Multiple sequence alignment - TraesCS4D01G328900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G328900 chr4D 100.000 3369 0 0 1 3369 487231114 487227746 0.000000e+00 6222.0
1 TraesCS4D01G328900 chr4D 85.637 1852 143 53 631 2369 487121253 487119412 0.000000e+00 1832.0
2 TraesCS4D01G328900 chr4D 86.903 1298 93 30 710 1937 487291425 487290135 0.000000e+00 1384.0
3 TraesCS4D01G328900 chr4D 87.001 1277 102 35 708 1937 487345996 487344737 0.000000e+00 1380.0
4 TraesCS4D01G328900 chr4D 91.727 689 49 6 2447 3134 487288867 487288186 0.000000e+00 950.0
5 TraesCS4D01G328900 chr4D 90.210 715 44 11 1679 2369 487296111 487295399 0.000000e+00 909.0
6 TraesCS4D01G328900 chr4D 94.251 574 29 2 2442 3013 487343610 487343039 0.000000e+00 874.0
7 TraesCS4D01G328900 chr4D 90.081 615 51 7 2407 3012 487295315 487294702 0.000000e+00 789.0
8 TraesCS4D01G328900 chr4D 95.643 459 18 1 2439 2897 487119257 487118801 0.000000e+00 736.0
9 TraesCS4D01G328900 chr4D 86.525 423 33 15 1965 2369 487344184 487343768 8.580000e-121 444.0
10 TraesCS4D01G328900 chr4D 99.578 237 1 0 3133 3369 478961416 478961652 1.860000e-117 433.0
11 TraesCS4D01G328900 chr4D 85.446 426 36 12 1965 2369 487289583 487289163 1.450000e-113 420.0
12 TraesCS4D01G328900 chr4D 82.411 506 43 19 631 1094 487296696 487296195 1.880000e-107 399.0
13 TraesCS4D01G328900 chr4D 93.827 81 3 2 589 667 487346084 487346004 1.640000e-23 121.0
14 TraesCS4D01G328900 chr5A 87.493 1863 136 40 590 2369 668581131 668579283 0.000000e+00 2060.0
15 TraesCS4D01G328900 chr5A 86.335 1427 121 39 986 2369 668272111 668270716 0.000000e+00 1487.0
16 TraesCS4D01G328900 chr5A 85.578 1151 104 29 872 1971 668226872 668225733 0.000000e+00 1149.0
17 TraesCS4D01G328900 chr5A 90.336 714 50 5 2420 3129 668769879 668770577 0.000000e+00 918.0
18 TraesCS4D01G328900 chr5A 93.097 536 27 4 2414 2943 668225159 668224628 0.000000e+00 776.0
19 TraesCS4D01G328900 chr5A 93.333 525 29 3 2416 2935 668579153 668578630 0.000000e+00 771.0
20 TraesCS4D01G328900 chr5A 93.922 510 24 2 2439 2943 668270560 668270053 0.000000e+00 763.0
21 TraesCS4D01G328900 chr5A 89.461 427 31 12 1952 2369 668225720 668225299 8.280000e-146 527.0
22 TraesCS4D01G328900 chr5A 82.469 405 46 19 589 975 668273969 668273572 6.970000e-87 331.0
23 TraesCS4D01G328900 chr4B 83.473 1549 129 60 903 2369 622335087 622333584 0.000000e+00 1325.0
24 TraesCS4D01G328900 chr4B 84.809 1389 117 42 629 1937 622438008 622436634 0.000000e+00 1310.0
25 TraesCS4D01G328900 chr4B 84.225 1084 91 38 914 1937 622478641 622477578 0.000000e+00 981.0
26 TraesCS4D01G328900 chr4B 86.987 853 63 18 1989 2800 622615312 622614467 0.000000e+00 917.0
27 TraesCS4D01G328900 chr4B 84.892 417 45 10 1965 2369 622477027 622476617 4.050000e-109 405.0
28 TraesCS4D01G328900 chr4B 91.603 262 20 1 1699 1960 622615566 622615307 8.890000e-96 361.0
29 TraesCS4D01G328900 chr4B 87.417 302 16 6 589 886 622480110 622479827 9.010000e-86 327.0
30 TraesCS4D01G328900 chr4B 86.364 154 11 7 2266 2417 622133652 622133507 3.480000e-35 159.0
31 TraesCS4D01G328900 chr4B 95.385 65 3 0 511 575 622480344 622480280 1.650000e-18 104.0
32 TraesCS4D01G328900 chr4B 95.161 62 3 0 514 575 622440082 622440021 7.690000e-17 99.0
33 TraesCS4D01G328900 chr4B 97.297 37 1 0 3069 3105 209306401 209306437 2.810000e-06 63.9
34 TraesCS4D01G328900 chrUn 84.798 1388 118 40 629 1937 60287518 60288891 0.000000e+00 1308.0
35 TraesCS4D01G328900 chrUn 84.737 1389 118 42 629 1937 60350201 60348827 0.000000e+00 1304.0
36 TraesCS4D01G328900 chrUn 89.889 722 50 11 2415 3134 363200483 363201183 0.000000e+00 907.0
37 TraesCS4D01G328900 chrUn 85.067 596 46 21 629 1187 60320013 60319424 4.880000e-158 568.0
38 TraesCS4D01G328900 chrUn 91.989 362 22 3 2769 3129 60277637 60277992 5.020000e-138 501.0
39 TraesCS4D01G328900 chrUn 91.989 362 22 3 2769 3129 60329599 60329244 5.020000e-138 501.0
40 TraesCS4D01G328900 chrUn 91.989 362 22 3 2769 3129 60360867 60360512 5.020000e-138 501.0
41 TraesCS4D01G328900 chrUn 100.000 235 0 0 3135 3369 152288756 152288522 5.160000e-118 435.0
42 TraesCS4D01G328900 chrUn 84.706 425 41 15 1965 2369 60348274 60347854 1.460000e-108 403.0
43 TraesCS4D01G328900 chrUn 83.333 306 29 13 2084 2369 60289967 60290270 2.580000e-66 263.0
44 TraesCS4D01G328900 chrUn 83.333 306 29 13 2084 2369 363200045 363200348 2.580000e-66 263.0
45 TraesCS4D01G328900 chrUn 90.452 199 16 2 2937 3134 453468938 453468742 3.330000e-65 259.0
46 TraesCS4D01G328900 chrUn 95.161 62 3 0 511 572 60285562 60285623 7.690000e-17 99.0
47 TraesCS4D01G328900 chrUn 95.161 62 3 0 514 575 60322087 60322026 7.690000e-17 99.0
48 TraesCS4D01G328900 chr1D 86.338 527 52 10 1 509 296632223 296632747 1.060000e-154 556.0
49 TraesCS4D01G328900 chr1D 85.822 529 53 11 1 510 213374046 213374571 2.960000e-150 542.0
50 TraesCS4D01G328900 chr7D 86.389 529 46 13 1 509 636717470 636716948 3.800000e-154 555.0
51 TraesCS4D01G328900 chr7D 85.985 528 53 11 1 510 7528048 7528572 2.290000e-151 545.0
52 TraesCS4D01G328900 chr7D 100.000 236 0 0 3134 3369 15428652 15428417 1.440000e-118 436.0
53 TraesCS4D01G328900 chr7D 100.000 235 0 0 3135 3369 32903901 32903667 5.160000e-118 435.0
54 TraesCS4D01G328900 chr7D 99.578 237 0 1 3133 3369 25716454 25716219 6.680000e-117 431.0
55 TraesCS4D01G328900 chr7A 85.795 528 52 11 1 509 634327584 634328107 3.820000e-149 538.0
56 TraesCS4D01G328900 chr2A 85.660 530 52 12 1 509 515503493 515502967 1.380000e-148 536.0
57 TraesCS4D01G328900 chr6D 88.315 445 46 5 1 441 460866133 460865691 2.300000e-146 529.0
58 TraesCS4D01G328900 chr2D 88.539 445 38 6 1 441 586856863 586857298 8.280000e-146 527.0
59 TraesCS4D01G328900 chr2B 85.253 495 62 5 1 486 154597142 154597634 1.800000e-137 499.0
60 TraesCS4D01G328900 chr3D 83.939 523 64 11 4 509 570157833 570157314 1.820000e-132 483.0
61 TraesCS4D01G328900 chr3D 100.000 235 0 0 3135 3369 569036364 569036598 5.160000e-118 435.0
62 TraesCS4D01G328900 chr5D 99.582 239 1 0 3131 3369 546553381 546553619 1.440000e-118 436.0
63 TraesCS4D01G328900 chr5D 100.000 235 0 0 3135 3369 14723199 14723433 5.160000e-118 435.0
64 TraesCS4D01G328900 chr5D 99.578 237 1 0 3133 3369 55004320 55004556 1.860000e-117 433.0
65 TraesCS4D01G328900 chr1A 95.000 40 2 0 3069 3108 22569630 22569591 2.810000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G328900 chr4D 487227746 487231114 3368 True 6222.000000 6222 100.000000 1 3369 1 chr4D.!!$R1 3368
1 TraesCS4D01G328900 chr4D 487118801 487121253 2452 True 1284.000000 1832 90.640000 631 2897 2 chr4D.!!$R2 2266
2 TraesCS4D01G328900 chr4D 487288186 487296696 8510 True 808.500000 1384 87.796333 631 3134 6 chr4D.!!$R3 2503
3 TraesCS4D01G328900 chr4D 487343039 487346084 3045 True 704.750000 1380 90.401000 589 3013 4 chr4D.!!$R4 2424
