Multiple sequence alignment - TraesCS4D01G329100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G329100 chr4D 100.000 3917 0 0 1 3917 487346684 487342768 0.000000e+00 7234.0
1 TraesCS4D01G329100 chr4D 88.809 2779 197 62 397 3099 487291717 487288977 0.000000e+00 3304.0
2 TraesCS4D01G329100 chr4D 87.874 1303 89 30 689 1934 487121177 487119887 0.000000e+00 1467.0
3 TraesCS4D01G329100 chr4D 87.011 1278 100 37 689 1948 487230407 487229178 0.000000e+00 1380.0
4 TraesCS4D01G329100 chr4D 88.285 1067 67 31 2501 3530 487119846 487118801 0.000000e+00 1225.0
5 TraesCS4D01G329100 chr4D 87.614 880 86 11 2953 3817 487295400 487294529 0.000000e+00 1000.0
6 TraesCS4D01G329100 chr4D 94.251 574 29 2 3075 3646 487228673 487228102 0.000000e+00 874.0
7 TraesCS4D01G329100 chr4D 92.982 570 34 5 3080 3648 487288867 487288303 0.000000e+00 826.0
8 TraesCS4D01G329100 chr4D 86.636 434 30 12 689 1101 487296620 487296194 4.610000e-124 455.0
9 TraesCS4D01G329100 chr4D 91.506 259 13 3 1712 1962 487296088 487295831 8.060000e-92 348.0
10 TraesCS4D01G329100 chr4D 90.533 169 10 3 476 640 487159786 487159620 6.590000e-53 219.0
11 TraesCS4D01G329100 chr4D 93.827 81 3 2 601 681 487230526 487230448 1.910000e-23 121.0
12 TraesCS4D01G329100 chr4D 83.200 125 15 6 3656 3777 12500646 12500525 4.140000e-20 110.0
13 TraesCS4D01G329100 chr4B 92.206 2938 139 42 689 3568 622437929 622435024 0.000000e+00 4074.0
14 TraesCS4D01G329100 chr4B 90.863 2539 152 32 898 3392 622478641 622476139 0.000000e+00 3330.0
15 TraesCS4D01G329100 chr4B 84.711 1125 80 39 856 1932 622335114 622334034 0.000000e+00 1040.0
16 TraesCS4D01G329100 chr4B 88.492 504 8 14 440 901 622480281 622479786 7.350000e-157 564.0
17 TraesCS4D01G329100 chr4B 93.249 237 14 2 1712 1948 622615564 622615330 8.060000e-92 348.0
18 TraesCS4D01G329100 chr4B 78.060 433 59 16 1226 1622 622135775 622135343 1.410000e-59 241.0
19 TraesCS4D01G329100 chr4B 91.411 163 7 4 491 646 622439995 622439833 2.370000e-52 217.0
20 TraesCS4D01G329100 chrUn 92.069 2938 143 42 689 3568 60350122 60347217 0.000000e+00 4052.0
21 TraesCS4D01G329100 chrUn 91.209 1729 92 27 689 2369 60287597 60289313 0.000000e+00 2296.0
22 TraesCS4D01G329100 chrUn 93.276 1041 41 12 2618 3648 363200045 363201066 0.000000e+00 1507.0
23 TraesCS4D01G329100 chrUn 93.750 960 32 11 2618 3568 60289967 60290907 0.000000e+00 1415.0
24 TraesCS4D01G329100 chrUn 95.499 511 17 2 689 1193 60319934 60319424 0.000000e+00 811.0
25 TraesCS4D01G329100 chrUn 91.411 163 7 4 491 646 60285652 60285814 2.370000e-52 217.0
26 TraesCS4D01G329100 chrUn 91.411 163 7 4 491 646 60322000 60321838 2.370000e-52 217.0
27 TraesCS4D01G329100 chrUn 90.210 143 10 2 3779 3917 363201050 363201192 2.400000e-42 183.0
28 TraesCS4D01G329100 chrUn 90.210 143 10 2 3779 3917 453468875 453468733 2.400000e-42 183.0
29 TraesCS4D01G329100 chrUn 90.210 143 9 3 3779 3917 60277864 60278005 8.650000e-42 182.0
30 TraesCS4D01G329100 chrUn 90.210 143 9 3 3779 3917 60329372 60329231 8.650000e-42 182.0
31 TraesCS4D01G329100 chrUn 90.210 143 9 3 3779 3917 60360640 60360499 8.650000e-42 182.0
32 TraesCS4D01G329100 chrUn 92.593 54 2 1 641 694 60287518 60287569 4.200000e-10 76.8
33 TraesCS4D01G329100 chrUn 92.593 54 2 1 641 694 60320013 60319962 4.200000e-10 76.8
34 TraesCS4D01G329100 chrUn 92.593 54 2 1 641 694 60350201 60350150 4.200000e-10 76.8
35 TraesCS4D01G329100 chr5A 86.794 1363 138 21 2309 3648 668769122 668770465 0.000000e+00 1482.0
36 TraesCS4D01G329100 chr5A 87.414 1311 97 32 689 1950 668581012 668579721 0.000000e+00 1445.0
37 TraesCS4D01G329100 chr5A 89.854 1094 78 19 2499 3576 668271129 668270053 0.000000e+00 1375.0
38 TraesCS4D01G329100 chr5A 89.649 1082 82 16 2501 3568 668579695 668578630 0.000000e+00 1351.0
39 TraesCS4D01G329100 chr5A 88.626 1143 83 22 847 1962 668226878 668225756 0.000000e+00 1347.0
40 TraesCS4D01G329100 chr5A 88.939 1103 71 20 2501 3576 668225706 668224628 0.000000e+00 1314.0
41 TraesCS4D01G329100 chr5A 85.818 1234 79 40 689 1877 668767230 668768412 0.000000e+00 1221.0
42 TraesCS4D01G329100 chr5A 88.462 988 61 15 986 1950 668272111 668271154 0.000000e+00 1144.0
43 TraesCS4D01G329100 chr5A 92.607 257 16 2 438 694 668274129 668273876 2.220000e-97 366.0
44 TraesCS4D01G329100 chr5A 85.185 189 28 0 207 395 369852741 369852553 1.110000e-45 195.0
45 TraesCS4D01G329100 chr5A 82.883 222 14 16 592 794 668227106 668226890 1.120000e-40 178.0
46 TraesCS4D01G329100 chr5A 88.811 143 12 2 3779 3917 668770449 668770591 5.200000e-39 172.0
47 TraesCS4D01G329100 chr5A 91.150 113 7 2 571 681 668581164 668581053 2.440000e-32 150.0
48 TraesCS4D01G329100 chr5A 90.351 114 6 4 3779 3887 668224612 668224499 1.130000e-30 145.0
49 TraesCS4D01G329100 chr5A 85.714 98 7 3 520 614 668761719 668761812 3.220000e-16 97.1
50 TraesCS4D01G329100 chr5A 92.754 69 2 2 612 680 668766734 668766799 3.220000e-16 97.1
51 TraesCS4D01G329100 chr2D 82.031 256 33 9 143 395 56871020 56870775 5.130000e-49 206.0
52 TraesCS4D01G329100 chr6D 81.467 259 38 7 143 400 305132652 305132403 1.850000e-48 204.0
53 TraesCS4D01G329100 chr6D 83.417 199 31 1 204 400 216847639 216847837 2.400000e-42 183.0
54 TraesCS4D01G329100 chr6D 83.854 192 29 2 203 393 49838534 49838344 8.650000e-42 182.0
55 TraesCS4D01G329100 chr3A 85.204 196 27 2 207 402 728045729 728045922 2.390000e-47 200.0
56 TraesCS4D01G329100 chr3A 81.746 126 20 3 3656 3781 98486920 98486798 6.920000e-18 102.0
57 TraesCS4D01G329100 chr3A 80.645 124 20 3 3656 3779 150062136 150062017 4.170000e-15 93.5
58 TraesCS4D01G329100 chr7A 85.106 188 28 0 207 394 1297002 1297189 3.990000e-45 193.0
59 TraesCS4D01G329100 chr7A 79.612 103 19 2 1986 2086 121934750 121934648 5.430000e-09 73.1
60 TraesCS4D01G329100 chr3B 84.615 195 27 2 206 399 733223434 733223626 1.440000e-44 191.0
61 TraesCS4D01G329100 chr3B 89.610 77 1 5 2185 2260 696325312 696325242 1.500000e-14 91.6
62 TraesCS4D01G329100 chr3B 100.000 28 0 0 2194 2221 825930566 825930593 7.000000e-03 52.8
63 TraesCS4D01G329100 chr7D 84.127 189 30 0 207 395 578067044 578067232 2.400000e-42 183.0
64 TraesCS4D01G329100 chr7D 83.721 86 11 3 3655 3739 593974502 593974585 1.170000e-10 78.7
65 TraesCS4D01G329100 chr7D 95.745 47 1 1 2221 2266 575588730 575588684 1.510000e-09 75.0
66 TraesCS4D01G329100 chr3D 81.319 182 21 9 1428 1601 24288663 24288487 6.830000e-28 135.0
67 TraesCS4D01G329100 chr3D 81.319 182 21 9 1428 1601 24335951 24335775 6.830000e-28 135.0
68 TraesCS4D01G329100 chr5B 87.356 87 10 1 3657 3743 671194093 671194178 8.960000e-17 99.0
69 TraesCS4D01G329100 chr5D 93.846 65 3 1 2196 2260 512302172 512302109 3.220000e-16 97.1
