Multiple sequence alignment - TraesCS4D01G328800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G328800 chr4D 100.000 3447 0 0 1 3447 487121858 487118412 0.000000e+00 6366
1 TraesCS4D01G328800 chr4D 85.622 1850 147 49 606 2447 487230484 487228746 0.000000e+00 1832
2 TraesCS4D01G328800 chr4D 88.143 1400 120 11 596 1986 487291495 487290133 0.000000e+00 1624
3 TraesCS4D01G328800 chr4D 87.855 1301 93 27 682 1972 487345996 487344751 0.000000e+00 1467
4 TraesCS4D01G328800 chr4D 88.285 1067 67 31 2013 3058 487344184 487343155 0.000000e+00 1225
5 TraesCS4D01G328800 chr4D 95.215 606 24 2 1 602 119369162 119369766 0.000000e+00 953
6 TraesCS4D01G328800 chr4D 88.286 811 54 22 1664 2454 487296181 487295392 0.000000e+00 933
7 TraesCS4D01G328800 chr4D 93.992 516 22 3 596 1103 487296706 487296192 0.000000e+00 773
8 TraesCS4D01G328800 chr4D 89.983 589 46 8 2478 3058 487295400 487294817 0.000000e+00 749
9 TraesCS4D01G328800 chr4D 95.643 459 18 1 2602 3058 487228676 487228218 0.000000e+00 736
10 TraesCS4D01G328800 chr4D 92.170 447 28 5 2610 3054 487288867 487288426 2.920000e-175 625
11 TraesCS4D01G328800 chr4D 83.987 637 50 23 2013 2628 487289583 487288978 6.460000e-157 564
12 TraesCS4D01G328800 chr5A 88.639 2491 176 46 606 3058 668581090 668578669 0.000000e+00 2933
13 TraesCS4D01G328800 chr5A 88.153 2085 163 30 986 3058 668272111 668270099 0.000000e+00 2405
14 TraesCS4D01G328800 chr5A 86.700 1188 98 32 849 2018 668226878 668225733 0.000000e+00 1264
15 TraesCS4D01G328800 chr5A 88.550 1083 65 30 1999 3058 668225720 668224674 0.000000e+00 1258
16 TraesCS4D01G328800 chr5A 85.261 1262 95 39 667 1908 668767215 668768405 0.000000e+00 1216
17 TraesCS4D01G328800 chr5A 85.485 1061 94 38 2016 3058 668769325 668770343 0.000000e+00 1051
18 TraesCS4D01G328800 chr4B 86.528 2123 175 51 858 2952 622335114 622333075 0.000000e+00 2233
19 TraesCS4D01G328800 chr4B 86.279 1392 123 37 611 1972 622438001 622436648 0.000000e+00 1450
20 TraesCS4D01G328800 chr4B 86.522 1061 87 31 2013 3058 622436081 622435062 0.000000e+00 1116
21 TraesCS4D01G328800 chr4B 85.910 1093 94 28 897 1972 622478641 622477592 0.000000e+00 1110
22 TraesCS4D01G328800 chr4B 85.498 924 85 29 2013 2922 622477027 622476139 0.000000e+00 918
23 TraesCS4D01G328800 chr4B 91.406 384 27 4 2583 2961 622614849 622614467 3.940000e-144 521
24 TraesCS4D01G328800 chr4B 91.506 259 22 0 1749 2007 622615565 622615307 1.180000e-94 357
25 TraesCS4D01G328800 chr4B 93.000 100 7 0 3294 3393 622133876 622133777 2.770000e-31 147
26 TraesCS4D01G328800 chrUn 86.279 1392 122 39 611 1972 60287525 60288877 0.000000e+00 1448
27 TraesCS4D01G328800 chrUn 86.073 1393 124 39 611 1972 60350194 60348841 0.000000e+00 1434
28 TraesCS4D01G328800 chrUn 86.522 1061 87 31 2013 3058 60348274 60347255 0.000000e+00 1116
29 TraesCS4D01G328800 chrUn 95.515 602 21 3 1 598 105335368 105335967 0.000000e+00 957
30 TraesCS4D01G328800 chrUn 85.926 945 75 33 2130 3058 60289967 60290869 0.000000e+00 955
31 TraesCS4D01G328800 chrUn 85.926 945 75 33 2130 3058 363200045 363200947 0.000000e+00 955