4 TraesCS4D01G328900 chr5A 668578630 668581131 2501 True 1415.500000 2060 90.413000 590 2935 2 chr5A.!!$R3 2345
5 TraesCS4D01G328900 chr5A 668769879 668770577 698 False 918.000000 918 90.336000 2420 3129 1 chr5A.!!$F1 709
6 TraesCS4D01G328900 chr5A 668270053 668273969 3916 True 860.333333 1487 87.575333 589 2943 3 chr5A.!!$R2 2354
7 TraesCS4D01G328900 chr5A 668224628 668226872 2244 True 817.333333 1149 89.378667 872 2943 3 chr5A.!!$R1 2071
8 TraesCS4D01G328900 chr4B 622333584 622335087 1503 True 1325.000000 1325 83.473000 903 2369 1 chr4B.!!$R2 1466
9 TraesCS4D01G328900 chr4B 622436634 622440082 3448 True 704.500000 1310 89.985000 514 1937 2 chr4B.!!$R3 1423
10 TraesCS4D01G328900 chr4B 622614467 622615566 1099 True 639.000000 917 89.295000 1699 2800 2 chr4B.!!$R5 1101
11 TraesCS4D01G328900 chr4B 622476617 622480344 3727 True 454.250000 981 87.979750 511 2369 4 chr4B.!!$R4 1858
12 TraesCS4D01G328900 chrUn 60347854 60350201 2347 True 853.500000 1304 84.721500 629 2369 2 chrUn.!!$R6 1740
13 TraesCS4D01G328900 chrUn 363200045 363201183 1138 False 585.000000 907 86.611000 2084 3134 2 chrUn.!!$F3 1050
14 TraesCS4D01G328900 chrUn 60285562 60290270 4708 False 556.666667 1308 87.764000 511 2369 3 chrUn.!!$F2 1858
15 TraesCS4D01G328900 chrUn 60319424 60322087 2663 True 333.500000 568 90.114000 514 1187 2 chrUn.!!$R5 673
16 TraesCS4D01G328900 chr1D 296632223 296632747 524 False 556.000000 556 86.338000 1 509 1 chr1D.!!$F2 508
17 TraesCS4D01G328900 chr1D 213374046 213374571 525 False 542.000000 542 85.822000 1 510 1 chr1D.!!$F1 509
18 TraesCS4D01G328900 chr7D 636716948 636717470 522 True 555.000000 555 86.389000 1 509 1 chr7D.!!$R4 508
19 TraesCS4D01G328900 chr7D 7528048 7528572 524 False 545.000000 545 85.985000 1 510 1 chr7D.!!$F1 509
20 TraesCS4D01G328900 chr7A 634327584 634328107 523 False 538.000000 538 85.795000 1 509 1 chr7A.!!$F1 508
21 TraesCS4D01G328900 chr2A 515502967 515503493 526 True 536.000000 536 85.660000 1 509 1 chr2A.!!$R1 508
22 TraesCS4D01G328900 chr3D 570157314 570157833 519 True 483.000000 483 83.939000 4 509 1 chr3D.!!$R1 505

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
666 2670 0.322456 TTTCTGCCTGATCAACCCGG 60.322 55.0 0.00 0.0 0.00 5.73 F
1266 11134 0.958876 TCGACTGCCTCAGCGAAGTA 60.959 55.0 9.58 0.0 44.31 2.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1886 11872 0.106015 TCCTCATCGGCATCTCCTCA 60.106 55.0 0.00 0.0 0.0 3.86 R
3206 14484 0.103572 GGGGTCTTTAGTCGCGCATA 59.896 55.0 8.75 0.0 0.0 3.14 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 48 1.442017 GCCATTGCCGTTGAACGAC 60.442 57.895 20.47 8.44 46.05 4.34
122 123 0.458025 CCCAACTAAGACGTCGGAGC 60.458 60.000 16.74 0.00 0.00 4.70
149 150 0.676466 CATACCTGCCTGCCACGAAA 60.676 55.000 0.00 0.00 0.00 3.46
190 191 3.986996 TCTTCCAGATGCTGTCAATGA 57.013 42.857 0.00 0.00 0.00 2.57
191 192 3.870274 TCTTCCAGATGCTGTCAATGAG 58.130 45.455 0.00 0.00 0.00 2.90
210 211 0.392998 GGACCACAATCTGCATCCGT 60.393 55.000 0.00 0.00 0.00 4.69
215 216 2.419990 CCACAATCTGCATCCGTTCCTA 60.420 50.000 0.00 0.00 0.00 2.94
222 223 2.688446 CTGCATCCGTTCCTAGACTACA 59.312 50.000 0.00 0.00 0.00 2.74
263 265 4.430423 GAGCAAACGCCGTCGCAG 62.430 66.667 13.17 0.00 39.84 5.18
324 332 1.307647 GCCATCCCACCATCCTTGT 59.692 57.895 0.00 0.00 0.00 3.16
341 349 4.770010 TCCTTGTTTGAACAGTCTGGTTTT 59.230 37.500 4.53 0.00 40.50 2.43
343 351 4.712122 TGTTTGAACAGTCTGGTTTTCC 57.288 40.909 4.53 0.00 36.02 3.13
344 352 3.445805 TGTTTGAACAGTCTGGTTTTCCC 59.554 43.478 4.53 0.00 35.21 3.97
348 356 3.117701 TGAACAGTCTGGTTTTCCCATCA 60.118 43.478 4.53 0.00 44.15 3.07
349 357 2.863809 ACAGTCTGGTTTTCCCATCAC 58.136 47.619 4.53 0.00 44.15 3.06
350 358 2.174639 ACAGTCTGGTTTTCCCATCACA 59.825 45.455 4.53 0.00 44.15 3.58
351 359 3.221771 CAGTCTGGTTTTCCCATCACAA 58.778 45.455 0.00 0.00 44.15 3.33
352 360 3.636300 CAGTCTGGTTTTCCCATCACAAA 59.364 43.478 0.00 0.00 44.15 2.83
353 361 4.099266 CAGTCTGGTTTTCCCATCACAAAA 59.901 41.667 0.00 0.00 44.15 2.44
354 362 4.342092 AGTCTGGTTTTCCCATCACAAAAG 59.658 41.667 0.00 0.00 44.15 2.27
355 363 3.069443 TCTGGTTTTCCCATCACAAAAGC 59.931 43.478 0.00 0.00 44.15 3.51
356 364 2.223923 TGGTTTTCCCATCACAAAAGCG 60.224 45.455 0.00 0.00 41.03 4.68
357 365 2.403259 GTTTTCCCATCACAAAAGCGG 58.597 47.619 0.00 0.00 0.00 5.52
358 366 1.988293 TTTCCCATCACAAAAGCGGA 58.012 45.000 0.00 0.00 0.00 5.54
359 367 2.214376 TTCCCATCACAAAAGCGGAT 57.786 45.000 0.00 0.00 0.00 4.18
360 368 1.750193 TCCCATCACAAAAGCGGATC 58.250 50.000 0.00 0.00 0.00 3.36
361 369 0.378257 CCCATCACAAAAGCGGATCG 59.622 55.000 0.00 0.00 0.00 3.69
379 387 3.381388 GCCTTGTTGGGGAAGGATT 57.619 52.632 0.00 0.00 42.44 3.01
380 388 1.644509 GCCTTGTTGGGGAAGGATTT 58.355 50.000 0.00 0.00 42.44 2.17
381 389 1.276138 GCCTTGTTGGGGAAGGATTTG 59.724 52.381 0.00 0.00 42.44 2.32
382 390 2.888212 CCTTGTTGGGGAAGGATTTGA 58.112 47.619 0.00 0.00 42.44 2.69
383 391 3.238597 CCTTGTTGGGGAAGGATTTGAA 58.761 45.455 0.00 0.00 42.44 2.69
384 392 3.259123 CCTTGTTGGGGAAGGATTTGAAG 59.741 47.826 0.00 0.00 42.44 3.02
385 393 3.893753 TGTTGGGGAAGGATTTGAAGA 57.106 42.857 0.00 0.00 0.00 2.87
386 394 4.402616 TGTTGGGGAAGGATTTGAAGAT 57.597 40.909 0.00 0.00 0.00 2.40
387 395 4.750941 TGTTGGGGAAGGATTTGAAGATT 58.249 39.130 0.00 0.00 0.00 2.40
388 396 5.154418 TGTTGGGGAAGGATTTGAAGATTT 58.846 37.500 0.00 0.00 0.00 2.17
389 397 6.318913 TGTTGGGGAAGGATTTGAAGATTTA 58.681 36.000 0.00 0.00 0.00 1.40
390 398 6.959366 TGTTGGGGAAGGATTTGAAGATTTAT 59.041 34.615 0.00 0.00 0.00 1.40
391 399 7.457535 TGTTGGGGAAGGATTTGAAGATTTATT 59.542 33.333 0.00 0.00 0.00 1.40
392 400 8.321353 GTTGGGGAAGGATTTGAAGATTTATTT 58.679 33.333 0.00 0.00 0.00 1.40
393 401 7.850193 TGGGGAAGGATTTGAAGATTTATTTG 58.150 34.615 0.00 0.00 0.00 2.32
394 402 7.457535 TGGGGAAGGATTTGAAGATTTATTTGT 59.542 33.333 0.00 0.00 0.00 2.83
395 403 7.981789 GGGGAAGGATTTGAAGATTTATTTGTC 59.018 37.037 0.00 0.00 0.00 3.18
396 404 7.702348 GGGAAGGATTTGAAGATTTATTTGTCG 59.298 37.037 0.00 0.00 0.00 4.35
397 405 7.702348 GGAAGGATTTGAAGATTTATTTGTCGG 59.298 37.037 0.00 0.00 0.00 4.79
398 406 6.564328 AGGATTTGAAGATTTATTTGTCGGC 58.436 36.000 0.00 0.00 0.00 5.54
399 407 5.455525 GGATTTGAAGATTTATTTGTCGGCG 59.544 40.000 0.00 0.00 0.00 6.46
400 408 3.398954 TGAAGATTTATTTGTCGGCGC 57.601 42.857 0.00 0.00 0.00 6.53
401 409 2.096819 TGAAGATTTATTTGTCGGCGCC 59.903 45.455 19.07 19.07 0.00 6.53
402 410 0.655733 AGATTTATTTGTCGGCGCCG 59.344 50.000 42.13 42.13 41.35 6.46
403 411 0.928451 GATTTATTTGTCGGCGCCGC 60.928 55.000 42.78 34.68 39.59 6.53
404 412 2.331019 ATTTATTTGTCGGCGCCGCC 62.331 55.000 42.78 34.66 46.75 6.13
426 434 3.814268 CCACCGCCGAAGCCAATG 61.814 66.667 0.00 0.00 34.57 2.82
427 435 2.745884 CACCGCCGAAGCCAATGA 60.746 61.111 0.00 0.00 34.57 2.57
428 436 2.746277 ACCGCCGAAGCCAATGAC 60.746 61.111 0.00 0.00 34.57 3.06
429 437 3.864686 CCGCCGAAGCCAATGACG 61.865 66.667 0.00 0.00 34.57 4.35