70 TraesCS4D01G329100 chr1D 90.278 72 3 1 2195 2262 348984031 348983960 1.500000e-14 91.6
71 TraesCS4D01G329100 chr1D 74.892 231 43 7 2282 2500 366483504 366483277 1.500000e-14 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G329100 chr4D 487342768 487346684 3916 True 7234.000000 7234 100.000000 1 3917 1 chr4D.!!$R3 3916
1 TraesCS4D01G329100 chr4D 487118801 487121177 2376 True 1346.000000 1467 88.079500 689 3530 2 chr4D.!!$R4 2841
2 TraesCS4D01G329100 chr4D 487288303 487296620 8317 True 1186.600000 3304 89.509400 397 3817 5 chr4D.!!$R6 3420
3 TraesCS4D01G329100 chr4D 487228102 487230526 2424 True 791.666667 1380 91.696333 601 3646 3 chr4D.!!$R5 3045
4 TraesCS4D01G329100 chr4B 622435024 622439995 4971 True 2145.500000 4074 91.808500 491 3568 2 chr4B.!!$R4 3077
5 TraesCS4D01G329100 chr4B 622476139 622480281 4142 True 1947.000000 3330 89.677500 440 3392 2 chr4B.!!$R5 2952
6 TraesCS4D01G329100 chr4B 622334034 622335114 1080 True 1040.000000 1040 84.711000 856 1932 1 chr4B.!!$R2 1076
7 TraesCS4D01G329100 chrUn 60347217 60350201 2984 True 2064.400000 4052 92.331000 641 3568 2 chrUn.!!$R5 2927
8 TraesCS4D01G329100 chrUn 60285652 60290907 5255 False 1001.200000 2296 92.240750 491 3568 4 chrUn.!!$F2 3077
9 TraesCS4D01G329100 chrUn 363200045 363201192 1147 False 845.000000 1507 91.743000 2618 3917 2 chrUn.!!$F3 1299
10 TraesCS4D01G329100 chrUn 60319424 60322000 2576 True 368.266667 811 93.167667 491 1193 3 chrUn.!!$R4 702
11 TraesCS4D01G329100 chr5A 668578630 668581164 2534 True 982.000000 1445 89.404333 571 3568 3 chr5A.!!$R4 2997
12 TraesCS4D01G329100 chr5A 668270053 668274129 4076 True 961.666667 1375 90.307667 438 3576 3 chr5A.!!$R3 3138
13 TraesCS4D01G329100 chr5A 668224499 668227106 2607 True 746.000000 1347 87.699750 592 3887 4 chr5A.!!$R2 3295
14 TraesCS4D01G329100 chr5A 668766734 668770591 3857 False 743.025000 1482 88.544250 612 3917 4 chr5A.!!$F2 3305

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
381 382 0.034896 CAAGTTCTAGCACCACCGGT 59.965 55.0 0.0 0.0 35.62 5.28 F
1139 10608 0.953003 AGCGACCTCCTATTCTACGC 59.047 55.0 0.0 0.0 43.84 4.42 F
1633 11144 0.101040 CAAGGTGTGTGTGGCAACTG 59.899 55.0 0.0 0.0 33.65 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1633 11144 0.109597 CAGGACAAATGCGAGTTGCC 60.110 55.0 0.0 0.0 45.6 4.52 R
2457 12378 0.167251 CGATGTTTGTACGGTTGGGC 59.833 55.0 0.0 0.0 0.0 5.36 R
3214 13746 1.216122 CCCAACCAAATGCAACAACG 58.784 50.0 0.0 0.0 0.0 4.10 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 4.446371 AGTTATCTGTAGCACATGAAGGC 58.554 43.478 0.00 0.00 0.00 4.35
24 25 2.391616 TCTGTAGCACATGAAGGCTG 57.608 50.000 17.32 0.00 41.25 4.85
25 26 1.625315 TCTGTAGCACATGAAGGCTGT 59.375 47.619 17.32 0.49 41.25 4.40
26 27 2.831526 TCTGTAGCACATGAAGGCTGTA 59.168 45.455 17.32 8.27 41.25 2.74
28 29 2.280628 GTAGCACATGAAGGCTGTACC 58.719 52.381 17.32 3.94 41.25 3.34
29 30 0.391661 AGCACATGAAGGCTGTACCG 60.392 55.000 0.00 0.00 46.52 4.02
30 31 0.391130 GCACATGAAGGCTGTACCGA 60.391 55.000 0.00 0.00 46.52 4.69
34 35 1.138859 CATGAAGGCTGTACCGATGGA 59.861 52.381 0.00 0.00 46.52 3.41
35 36 0.535335 TGAAGGCTGTACCGATGGAC 59.465 55.000 0.00 0.00 46.52 4.02
37 38 0.537188 AAGGCTGTACCGATGGACTG 59.463 55.000 0.00 0.00 46.52 3.51
39 40 1.521681 GCTGTACCGATGGACTGGC 60.522 63.158 0.00 0.00 0.00 4.85
40 41 1.897423 CTGTACCGATGGACTGGCA 59.103 57.895 0.00 0.00 0.00 4.92
41 42 0.249120 CTGTACCGATGGACTGGCAA 59.751 55.000 0.00 0.00 0.00 4.52
42 43 0.249120 TGTACCGATGGACTGGCAAG 59.751 55.000 0.00 0.00 0.00 4.01
43 44 0.462047 GTACCGATGGACTGGCAAGG 60.462 60.000 0.00 0.00 0.00 3.61
44 45 0.616395 TACCGATGGACTGGCAAGGA 60.616 55.000 0.00 0.00 0.00 3.36
46 47 1.450312 CGATGGACTGGCAAGGACC 60.450 63.158 0.00 0.00 0.00 4.46
47 48 1.450312 GATGGACTGGCAAGGACCG 60.450 63.158 0.00 0.00 0.00 4.79
49 50 1.488705 ATGGACTGGCAAGGACCGAA 61.489 55.000 0.00 0.00 0.00 4.30
52 53 1.534729 GACTGGCAAGGACCGAATTT 58.465 50.000 0.00 0.00 0.00 1.82
53 54 1.200020 GACTGGCAAGGACCGAATTTG 59.800 52.381 0.00 0.00 0.00 2.32
54 55 1.247567 CTGGCAAGGACCGAATTTGT 58.752 50.000 0.00 0.00 0.00 2.83
55 56 0.958091 TGGCAAGGACCGAATTTGTG 59.042 50.000 0.00 0.00 0.00 3.33
56 57 1.243902 GGCAAGGACCGAATTTGTGA 58.756 50.000 0.00 0.00 0.00 3.58
57 58 1.818674 GGCAAGGACCGAATTTGTGAT 59.181 47.619 0.00 0.00 0.00 3.06
58 59 3.013921 GGCAAGGACCGAATTTGTGATA 58.986 45.455 0.00 0.00 0.00 2.15
59 60 3.065371 GGCAAGGACCGAATTTGTGATAG 59.935 47.826 0.00 0.00 0.00 2.08
60 61 3.487544 GCAAGGACCGAATTTGTGATAGC 60.488 47.826 0.00 0.00 0.00 2.97
61 62 3.914426 AGGACCGAATTTGTGATAGCT 57.086 42.857 0.00 0.00 0.00 3.32
62 63 5.116180 CAAGGACCGAATTTGTGATAGCTA 58.884 41.667 0.00 0.00 0.00 3.32
64 65 6.665992 AGGACCGAATTTGTGATAGCTATA 57.334 37.500 6.13 0.00 0.00 1.31
66 67 6.041637 AGGACCGAATTTGTGATAGCTATACA 59.958 38.462 6.13 8.78 0.00 2.29
68 69 7.063544 GGACCGAATTTGTGATAGCTATACATC 59.936 40.741 6.13 0.00 0.00 3.06
69 70 6.586463 ACCGAATTTGTGATAGCTATACATCG 59.414 38.462 6.13 14.99 0.00 3.84
70 71 6.454318 CCGAATTTGTGATAGCTATACATCGC 60.454 42.308 6.13 3.44 33.28 4.58
72 73 6.957984 ATTTGTGATAGCTATACATCGCTG 57.042 37.500 6.13 0.00 37.05 5.18
73 74 5.705609 TTGTGATAGCTATACATCGCTGA 57.294 39.130 6.13 0.00 37.05 4.26
74 75 5.705609 TGTGATAGCTATACATCGCTGAA 57.294 39.130 6.13 0.00 37.05 3.02
76 77 6.325596 TGTGATAGCTATACATCGCTGAATC 58.674 40.000 6.13 0.00 37.05 2.52
77 78 5.453909 GTGATAGCTATACATCGCTGAATCG 59.546 44.000 6.13 0.00 37.05 3.34
78 79 5.354234 TGATAGCTATACATCGCTGAATCGA 59.646 40.000 6.13 0.00 43.09 3.59
79 80 4.090138 AGCTATACATCGCTGAATCGAG 57.910 45.455 0.00 0.00 42.14 4.04
80 81 3.753797 AGCTATACATCGCTGAATCGAGA 59.246 43.478 0.00 0.00 42.14 4.04
81 82 4.216472 AGCTATACATCGCTGAATCGAGAA 59.784 41.667 0.00 0.00 42.14 2.87
82 83 5.098893 GCTATACATCGCTGAATCGAGAAT 58.901 41.667 0.00 0.00 42.14 2.40
99 100 4.104066 GAGAATCGGAGTACTCGTTTTCC 58.896 47.826 16.56 1.66 0.00 3.13
100 101 3.762823 AGAATCGGAGTACTCGTTTTCCT 59.237 43.478 16.56 6.64 0.00 3.36
101 102 4.220163 AGAATCGGAGTACTCGTTTTCCTT 59.780 41.667 16.56 3.48 0.00 3.36
102 103 3.293311 TCGGAGTACTCGTTTTCCTTG 57.707 47.619 16.56 0.00 0.00 3.61
103 104 2.624838 TCGGAGTACTCGTTTTCCTTGT 59.375 45.455 16.56 0.00 0.00 3.16
104 105 3.068590 TCGGAGTACTCGTTTTCCTTGTT 59.931 43.478 16.56 0.00 0.00 2.83
105 106 4.278170 TCGGAGTACTCGTTTTCCTTGTTA 59.722 41.667 16.56 0.00 0.00 2.41
106 107 5.047802 TCGGAGTACTCGTTTTCCTTGTTAT 60.048 40.000 16.56 0.00 0.00 1.89
107 108 5.636543 CGGAGTACTCGTTTTCCTTGTTATT 59.363 40.000 16.56 0.00 0.00 1.40
110 111 8.347771 GGAGTACTCGTTTTCCTTGTTATTTTT 58.652 33.333 16.56 0.00 0.00 1.94
126 127 0.825840 TTTTTCCTTGTCGGCAGGGG 60.826 55.000 19.05 11.41 41.66 4.79
