.94
5202 8920 5.993748 AAAGGTCAAGGAACTGAACAAAA 57.006 34.783 0.00 0.00 40.86 2.44
5237 8959 8.742777 TGGAATTAGGATCAAACTGAATCTTTG 58.257 33.333 0.00 0.00 0.00 2.77
5248 8970 7.014518 CCATGTATTGCTGGAATTAGGATCAAA 59.985 37.037 0.00 0.00 34.24 2.69
5319 9041 3.857052 CGCAAGAAAGACCTATACACCA 58.143 45.455 0.00 0.00 43.02 4.17
5335 9059 5.406780 AGAGAGTTAGTGTTGAATTCGCAAG 59.593 40.000 0.04 0.00 0.00 4.01
5447 9186 1.898094 ATGTGCCAACAGCTTCGCA 60.898 52.632 0.00 0.00 44.23 5.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.