430 438 2.813474 CGCCGAAGCCAATGACGA 60.813 61.111 0.00 0.00 34.57 4.20
431 439 2.173669 CGCCGAAGCCAATGACGAT 61.174 57.895 0.00 0.00 34.57 3.73
432 440 0.874175 CGCCGAAGCCAATGACGATA 60.874 55.000 0.00 0.00 34.57 2.92
433 441 1.295792 GCCGAAGCCAATGACGATAA 58.704 50.000 0.00 0.00 0.00 1.75
434 442 1.668751 GCCGAAGCCAATGACGATAAA 59.331 47.619 0.00 0.00 0.00 1.40
435 443 2.538939 GCCGAAGCCAATGACGATAAAC 60.539 50.000 0.00 0.00 0.00 2.01
436 444 2.675844 CCGAAGCCAATGACGATAAACA 59.324 45.455 0.00 0.00 0.00 2.83
437 445 3.126171 CCGAAGCCAATGACGATAAACAA 59.874 43.478 0.00 0.00 0.00 2.83
438 446 4.088648 CGAAGCCAATGACGATAAACAAC 58.911 43.478 0.00 0.00 0.00 3.32
439 447 4.412207 GAAGCCAATGACGATAAACAACC 58.588 43.478 0.00 0.00 0.00 3.77
440 448 2.752903 AGCCAATGACGATAAACAACCC 59.247 45.455 0.00 0.00 0.00 4.11
441 449 2.752903 GCCAATGACGATAAACAACCCT 59.247 45.455 0.00 0.00 0.00 4.34
442 450 3.181500 GCCAATGACGATAAACAACCCTC 60.181 47.826 0.00 0.00 0.00 4.30
443 451 4.261801 CCAATGACGATAAACAACCCTCT 58.738 43.478 0.00 0.00 0.00 3.69
444 452 5.424757 CCAATGACGATAAACAACCCTCTA 58.575 41.667 0.00 0.00 0.00 2.43
445 453 5.878116 CCAATGACGATAAACAACCCTCTAA 59.122 40.000 0.00 0.00 0.00 2.10
446 454 6.542370 CCAATGACGATAAACAACCCTCTAAT 59.458 38.462 0.00 0.00 0.00 1.73
447 455 7.409697 CAATGACGATAAACAACCCTCTAATG 58.590 38.462 0.00 0.00 0.00 1.90
448 456 6.045072 TGACGATAAACAACCCTCTAATGT 57.955 37.500 0.00 0.00 0.00 2.71
449 457 6.103997 TGACGATAAACAACCCTCTAATGTC 58.896 40.000 0.00 0.00 0.00 3.06
450 458 6.070995 TGACGATAAACAACCCTCTAATGTCT 60.071 38.462 0.00 0.00 0.00 3.41
451 459 7.123098 TGACGATAAACAACCCTCTAATGTCTA 59.877 37.037 0.00 0.00 0.00 2.59
452 460 7.844009 ACGATAAACAACCCTCTAATGTCTAA 58.156 34.615 0.00 0.00 0.00 2.10
453 461 8.316214 ACGATAAACAACCCTCTAATGTCTAAA 58.684 33.333 0.00 0.00 0.00 1.85
454 462 9.158233 CGATAAACAACCCTCTAATGTCTAAAA 57.842 33.333 0.00 0.00 0.00 1.52
456 464 9.802039 ATAAACAACCCTCTAATGTCTAAAACA 57.198 29.630 0.00 0.00 43.51 2.83
457 465 8.528044 AAACAACCCTCTAATGTCTAAAACAA 57.472 30.769 0.00 0.00 42.37 2.83
458 466 8.706322 AACAACCCTCTAATGTCTAAAACAAT 57.294 30.769 0.00 0.00 42.37 2.71
459 467 8.706322 ACAACCCTCTAATGTCTAAAACAATT 57.294 30.769 0.00 0.00 42.37 2.32
460 468 8.793592 ACAACCCTCTAATGTCTAAAACAATTC 58.206 33.333 0.00 0.00 42.37 2.17
461 469 8.792633 CAACCCTCTAATGTCTAAAACAATTCA 58.207 33.333 0.00 0.00 42.37 2.57
462 470 8.336801 ACCCTCTAATGTCTAAAACAATTCAC 57.663 34.615 0.00 0.00 42.37 3.18
463 471 7.942341 ACCCTCTAATGTCTAAAACAATTCACA 59.058 33.333 0.00 0.00 42.37 3.58
464 472 8.237267 CCCTCTAATGTCTAAAACAATTCACAC 58.763 37.037 0.00 0.00 42.37 3.82
465 473 8.783093 CCTCTAATGTCTAAAACAATTCACACA 58.217 33.333 0.00 0.00 42.37 3.72
466 474 9.599322 CTCTAATGTCTAAAACAATTCACACAC 57.401 33.333 0.00 0.00 42.37 3.82
467 475 8.279800 TCTAATGTCTAAAACAATTCACACACG 58.720 33.333 0.00 0.00 42.37 4.49
468 476 5.804692 TGTCTAAAACAATTCACACACGT 57.195 34.783 0.00 0.00 34.03 4.49
469 477 5.564768 TGTCTAAAACAATTCACACACGTG 58.435 37.500 15.48 15.48 38.64 4.49
470 478 4.967575 GTCTAAAACAATTCACACACGTGG 59.032 41.667 21.57 11.39 43.79 4.94
471 479 4.876679 TCTAAAACAATTCACACACGTGGA 59.123 37.500 21.57 4.54 43.79 4.02
472 480 4.647424 AAAACAATTCACACACGTGGAT 57.353 36.364 21.57 3.98 43.72 3.41
473 481 3.896648 AACAATTCACACACGTGGATC 57.103 42.857 21.57 0.00 40.75 3.36
474 482 2.151202 ACAATTCACACACGTGGATCC 58.849 47.619 21.57 4.20 40.75 3.36
475 483 1.128507 CAATTCACACACGTGGATCCG 59.871 52.381 21.57 5.12 40.75 4.18
476 484 0.391130 ATTCACACACGTGGATCCGG 60.391 55.000 21.57 4.01 36.56 5.14
477 485 3.118454 CACACACGTGGATCCGGC 61.118 66.667 21.57 1.37 39.64 6.13
478 486 4.735132 ACACACGTGGATCCGGCG 62.735 66.667 21.57 21.94 34.19 6.46
479 487 4.429212 CACACGTGGATCCGGCGA 62.429 66.667 27.84 0.39 0.00 5.54
480 488 4.430765 ACACGTGGATCCGGCGAC 62.431 66.667 27.84 11.85 0.00 5.19
563 571 7.129109 TCGTCATTAAACAAGAACAAGATCC 57.871 36.000 0.00 0.00 0.00 3.36
572 580 5.189180 ACAAGAACAAGATCCCTGATTAGC 58.811 41.667 0.00 0.00 0.00 3.09
575 583 1.417890 ACAAGATCCCTGATTAGCCCG 59.582 52.381 0.00 0.00 0.00 6.13
576 584 1.417890 CAAGATCCCTGATTAGCCCGT 59.582 52.381 0.00 0.00 0.00 5.28
577 585 1.051812 AGATCCCTGATTAGCCCGTG 58.948 55.000 0.00 0.00 0.00 4.94
578 586 0.603975 GATCCCTGATTAGCCCGTGC 60.604 60.000 0.00 0.00 37.95 5.34
579 587 2.056906 ATCCCTGATTAGCCCGTGCC 62.057 60.000 0.00 0.00 38.69 5.01
580 588 2.589540 CCTGATTAGCCCGTGCCA 59.410 61.111 0.00 0.00 38.69 4.92
581 589 1.077787 CCTGATTAGCCCGTGCCAA 60.078 57.895 0.00 0.00 38.69 4.52
583 591 0.392998 CTGATTAGCCCGTGCCAACT 60.393 55.000 0.00 0.00 38.69 3.16
584 592 0.392461 TGATTAGCCCGTGCCAACTC 60.392 55.000 0.00 0.00 38.69 3.01
608 776 5.359860 CGCCCTCCCAAAGAGTTAAAATAAT 59.640 40.000 0.00 0.00 41.47 1.28
666 2670 0.322456 TTTCTGCCTGATCAACCCGG 60.322 55.000 0.00 0.00 0.00 5.73
667 2671 1.488705 TTCTGCCTGATCAACCCGGT 61.489 55.000 0.00 0.00 0.00 5.28
668 2672 1.746615 CTGCCTGATCAACCCGGTG 60.747 63.158 0.00 0.00 0.00 4.94
669 2673 3.134127 GCCTGATCAACCCGGTGC 61.134 66.667 0.00 0.00 0.00 5.01
670 2674 2.350895 CCTGATCAACCCGGTGCA 59.649 61.111 0.00 0.00 0.00 4.57
671 2675 1.746615 CCTGATCAACCCGGTGCAG 60.747 63.158 0.00 0.00 0.00 4.41
672 2676 2.359850 TGATCAACCCGGTGCAGC 60.360 61.111 5.64 5.64 0.00 5.25
673 2677 3.134127 GATCAACCCGGTGCAGCC 61.134 66.667 10.90 2.64 0.00 4.85
674 2678 3.918253 GATCAACCCGGTGCAGCCA 62.918 63.158 10.90 0.00 36.97 4.75
675 2679 3.925630 ATCAACCCGGTGCAGCCAG 62.926 63.158 10.90 4.19 36.97 4.85
898 2959 1.506309 CTACTGCCGTGTTGCTTGCA 61.506 55.000 0.00 0.00 0.00 4.08
900 2961 4.268939 TGCCGTGTTGCTTGCAGC 62.269 61.111 2.51 2.51 42.82 5.25
901 2962 3.969802 GCCGTGTTGCTTGCAGCT 61.970 61.111 10.50 0.00 42.97 4.24
964 4173 5.694995 TGGGATAGAAATTAAGGGAAGCAG 58.305 41.667 0.00 0.00 0.00 4.24
975 4185 6.454223 TTAAGGGAAGCAGGCATATTCTAT 57.546 37.500 0.00 0.00 0.00 1.98
976 4186 5.330648 AAGGGAAGCAGGCATATTCTATT 57.669 39.130 0.00 0.00 0.00 1.73
1089 10933 4.530857 GCTCCGTGGCAGGCGTAT 62.531 66.667 0.70 0.00 0.00 3.06
1266 11134 0.958876 TCGACTGCCTCAGCGAAGTA 60.959 55.000 9.58 0.00 44.31 2.24
1281 11149 1.669265 GAAGTATGCAACCCTTACGGC 59.331 52.381 0.00 0.00 33.26 5.68
1304 11175 4.178214 CGTCGGCGGCGTACCTAA 62.178 66.667 31.06 7.80 0.00 2.69
1350 11239 3.151906 GCGTATGCCCTCCAGGAT 58.848 61.111 0.00 0.00 38.24 3.24
1360 11249 4.881440 TCCAGGATGCCATGGCGC 62.881 66.667 30.87 24.17 45.51 6.53
1402 11291 4.262089 TGCATCACGGTGGTGGCA 62.262 61.111 21.95 18.02 44.50 4.92
1475 11370 4.554036 GGAGATGACCAGGGGCGC 62.554 72.222 0.00 0.00 0.00 6.53
1512 11407 1.941668 GCTAGAAGCAAGCTCAACGGT 60.942 52.381 0.00 0.00 41.89 4.83
1619 11522 3.497763 CCCAAGATTACCAAGGTGTGTGA 60.498 47.826 1.07 0.00 0.00 3.58
1647 11565 2.079158 CAACTCGCATTGTCCTGTGAT 58.921 47.619 0.00 0.00 35.27 3.06