127 128 3.860930 TTTCCTTGTCGGCAGGGGC 62.861 63.158 19.05 0.00 41.66 5.80
129 130 4.351054 CCTTGTCGGCAGGGGCTT 62.351 66.667 10.92 0.00 38.11 4.35
132 133 1.456705 TTGTCGGCAGGGGCTTTTT 60.457 52.632 0.00 0.00 40.87 1.94
166 167 5.828299 AAAAAGTCGAGATGGTTTTCACA 57.172 34.783 0.00 0.00 0.00 3.58
167 168 5.828299 AAAAGTCGAGATGGTTTTCACAA 57.172 34.783 0.00 0.00 0.00 3.33
168 169 5.828299 AAAGTCGAGATGGTTTTCACAAA 57.172 34.783 0.00 0.00 0.00 2.83
169 170 5.828299 AAGTCGAGATGGTTTTCACAAAA 57.172 34.783 0.00 0.00 0.00 2.44
190 191 0.909623 ATAGGCCATACCCATACGCC 59.090 55.000 5.01 0.00 40.58 5.68
193 194 2.754375 CCATACCCATACGCCCCC 59.246 66.667 0.00 0.00 0.00 5.40
194 195 1.846124 CCATACCCATACGCCCCCT 60.846 63.158 0.00 0.00 0.00 4.79
196 197 1.538135 ATACCCATACGCCCCCTCC 60.538 63.158 0.00 0.00 0.00 4.30
197 198 2.335134 ATACCCATACGCCCCCTCCA 62.335 60.000 0.00 0.00 0.00 3.86
198 199 2.335134 TACCCATACGCCCCCTCCAT 62.335 60.000 0.00 0.00 0.00 3.41
199 200 2.431683 CCATACGCCCCCTCCATG 59.568 66.667 0.00 0.00 0.00 3.66
201 202 1.071471 CATACGCCCCCTCCATGTC 59.929 63.158 0.00 0.00 0.00 3.06
202 203 1.074471 ATACGCCCCCTCCATGTCT 60.074 57.895 0.00 0.00 0.00 3.41
203 204 0.694444 ATACGCCCCCTCCATGTCTT 60.694 55.000 0.00 0.00 0.00 3.01
204 205 1.622607 TACGCCCCCTCCATGTCTTG 61.623 60.000 0.00 0.00 0.00 3.02
205 206 2.971598 CGCCCCCTCCATGTCTTGT 61.972 63.158 0.00 0.00 0.00 3.16
206 207 1.622607 CGCCCCCTCCATGTCTTGTA 61.623 60.000 0.00 0.00 0.00 2.41
207 208 0.181350 GCCCCCTCCATGTCTTGTAG 59.819 60.000 0.00 0.00 0.00 2.74
208 209 1.584724 CCCCCTCCATGTCTTGTAGT 58.415 55.000 0.00 0.00 0.00 2.73
209 210 1.486726 CCCCCTCCATGTCTTGTAGTC 59.513 57.143 0.00 0.00 0.00 2.59
211 212 1.471676 CCCTCCATGTCTTGTAGTCGC 60.472 57.143 0.00 0.00 0.00 5.19
212 213 1.478510 CCTCCATGTCTTGTAGTCGCT 59.521 52.381 0.00 0.00 0.00 4.93
213 214 2.534298 CTCCATGTCTTGTAGTCGCTG 58.466 52.381 0.00 0.00 0.00 5.18
215 216 2.094700 TCCATGTCTTGTAGTCGCTGAC 60.095 50.000 0.00 1.15 0.00 3.51
217 218 2.706555 TGTCTTGTAGTCGCTGACAG 57.293 50.000 10.52 0.00 34.60 3.51
218 219 1.335964 TGTCTTGTAGTCGCTGACAGC 60.336 52.381 17.84 17.84 38.02 4.40
247 248 2.258591 CACGCTGGCACGTCTAGT 59.741 61.111 11.22 0.00 46.34 2.57
248 249 1.801913 CACGCTGGCACGTCTAGTC 60.802 63.158 11.22 0.00 46.34 2.59
251 252 1.807573 GCTGGCACGTCTAGTCAGC 60.808 63.158 14.16 14.16 41.42 4.26
252 253 1.886585 CTGGCACGTCTAGTCAGCT 59.113 57.895 0.00 0.00 0.00 4.24
253 254 0.457509 CTGGCACGTCTAGTCAGCTG 60.458 60.000 7.63 7.63 0.00 4.24
254 255 1.807573 GGCACGTCTAGTCAGCTGC 60.808 63.158 9.47 4.26 0.00 5.25
256 257 0.800300 GCACGTCTAGTCAGCTGCTC 60.800 60.000 9.47 4.66 0.00 4.26
257 258 0.522286 CACGTCTAGTCAGCTGCTCG 60.522 60.000 9.47 11.61 0.00 5.03
260 261 2.105930 CTAGTCAGCTGCTCGGGC 59.894 66.667 9.47 0.00 39.26 6.13
261 262 3.764810 CTAGTCAGCTGCTCGGGCG 62.765 68.421 9.47 0.00 42.25 6.13
263 264 4.129737 GTCAGCTGCTCGGGCGTA 62.130 66.667 9.47 0.00 42.25 4.42
266 267 4.436998 AGCTGCTCGGGCGTACAC 62.437 66.667 1.14 0.00 42.25 2.90
267 268 4.735132 GCTGCTCGGGCGTACACA 62.735 66.667 1.14 0.00 42.25 3.72
268 269 2.048597 CTGCTCGGGCGTACACAA 60.049 61.111 1.14 0.00 42.25 3.33
270 271 1.897398 CTGCTCGGGCGTACACAAAC 61.897 60.000 1.14 0.00 42.25 2.93
271 272 3.007070 GCTCGGGCGTACACAAACG 62.007 63.158 0.00 0.00 45.58 3.60
273 274 1.882682 CTCGGGCGTACACAAACGTG 61.883 60.000 0.00 0.00 44.64 4.49
274 275 1.950130 CGGGCGTACACAAACGTGA 60.950 57.895 0.00 0.00 44.64 4.35
276 277 0.869730 GGGCGTACACAAACGTGATT 59.130 50.000 0.00 0.00 44.64 2.57
277 278 1.264826 GGGCGTACACAAACGTGATTT 59.735 47.619 0.00 0.00 44.64 2.17
285 286 2.672188 CAAACGTGATTTGCACCGTA 57.328 45.000 0.00 0.00 44.85 4.02
286 287 3.196007 CAAACGTGATTTGCACCGTAT 57.804 42.857 0.00 0.00 44.85 3.06
287 288 3.560503 CAAACGTGATTTGCACCGTATT 58.439 40.909 0.00 0.00 44.85 1.89
289 290 3.196007 ACGTGATTTGCACCGTATTTG 57.804 42.857 0.00 0.00 44.85 2.32
290 291 1.910819 CGTGATTTGCACCGTATTTGC 59.089 47.619 0.00 0.00 44.85 3.68
294 295 4.050955 TGCACCGTATTTGCACGT 57.949 50.000 0.00 0.00 45.06 4.49
296 297 0.236187 TGCACCGTATTTGCACGTTC 59.764 50.000 0.00 0.00 45.06 3.95
297 298 0.787908 GCACCGTATTTGCACGTTCG 60.788 55.000 0.00 0.00 40.31 3.95
298 299 0.785378 CACCGTATTTGCACGTTCGA 59.215 50.000 0.00 0.00 40.31 3.71
299 300 1.065358 ACCGTATTTGCACGTTCGAG 58.935 50.000 0.00 0.00 40.31 4.04
300 301 0.247145 CCGTATTTGCACGTTCGAGC 60.247 55.000 7.58 7.58 40.31 5.03
301 302 0.247145 CGTATTTGCACGTTCGAGCC 60.247 55.000 11.40 0.00 37.16 4.70
303 304 1.195900 GTATTTGCACGTTCGAGCCAA 59.804 47.619 11.40 7.68 0.00 4.52
306 307 1.092921 TTGCACGTTCGAGCCAACTT 61.093 50.000 11.40 0.00 0.00 2.66
307 308 0.249531 TGCACGTTCGAGCCAACTTA 60.250 50.000 11.40 0.00 0.00 2.24
309 310 1.463444 GCACGTTCGAGCCAACTTATT 59.537 47.619 3.50 0.00 0.00 1.40
310 311 2.669434 GCACGTTCGAGCCAACTTATTA 59.331 45.455 3.50 0.00 0.00 0.98
311 312 3.483085 GCACGTTCGAGCCAACTTATTAC 60.483 47.826 3.50 0.00 0.00 1.89
313 314 3.676646 ACGTTCGAGCCAACTTATTACAC 59.323 43.478 0.00 0.00 0.00 2.90
314 315 3.061697 CGTTCGAGCCAACTTATTACACC 59.938 47.826 0.00 0.00 0.00 4.16
316 317 3.857052 TCGAGCCAACTTATTACACCAG 58.143 45.455 0.00 0.00 0.00 4.00
319 320 4.454504 CGAGCCAACTTATTACACCAGTTT 59.545 41.667 0.00 0.00 0.00 2.66
320 321 5.640357 CGAGCCAACTTATTACACCAGTTTA 59.360 40.000 0.00 0.00 0.00 2.01
321 322 6.148150 CGAGCCAACTTATTACACCAGTTTAA 59.852 38.462 0.00 0.00 0.00 1.52
322 323 7.148306 CGAGCCAACTTATTACACCAGTTTAAT 60.148 37.037 0.00 0.00 0.00 1.40
324 325 7.450323 AGCCAACTTATTACACCAGTTTAATGT 59.550 33.333 0.51 0.00 0.00 2.71
325 326 8.732531 GCCAACTTATTACACCAGTTTAATGTA 58.267 33.333 0.51 0.00 0.00 2.29
329 330 8.899771 ACTTATTACACCAGTTTAATGTATGCC 58.100 33.333 0.51 0.00 0.00 4.40
331 332 6.503589 TTACACCAGTTTAATGTATGCCAC 57.496 37.500 0.00 0.00 0.00 5.01
332 333 4.402829 ACACCAGTTTAATGTATGCCACA 58.597 39.130 0.00 0.00 42.69 4.17
335 336 5.048083 CACCAGTTTAATGTATGCCACAAGT 60.048 40.000 0.00 0.00 41.55 3.16
337 338 6.092748 CCAGTTTAATGTATGCCACAAGTTC 58.907 40.000 0.00 0.00 41.55 3.01
338 339 6.071952 CCAGTTTAATGTATGCCACAAGTTCT 60.072 38.462 0.00 0.00 41.55 3.01
340 341 8.511321 CAGTTTAATGTATGCCACAAGTTCTAA 58.489 33.333 0.00 0.00 41.55 2.10
341 342 8.512138 AGTTTAATGTATGCCACAAGTTCTAAC 58.488 33.333 0.00 0.00 41.55 2.34
343 344 5.880054 ATGTATGCCACAAGTTCTAACAC 57.120 39.130 0.00 0.00 41.55 3.32
346 347 3.006112 TGCCACAAGTTCTAACACCAA 57.994 42.857 0.00 0.00 0.00 3.67
347 348 3.357203 TGCCACAAGTTCTAACACCAAA 58.643 40.909 0.00 0.00 0.00 3.28
348 349 3.380004 TGCCACAAGTTCTAACACCAAAG 59.620 43.478 0.00 0.00 0.00 2.77
349 350 3.380320 GCCACAAGTTCTAACACCAAAGT 59.620 43.478 0.00 0.00 0.00 2.66
364 365 5.398603 ACCAAAGTGATTGTTTGTGTCAA 57.601 34.783 0.00 0.00 37.32 3.18
365 366 5.410067 ACCAAAGTGATTGTTTGTGTCAAG 58.590 37.500 0.00 0.00 37.32 3.02
367 368 5.868801 CCAAAGTGATTGTTTGTGTCAAGTT 59.131 36.000 0.00 0.00 37.32 2.66
368 369 6.034898 CCAAAGTGATTGTTTGTGTCAAGTTC 59.965 38.462 0.00 0.00 37.32 3.01
369 370 6.515272 AAGTGATTGTTTGTGTCAAGTTCT 57.485 33.333 0.00 0.00 0.00 3.01
370 371 7.624360 AAGTGATTGTTTGTGTCAAGTTCTA 57.376 32.000 0.00 0.00 0.00 2.10
371 372 7.251704 AGTGATTGTTTGTGTCAAGTTCTAG 57.748 36.000 0.00 0.00 0.00 2.43
372 373 5.909610 GTGATTGTTTGTGTCAAGTTCTAGC 59.090 40.000 0.00 0.00 0.00 3.42
373 374 5.588246 TGATTGTTTGTGTCAAGTTCTAGCA 59.412 36.000 0.00 0.00 0.00 3.49
375 376 3.625764 TGTTTGTGTCAAGTTCTAGCACC 59.374 43.478 0.00 0.00 0.00 5.01
376 377 3.552132 TTGTGTCAAGTTCTAGCACCA 57.448 42.857 0.00 0.00 0.00 4.17
378 379 2.143925 GTGTCAAGTTCTAGCACCACC 58.856 52.381 0.00 0.00 0.00 4.61
381 382 0.034896 CAAGTTCTAGCACCACCGGT 59.965 55.000 0.00 0.00 35.62 5.28
392 393 2.467566 ACCACCGGTGTAATTGACTC 57.532 50.000 31.80 0.00 32.98 3.36
393 394 1.975680 ACCACCGGTGTAATTGACTCT 59.024 47.619 31.80 0.00 32.98 3.24
394 395 2.370849 ACCACCGGTGTAATTGACTCTT 59.629 45.455 31.80 0.00 32.98 2.85
395 396 3.579586 ACCACCGGTGTAATTGACTCTTA 59.420 43.478 31.80 0.00 32.98 2.10
396 397 4.040706 ACCACCGGTGTAATTGACTCTTAA 59.959 41.667 31.80 0.00 32.98 1.85
397 398 5.183228 CCACCGGTGTAATTGACTCTTAAT 58.817 41.667 31.80 0.00 0.00 1.40
398 399 5.646360 CCACCGGTGTAATTGACTCTTAATT 59.354 40.000 31.80 0.00 0.00 1.40
399 400 6.819649 CCACCGGTGTAATTGACTCTTAATTA 59.180 38.462 31.80 0.00 0.00 1.40
400 401 7.334921 CCACCGGTGTAATTGACTCTTAATTAA 59.665 37.037 31.80 0.00 33.28 1.40
401 402 8.723311 CACCGGTGTAATTGACTCTTAATTAAA 58.277 33.333 26.95 0.00 33.28 1.52
403 404 8.723311 CCGGTGTAATTGACTCTTAATTAAACA 58.277 33.333 10.99 0.00 38.83 2.83
420 4929 6.612247 TTAAACAAGAACAAGATCGCTGAA 57.388 33.333 5.02 0.00 0.00 3.02
465 4974 4.467084 CGGCCCCTACACACGCAT 62.467 66.667 0.00 0.00 0.00 4.73
488 4997 2.518949 AGCATGATTAAACAAAGCGCG 58.481 42.857 0.00 0.00 32.79 6.86
651 7031 2.441001 CCATTCCATTCTCAGGGTAGCT 59.559 50.000 0.00 0.00 0.00 3.32
926 8947 2.039613 AGGAGTTTGCTCAAGCTAGCTT 59.960 45.455 24.42 24.42 43.37 3.74
944 8965 5.109500 AGCTTGGAGAGAAATTAAGGGAG 57.891 43.478 0.00 0.00 0.00 4.30
1139 10608 0.953003 AGCGACCTCCTATTCTACGC 59.047 55.000 0.00 0.00 43.84 4.42
1141 10610 1.315690 CGACCTCCTATTCTACGCCA 58.684 55.000 0.00 0.00 0.00 5.69
1190 10659 2.203437 GGACTTGGTTGGGCCGTT 60.203 61.111 0.00 0.00 41.21 4.44
1191 10660 1.830847 GGACTTGGTTGGGCCGTTT 60.831 57.895 0.00 0.00 41.21 3.60
1192 10661 1.658114 GACTTGGTTGGGCCGTTTC 59.342 57.895 0.00 0.00 41.21 2.78
1480 10985 3.866582 CGGAGATGACCAGGGGCC 61.867 72.222 0.00 0.00 0.00 5.80
1633 11144 0.101040 CAAGGTGTGTGTGGCAACTG 59.899 55.000 0.00 0.00 33.65 3.16
1730 11320 8.873215 AGTATCAGTTAACATCTTTACATCGG 57.127 34.615 8.61 0.00 0.00 4.18
1994 11730 3.311596 GCGACGTTGCTCCCTAATTTTAT 59.688 43.478 20.81 0.00 0.00 1.40
2213 12013 1.133544 ACTACTCCCTCCGTCCCATAC 60.134 57.143 0.00 0.00 0.00 2.39
2215 12015 0.397254 ACTCCCTCCGTCCCATACTG 60.397 60.000 0.00 0.00 0.00 2.74
2373 12284 3.428870 CAGATAACACGAATCATACCGCC 59.571 47.826 0.00 0.00 0.00 6.13
2385 12296 2.094286 TCATACCGCCAAAAATTGCCAG 60.094 45.455 0.00 0.00 0.00 4.85
2395 12306 4.397417 CCAAAAATTGCCAGAAAAACACCA 59.603 37.500 0.00 0.00 0.00 4.17
2396 12307 5.331098 CAAAAATTGCCAGAAAAACACCAC 58.669 37.500 0.00 0.00 0.00 4.16
2474 12395 1.989706 AAGCCCAACCGTACAAACAT 58.010 45.000 0.00 0.00 0.00 2.71
2758 13086 5.897377 ATTTCCACTAATTTCTTGTCCGG 57.103 39.130 0.00 0.00 0.00 5.14
2997 13377 5.006746 GGTAATCATCCGTGAGATTTGTGTC 59.993 44.000 0.00 0.00 37.87 3.67
3059 13442 7.498570 TGCATGAATCAAGCATATGTAGTGTTA 59.501 33.333 9.22 0.00 33.12 2.41
3176 13691 5.528690 GCATGTATGTATCAATGTGGAGTGT 59.471 40.000 0.00 0.00 0.00 3.55
3214 13746 4.261197 GCCGACATGAAAAGATACCAATCC 60.261 45.833 0.00 0.00 31.98 3.01
3241 13779 1.868469 CATTTGGTTGGGCACTGTTG 58.132 50.000 0.00 0.00 0.00 3.33
3374 13916 2.027192 ACATATGAACAAGCCCTGACGT 60.027 45.455 10.38 0.00 0.00 4.34
3583 14129 3.999663 GCAAACTCTCAACTGCTATGTCT 59.000 43.478 0.00 0.00 0.00 3.41
3613 14159 8.523658 CGATAGACATTGAGGGAAATAGTGATA 58.476 37.037 0.00 0.00 39.76 2.15
3658 14205 9.472361 AATTGAATTTCATGTTCTTCTTCTGTG 57.528 29.630 0.00 0.00 0.00 3.66
3659 14206 6.441274 TGAATTTCATGTTCTTCTTCTGTGC 58.559 36.000 0.00 0.00 0.00 4.57
3660 14207 4.836125 TTTCATGTTCTTCTTCTGTGCC 57.164 40.909 0.00 0.00 0.00 5.01
3661 14208 2.783135 TCATGTTCTTCTTCTGTGCCC 58.217 47.619 0.00 0.00 0.00 5.36
3662 14209 1.815003 CATGTTCTTCTTCTGTGCCCC 59.185 52.381 0.00 0.00 0.00 5.80
3663 14210 1.140312 TGTTCTTCTTCTGTGCCCCT 58.860 50.000 0.00 0.00 0.00 4.79
3664 14211 1.494721 TGTTCTTCTTCTGTGCCCCTT 59.505 47.619 0.00 0.00 0.00 3.95
3665 14212 2.091885 TGTTCTTCTTCTGTGCCCCTTT 60.092 45.455 0.00 0.00 0.00 3.11
3666 14213 2.276732 TCTTCTTCTGTGCCCCTTTG 57.723 50.000 0.00 0.00 0.00 2.77
3667 14214 1.494721 TCTTCTTCTGTGCCCCTTTGT 59.505 47.619 0.00 0.00 0.00 2.83
3668 14215 2.708861 TCTTCTTCTGTGCCCCTTTGTA 59.291 45.455 0.00 0.00 0.00 2.41
3669 14216 3.330701 TCTTCTTCTGTGCCCCTTTGTAT 59.669 43.478 0.00 0.00 0.00 2.29
3670 14217 4.534500 TCTTCTTCTGTGCCCCTTTGTATA 59.466 41.667 0.00 0.00 0.00 1.47
3671 14218 5.191722 TCTTCTTCTGTGCCCCTTTGTATAT 59.808 40.000 0.00 0.00 0.00 0.86
3672 14219 5.036117 TCTTCTGTGCCCCTTTGTATATC 57.964 43.478 0.00 0.00 0.00 1.63
3673 14220 4.721776 TCTTCTGTGCCCCTTTGTATATCT 59.278 41.667 0.00 0.00 0.00 1.98
3674 14221 4.422073 TCTGTGCCCCTTTGTATATCTG 57.578 45.455 0.00 0.00 0.00 2.90
3675 14222 3.136443 TCTGTGCCCCTTTGTATATCTGG 59.864 47.826 0.00 0.00 0.00 3.86
3676 14223 2.849943 TGTGCCCCTTTGTATATCTGGT 59.150 45.455 0.00 0.00 0.00 4.00
3677 14224 3.268334 TGTGCCCCTTTGTATATCTGGTT 59.732 43.478 0.00 0.00 0.00 3.67
3678 14225 3.883489 GTGCCCCTTTGTATATCTGGTTC 59.117 47.826 0.00 0.00 0.00 3.62
3679 14226 3.525609 TGCCCCTTTGTATATCTGGTTCA 59.474 43.478 0.00 0.00 0.00 3.18
3680 14227 3.883489 GCCCCTTTGTATATCTGGTTCAC 59.117 47.826 0.00 0.00 0.00 3.18
3681 14228 4.385310 GCCCCTTTGTATATCTGGTTCACT 60.385 45.833 0.00 0.00 0.00 3.41
3682 14229 5.755849 CCCCTTTGTATATCTGGTTCACTT 58.244 41.667 0.00 0.00 0.00 3.16
3683 14230 5.590259 CCCCTTTGTATATCTGGTTCACTTG 59.410 44.000 0.00 0.00 0.00 3.16
3684 14231 6.414732 CCCTTTGTATATCTGGTTCACTTGA 58.585 40.000 0.00 0.00 0.00 3.02
3685 14232 6.884295 CCCTTTGTATATCTGGTTCACTTGAA 59.116 38.462 0.00 0.00 0.00 2.69
3696 14243 4.686839 GTTCACTTGAACCCTATCTTGC 57.313 45.455 10.50 0.00 46.42 4.01