1956 11971 5.585390 GGCAACTGATCAAATTACAGGATG 58.415 41.667 0.00 0.00 46.00 3.51
1967 12508 7.988737 TCAAATTACAGGATGCAGACATAAAG 58.011 34.615 0.00 0.00 42.53 1.85
2020 12593 4.070552 GAGAAGCAGGGCGACGGT 62.071 66.667 0.00 0.00 0.00 4.83
2021 12594 4.379243 AGAAGCAGGGCGACGGTG 62.379 66.667 0.00 0.00 0.00 4.94
2110 13055 1.198094 TGTTGGGGCTGGAGATCGAA 61.198 55.000 0.00 0.00 0.00 3.71
2185 13130 5.938125 ACAAGTAAGGAATTAATCGTGTGCT 59.062 36.000 0.00 0.00 0.00 4.40
2186 13131 6.128282 ACAAGTAAGGAATTAATCGTGTGCTG 60.128 38.462 0.00 0.00 0.00 4.41
2187 13132 5.730550 AGTAAGGAATTAATCGTGTGCTGA 58.269 37.500 0.00 0.00 0.00 4.26
2189 13134 7.497595 AGTAAGGAATTAATCGTGTGCTGATA 58.502 34.615 0.00 0.00 0.00 2.15
2191 13136 7.426929 AAGGAATTAATCGTGTGCTGATATC 57.573 36.000 0.00 0.00 0.00 1.63
2192 13137 5.635280 AGGAATTAATCGTGTGCTGATATCG 59.365 40.000 0.00 0.00 0.00 2.92
2223 13179 3.979101 TTTCCATTGATTTCTTGGCCC 57.021 42.857 0.00 0.00 0.00 5.80
2231 13196 4.853468 TGATTTCTTGGCCCAGTACATA 57.147 40.909 0.00 0.00 0.00 2.29
2236 13201 6.926630 TTTCTTGGCCCAGTACATATTTTT 57.073 33.333 0.00 0.00 0.00 1.94
2271 13270 1.891919 GATGCGTGGTGTGTGTGGT 60.892 57.895 0.00 0.00 0.00 4.16
2299 13298 2.364448 GAGGAAGGGAGGAGCCGT 60.364 66.667 0.00 0.00 37.63 5.68
2308 13307 1.666011 GAGGAGCCGTGTGACAAGA 59.334 57.895 0.00 0.00 0.00 3.02
2407 13454 8.462143 TTTGTAATATTCGTCTGTGAGTTCTC 57.538 34.615 0.00 0.00 0.00 2.87
2510 13752 0.756070 TGGGTGTGTGTCCGTGAGTA 60.756 55.000 0.00 0.00 0.00 2.59
2600 13865 4.211794 CCAATCTGTTGTTGCATTTGGTTC 59.788 41.667 0.00 0.00 33.36 3.62
2725 13996 1.065053 TGGGTACACATATGGGCACAC 60.065 52.381 10.49 7.15 0.00 3.82
2742 14013 1.133823 ACACATGAACAAGCCCTGACA 60.134 47.619 0.00 0.00 0.00 3.58
2747 14018 3.126001 TGAACAAGCCCTGACAAGTAG 57.874 47.619 0.00 0.00 0.00 2.57
2761 14032 5.183969 TGACAAGTAGCTCTCGTACTGTAT 58.816 41.667 0.00 0.00 30.90 2.29
2922 14195 2.568623 ACTGGAGACAAACATCCACC 57.431 50.000 0.00 0.00 40.70 4.61
3044 14322 9.911788 CCAATAACATTTATAGATGCTCCCTAT 57.088 33.333 3.23 0.00 0.00 2.57
3073 14351 8.567285 AACTTCTTGGTATTGATACTTTCCAG 57.433 34.615 1.56 0.00 33.81 3.86
3103 14381 4.347876 TCTGAGTTCATTCTTCAGACCCAA 59.652 41.667 0.00 0.00 33.17 4.12
3139 14417 7.639113 TTTTAAATATGGAAGCCTACACTGG 57.361 36.000 0.00 0.00 0.00 4.00
3140 14418 4.862641 AAATATGGAAGCCTACACTGGT 57.137 40.909 0.00 0.00 0.00 4.00
3141 14419 5.968676 AAATATGGAAGCCTACACTGGTA 57.031 39.130 0.00 0.00 0.00 3.25
3142 14420 5.552870 AATATGGAAGCCTACACTGGTAG 57.447 43.478 0.00 0.00 45.41 3.18
3163 14441 1.919240 AAAAAGCCCTTTAGTCCCGG 58.081 50.000 0.00 0.00 31.63 5.73
3164 14442 0.775542 AAAAGCCCTTTAGTCCCGGT 59.224 50.000 0.00 0.00 31.63 5.28
3165 14443 0.775542 AAAGCCCTTTAGTCCCGGTT 59.224 50.000 0.00 0.00 0.00 4.44
3166 14444 0.327259 AAGCCCTTTAGTCCCGGTTC 59.673 55.000 0.00 0.00 0.00 3.62
3167 14445 1.449070 GCCCTTTAGTCCCGGTTCG 60.449 63.158 0.00 0.00 0.00 3.95
3168 14446 1.449070 CCCTTTAGTCCCGGTTCGC 60.449 63.158 0.00 0.00 0.00 4.70
3169 14447 1.294138 CCTTTAGTCCCGGTTCGCA 59.706 57.895 0.00 0.00 0.00 5.10
3170 14448 0.320946 CCTTTAGTCCCGGTTCGCAA 60.321 55.000 0.00 0.00 0.00 4.85
3171 14449 0.794473 CTTTAGTCCCGGTTCGCAAC 59.206 55.000 0.00 0.00 0.00 4.17
3172 14450 0.106335 TTTAGTCCCGGTTCGCAACA 59.894 50.000 0.00 0.00 0.00 3.33
3173 14451 0.320073 TTAGTCCCGGTTCGCAACAG 60.320 55.000 0.00 0.00 0.00 3.16
3174 14452 2.775032 TAGTCCCGGTTCGCAACAGC 62.775 60.000 0.00 0.00 0.00 4.40
3177 14455 2.978010 CCGGTTCGCAACAGCCTT 60.978 61.111 0.00 0.00 0.00 4.35
3178 14456 2.551912 CCGGTTCGCAACAGCCTTT 61.552 57.895 0.00 0.00 0.00 3.11
3179 14457 1.231958 CCGGTTCGCAACAGCCTTTA 61.232 55.000 0.00 0.00 0.00 1.85
3180 14458 0.165944 CGGTTCGCAACAGCCTTTAG 59.834 55.000 2.28 0.00 0.00 1.85
3181 14459 1.235724 GGTTCGCAACAGCCTTTAGT 58.764 50.000 2.28 0.00 0.00 2.24
3182 14460 1.197036 GGTTCGCAACAGCCTTTAGTC 59.803 52.381 2.28 0.00 0.00 2.59
3183 14461 1.197036 GTTCGCAACAGCCTTTAGTCC 59.803 52.381 0.00 0.00 0.00 3.85
3184 14462 0.321298 TCGCAACAGCCTTTAGTCCC 60.321 55.000 0.00 0.00 0.00 4.46
3185 14463 1.635663 CGCAACAGCCTTTAGTCCCG 61.636 60.000 0.00 0.00 0.00 5.14
3186 14464 1.305930 GCAACAGCCTTTAGTCCCGG 61.306 60.000 0.00 0.00 0.00 5.73
3187 14465 1.002502 AACAGCCTTTAGTCCCGGC 60.003 57.895 0.00 0.00 44.09 6.13
3190 14468 2.669240 GCCTTTAGTCCCGGCTGT 59.331 61.111 0.00 0.00 40.62 4.40
3191 14469 1.745489 GCCTTTAGTCCCGGCTGTG 60.745 63.158 0.00 0.00 40.62 3.66
3192 14470 1.745489 CCTTTAGTCCCGGCTGTGC 60.745 63.158 0.00 0.00 0.00 4.57
3193 14471 1.003839 CTTTAGTCCCGGCTGTGCA 60.004 57.895 0.00 0.00 0.00 4.57
3194 14472 0.605319 CTTTAGTCCCGGCTGTGCAA 60.605 55.000 0.00 0.00 0.00 4.08
3195 14473 0.887387 TTTAGTCCCGGCTGTGCAAC 60.887 55.000 0.00 0.00 37.35 4.17
3196 14474 2.741486 TTAGTCCCGGCTGTGCAACC 62.741 60.000 0.00 0.00 34.36 3.77
3202 14480 4.643387 GGCTGTGCAACCGGGACT 62.643 66.667 6.32 0.00 38.87 3.85
3203 14481 2.345991 GCTGTGCAACCGGGACTA 59.654 61.111 6.32 0.00 38.87 2.59
3204 14482 1.302192 GCTGTGCAACCGGGACTAA 60.302 57.895 6.32 0.00 38.87 2.24
3205 14483 0.887387 GCTGTGCAACCGGGACTAAA 60.887 55.000 6.32 0.00 38.87 1.85
3206 14484 1.821216 CTGTGCAACCGGGACTAAAT 58.179 50.000 6.32 0.00 38.87 1.40
3207 14485 2.937873 GCTGTGCAACCGGGACTAAATA 60.938 50.000 6.32 0.00 38.87 1.40
3208 14486 3.541632 CTGTGCAACCGGGACTAAATAT 58.458 45.455 6.32 0.00 38.87 1.28
3209 14487 3.275143 TGTGCAACCGGGACTAAATATG 58.725 45.455 6.32 0.00 38.87 1.78
3210 14488 2.032924 GTGCAACCGGGACTAAATATGC 59.967 50.000 6.32 2.60 34.56 3.14
3211 14489 1.263217 GCAACCGGGACTAAATATGCG 59.737 52.381 6.32 0.00 0.00 4.73
3212 14490 1.263217 CAACCGGGACTAAATATGCGC 59.737 52.381 6.32 0.00 0.00 6.09
3213 14491 0.599204 ACCGGGACTAAATATGCGCG 60.599 55.000 6.32 0.00 36.61 6.86
3214 14492 0.319211 CCGGGACTAAATATGCGCGA 60.319 55.000 12.10 0.00 38.72 5.87
3215 14493 0.782384 CGGGACTAAATATGCGCGAC 59.218 55.000 12.10 0.88 38.72 5.19
3216 14494 1.602165 CGGGACTAAATATGCGCGACT 60.602 52.381 12.10 0.00 38.72 4.18
3217 14495 2.351060 CGGGACTAAATATGCGCGACTA 60.351 50.000 12.10 0.00 38.72 2.59
3218 14496 3.645884 GGGACTAAATATGCGCGACTAA 58.354 45.455 12.10 0.00 0.00 2.24
3219 14497 4.053295 GGGACTAAATATGCGCGACTAAA 58.947 43.478 12.10 0.00 0.00 1.85
3220 14498 4.150098 GGGACTAAATATGCGCGACTAAAG 59.850 45.833 12.10 0.00 0.00 1.85
3221 14499 4.980434 GGACTAAATATGCGCGACTAAAGA 59.020 41.667 12.10 0.00 0.00 2.52
3222 14500 5.107951 GGACTAAATATGCGCGACTAAAGAC 60.108 44.000 12.10 0.00 0.00 3.01
3223 14501 4.743644 ACTAAATATGCGCGACTAAAGACC 59.256 41.667 12.10 0.00 0.00 3.85
3224 14502 2.150397 ATATGCGCGACTAAAGACCC 57.850 50.000 12.10 0.00 0.00 4.46
3225 14503 0.103572 TATGCGCGACTAAAGACCCC 59.896 55.000 12.10 0.00 0.00 4.95
3226 14504 2.510918 GCGCGACTAAAGACCCCC 60.511 66.667 12.10 0.00 0.00 5.40
3242 14520 3.782443 CCCCCTTTAGTCGCGCCT 61.782 66.667 0.00 0.00 0.00 5.52
3243 14521 2.202892 CCCCTTTAGTCGCGCCTC 60.203 66.667 0.00 0.00 0.00 4.70
3244 14522 2.722201 CCCCTTTAGTCGCGCCTCT 61.722 63.158 0.00 2.63 0.00 3.69
3245 14523 1.218316 CCCTTTAGTCGCGCCTCTT 59.782 57.895 0.00 0.00 0.00 2.85
3246 14524 0.458669 CCCTTTAGTCGCGCCTCTTA 59.541 55.000 0.00 0.00 0.00 2.10
3247 14525 1.557651 CCTTTAGTCGCGCCTCTTAC 58.442 55.000 0.00 0.00 0.00 2.34
3248 14526 1.189403 CTTTAGTCGCGCCTCTTACG 58.811 55.000 0.00 0.00 0.00 3.18
3249 14527 0.179156 TTTAGTCGCGCCTCTTACGG 60.179 55.000 0.00 0.00 0.00 4.02
3250 14528 1.026182 TTAGTCGCGCCTCTTACGGA 61.026 55.000 0.00 0.00 0.00 4.69
3251 14529 1.709147 TAGTCGCGCCTCTTACGGAC 61.709 60.000 0.00 0.00 33.64 4.79
3252 14530 3.818787 TCGCGCCTCTTACGGACC 61.819 66.667 0.00 0.00 0.00 4.46
3256 14534 3.818787 GCCTCTTACGGACCGCGA 61.819 66.667 15.39 7.37 0.00 5.87
3257 14535 2.101770 CCTCTTACGGACCGCGAC 59.898 66.667 15.39 0.17 0.00 5.19
3258 14536 2.404995 CCTCTTACGGACCGCGACT 61.405 63.158 15.39 0.00 0.00 4.18
3259 14537 1.091771 CCTCTTACGGACCGCGACTA 61.092 60.000 15.39 0.00 0.00 2.59
3260 14538 0.729116 CTCTTACGGACCGCGACTAA 59.271 55.000 15.39 4.10 0.00 2.24
3261 14539 1.131126 CTCTTACGGACCGCGACTAAA 59.869 52.381 15.39 0.00 0.00 1.85
3262 14540 1.131126 TCTTACGGACCGCGACTAAAG 59.869 52.381 15.39 8.36 0.00 1.85
3263 14541 0.171007 TTACGGACCGCGACTAAAGG 59.829 55.000 15.39 0.00 0.00 3.11
3264 14542 2.270297 TACGGACCGCGACTAAAGGC 62.270 60.000 15.39 0.00 0.00 4.35
3265 14543 2.577593 GGACCGCGACTAAAGGCT 59.422 61.111 8.23 0.00 0.00 4.58
3266 14544 1.079336 GGACCGCGACTAAAGGCTT 60.079 57.895 8.23 0.00 0.00 4.35
3267 14545 0.672711 GGACCGCGACTAAAGGCTTT 60.673 55.000 17.76 17.76 0.00 3.51
3268 14546 1.404583 GGACCGCGACTAAAGGCTTTA 60.405 52.381 18.11 18.11 0.00 1.85
3269 14547 1.925185 GACCGCGACTAAAGGCTTTAG 59.075 52.381 34.37 34.37 46.26 1.85
3277 14555 3.345508 CTAAAGGCTTTAGTCCCGGTT 57.654 47.619 30.21 2.75 38.21 4.44
3278 14556 2.195741 AAAGGCTTTAGTCCCGGTTC 57.804 50.000 11.52 0.00 0.00 3.62
3279 14557 1.359168 AAGGCTTTAGTCCCGGTTCT 58.641 50.000 0.00 0.15 0.00 3.01
3280 14558 1.359168 AGGCTTTAGTCCCGGTTCTT 58.641 50.000 0.00 0.00 0.00 2.52
3281 14559 1.003233 AGGCTTTAGTCCCGGTTCTTG 59.997 52.381 0.00 0.00 0.00 3.02
3282 14560 1.271217 GGCTTTAGTCCCGGTTCTTGT 60.271 52.381 0.00 0.00 0.00 3.16
3283 14561 1.804748 GCTTTAGTCCCGGTTCTTGTG 59.195 52.381 0.00 0.00 0.00 3.33
3284 14562 2.423577 CTTTAGTCCCGGTTCTTGTGG 58.576 52.381 0.00 0.00 0.00 4.17
3285 14563 0.035739 TTAGTCCCGGTTCTTGTGGC 59.964 55.000 0.00 0.00 0.00 5.01
3286 14564 0.834687 TAGTCCCGGTTCTTGTGGCT 60.835 55.000 0.00 0.00 0.00 4.75
3287 14565 1.966451 GTCCCGGTTCTTGTGGCTG 60.966 63.158 0.00 0.00 0.00 4.85
3288 14566 2.144078 TCCCGGTTCTTGTGGCTGA 61.144 57.895 0.00 0.00 0.00 4.26
3289 14567 1.966451 CCCGGTTCTTGTGGCTGAC 60.966 63.158 0.00 0.00 0.00 3.51
3290 14568 1.966451 CCGGTTCTTGTGGCTGACC 60.966 63.158 0.00 0.00 0.00 4.02
3291 14569 2.317609 CGGTTCTTGTGGCTGACCG 61.318 63.158 0.00 0.00 39.70 4.79
3292 14570 1.966451 GGTTCTTGTGGCTGACCGG 60.966 63.158 0.00 0.00 39.70 5.28
3293 14571 1.966451 GTTCTTGTGGCTGACCGGG 60.966 63.158 6.32 0.00 39.70 5.73
3294 14572 2.144078 TTCTTGTGGCTGACCGGGA 61.144 57.895 6.32 0.00 39.70 5.14
3295 14573 2.358737 CTTGTGGCTGACCGGGAC 60.359 66.667 6.32 0.00 39.70 4.46
3296 14574 2.847234 TTGTGGCTGACCGGGACT 60.847 61.111 6.32 0.00 39.70 3.85
3297 14575 1.534476 TTGTGGCTGACCGGGACTA 60.534 57.895 6.32 0.00 39.70 2.59
3298 14576 1.122632 TTGTGGCTGACCGGGACTAA 61.123 55.000 6.32 0.00 39.70 2.24
3299 14577 1.122632 TGTGGCTGACCGGGACTAAA 61.123 55.000 6.32 0.00 39.70 1.85
3300 14578 0.391263 GTGGCTGACCGGGACTAAAG 60.391 60.000 6.32 0.00 39.70 1.85
3301 14579 1.221021 GGCTGACCGGGACTAAAGG 59.779 63.158 6.32 0.00 0.00 3.11
3302 14580 1.449778 GCTGACCGGGACTAAAGGC 60.450 63.158 6.32 0.00 0.00 4.35
3303 14581 1.221021 CTGACCGGGACTAAAGGCC 59.779 63.158 6.32 0.00 0.00 5.19
3304 14582 2.253403 CTGACCGGGACTAAAGGCCC 62.253 65.000 11.29 11.29 41.11 5.80
3308 14586 2.588439 GGGACTAAAGGCCCGTCC 59.412 66.667 18.06 18.06 45.02 4.79
3309 14587 3.395630 GGACTAAAGGCCCGTCCA 58.604 61.111 20.23 0.00 45.08 4.02
3310 14588 1.078637 GGACTAAAGGCCCGTCCAC 60.079 63.158 20.23 2.00 45.08 4.02
3311 14589 1.447314 GACTAAAGGCCCGTCCACG 60.447 63.158 0.00 0.00 37.29 4.94
3312 14590 2.163601 GACTAAAGGCCCGTCCACGT 62.164 60.000 0.00 0.00 37.29 4.49
3313 14591 1.740296 CTAAAGGCCCGTCCACGTG 60.740 63.158 9.08 9.08 37.29 4.49
3314 14592 3.242897 TAAAGGCCCGTCCACGTGG 62.243 63.158 29.26 29.26 37.29 4.94
3347 14625 3.078836 CGGGGCGGAGGACCTTTA 61.079 66.667 0.00 0.00 43.03 1.85
3348 14626 2.908796 GGGGCGGAGGACCTTTAG 59.091 66.667 0.00 0.00 43.03 1.85
3349 14627 1.993948 GGGGCGGAGGACCTTTAGT 60.994 63.158 0.00 0.00 43.03 2.24
3350 14628 1.521141 GGGCGGAGGACCTTTAGTC 59.479 63.158 0.00 0.00 45.51 2.59
3359 14637 2.669300 GACCTTTAGTCCCGGTTCTC 57.331 55.000 0.00 0.00 39.84 2.87
3360 14638 0.893447 ACCTTTAGTCCCGGTTCTCG 59.107 55.000 0.00 0.00 38.88 4.04
3361 14639 0.893447 CCTTTAGTCCCGGTTCTCGT 59.107 55.000 0.00 0.00 37.11 4.18
3362 14640 1.403780 CCTTTAGTCCCGGTTCTCGTG 60.404 57.143 0.00 0.00 37.11 4.35
3363 14641 0.604578 TTTAGTCCCGGTTCTCGTGG 59.395 55.000 0.00 0.00 37.11 4.94
3364 14642 1.880819 TTAGTCCCGGTTCTCGTGGC 61.881 60.000 0.00 0.00 37.11 5.01
3365 14643 4.754667 GTCCCGGTTCTCGTGGCC 62.755 72.222 0.00 0.00 37.11 5.36
3367 14645 4.323477 CCCGGTTCTCGTGGCCAA 62.323 66.667 7.24 0.00 37.11 4.52
3368 14646 3.047877 CCGGTTCTCGTGGCCAAC 61.048 66.667 7.24 0.03 37.11 3.77
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 48 2.358737 GTGTTGCCCCGGTCTGAG 60.359 66.667 0.00 0.00 0.00 3.35
149 150 0.112412 GGTGGATCTGGGTTTGTGGT 59.888 55.000 0.00 0.00 0.00 4.16
182 183 3.678289 CAGATTGTGGTCCTCATTGACA 58.322 45.455 0.00 0.00 36.97 3.58
190 191 0.107508 CGGATGCAGATTGTGGTCCT 60.108 55.000 0.00 0.00 0.00 3.85
191 192 0.392998 ACGGATGCAGATTGTGGTCC 60.393 55.000 0.00 0.00 0.00 4.46
210 211 3.961408 GAGCTTGGGATGTAGTCTAGGAA 59.039 47.826 0.00 0.00 0.00 3.36
215 216 1.834263 GTGGAGCTTGGGATGTAGTCT 59.166 52.381 0.00 0.00 0.00 3.24
238 239 4.403137 GCGTTTGCTCATGCGCCA 62.403 61.111 4.18 0.00 43.52 5.69
244 246 3.788766 GCGACGGCGTTTGCTCAT 61.789 61.111 24.70 0.00 42.25 2.90
267 269 2.583441 CCTGTGTCCTCGGGCTTCA 61.583 63.158 0.00 0.00 0.00 3.02
309 311 3.165071 GTTCAAACAAGGATGGTGGGAT 58.835 45.455 0.00 0.00 0.00 3.85
310 312 2.091610 TGTTCAAACAAGGATGGTGGGA 60.092 45.455 0.00 0.00 35.67 4.37
312 314 2.958355 ACTGTTCAAACAAGGATGGTGG 59.042 45.455 0.00 0.00 38.66 4.61
324 332 3.702792 TGGGAAAACCAGACTGTTCAAA 58.297 40.909 0.93 0.00 46.80 2.69
341 349 1.750193 GATCCGCTTTTGTGATGGGA 58.250 50.000 0.00 0.00 0.00 4.37
343 351 3.903876 CGATCCGCTTTTGTGATGG 57.096 52.632 0.00 0.00 0.00 3.51