3697 14244 4.072131 GTTCACTTGAACCCTATCTTGCA 58.928 43.478 10.50 0.00 46.42 4.08
3698 14245 4.365514 TCACTTGAACCCTATCTTGCAA 57.634 40.909 0.00 0.00 0.00 4.08
3699 14246 4.072131 TCACTTGAACCCTATCTTGCAAC 58.928 43.478 0.00 0.00 0.00 4.17
3700 14247 3.074412 ACTTGAACCCTATCTTGCAACG 58.926 45.455 0.00 0.00 0.00 4.10
3701 14248 3.244422 ACTTGAACCCTATCTTGCAACGA 60.244 43.478 0.00 0.00 0.00 3.85
3702 14249 2.972625 TGAACCCTATCTTGCAACGAG 58.027 47.619 0.00 0.00 0.00 4.18
3703 14250 2.280628 GAACCCTATCTTGCAACGAGG 58.719 52.381 0.00 2.13 0.00 4.63
3704 14251 1.276622 ACCCTATCTTGCAACGAGGT 58.723 50.000 13.08 8.34 0.00 3.85
3705 14252 1.628846 ACCCTATCTTGCAACGAGGTT 59.371 47.619 13.08 0.00 0.00 3.50
3706 14253 2.009774 CCCTATCTTGCAACGAGGTTG 58.990 52.381 13.08 4.19 45.24 3.77
3707 14254 2.615493 CCCTATCTTGCAACGAGGTTGT 60.615 50.000 13.08 0.00 44.40 3.32
3708 14255 3.369052 CCCTATCTTGCAACGAGGTTGTA 60.369 47.826 13.08 2.97 44.40 2.41
3709 14256 4.250464 CCTATCTTGCAACGAGGTTGTAA 58.750 43.478 10.70 10.70 43.47 2.41
3710 14257 4.693566 CCTATCTTGCAACGAGGTTGTAAA 59.306 41.667 11.94 6.18 44.54 2.01
3711 14258 4.749245 ATCTTGCAACGAGGTTGTAAAG 57.251 40.909 11.94 13.38 44.54 1.85
3712 14259 2.289547 TCTTGCAACGAGGTTGTAAAGC 59.710 45.455 11.94 0.00 44.54 3.51
3723 14270 4.513198 GGTTGTAAAGCCTTATGTGCAA 57.487 40.909 0.00 0.00 38.67 4.08
3724 14271 4.877282 GGTTGTAAAGCCTTATGTGCAAA 58.123 39.130 0.00 0.00 38.67 3.68
3725 14272 5.293560 GGTTGTAAAGCCTTATGTGCAAAA 58.706 37.500 0.00 0.00 38.67 2.44
3726 14273 5.931724 GGTTGTAAAGCCTTATGTGCAAAAT 59.068 36.000 0.00 0.00 38.67 1.82
3727 14274 6.128580 GGTTGTAAAGCCTTATGTGCAAAATG 60.129 38.462 0.00 0.00 38.67 2.32
3728 14275 5.477510 TGTAAAGCCTTATGTGCAAAATGG 58.522 37.500 0.00 0.00 0.00 3.16
3729 14276 4.888326 AAAGCCTTATGTGCAAAATGGA 57.112 36.364 0.00 0.00 0.00 3.41
3730 14277 5.425196 AAAGCCTTATGTGCAAAATGGAT 57.575 34.783 0.00 0.00 0.00 3.41
3731 14278 6.543430 AAAGCCTTATGTGCAAAATGGATA 57.457 33.333 0.00 0.00 0.00 2.59
3732 14279 5.520376 AGCCTTATGTGCAAAATGGATAC 57.480 39.130 0.00 0.00 0.00 2.24
3757 14304 8.302438 ACAATTCATGTGAGAAAATTCTTCTCC 58.698 33.333 19.09 13.93 43.14 3.71
3758 14305 6.824305 TTCATGTGAGAAAATTCTTCTCCC 57.176 37.500 19.09 12.89 43.14 4.30
3759 14306 6.131972 TCATGTGAGAAAATTCTTCTCCCT 57.868 37.500 19.09 8.16 43.14 4.20
3760 14307 6.176183 TCATGTGAGAAAATTCTTCTCCCTC 58.824 40.000 19.09 13.35 43.14 4.30
3761 14308 4.911390 TGTGAGAAAATTCTTCTCCCTCC 58.089 43.478 19.09 10.53 43.14 4.30
3762 14309 3.935828 GTGAGAAAATTCTTCTCCCTCCG 59.064 47.826 19.09 0.00 43.14 4.63
3763 14310 2.939756 GAGAAAATTCTTCTCCCTCCGC 59.060 50.000 14.47 0.00 39.11 5.54
3764 14311 1.666189 GAAAATTCTTCTCCCTCCGCG 59.334 52.381 0.00 0.00 0.00 6.46
3765 14312 0.107654 AAATTCTTCTCCCTCCGCGG 60.108 55.000 22.12 22.12 0.00 6.46
3766 14313 1.265454 AATTCTTCTCCCTCCGCGGT 61.265 55.000 27.15 0.00 0.00 5.68
3767 14314 1.961180 ATTCTTCTCCCTCCGCGGTG 61.961 60.000 27.15 23.40 0.00 4.94
3768 14315 3.068691 CTTCTCCCTCCGCGGTGA 61.069 66.667 27.84 19.44 0.00 4.02
3769 14316 2.602267 TTCTCCCTCCGCGGTGAA 60.602 61.111 27.84 19.07 33.98 3.18
3770 14317 2.167398 CTTCTCCCTCCGCGGTGAAA 62.167 60.000 27.84 14.01 35.55 2.69
3771 14318 1.550130 TTCTCCCTCCGCGGTGAAAT 61.550 55.000 27.84 0.00 33.57 2.17
3772 14319 1.078426 CTCCCTCCGCGGTGAAATT 60.078 57.895 27.84 0.00 0.00 1.82
3773 14320 0.177141 CTCCCTCCGCGGTGAAATTA 59.823 55.000 27.84 4.34 0.00 1.40
3774 14321 0.614294 TCCCTCCGCGGTGAAATTAA 59.386 50.000 27.84 3.51 0.00 1.40
3775 14322 1.003349 TCCCTCCGCGGTGAAATTAAA 59.997 47.619 27.84 2.70 0.00 1.52
3776 14323 1.813786 CCCTCCGCGGTGAAATTAAAA 59.186 47.619 27.84 1.88 0.00 1.52
3777 14324 2.229302 CCCTCCGCGGTGAAATTAAAAA 59.771 45.455 27.84 1.31 0.00 1.94
3856 14407 5.939764 ATTGATACTTCCACTACAGCTCA 57.060 39.130 0.00 0.00 0.00 4.26
3888 14439 4.844085 TCTTCAGACCCAGAGGACAAATAA 59.156 41.667 0.00 0.00 36.73 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 3.452264 ACAGCCTTCATGTGCTACAGATA 59.548 43.478 6.79 0.00 35.69 1.98
6 7 2.105006 ACAGCCTTCATGTGCTACAG 57.895 50.000 6.79 0.00 35.69 2.74
9 10 1.134818 CGGTACAGCCTTCATGTGCTA 60.135 52.381 6.79 0.00 35.69 3.49
10 11 0.391661 CGGTACAGCCTTCATGTGCT 60.392 55.000 0.00 0.00 38.67 4.40
11 12 0.391130 TCGGTACAGCCTTCATGTGC 60.391 55.000 0.00 0.00 34.25 4.57
13 14 1.134401 CCATCGGTACAGCCTTCATGT 60.134 52.381 0.00 0.00 34.25 3.21
14 15 1.138859 TCCATCGGTACAGCCTTCATG 59.861 52.381 0.00 0.00 34.25 3.07
16 17 0.535335 GTCCATCGGTACAGCCTTCA 59.465 55.000 0.00 0.00 34.25 3.02
20 21 1.144057 CCAGTCCATCGGTACAGCC 59.856 63.158 0.00 0.00 0.00 4.85
22 23 0.249120 TTGCCAGTCCATCGGTACAG 59.751 55.000 0.00 0.00 0.00 2.74
24 25 0.462047 CCTTGCCAGTCCATCGGTAC 60.462 60.000 0.00 0.00 0.00 3.34
25 26 0.616395 TCCTTGCCAGTCCATCGGTA 60.616 55.000 0.00 0.00 0.00 4.02
26 27 1.918293 TCCTTGCCAGTCCATCGGT 60.918 57.895 0.00 0.00 0.00 4.69
28 29 1.450312 GGTCCTTGCCAGTCCATCG 60.450 63.158 0.00 0.00 0.00 3.84
29 30 1.450312 CGGTCCTTGCCAGTCCATC 60.450 63.158 0.00 0.00 0.00 3.51
30 31 1.488705 TTCGGTCCTTGCCAGTCCAT 61.489 55.000 0.00 0.00 0.00 3.41
34 35 1.247567 CAAATTCGGTCCTTGCCAGT 58.752 50.000 0.00 0.00 0.00 4.00
35 36 1.068333 CACAAATTCGGTCCTTGCCAG 60.068 52.381 0.00 0.00 0.00 4.85
37 38 1.243902 TCACAAATTCGGTCCTTGCC 58.756 50.000 0.00 0.00 0.00 4.52
39 40 3.941483 AGCTATCACAAATTCGGTCCTTG 59.059 43.478 0.00 0.00 0.00 3.61
40 41 4.222124 AGCTATCACAAATTCGGTCCTT 57.778 40.909 0.00 0.00 0.00 3.36
41 42 3.914426 AGCTATCACAAATTCGGTCCT 57.086 42.857 0.00 0.00 0.00 3.85
42 43 6.220930 TGTATAGCTATCACAAATTCGGTCC 58.779 40.000 10.16 0.00 0.00 4.46
43 44 7.201359 CGATGTATAGCTATCACAAATTCGGTC 60.201 40.741 10.16 5.49 0.00 4.79
44 45 6.586463 CGATGTATAGCTATCACAAATTCGGT 59.414 38.462 10.16 0.00 0.00 4.69
46 47 6.309009 AGCGATGTATAGCTATCACAAATTCG 59.691 38.462 10.16 17.01 42.60 3.34
47 48 7.329471 TCAGCGATGTATAGCTATCACAAATTC 59.671 37.037 10.16 7.24 42.52 2.17
49 50 6.691508 TCAGCGATGTATAGCTATCACAAAT 58.308 36.000 10.16 0.00 42.52 2.32
52 53 5.705609 TTCAGCGATGTATAGCTATCACA 57.294 39.130 10.16 12.92 42.52 3.58
53 54 5.453909 CGATTCAGCGATGTATAGCTATCAC 59.546 44.000 10.16 7.80 42.52 3.06
54 55 5.354234 TCGATTCAGCGATGTATAGCTATCA 59.646 40.000 10.16 8.75 42.52 2.15
55 56 5.811588 TCGATTCAGCGATGTATAGCTATC 58.188 41.667 10.16 2.99 42.52 2.08
56 57 5.586643 TCTCGATTCAGCGATGTATAGCTAT 59.413 40.000 11.77 11.77 42.52 2.97
57 58 4.935808 TCTCGATTCAGCGATGTATAGCTA 59.064 41.667 0.00 0.00 42.52 3.32
58 59 3.753797 TCTCGATTCAGCGATGTATAGCT 59.246 43.478 0.00 0.00 45.74 3.32
59 60 4.084889 TCTCGATTCAGCGATGTATAGC 57.915 45.455 0.00 0.00 39.85 2.97