355 363 2.813226 TTCCCCAACAAGGCGATCCG 62.813 60.000 0.00 0.00 37.47 4.18
356 364 1.001393 TTCCCCAACAAGGCGATCC 60.001 57.895 0.00 0.00 35.39 3.36
357 365 1.032114 CCTTCCCCAACAAGGCGATC 61.032 60.000 0.00 0.00 34.21 3.69
358 366 1.000896 CCTTCCCCAACAAGGCGAT 60.001 57.895 0.00 0.00 34.21 4.58
359 367 1.497309 ATCCTTCCCCAACAAGGCGA 61.497 55.000 0.00 0.00 40.43 5.54
360 368 0.611896 AATCCTTCCCCAACAAGGCG 60.612 55.000 0.00 0.00 40.43 5.52
361 369 1.276138 CAAATCCTTCCCCAACAAGGC 59.724 52.381 0.00 0.00 40.43 4.35
362 370 2.888212 TCAAATCCTTCCCCAACAAGG 58.112 47.619 0.00 0.00 41.81 3.61
363 371 4.151883 TCTTCAAATCCTTCCCCAACAAG 58.848 43.478 0.00 0.00 0.00 3.16
364 372 4.191804 TCTTCAAATCCTTCCCCAACAA 57.808 40.909 0.00 0.00 0.00 2.83
365 373 3.893753 TCTTCAAATCCTTCCCCAACA 57.106 42.857 0.00 0.00 0.00 3.33
366 374 5.745312 AAATCTTCAAATCCTTCCCCAAC 57.255 39.130 0.00 0.00 0.00 3.77
367 375 8.320617 CAAATAAATCTTCAAATCCTTCCCCAA 58.679 33.333 0.00 0.00 0.00 4.12
368 376 7.457535 ACAAATAAATCTTCAAATCCTTCCCCA 59.542 33.333 0.00 0.00 0.00 4.96
369 377 7.851228 ACAAATAAATCTTCAAATCCTTCCCC 58.149 34.615 0.00 0.00 0.00 4.81
370 378 7.702348 CGACAAATAAATCTTCAAATCCTTCCC 59.298 37.037 0.00 0.00 0.00 3.97
371 379 7.702348 CCGACAAATAAATCTTCAAATCCTTCC 59.298 37.037 0.00 0.00 0.00 3.46
372 380 7.220875 GCCGACAAATAAATCTTCAAATCCTTC 59.779 37.037 0.00 0.00 0.00 3.46
373 381 7.035612 GCCGACAAATAAATCTTCAAATCCTT 58.964 34.615 0.00 0.00 0.00 3.36
374 382 6.564328 GCCGACAAATAAATCTTCAAATCCT 58.436 36.000 0.00 0.00 0.00 3.24
375 383 5.455525 CGCCGACAAATAAATCTTCAAATCC 59.544 40.000 0.00 0.00 0.00 3.01
376 384 5.052370 GCGCCGACAAATAAATCTTCAAATC 60.052 40.000 0.00 0.00 0.00 2.17
377 385 4.798387 GCGCCGACAAATAAATCTTCAAAT 59.202 37.500 0.00 0.00 0.00 2.32
378 386 4.162812 GCGCCGACAAATAAATCTTCAAA 58.837 39.130 0.00 0.00 0.00 2.69
379 387 3.426963 GGCGCCGACAAATAAATCTTCAA 60.427 43.478 12.58 0.00 0.00 2.69
380 388 2.096819 GGCGCCGACAAATAAATCTTCA 59.903 45.455 12.58 0.00 0.00 3.02
381 389 2.716398 GGCGCCGACAAATAAATCTTC 58.284 47.619 12.58 0.00 0.00 2.87
382 390 1.063469 CGGCGCCGACAAATAAATCTT 59.937 47.619 44.86 0.00 42.83 2.40
383 391 0.655733 CGGCGCCGACAAATAAATCT 59.344 50.000 44.86 0.00 42.83 2.40
384 392 3.142796 CGGCGCCGACAAATAAATC 57.857 52.632 44.86 1.37 42.83 2.17
409 417 3.814268 CATTGGCTTCGGCGGTGG 61.814 66.667 7.21 0.00 42.91 4.61
410 418 2.745884 TCATTGGCTTCGGCGGTG 60.746 61.111 7.21 0.75 42.91 4.94
411 419 2.746277 GTCATTGGCTTCGGCGGT 60.746 61.111 7.21 0.00 42.91 5.68
412 420 3.864686 CGTCATTGGCTTCGGCGG 61.865 66.667 7.21 0.00 42.91 6.13
413 421 0.874175 TATCGTCATTGGCTTCGGCG 60.874 55.000 0.00 0.00 42.91 6.46
414 422 1.295792 TTATCGTCATTGGCTTCGGC 58.704 50.000 0.00 0.00 40.88 5.54
415 423 2.675844 TGTTTATCGTCATTGGCTTCGG 59.324 45.455 0.00 0.00 0.00 4.30
416 424 4.088648 GTTGTTTATCGTCATTGGCTTCG 58.911 43.478 0.00 0.00 0.00 3.79
417 425 4.412207 GGTTGTTTATCGTCATTGGCTTC 58.588 43.478 0.00 0.00 0.00 3.86
418 426 3.192633 GGGTTGTTTATCGTCATTGGCTT 59.807 43.478 0.00 0.00 0.00 4.35
419 427 2.752903 GGGTTGTTTATCGTCATTGGCT 59.247 45.455 0.00 0.00 0.00 4.75
420 428 2.752903 AGGGTTGTTTATCGTCATTGGC 59.247 45.455 0.00 0.00 0.00 4.52
421 429 4.261801 AGAGGGTTGTTTATCGTCATTGG 58.738 43.478 0.00 0.00 0.00 3.16
422 430 6.978343 TTAGAGGGTTGTTTATCGTCATTG 57.022 37.500 0.00 0.00 0.00 2.82
423 431 7.110155 ACATTAGAGGGTTGTTTATCGTCATT 58.890 34.615 0.00 0.00 0.00 2.57
424 432 6.650120 ACATTAGAGGGTTGTTTATCGTCAT 58.350 36.000 0.00 0.00 0.00 3.06
425 433 6.045072 ACATTAGAGGGTTGTTTATCGTCA 57.955 37.500 0.00 0.00 0.00 4.35
426 434 6.338937 AGACATTAGAGGGTTGTTTATCGTC 58.661 40.000 0.00 0.00 0.00 4.20
427 435 6.295719 AGACATTAGAGGGTTGTTTATCGT 57.704 37.500 0.00 0.00 0.00 3.73
428 436 8.712285 TTTAGACATTAGAGGGTTGTTTATCG 57.288 34.615 0.00 0.00 0.00 2.92
430 438 9.802039 TGTTTTAGACATTAGAGGGTTGTTTAT 57.198 29.630 0.00 0.00 32.00 1.40
431 439 9.629878 TTGTTTTAGACATTAGAGGGTTGTTTA 57.370 29.630 0.00 0.00 38.26 2.01
432 440 8.528044 TTGTTTTAGACATTAGAGGGTTGTTT 57.472 30.769 0.00 0.00 38.26 2.83
433 441 8.706322 ATTGTTTTAGACATTAGAGGGTTGTT 57.294 30.769 0.00 0.00 38.26 2.83
434 442 8.706322 AATTGTTTTAGACATTAGAGGGTTGT 57.294 30.769 0.00 0.00 38.26 3.32
435 443 8.792633 TGAATTGTTTTAGACATTAGAGGGTTG 58.207 33.333 0.00 0.00 38.26 3.77
436 444 8.793592 GTGAATTGTTTTAGACATTAGAGGGTT 58.206 33.333 0.00 0.00 38.26 4.11
437 445 7.942341 TGTGAATTGTTTTAGACATTAGAGGGT 59.058 33.333 0.00 0.00 38.26 4.34
438 446 8.237267 GTGTGAATTGTTTTAGACATTAGAGGG 58.763 37.037 0.00 0.00 38.26 4.30
439 447 8.783093 TGTGTGAATTGTTTTAGACATTAGAGG 58.217 33.333 0.00 0.00 38.26 3.69
440 448 9.599322 GTGTGTGAATTGTTTTAGACATTAGAG 57.401 33.333 0.00 0.00 38.26 2.43
441 449 8.279800 CGTGTGTGAATTGTTTTAGACATTAGA 58.720 33.333 0.00 0.00 38.26 2.10
442 450 8.067784 ACGTGTGTGAATTGTTTTAGACATTAG 58.932 33.333 0.00 0.00 38.26 1.73
443 451 7.921787 ACGTGTGTGAATTGTTTTAGACATTA 58.078 30.769 0.00 0.00 38.26 1.90
444 452 6.791303 ACGTGTGTGAATTGTTTTAGACATT 58.209 32.000 0.00 0.00 38.26 2.71
445 453 6.371809 ACGTGTGTGAATTGTTTTAGACAT 57.628 33.333 0.00 0.00 38.26 3.06
446 454 5.804692 ACGTGTGTGAATTGTTTTAGACA 57.195 34.783 0.00 0.00 36.19 3.41
460 468 3.118454 GCCGGATCCACGTGTGTG 61.118 66.667 15.65 0.00 46.00 3.82
461 469 4.735132 CGCCGGATCCACGTGTGT 62.735 66.667 15.65 1.73 0.00 3.72
462 470 4.429212 TCGCCGGATCCACGTGTG 62.429 66.667 20.18 6.24 0.00 3.82
463 471 4.430765 GTCGCCGGATCCACGTGT 62.431 66.667 20.18 0.00 0.00 4.49
496 504 2.260481 GAAAGAATGACGACCTCGGTC 58.740 52.381 6.01 6.01 44.95 4.79
497 505 1.616865 TGAAAGAATGACGACCTCGGT 59.383 47.619 0.00 0.00 44.95 4.69
498 506 2.363788 TGAAAGAATGACGACCTCGG 57.636 50.000 0.00 0.00 44.95 4.63
499 507 6.403333 TTTAATGAAAGAATGACGACCTCG 57.597 37.500 0.00 0.00 46.33 4.63
502 510 9.834628 TGTTTATTTAATGAAAGAATGACGACC 57.165 29.630 0.00 0.00 0.00 4.79
563 571 1.077787 TTGGCACGGGCTAATCAGG 60.078 57.895 10.74 0.00 35.39 3.86
577 585 3.860930 TTTGGGAGGGCGAGTTGGC 62.861 63.158 0.00 0.00 43.88 4.52
578 586 1.675641 CTTTGGGAGGGCGAGTTGG 60.676 63.158 0.00 0.00 0.00 3.77
579 587 0.674895 CTCTTTGGGAGGGCGAGTTG 60.675 60.000 0.00 0.00 38.35 3.16
580 588 1.128188 ACTCTTTGGGAGGGCGAGTT 61.128 55.000 0.00 0.00 45.83 3.01
581 589 1.128188 AACTCTTTGGGAGGGCGAGT 61.128 55.000 0.00 0.00 45.83 4.18
583 591 1.354101 TTAACTCTTTGGGAGGGCGA 58.646 50.000 0.00 0.00 45.83 5.54
584 592 2.194201 TTTAACTCTTTGGGAGGGCG 57.806 50.000 0.00 0.00 45.83 6.13
608 776 3.133665 AGAATGGAATGGAATCTCCCCA 58.866 45.455 0.00 0.00 35.03 4.96
673 2677 4.624364 TGTGGTCACGGCTGGCTG 62.624 66.667 0.00 0.00 0.00 4.85
674 2678 4.626081 GTGTGGTCACGGCTGGCT 62.626 66.667 0.00 0.00 34.79 4.75
676 2680 4.248842 TGGTGTGGTCACGGCTGG 62.249 66.667 0.00 0.00 44.68 4.85
677 2681 2.666190 CTGGTGTGGTCACGGCTG 60.666 66.667 0.00 0.00 44.68 4.85