60 61 5.450704 CGATTCTCGATTCAGCGATGTATAG 59.549 44.000 0.00 0.00 43.74 1.31
61 62 5.324697 CGATTCTCGATTCAGCGATGTATA 58.675 41.667 0.00 0.00 43.74 1.47
62 63 4.162072 CGATTCTCGATTCAGCGATGTAT 58.838 43.478 0.00 0.00 43.74 2.29
64 65 2.389059 CGATTCTCGATTCAGCGATGT 58.611 47.619 0.00 0.00 43.74 3.06
66 67 1.609072 TCCGATTCTCGATTCAGCGAT 59.391 47.619 0.00 0.00 43.74 4.58
68 69 1.268794 ACTCCGATTCTCGATTCAGCG 60.269 52.381 0.00 0.00 43.74 5.18
69 70 2.500509 ACTCCGATTCTCGATTCAGC 57.499 50.000 0.00 0.00 43.74 4.26
70 71 4.778904 GAGTACTCCGATTCTCGATTCAG 58.221 47.826 12.13 0.00 43.74 3.02
77 78 4.104066 GGAAAACGAGTACTCCGATTCTC 58.896 47.826 17.23 5.76 32.01 2.87
78 79 3.762823 AGGAAAACGAGTACTCCGATTCT 59.237 43.478 17.23 5.55 32.91 2.40
79 80 4.107363 AGGAAAACGAGTACTCCGATTC 57.893 45.455 17.23 16.25 32.91 2.52
80 81 4.243270 CAAGGAAAACGAGTACTCCGATT 58.757 43.478 17.23 9.06 32.91 3.34
81 82 3.257624 ACAAGGAAAACGAGTACTCCGAT 59.742 43.478 17.23 4.69 32.91 4.18
82 83 2.624838 ACAAGGAAAACGAGTACTCCGA 59.375 45.455 17.23 0.00 32.91 4.55
84 85 7.430992 AAATAACAAGGAAAACGAGTACTCC 57.569 36.000 17.23 2.83 0.00 3.85
107 108 0.825840 CCCCTGCCGACAAGGAAAAA 60.826 55.000 0.00 0.00 45.00 1.94
110 111 4.344865 GCCCCTGCCGACAAGGAA 62.345 66.667 0.00 0.00 45.00 3.36
112 113 3.868200 AAAGCCCCTGCCGACAAGG 62.868 63.158 0.00 0.00 44.97 3.61
115 116 2.197324 AAAAAGCCCCTGCCGACA 59.803 55.556 0.00 0.00 38.69 4.35
144 145 5.828299 TGTGAAAACCATCTCGACTTTTT 57.172 34.783 0.00 0.00 0.00 1.94
145 146 5.828299 TTGTGAAAACCATCTCGACTTTT 57.172 34.783 0.00 0.00 0.00 2.27
146 147 5.828299 TTTGTGAAAACCATCTCGACTTT 57.172 34.783 0.00 0.00 0.00 2.66
148 149 5.828299 TTTTTGTGAAAACCATCTCGACT 57.172 34.783 0.00 0.00 30.07 4.18
167 168 3.824443 GCGTATGGGTATGGCCTATTTTT 59.176 43.478 3.32 0.00 39.36 1.94
168 169 3.418047 GCGTATGGGTATGGCCTATTTT 58.582 45.455 3.32 0.00 39.36 1.82
169 170 2.290705 GGCGTATGGGTATGGCCTATTT 60.291 50.000 3.32 0.00 39.36 1.40
171 172 0.909623 GGCGTATGGGTATGGCCTAT 59.090 55.000 3.32 0.00 41.64 2.57
173 174 3.157680 GGCGTATGGGTATGGCCT 58.842 61.111 3.32 0.00 40.59 5.19
175 176 2.033602 GGGGCGTATGGGTATGGC 59.966 66.667 0.00 0.00 40.62 4.40
176 177 1.838073 GAGGGGGCGTATGGGTATGG 61.838 65.000 0.00 0.00 0.00 2.74
178 179 1.538135 GGAGGGGGCGTATGGGTAT 60.538 63.158 0.00 0.00 0.00 2.73
179 180 2.122725 GGAGGGGGCGTATGGGTA 60.123 66.667 0.00 0.00 0.00 3.69
180 181 3.731886 ATGGAGGGGGCGTATGGGT 62.732 63.158 0.00 0.00 0.00 4.51
181 182 2.854032 ATGGAGGGGGCGTATGGG 60.854 66.667 0.00 0.00 0.00 4.00
182 183 2.397413 GACATGGAGGGGGCGTATGG 62.397 65.000 0.00 0.00 0.00 2.74
183 184 1.071471 GACATGGAGGGGGCGTATG 59.929 63.158 0.00 0.00 0.00 2.39
184 185 0.694444 AAGACATGGAGGGGGCGTAT 60.694 55.000 0.00 0.00 0.00 3.06
188 189 0.181350 CTACAAGACATGGAGGGGGC 59.819 60.000 0.00 0.00 36.21 5.80
190 191 1.137086 CGACTACAAGACATGGAGGGG 59.863 57.143 0.00 0.00 45.12 4.79
193 194 2.164422 TCAGCGACTACAAGACATGGAG 59.836 50.000 0.00 0.00 46.40 3.86
194 195 2.094700 GTCAGCGACTACAAGACATGGA 60.095 50.000 0.00 0.00 0.00 3.41
196 197 2.919859 CTGTCAGCGACTACAAGACATG 59.080 50.000 9.49 0.00 38.40 3.21
197 198 2.672478 GCTGTCAGCGACTACAAGACAT 60.672 50.000 9.53 0.00 38.40 3.06
198 199 1.335964 GCTGTCAGCGACTACAAGACA 60.336 52.381 9.53 0.00 37.61 3.41
199 200 1.341606 GCTGTCAGCGACTACAAGAC 58.658 55.000 9.53 0.00 33.15 3.01
229 230 2.507102 CTAGACGTGCCAGCGTGG 60.507 66.667 0.00 0.25 45.79 4.94
230 231 1.801913 GACTAGACGTGCCAGCGTG 60.802 63.158 0.00 0.00 45.79 5.34
235 236 1.586541 CAGCTGACTAGACGTGCCA 59.413 57.895 8.42 0.00 0.00 4.92
236 237 1.807573 GCAGCTGACTAGACGTGCC 60.808 63.158 20.43 0.00 0.00 5.01
239 240 1.649390 CCGAGCAGCTGACTAGACGT 61.649 60.000 20.43 0.00 0.00 4.34
240 241 1.063327 CCGAGCAGCTGACTAGACG 59.937 63.158 20.43 13.15 0.00 4.18
242 243 2.418910 GCCCGAGCAGCTGACTAGA 61.419 63.158 20.43 0.00 39.53 2.43
243 244 2.105930 GCCCGAGCAGCTGACTAG 59.894 66.667 20.43 13.85 39.53 2.57
244 245 3.826754 CGCCCGAGCAGCTGACTA 61.827 66.667 20.43 0.00 39.83 2.59
247 248 4.129737 GTACGCCCGAGCAGCTGA 62.130 66.667 20.43 0.00 39.83 4.26
248 249 4.435436 TGTACGCCCGAGCAGCTG 62.435 66.667 10.11 10.11 39.83 4.24
251 252 1.666553 TTTGTGTACGCCCGAGCAG 60.667 57.895 3.51 0.00 39.83 4.24
252 253 1.957186 GTTTGTGTACGCCCGAGCA 60.957 57.895 3.51 0.00 39.83 4.26
253 254 2.858158 GTTTGTGTACGCCCGAGC 59.142 61.111 3.51 0.00 0.00 5.03
254 255 1.662446 ACGTTTGTGTACGCCCGAG 60.662 57.895 14.53 3.22 45.06 4.63
256 257 1.286354 ATCACGTTTGTGTACGCCCG 61.286 55.000 3.51 6.35 46.49 6.13
257 258 0.869730 AATCACGTTTGTGTACGCCC 59.130 50.000 3.51 0.00 46.49 6.13
267 268 3.907894 AATACGGTGCAAATCACGTTT 57.092 38.095 6.90 0.00 46.56 3.60
268 269 3.560503 CAAATACGGTGCAAATCACGTT 58.439 40.909 6.90 0.00 46.56 3.99
270 271 1.910819 GCAAATACGGTGCAAATCACG 59.089 47.619 0.00 0.00 46.56 4.35
277 278 0.236187 GAACGTGCAAATACGGTGCA 59.764 50.000 3.29 0.00 45.22 4.57
278 279 0.787908 CGAACGTGCAAATACGGTGC 60.788 55.000 0.00 0.00 45.22 5.01
279 280 0.785378 TCGAACGTGCAAATACGGTG 59.215 50.000 0.00 0.00 45.22 4.94
285 286 0.040425 GTTGGCTCGAACGTGCAAAT 60.040 50.000 19.56 0.00 36.47 2.32
286 287 1.092921 AGTTGGCTCGAACGTGCAAA 61.093 50.000 19.56 13.58 36.47 3.68
287 288 1.092921 AAGTTGGCTCGAACGTGCAA 61.093 50.000 19.56 8.62 36.47 4.08
289 290 1.076332 ATAAGTTGGCTCGAACGTGC 58.924 50.000 11.82 11.82 0.00 5.34
290 291 3.676172 TGTAATAAGTTGGCTCGAACGTG 59.324 43.478 0.00 0.00 0.00 4.49
291 292 3.676646 GTGTAATAAGTTGGCTCGAACGT 59.323 43.478 0.00 0.00 0.00 3.99
292 293 3.061697 GGTGTAATAAGTTGGCTCGAACG 59.938 47.826 0.00 0.00 0.00 3.95
294 295 4.250464 CTGGTGTAATAAGTTGGCTCGAA 58.750 43.478 0.00 0.00 0.00 3.71
296 297 3.596214 ACTGGTGTAATAAGTTGGCTCG 58.404 45.455 0.00 0.00 0.00 5.03
297 298 5.959618 AAACTGGTGTAATAAGTTGGCTC 57.040 39.130 0.00 0.00 34.46 4.70
298 299 7.450323 ACATTAAACTGGTGTAATAAGTTGGCT 59.550 33.333 0.00 0.00 34.46 4.75
299 300 7.599171 ACATTAAACTGGTGTAATAAGTTGGC 58.401 34.615 0.00 0.00 34.46 4.52
303 304 8.899771 GGCATACATTAAACTGGTGTAATAAGT 58.100 33.333 0.00 0.00 32.65 2.24
306 307 7.829706 TGTGGCATACATTAAACTGGTGTAATA 59.170 33.333 0.00 0.00 33.42 0.98
307 308 6.661377 TGTGGCATACATTAAACTGGTGTAAT 59.339 34.615 0.00 0.00 33.42 1.89
309 310 5.561679 TGTGGCATACATTAAACTGGTGTA 58.438 37.500 0.00 0.00 33.42 2.90
310 311 4.402829 TGTGGCATACATTAAACTGGTGT 58.597 39.130 0.00 0.00 33.42 4.16
311 312 5.048083 ACTTGTGGCATACATTAAACTGGTG 60.048 40.000 0.00 0.00 39.48 4.17
313 314 5.643379 ACTTGTGGCATACATTAAACTGG 57.357 39.130 0.00 0.00 39.48 4.00
314 315 6.913170 AGAACTTGTGGCATACATTAAACTG 58.087 36.000 0.00 0.00 39.48 3.16
316 317 8.293867 TGTTAGAACTTGTGGCATACATTAAAC 58.706 33.333 0.00 0.00 39.48 2.01
319 320 6.373216 GGTGTTAGAACTTGTGGCATACATTA 59.627 38.462 0.00 0.00 39.48 1.90
320 321 5.183140 GGTGTTAGAACTTGTGGCATACATT 59.817 40.000 0.00 0.00 39.48 2.71
321 322 4.700213 GGTGTTAGAACTTGTGGCATACAT 59.300 41.667 0.00 0.00 39.48 2.29
322 323 4.069304 GGTGTTAGAACTTGTGGCATACA 58.931 43.478 0.00 0.00 37.56 2.29
324 325 4.359434 TGGTGTTAGAACTTGTGGCATA 57.641 40.909 0.00 0.00 0.00 3.14
325 326 3.222173 TGGTGTTAGAACTTGTGGCAT 57.778 42.857 0.00 0.00 0.00 4.40
326 327 2.719531 TGGTGTTAGAACTTGTGGCA 57.280 45.000 0.00 0.00 0.00 4.92
327 328 3.380320 ACTTTGGTGTTAGAACTTGTGGC 59.620 43.478 0.00 0.00 0.00 5.01
328 329 4.638421 TCACTTTGGTGTTAGAACTTGTGG 59.362 41.667 0.00 0.00 43.41 4.17
329 330 5.811399 TCACTTTGGTGTTAGAACTTGTG 57.189 39.130 0.00 0.00 43.41 3.33
331 332 6.795399 ACAATCACTTTGGTGTTAGAACTTG 58.205 36.000 0.00 0.00 43.41 3.16
332 333 7.404671 AACAATCACTTTGGTGTTAGAACTT 57.595 32.000 0.00 0.00 43.41 2.66
335 336 7.032580 CACAAACAATCACTTTGGTGTTAGAA 58.967 34.615 0.00 0.00 43.41 2.10
337 338 6.329496 ACACAAACAATCACTTTGGTGTTAG 58.671 36.000 0.00 0.00 43.41 2.34
338 339 6.071896 TGACACAAACAATCACTTTGGTGTTA 60.072 34.615 0.00 0.00 43.41 2.41
340 341 4.219507 TGACACAAACAATCACTTTGGTGT 59.780 37.500 0.00 0.00 43.41 4.16
341 342 4.742417 TGACACAAACAATCACTTTGGTG 58.258 39.130 0.00 0.00 44.23 4.17
343 344 5.410067 ACTTGACACAAACAATCACTTTGG 58.590 37.500 0.00 0.00 39.80 3.28
346 347 6.515272 AGAACTTGACACAAACAATCACTT 57.485 33.333 0.00 0.00 0.00 3.16
347 348 6.238484 GCTAGAACTTGACACAAACAATCACT 60.238 38.462 0.00 0.00 0.00 3.41
348 349 5.909610 GCTAGAACTTGACACAAACAATCAC 59.090 40.000 0.00 0.00 0.00 3.06
349 350 5.588246 TGCTAGAACTTGACACAAACAATCA 59.412 36.000 0.00 0.00 0.00 2.57
350 351 5.909610 GTGCTAGAACTTGACACAAACAATC 59.090 40.000 0.00 0.00 0.00 2.67
351 352 5.221048 GGTGCTAGAACTTGACACAAACAAT 60.221 40.000 0.00 0.00 32.89 2.71
352 353 4.095782 GGTGCTAGAACTTGACACAAACAA 59.904 41.667 0.00 0.00 32.89 2.83
353 354 3.625764 GGTGCTAGAACTTGACACAAACA 59.374 43.478 0.00 0.00 32.89 2.83
354 355 3.625764 TGGTGCTAGAACTTGACACAAAC 59.374 43.478 0.00 0.00 32.89 2.93
355 356 3.625764 GTGGTGCTAGAACTTGACACAAA 59.374 43.478 0.00 0.00 32.89 2.83
356 357 3.202906 GTGGTGCTAGAACTTGACACAA 58.797 45.455 0.00 0.00 32.89 3.33
357 358 2.484770 GGTGGTGCTAGAACTTGACACA 60.485 50.000 0.00 0.00 32.89 3.72
358 359 2.143925 GGTGGTGCTAGAACTTGACAC 58.856 52.381 0.00 0.12 0.00 3.67
359 360 1.270094 CGGTGGTGCTAGAACTTGACA 60.270 52.381 0.00 0.00 0.00 3.58
360 361 1.429463 CGGTGGTGCTAGAACTTGAC 58.571 55.000 0.00 0.00 0.00 3.18
361 362 0.320374 CCGGTGGTGCTAGAACTTGA 59.680 55.000 0.00 0.00 0.00 3.02
363 364 2.448749 ACCGGTGGTGCTAGAACTT 58.551 52.632 6.12 0.00 32.98 2.66
364 365 4.210158 ACCGGTGGTGCTAGAACT 57.790 55.556 6.12 0.00 32.98 3.01
373 374 1.975680 AGAGTCAATTACACCGGTGGT 59.024 47.619 36.47 23.92 35.62 4.16
375 376 6.737254 AATTAAGAGTCAATTACACCGGTG 57.263 37.500 32.83 32.83 0.00 4.94
376 377 8.724229 GTTTAATTAAGAGTCAATTACACCGGT 58.276 33.333 0.00 0.00 29.75 5.28
391 392 8.999431 AGCGATCTTGTTCTTGTTTAATTAAGA 58.001 29.630 0.00 0.00 0.00 2.10
392 393 9.055248 CAGCGATCTTGTTCTTGTTTAATTAAG 57.945 33.333 0.00 0.00 0.00 1.85
393 394 8.779303 TCAGCGATCTTGTTCTTGTTTAATTAA 58.221 29.630 0.00 0.00 0.00 1.40
394 395 8.317891 TCAGCGATCTTGTTCTTGTTTAATTA 57.682 30.769 0.00 0.00 0.00 1.40
395 396 7.202016 TCAGCGATCTTGTTCTTGTTTAATT 57.798 32.000 0.00 0.00 0.00 1.40
396 397 6.801539 TCAGCGATCTTGTTCTTGTTTAAT 57.198 33.333 0.00 0.00 0.00 1.40
397 398 6.612247 TTCAGCGATCTTGTTCTTGTTTAA 57.388 33.333 0.00 0.00 0.00 1.52
398 399 6.801539 ATTCAGCGATCTTGTTCTTGTTTA 57.198 33.333 0.00 0.00 0.00 2.01
399 400 5.695851 ATTCAGCGATCTTGTTCTTGTTT 57.304 34.783 0.00 0.00 0.00 2.83
400 401 5.163814 GCTATTCAGCGATCTTGTTCTTGTT 60.164 40.000 0.00 0.00 38.22 2.83
401 402 4.331168 GCTATTCAGCGATCTTGTTCTTGT 59.669 41.667 0.00 0.00 38.22 3.16
420 4929 2.186903 CGAGTTGGCACGGGCTAT 59.813 61.111 10.74 0.00 40.87 2.97
464 4973 6.079763 CGCGCTTTGTTTAATCATGCTATAT 58.920 36.000 5.56 0.00 0.00 0.86
465 4974 5.439828 CGCGCTTTGTTTAATCATGCTATA 58.560 37.500 5.56 0.00 0.00 1.31
555 5064 6.513230 GCTTCAATTATCGTCCATGCATGTTA 60.513 38.462 24.58 10.24 0.00 2.41
926 8947 3.189606 TGCCTCCCTTAATTTCTCTCCA 58.810 45.455 0.00 0.00 0.00 3.86
944 8965 3.129871 CTCTTGCTAGAGTATGCTTGCC 58.870 50.000 16.00 0.00 42.50 4.52
1182 10651 2.714259 CTGTTGAAGAAACGGCCCA 58.286 52.632 0.00 0.00 42.10 5.36
1190 10659 2.657297 GCCATGGGCTGTTGAAGAA 58.343 52.632 15.13 0.00 46.69 2.52
1191 10660 4.421365 GCCATGGGCTGTTGAAGA 57.579 55.556 15.13 0.00 46.69 2.87
1480 10985 2.726351 GGTGGGCTCCGGAGAAGAG 61.726 68.421 35.69 9.75 0.00 2.85
1633 11144 0.109597 CAGGACAAATGCGAGTTGCC 60.110 55.000 0.00 0.00 45.60 4.52
1730 11320 7.318893 TCCATCTACAGATTGATCGATTGATC 58.681 38.462 15.15 15.15 41.07 2.92
2160 11957 4.022416 GTGCATGGGATGTGTTTTACAAGA 60.022 41.667 0.00 0.00 43.77 3.02
2342 12252 7.841915 TGATTCGTGTTATCTGCTAATCAAA 57.158 32.000 0.00 0.00 31.06 2.69
2373 12284 5.106396 TGTGGTGTTTTTCTGGCAATTTTTG 60.106 36.000 0.00 0.00 0.00 2.44
2444 12365 4.850680 ACGGTTGGGCTTTCATTAAGATA 58.149 39.130 0.00 0.00 35.80 1.98
2457 12378 0.167251 CGATGTTTGTACGGTTGGGC 59.833 55.000 0.00 0.00 0.00 5.36
2464 12385 2.842069 GCTTCGATGCGATGTTTGTACG 60.842 50.000 7.60 0.00 35.23 3.67
2736 13064 5.566469 TCCGGACAAGAAATTAGTGGAAAT 58.434 37.500 0.00 0.00 0.00 2.17
2758 13086 6.537301 TGTAGAAAACATGTACATTCGGGATC 59.463 38.462 5.37 0.75 33.20 3.36
3031 13411 4.848562 ACATATGCTTGATTCATGCAGG 57.151 40.909 25.43 20.13 45.12 4.85
3176 13691 2.096248 GTCGGCCAAATCCCAATACAA 58.904 47.619 2.24 0.00 0.00 2.41
3214 13746 1.216122 CCCAACCAAATGCAACAACG 58.784 50.000 0.00 0.00 0.00 4.10
3241 13779 7.698836 ACATACACAAGAAACAAAAATCTGC 57.301 32.000 0.00 0.00 0.00 4.26
3283 13821 6.586868 TGACAAAACTTGATGAACAATTGC 57.413 33.333 5.05 0.00 37.88 3.56
3583 14129 5.545063 TTTCCCTCAATGTCTATCGCATA 57.455 39.130 0.00 0.00 0.00 3.14
3640 14187 3.149196 GGGCACAGAAGAAGAACATGAA 58.851 45.455 0.00 0.00 0.00 2.57
3641 14188 2.553028 GGGGCACAGAAGAAGAACATGA 60.553 50.000 0.00 0.00 0.00 3.07
3642 14189 1.815003 GGGGCACAGAAGAAGAACATG 59.185 52.381 0.00 0.00 0.00 3.21
3643 14190 1.707427 AGGGGCACAGAAGAAGAACAT 59.293 47.619 0.00 0.00 0.00 2.71
3644 14191 1.140312 AGGGGCACAGAAGAAGAACA 58.860 50.000 0.00 0.00 0.00 3.18
3645 14192 2.278332 AAGGGGCACAGAAGAAGAAC 57.722 50.000 0.00 0.00 0.00 3.01
3646 14193 2.091885 ACAAAGGGGCACAGAAGAAGAA 60.092 45.455 0.00 0.00 0.00 2.52
3647 14194 1.494721 ACAAAGGGGCACAGAAGAAGA 59.505 47.619 0.00 0.00 0.00 2.87
3648 14195 1.986882 ACAAAGGGGCACAGAAGAAG 58.013 50.000 0.00 0.00 0.00 2.85