678 2682 2.842462 TCTGGTGTGGTCACGGCT 60.842 61.111 0.00 0.00 44.68 5.52
898 2959 1.889829 CGCTTATACTCCCAGCTAGCT 59.110 52.381 12.68 12.68 0.00 3.32
900 2961 2.885266 TCACGCTTATACTCCCAGCTAG 59.115 50.000 0.00 0.00 0.00 3.42
901 2962 2.885266 CTCACGCTTATACTCCCAGCTA 59.115 50.000 0.00 0.00 0.00 3.32
946 4155 4.584638 TGCCTGCTTCCCTTAATTTCTA 57.415 40.909 0.00 0.00 0.00 2.10
964 4173 4.026356 ACTCCCAGCAATAGAATATGCC 57.974 45.455 0.00 0.00 43.57 4.40
975 4185 1.351017 CCCAAGTTCTACTCCCAGCAA 59.649 52.381 0.00 0.00 0.00 3.91
976 4186 0.984230 CCCAAGTTCTACTCCCAGCA 59.016 55.000 0.00 0.00 0.00 4.41
1237 11105 2.158957 TGAGGCAGTCGAAGTTGAACTT 60.159 45.455 10.82 10.82 41.95 2.66
1299 11170 1.988406 GACGACCCCAGGCTTAGGT 60.988 63.158 4.90 4.90 36.31 3.08
1303 11174 3.637273 GTGGACGACCCCAGGCTT 61.637 66.667 0.34 0.00 36.78 4.35
1347 11236 2.829914 TTCTGCGCCATGGCATCC 60.830 61.111 34.93 22.30 42.99 3.51
1360 11249 3.414700 GCCACTCGTGCCGTTCTG 61.415 66.667 0.00 0.00 0.00 3.02
1395 11284 3.986006 GACGACGACCTGCCACCA 61.986 66.667 0.00 0.00 0.00 4.17
1886 11872 0.106015 TCCTCATCGGCATCTCCTCA 60.106 55.000 0.00 0.00 0.00 3.86
1977 12550 9.787532 CGATGACAAACTGTATGGATAAAAATT 57.212 29.630 0.00 0.00 0.00 1.82
2020 12593 1.405463 CAGATGTCGATCCTCGTTCCA 59.595 52.381 0.00 0.00 41.35 3.53
2021 12594 1.866063 GCAGATGTCGATCCTCGTTCC 60.866 57.143 0.00 0.00 41.35 3.62
2110 13055 2.355126 CAGCTGACGACGCACTGT 60.355 61.111 8.42 0.00 0.00 3.55
2185 13130 3.490078 GGAAAATTTTGCCGCCGATATCA 60.490 43.478 8.47 0.00 0.00 2.15
2186 13131 3.049912 GGAAAATTTTGCCGCCGATATC 58.950 45.455 8.47 0.00 0.00 1.63
2187 13132 2.428890 TGGAAAATTTTGCCGCCGATAT 59.571 40.909 18.37 0.00 0.00 1.63
2189 13134 0.605589 TGGAAAATTTTGCCGCCGAT 59.394 45.000 18.37 0.00 0.00 4.18
2191 13136 1.128321 CAATGGAAAATTTTGCCGCCG 59.872 47.619 18.37 2.61 0.00 6.46
2192 13137 2.421619 TCAATGGAAAATTTTGCCGCC 58.578 42.857 18.37 9.29 0.00 6.13
2195 13140 7.085746 CCAAGAAATCAATGGAAAATTTTGCC 58.914 34.615 18.37 14.06 36.27 4.52
2236 13201 7.020602 CCACGCATCGAATTATAATATTGCAA 58.979 34.615 0.00 0.00 0.00 4.08
2241 13206 6.649141 ACACACCACGCATCGAATTATAATAT 59.351 34.615 0.00 0.00 0.00 1.28
2258 13252 6.041182 TCCTATATATACACCACACACACCAC 59.959 42.308 0.00 0.00 0.00 4.16
2271 13270 6.354917 GCTCCTCCCTTCCTCCTATATATACA 60.355 46.154 0.00 0.00 0.00 2.29
2299 13298 1.026584 TCTCGTCGGTTCTTGTCACA 58.973 50.000 0.00 0.00 0.00 3.58
2308 13307 0.108615 CCTGCTTGATCTCGTCGGTT 60.109 55.000 0.00 0.00 0.00 4.44
2391 13438 3.380320 TCAACAGAGAACTCACAGACGAA 59.620 43.478 4.64 0.00 0.00 3.85
2510 13752 8.745590 ACAATGATACATACATGCATGCATTAT 58.254 29.630 30.32 23.05 33.90 1.28
2600 13865 2.098443 ACAAAAACCTGTAACAGTGCCG 59.902 45.455 0.00 0.00 0.00 5.69
2725 13996 2.233271 ACTTGTCAGGGCTTGTTCATG 58.767 47.619 0.00 3.34 0.00 3.07
2742 14013 6.111382 TGTGTATACAGTACGAGAGCTACTT 58.889 40.000 5.62 0.00 31.91 2.24
2761 14032 2.289195 GGAATCAACGGACCACTGTGTA 60.289 50.000 7.08 0.00 35.61 2.90
2922 14195 1.998315 CAGTCGAGAGTTTGCATCCTG 59.002 52.381 0.00 0.00 0.00 3.86
2965 14242 9.709495 TCAATTTTTCAAATCACTATTTCCCTG 57.291 29.630 0.00 0.00 32.87 4.45
3002 14280 9.467258 AATGTTATTGGCTTATCATGAAATTCG 57.533 29.630 0.00 0.00 0.00 3.34
3017 14295 6.660949 AGGGAGCATCTATAAATGTTATTGGC 59.339 38.462 0.00 0.00 33.73 4.52
3045 14323 9.668497 GGAAAGTATCAATACCAAGAAGTTACT 57.332 33.333 0.00 0.00 33.79 2.24
3073 14351 2.697654 AGAATGAACTCAGAGCTGCAC 58.302 47.619 1.02 0.00 0.00 4.57
3123 14401 3.116096 TCTACCAGTGTAGGCTTCCAT 57.884 47.619 0.00 0.00 43.90 3.41
3144 14422 1.146359 ACCGGGACTAAAGGGCTTTTT 59.854 47.619 6.32 0.00 34.23 1.94
3145 14423 0.775542 ACCGGGACTAAAGGGCTTTT 59.224 50.000 6.32 0.00 34.23 2.27
3146 14424 0.775542 AACCGGGACTAAAGGGCTTT 59.224 50.000 6.32 0.00 36.63 3.51
3147 14425 0.327259 GAACCGGGACTAAAGGGCTT 59.673 55.000 6.32 0.00 0.00 4.35
3148 14426 1.896122 CGAACCGGGACTAAAGGGCT 61.896 60.000 6.32 0.00 0.00 5.19
3149 14427 1.449070 CGAACCGGGACTAAAGGGC 60.449 63.158 6.32 0.00 0.00 5.19
3150 14428 1.449070 GCGAACCGGGACTAAAGGG 60.449 63.158 6.32 0.00 0.00 3.95
3151 14429 0.320946 TTGCGAACCGGGACTAAAGG 60.321 55.000 6.32 0.00 0.00 3.11
3152 14430 0.794473 GTTGCGAACCGGGACTAAAG 59.206 55.000 6.32 0.00 0.00 1.85
3153 14431 0.106335 TGTTGCGAACCGGGACTAAA 59.894 50.000 6.32 0.00 0.00 1.85
3154 14432 0.320073 CTGTTGCGAACCGGGACTAA 60.320 55.000 6.32 0.00 0.00 2.24
3155 14433 1.290955 CTGTTGCGAACCGGGACTA 59.709 57.895 6.32 0.00 0.00 2.59
3156 14434 2.030562 CTGTTGCGAACCGGGACT 59.969 61.111 6.32 0.00 0.00 3.85
3157 14435 3.723348 GCTGTTGCGAACCGGGAC 61.723 66.667 6.32 0.00 0.00 4.46
3160 14438 1.231958 TAAAGGCTGTTGCGAACCGG 61.232 55.000 0.00 0.00 40.82 5.28
3161 14439 0.165944 CTAAAGGCTGTTGCGAACCG 59.834 55.000 0.00 0.00 40.82 4.44
3162 14440 1.197036 GACTAAAGGCTGTTGCGAACC 59.803 52.381 0.00 0.00 40.82 3.62
3163 14441 1.197036 GGACTAAAGGCTGTTGCGAAC 59.803 52.381 0.00 0.00 40.82 3.95
3164 14442 1.519408 GGACTAAAGGCTGTTGCGAA 58.481 50.000 0.00 0.00 40.82 4.70
3165 14443 0.321298 GGGACTAAAGGCTGTTGCGA 60.321 55.000 0.00 0.00 40.82 5.10
3166 14444 1.635663 CGGGACTAAAGGCTGTTGCG 61.636 60.000 0.00 0.00 40.82 4.85
3167 14445 1.305930 CCGGGACTAAAGGCTGTTGC 61.306 60.000 0.00 0.00 38.76 4.17
3168 14446 1.305930 GCCGGGACTAAAGGCTGTTG 61.306 60.000 2.18 0.00 46.83 3.33
3169 14447 1.002502 GCCGGGACTAAAGGCTGTT 60.003 57.895 2.18 0.00 46.83 3.16
3170 14448 2.669240 GCCGGGACTAAAGGCTGT 59.331 61.111 2.18 0.00 46.83 4.40
3174 14452 1.745489 GCACAGCCGGGACTAAAGG 60.745 63.158 2.18 0.00 0.00 3.11
3175 14453 0.605319 TTGCACAGCCGGGACTAAAG 60.605 55.000 2.18 0.00 0.00 1.85
3176 14454 0.887387 GTTGCACAGCCGGGACTAAA 60.887 55.000 2.18 0.00 0.00 1.85
3177 14455 1.302192 GTTGCACAGCCGGGACTAA 60.302 57.895 2.18 0.00 0.00 2.24
3178 14456 2.345991 GTTGCACAGCCGGGACTA 59.654 61.111 2.18 0.00 0.00 2.59
3179 14457 4.643387 GGTTGCACAGCCGGGACT 62.643 66.667 2.18 0.00 0.00 3.85
3185 14463 2.741486 TTAGTCCCGGTTGCACAGCC 62.741 60.000 0.00 0.00 0.00 4.85
3186 14464 0.887387 TTTAGTCCCGGTTGCACAGC 60.887 55.000 0.00 0.00 0.00 4.40
3187 14465 1.821216 ATTTAGTCCCGGTTGCACAG 58.179 50.000 0.00 0.00 0.00 3.66
3188 14466 3.275143 CATATTTAGTCCCGGTTGCACA 58.725 45.455 0.00 0.00 0.00 4.57
3189 14467 2.032924 GCATATTTAGTCCCGGTTGCAC 59.967 50.000 0.00 0.00 0.00 4.57
3190 14468 2.294074 GCATATTTAGTCCCGGTTGCA 58.706 47.619 0.00 0.00 0.00 4.08
3191 14469 1.263217 CGCATATTTAGTCCCGGTTGC 59.737 52.381 0.00 0.00 0.00 4.17
3192 14470 1.263217 GCGCATATTTAGTCCCGGTTG 59.737 52.381 0.30 0.00 0.00 3.77
3193 14471 1.589803 GCGCATATTTAGTCCCGGTT 58.410 50.000 0.30 0.00 0.00 4.44
3194 14472 0.599204 CGCGCATATTTAGTCCCGGT 60.599 55.000 8.75 0.00 0.00 5.28
3195 14473 0.319211 TCGCGCATATTTAGTCCCGG 60.319 55.000 8.75 0.00 0.00 5.73
3196 14474 0.782384 GTCGCGCATATTTAGTCCCG 59.218 55.000 8.75 0.00 0.00 5.14