3649 14196 3.806949 ATACAAAGGGGCACAGAAGAA 57.193 42.857 0.00 0.00 0.00 2.52
3650 14197 4.721776 AGATATACAAAGGGGCACAGAAGA 59.278 41.667 0.00 0.00 0.00 2.87
3651 14198 4.818546 CAGATATACAAAGGGGCACAGAAG 59.181 45.833 0.00 0.00 0.00 2.85
3652 14199 4.385199 CCAGATATACAAAGGGGCACAGAA 60.385 45.833 0.00 0.00 0.00 3.02
3653 14200 3.136443 CCAGATATACAAAGGGGCACAGA 59.864 47.826 0.00 0.00 0.00 3.41
3654 14201 3.117888 ACCAGATATACAAAGGGGCACAG 60.118 47.826 0.00 0.00 0.00 3.66
3655 14202 2.849943 ACCAGATATACAAAGGGGCACA 59.150 45.455 0.00 0.00 0.00 4.57
3656 14203 3.577805 ACCAGATATACAAAGGGGCAC 57.422 47.619 0.00 0.00 0.00 5.01
3657 14204 3.525609 TGAACCAGATATACAAAGGGGCA 59.474 43.478 0.00 0.00 0.00 5.36
3658 14205 3.883489 GTGAACCAGATATACAAAGGGGC 59.117 47.826 0.00 0.00 0.00 5.80
3659 14206 5.373812 AGTGAACCAGATATACAAAGGGG 57.626 43.478 0.00 0.00 0.00 4.79
3660 14207 6.414732 TCAAGTGAACCAGATATACAAAGGG 58.585 40.000 0.00 0.00 0.00 3.95
3661 14208 7.752695 GTTCAAGTGAACCAGATATACAAAGG 58.247 38.462 12.29 0.00 46.42 3.11
3676 14223 4.365514 TGCAAGATAGGGTTCAAGTGAA 57.634 40.909 0.00 0.00 0.00 3.18
3677 14224 4.072131 GTTGCAAGATAGGGTTCAAGTGA 58.928 43.478 0.00 0.00 0.00 3.41
3678 14225 3.120199 CGTTGCAAGATAGGGTTCAAGTG 60.120 47.826 0.00 0.00 0.00 3.16
3679 14226 3.074412 CGTTGCAAGATAGGGTTCAAGT 58.926 45.455 0.00 0.00 0.00 3.16
3680 14227 3.334691 TCGTTGCAAGATAGGGTTCAAG 58.665 45.455 0.00 0.00 0.00 3.02
3681 14228 3.334691 CTCGTTGCAAGATAGGGTTCAA 58.665 45.455 0.00 0.00 0.00 2.69
3682 14229 2.354704 CCTCGTTGCAAGATAGGGTTCA 60.355 50.000 0.00 0.00 0.00 3.18
3683 14230 2.280628 CCTCGTTGCAAGATAGGGTTC 58.719 52.381 0.00 0.00 0.00 3.62
3684 14231 1.628846 ACCTCGTTGCAAGATAGGGTT 59.371 47.619 20.24 3.73 0.00 4.11
3685 14232 1.276622 ACCTCGTTGCAAGATAGGGT 58.723 50.000 20.24 12.74 0.00 4.34
3686 14233 2.009774 CAACCTCGTTGCAAGATAGGG 58.990 52.381 20.24 12.23 36.73 3.53
3687 14234 2.699954 ACAACCTCGTTGCAAGATAGG 58.300 47.619 16.45 16.45 46.20 2.57
3688 14235 5.671329 GCTTTACAACCTCGTTGCAAGATAG 60.671 44.000 15.92 0.00 46.20 2.08
3689 14236 4.153475 GCTTTACAACCTCGTTGCAAGATA 59.847 41.667 15.92 0.00 46.20 1.98
3690 14237 3.058224 GCTTTACAACCTCGTTGCAAGAT 60.058 43.478 15.92 0.00 46.20 2.40
3691 14238 2.289547 GCTTTACAACCTCGTTGCAAGA 59.710 45.455 15.92 0.00 46.20 3.02
3692 14239 2.604614 GGCTTTACAACCTCGTTGCAAG 60.605 50.000 0.00 8.13 46.20 4.01
3693 14240 1.335496 GGCTTTACAACCTCGTTGCAA 59.665 47.619 0.00 0.00 46.20 4.08
3694 14241 0.948678 GGCTTTACAACCTCGTTGCA 59.051 50.000 4.46 0.00 46.20 4.08
3695 14242 1.235724 AGGCTTTACAACCTCGTTGC 58.764 50.000 4.46 0.00 46.20 4.17
3697 14244 4.454504 CACATAAGGCTTTACAACCTCGTT 59.545 41.667 4.45 0.00 34.31 3.85
3698 14245 4.000988 CACATAAGGCTTTACAACCTCGT 58.999 43.478 4.45 0.00 34.31 4.18
3699 14246 3.181510 GCACATAAGGCTTTACAACCTCG 60.182 47.826 4.45 0.00 34.31 4.63
3700 14247 3.756434 TGCACATAAGGCTTTACAACCTC 59.244 43.478 4.45 0.00 34.31 3.85
3701 14248 3.761897 TGCACATAAGGCTTTACAACCT 58.238 40.909 4.45 0.00 38.14 3.50
3702 14249 4.513198 TTGCACATAAGGCTTTACAACC 57.487 40.909 4.45 0.00 0.00 3.77
3703 14250 6.128580 CCATTTTGCACATAAGGCTTTACAAC 60.129 38.462 4.45 0.00 0.00 3.32
3704 14251 5.931146 CCATTTTGCACATAAGGCTTTACAA 59.069 36.000 4.45 0.62 0.00 2.41
3705 14252 5.244851 TCCATTTTGCACATAAGGCTTTACA 59.755 36.000 4.45 0.00 0.00 2.41
3706 14253 5.719173 TCCATTTTGCACATAAGGCTTTAC 58.281 37.500 4.45 0.00 0.00 2.01
3707 14254 5.991933 TCCATTTTGCACATAAGGCTTTA 57.008 34.783 4.45 0.00 0.00 1.85
3708 14255 4.888326 TCCATTTTGCACATAAGGCTTT 57.112 36.364 4.45 0.00 0.00 3.51
3709 14256 5.421693 TGTATCCATTTTGCACATAAGGCTT 59.578 36.000 4.58 4.58 0.00 4.35
3710 14257 4.955450 TGTATCCATTTTGCACATAAGGCT 59.045 37.500 0.00 0.00 0.00 4.58
3711 14258 5.261209 TGTATCCATTTTGCACATAAGGC 57.739 39.130 0.00 0.00 0.00 4.35
3712 14259 7.980662 TGAATTGTATCCATTTTGCACATAAGG 59.019 33.333 0.00 0.00 0.00 2.69
3713 14260 8.929827 TGAATTGTATCCATTTTGCACATAAG 57.070 30.769 0.00 0.00 0.00 1.73
3714 14261 9.315525 CATGAATTGTATCCATTTTGCACATAA 57.684 29.630 0.00 0.00 0.00 1.90
3715 14262 8.476447 ACATGAATTGTATCCATTTTGCACATA 58.524 29.630 0.00 0.00 36.57 2.29
3716 14263 7.279090 CACATGAATTGTATCCATTTTGCACAT 59.721 33.333 0.00 0.00 36.57 3.21
3717 14264 6.590677 CACATGAATTGTATCCATTTTGCACA 59.409 34.615 0.00 0.00 36.57 4.57
3718 14265 6.812656 TCACATGAATTGTATCCATTTTGCAC 59.187 34.615 0.00 0.00 36.57 4.57
3719 14266 6.932947 TCACATGAATTGTATCCATTTTGCA 58.067 32.000 0.00 0.00 36.57 4.08
3720 14267 7.259882 TCTCACATGAATTGTATCCATTTTGC 58.740 34.615 0.00 0.00 36.57 3.68
3721 14268 9.642327 TTTCTCACATGAATTGTATCCATTTTG 57.358 29.630 0.00 0.00 36.57 2.44
3726 14273 9.246670 AGAATTTTCTCACATGAATTGTATCCA 57.753 29.630 0.00 0.00 36.00 3.41
3731 14278 8.302438 GGAGAAGAATTTTCTCACATGAATTGT 58.698 33.333 21.44 0.00 45.01 2.71
3732 14279 7.758528 GGGAGAAGAATTTTCTCACATGAATTG 59.241 37.037 21.44 0.00 45.72 2.32
3733 14280 7.834803 GGGAGAAGAATTTTCTCACATGAATT 58.165 34.615 21.44 0.00 45.72 2.17
3734 14281 7.401955 GGGAGAAGAATTTTCTCACATGAAT 57.598 36.000 21.44 0.00 45.72 2.57
3735 14282 6.824305 GGGAGAAGAATTTTCTCACATGAA 57.176 37.500 21.44 0.00 45.72 2.57
3740 14287 3.935828 CGGAGGGAGAAGAATTTTCTCAC 59.064 47.826 21.44 19.67 46.54 3.51
3741 14288 3.619979 GCGGAGGGAGAAGAATTTTCTCA 60.620 47.826 21.44 0.00 45.01 3.27
3742 14289 2.939756 GCGGAGGGAGAAGAATTTTCTC 59.060 50.000 16.00 16.00 43.08 2.87
3743 14290 2.678190 CGCGGAGGGAGAAGAATTTTCT 60.678 50.000 0.00 3.49 46.37 2.52
3744 14291 1.666189 CGCGGAGGGAGAAGAATTTTC 59.334 52.381 0.00 0.00 46.37 2.29
3745 14292 1.679032 CCGCGGAGGGAGAAGAATTTT 60.679 52.381 24.07 0.00 46.37 1.82
3746 14293 0.107654 CCGCGGAGGGAGAAGAATTT 60.108 55.000 24.07 0.00 46.37 1.82
3747 14294 1.265454 ACCGCGGAGGGAGAAGAATT 61.265 55.000 35.90 0.00 46.37 2.17
3748 14295 1.686110 ACCGCGGAGGGAGAAGAAT 60.686 57.895 35.90 0.00 46.37 2.40
3749 14296 2.283676 ACCGCGGAGGGAGAAGAA 60.284 61.111 35.90 0.00 46.37 2.52
3750 14297 3.068691 CACCGCGGAGGGAGAAGA 61.069 66.667 35.90 0.00 46.37 2.87
3751 14298 2.167398 TTTCACCGCGGAGGGAGAAG 62.167 60.000 35.90 10.45 46.37 2.85
3752 14299 1.550130 ATTTCACCGCGGAGGGAGAA 61.550 55.000 35.90 22.27 46.37 2.87
3753 14300 1.550130 AATTTCACCGCGGAGGGAGA 61.550 55.000 35.90 20.63 46.37 3.71
3754 14301 0.177141 TAATTTCACCGCGGAGGGAG 59.823 55.000 35.90 15.62 46.37 4.30
3755 14302 0.614294 TTAATTTCACCGCGGAGGGA 59.386 50.000 35.90 22.73 46.37 4.20
3756 14303 1.455248 TTTAATTTCACCGCGGAGGG 58.545 50.000 35.90 20.66 46.96 4.30
3856 14407 4.163427 TCTGGGTCTGAAGAATGAACTCT 58.837 43.478 0.00 0.00 0.00 3.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.