3197 14475 2.150397 AGTCGCGCATATTTAGTCCC 57.850 50.000 8.75 0.00 0.00 4.46
3198 14476 4.980434 TCTTTAGTCGCGCATATTTAGTCC 59.020 41.667 8.75 0.00 0.00 3.85
3199 14477 5.107951 GGTCTTTAGTCGCGCATATTTAGTC 60.108 44.000 8.75 0.00 0.00 2.59
3200 14478 4.743644 GGTCTTTAGTCGCGCATATTTAGT 59.256 41.667 8.75 0.00 0.00 2.24
3201 14479 4.150098 GGGTCTTTAGTCGCGCATATTTAG 59.850 45.833 8.75 0.00 0.00 1.85
3202 14480 4.053295 GGGTCTTTAGTCGCGCATATTTA 58.947 43.478 8.75 0.00 0.00 1.40
3203 14481 2.870411 GGGTCTTTAGTCGCGCATATTT 59.130 45.455 8.75 0.00 0.00 1.40
3204 14482 2.480845 GGGTCTTTAGTCGCGCATATT 58.519 47.619 8.75 0.00 0.00 1.28
3205 14483 1.270147 GGGGTCTTTAGTCGCGCATAT 60.270 52.381 8.75 0.00 0.00 1.78
3206 14484 0.103572 GGGGTCTTTAGTCGCGCATA 59.896 55.000 8.75 0.00 0.00 3.14
3207 14485 1.153429 GGGGTCTTTAGTCGCGCAT 60.153 57.895 8.75 0.00 0.00 4.73
3208 14486 2.263540 GGGGTCTTTAGTCGCGCA 59.736 61.111 8.75 0.00 0.00 6.09
3209 14487 2.510918 GGGGGTCTTTAGTCGCGC 60.511 66.667 0.00 0.00 0.00 6.86
3225 14503 3.735037 GAGGCGCGACTAAAGGGGG 62.735 68.421 18.29 0.00 0.00 5.40
3226 14504 2.202892 GAGGCGCGACTAAAGGGG 60.203 66.667 18.29 0.00 0.00 4.79
3227 14505 0.458669 TAAGAGGCGCGACTAAAGGG 59.541 55.000 18.29 0.00 0.00 3.95
3228 14506 1.557651 GTAAGAGGCGCGACTAAAGG 58.442 55.000 18.29 0.00 0.00 3.11
3229 14507 1.189403 CGTAAGAGGCGCGACTAAAG 58.811 55.000 18.29 1.48 43.02 1.85
3230 14508 0.179156 CCGTAAGAGGCGCGACTAAA 60.179 55.000 18.29 0.00 43.02 1.85
3231 14509 1.026182 TCCGTAAGAGGCGCGACTAA 61.026 55.000 18.29 0.00 43.02 2.24
3232 14510 1.450134 TCCGTAAGAGGCGCGACTA 60.450 57.895 18.29 0.00 43.02 2.59
3233 14511 2.749044 TCCGTAAGAGGCGCGACT 60.749 61.111 18.34 18.34 43.02 4.18
3234 14512 2.578981 GTCCGTAAGAGGCGCGAC 60.579 66.667 12.10 7.34 43.02 5.19
3235 14513 3.818787 GGTCCGTAAGAGGCGCGA 61.819 66.667 12.10 0.00 43.02 5.87
3239 14517 3.818787 TCGCGGTCCGTAAGAGGC 61.819 66.667 13.94 0.00 43.02 4.70
3240 14518 1.091771 TAGTCGCGGTCCGTAAGAGG 61.092 60.000 13.94 0.00 43.02 3.69
3241 14519 0.729116 TTAGTCGCGGTCCGTAAGAG 59.271 55.000 13.94 0.05 43.02 2.85
3242 14520 1.131126 CTTTAGTCGCGGTCCGTAAGA 59.869 52.381 13.94 7.60 43.02 2.10
3243 14521 1.542544 CTTTAGTCGCGGTCCGTAAG 58.457 55.000 13.94 5.19 38.35 2.34
3244 14522 0.171007 CCTTTAGTCGCGGTCCGTAA 59.829 55.000 13.94 0.27 38.35 3.18
3245 14523 1.802636 CCTTTAGTCGCGGTCCGTA 59.197 57.895 13.94 0.00 38.35 4.02
3246 14524 2.570181 CCTTTAGTCGCGGTCCGT 59.430 61.111 13.94 0.00 38.35 4.69
3247 14525 2.830704 AAGCCTTTAGTCGCGGTCCG 62.831 60.000 6.99 6.99 38.61 4.79
3248 14526 0.672711 AAAGCCTTTAGTCGCGGTCC 60.673 55.000 6.13 0.00 0.00 4.46
3249 14527 1.925185 CTAAAGCCTTTAGTCGCGGTC 59.075 52.381 14.78 0.00 38.21 4.79
3250 14528 2.005971 CTAAAGCCTTTAGTCGCGGT 57.994 50.000 14.78 0.00 38.21 5.68
3257 14535 3.055312 AGAACCGGGACTAAAGCCTTTAG 60.055 47.826 20.10 20.10 46.26 1.85
3258 14536 2.908351 AGAACCGGGACTAAAGCCTTTA 59.092 45.455 6.32 0.00 0.00 1.85
3259 14537 1.703513 AGAACCGGGACTAAAGCCTTT 59.296 47.619 6.32 0.00 0.00 3.11
3260 14538 1.359168 AGAACCGGGACTAAAGCCTT 58.641 50.000 6.32 0.00 0.00 4.35
3261 14539 1.003233 CAAGAACCGGGACTAAAGCCT 59.997 52.381 6.32 0.00 0.00 4.58
3262 14540 1.271217 ACAAGAACCGGGACTAAAGCC 60.271 52.381 6.32 0.00 0.00 4.35
3263 14541 1.804748 CACAAGAACCGGGACTAAAGC 59.195 52.381 6.32 0.00 0.00 3.51
3264 14542 2.423577 CCACAAGAACCGGGACTAAAG 58.576 52.381 6.32 1.44 0.00 1.85
3265 14543 1.543871 GCCACAAGAACCGGGACTAAA 60.544 52.381 6.32 0.00 0.00 1.85
3266 14544 0.035739 GCCACAAGAACCGGGACTAA 59.964 55.000 6.32 0.00 0.00 2.24
3267 14545 0.834687 AGCCACAAGAACCGGGACTA 60.835 55.000 6.32 0.00 0.00 2.59
3268 14546 2.147387 AGCCACAAGAACCGGGACT 61.147 57.895 6.32 0.73 0.00 3.85
3269 14547 1.966451 CAGCCACAAGAACCGGGAC 60.966 63.158 6.32 0.00 0.00 4.46
3270 14548 2.144078 TCAGCCACAAGAACCGGGA 61.144 57.895 6.32 0.00 0.00 5.14
3271 14549 1.966451 GTCAGCCACAAGAACCGGG 60.966 63.158 6.32 0.00 0.00 5.73
3272 14550 1.966451 GGTCAGCCACAAGAACCGG 60.966 63.158 0.00 0.00 34.09 5.28
3273 14551 2.317609 CGGTCAGCCACAAGAACCG 61.318 63.158 0.00 0.00 34.09 4.44
3274 14552 1.966451 CCGGTCAGCCACAAGAACC 60.966 63.158 0.00 0.00 34.09 3.62
3275 14553 1.966451 CCCGGTCAGCCACAAGAAC 60.966 63.158 0.00 0.00 34.09 3.01
3276 14554 2.144078 TCCCGGTCAGCCACAAGAA 61.144 57.895 0.00 0.00 34.09 2.52
3277 14555 2.525629 TCCCGGTCAGCCACAAGA 60.526 61.111 0.00 0.00 34.09 3.02
3278 14556 1.541310 TAGTCCCGGTCAGCCACAAG 61.541 60.000 0.00 0.00 34.09 3.16
3279 14557 1.122632 TTAGTCCCGGTCAGCCACAA 61.123 55.000 0.00 0.00 34.09 3.33
3280 14558 1.122632 TTTAGTCCCGGTCAGCCACA 61.123 55.000 0.00 0.00 34.09 4.17
3281 14559 0.391263 CTTTAGTCCCGGTCAGCCAC 60.391 60.000 0.00 0.00 34.09 5.01
3282 14560 1.550130 CCTTTAGTCCCGGTCAGCCA 61.550 60.000 0.00 0.00 34.09 4.75
3283 14561 1.221021 CCTTTAGTCCCGGTCAGCC 59.779 63.158 0.00 0.00 0.00 4.85
3284 14562 1.449778 GCCTTTAGTCCCGGTCAGC 60.450 63.158 0.00 0.00 0.00 4.26
3285 14563 1.221021 GGCCTTTAGTCCCGGTCAG 59.779 63.158 0.00 0.00 0.00 3.51
3286 14564 2.295602 GGGCCTTTAGTCCCGGTCA 61.296 63.158 0.84 0.00 32.00 4.02
3287 14565 2.588439 GGGCCTTTAGTCCCGGTC 59.412 66.667 0.84 0.00 32.00 4.79
3291 14569 2.588439 GGACGGGCCTTTAGTCCC 59.412 66.667 21.39 9.76 46.40 4.46
3293 14571 1.447314 CGTGGACGGGCCTTTAGTC 60.447 63.158 0.84 7.66 37.63 2.59
3294 14572 2.212110 ACGTGGACGGGCCTTTAGT 61.212 57.895 0.84 0.00 44.95 2.24
3295 14573 1.740296 CACGTGGACGGGCCTTTAG 60.740 63.158 7.95 0.00 44.95 1.85
3296 14574 2.344500 CACGTGGACGGGCCTTTA 59.656 61.111 7.95 0.00 44.95 1.85
3297 14575 4.636435 CCACGTGGACGGGCCTTT 62.636 66.667 31.31 0.00 42.34 3.11
3329 14607 3.605412 TAAAGGTCCTCCGCCCCGA 62.605 63.158 0.00 0.00 39.05 5.14
3330 14608 3.078836 TAAAGGTCCTCCGCCCCG 61.079 66.667 0.00 0.00 39.05 5.73
3331 14609 1.969200 GACTAAAGGTCCTCCGCCCC 61.969 65.000 0.00 0.00 38.93 5.80
3332 14610 1.521141 GACTAAAGGTCCTCCGCCC 59.479 63.158 0.00 0.00 38.93 6.13
3340 14618 1.135170 CGAGAACCGGGACTAAAGGTC 60.135 57.143 6.32 0.00 43.79 3.85
3341 14619 0.893447 CGAGAACCGGGACTAAAGGT 59.107 55.000 6.32 0.00 40.50 3.50
3342 14620 0.893447 ACGAGAACCGGGACTAAAGG 59.107 55.000 6.32 0.00 43.93 3.11
3343 14621 1.403780 CCACGAGAACCGGGACTAAAG 60.404 57.143 6.32 2.68 46.66 1.85
3344 14622 0.604578 CCACGAGAACCGGGACTAAA 59.395 55.000 6.32 0.00 46.66 1.85
3345 14623 1.880819 GCCACGAGAACCGGGACTAA 61.881 60.000 6.32 0.00 46.66 2.24
3346 14624 2.345760 GCCACGAGAACCGGGACTA 61.346 63.158 6.32 0.00 46.66 2.59
3347 14625 3.692406 GCCACGAGAACCGGGACT 61.692 66.667 6.32 4.01 46.66 3.85
3348 14626 4.754667 GGCCACGAGAACCGGGAC 62.755 72.222 6.32 0.00 46.66 4.46
3350 14628 4.323477 TTGGCCACGAGAACCGGG 62.323 66.667 3.88 0.00 43.93 5.73
3351 14629 3.047877 GTTGGCCACGAGAACCGG 61.048 66.667 3.88 0.00 43.93 5.28


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.