32 TraesCS4D01G328800 chrUn 85.930 597 56 16 611 1193 60320006 60319424 2.270000e-171 612
33 TraesCS4D01G328800 chr6D 95.492 599 20 4 1 595 41924012 41924607 0.000000e+00 950
34 TraesCS4D01G328800 chr6D 94.472 597 29 4 1 595 325418275 325418869 0.000000e+00 917
35 TraesCS4D01G328800 chr3D 94.684 602 23 4 1 597 442774427 442775024 0.000000e+00 926
36 TraesCS4D01G328800 chr3D 94.059 606 31 2 1 601 376917011 376916406 0.000000e+00 915
37 TraesCS4D01G328800 chr3A 94.667 600 27 2 1 595 729878071 729877472 0.000000e+00 926
38 TraesCS4D01G328800 chr2B 94.640 597 24 3 6 595 441885655 441885060 0.000000e+00 918
39 TraesCS4D01G328800 chr2D 94.069 607 24 5 1 596 50138461 50139066 0.000000e+00 911


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G328800 chr4D 487118412 487121858 3446 True 6366.0 6366 100.000000 1 3447 1 chr4D.!!$R1 3446
1 TraesCS4D01G328800 chr4D 487343155 487345996 2841 True 1346.0 1467 88.070000 682 3058 2 chr4D.!!$R4 2376
2 TraesCS4D01G328800 chr4D 487228218 487230484 2266 True 1284.0 1832 90.632500 606 3058 2 chr4D.!!$R2 2452
3 TraesCS4D01G328800 chr4D 119369162 119369766 604 False 953.0 953 95.215000 1 602 1 chr4D.!!$F1 601
4 TraesCS4D01G328800 chr4D 487288426 487296706 8280 True 878.0 1624 89.426833 596 3058 6 chr4D.!!$R3 2462
5 TraesCS4D01G328800 chr5A 668578669 668581090 2421 True 2933.0 2933 88.639000 606 3058 1 chr5A.!!$R2 2452
6 TraesCS4D01G328800 chr5A 668270099 668272111 2012 True 2405.0 2405 88.153000 986 3058 1 chr5A.!!$R1 2072
7 TraesCS4D01G328800 chr5A 668224674 668226878 2204 True 1261.0 1264 87.625000 849 3058 2 chr5A.!!$R3 2209
8 TraesCS4D01G328800 chr5A 668767215 668770343 3128 False 1133.5 1216 85.373000 667 3058 2 chr5A.!!$F1 2391
9 TraesCS4D01G328800 chr4B 622333075 622335114 2039 True 2233.0 2233 86.528000 858 2952 1 chr4B.!!$R2 2094
10 TraesCS4D01G328800 chr4B 622435062 622438001 2939 True 1283.0 1450 86.400500 611 3058 2 chr4B.!!$R3 2447
11 TraesCS4D01G328800 chr4B 622476139 622478641 2502 True 1014.0 1110 85.704000 897 2922 2 chr4B.!!$R4 2025
12 TraesCS4D01G328800 chr4B 622614467 622615565 1098 True 439.0 521 91.456000 1749 2961 2 chr4B.!!$R5 1212
13 TraesCS4D01G328800 chrUn 60347255 60350194 2939 True 1275.0 1434 86.297500 611 3058 2 chrUn.!!$R2 2447
14 TraesCS4D01G328800 chrUn 60287525 60290869 3344 False 1201.5 1448 86.102500 611 3058 2 chrUn.!!$F3 2447
15 TraesCS4D01G328800 chrUn 105335368 105335967 599 False 957.0 957 95.515000 1 598 1 chrUn.!!$F1 597
16 TraesCS4D01G328800 chrUn 363200045 363200947 902 False 955.0 955 85.926000 2130 3058 1 chrUn.!!$F2 928
17 TraesCS4D01G328800 chrUn 60319424 60320006 582 True 612.0 612 85.930000 611 1193 1 chrUn.!!$R1 582
18 TraesCS4D01G328800 chr6D 41924012 41924607 595 False 950.0 950 95.492000 1 595 1 chr6D.!!$F1 594
19 TraesCS4D01G328800 chr6D 325418275 325418869 594 False 917.0 917 94.472000 1 595 1 chr6D.!!$F2 594
20 TraesCS4D01G328800 chr3D 442774427 442775024 597 False 926.0 926 94.684000 1 597 1 chr3D.!!$F1 596
21 TraesCS4D01G328800 chr3D 376916406 376917011 605 True 915.0 915 94.059000 1 601 1 chr3D.!!$R1 600
22 TraesCS4D01G328800 chr3A 729877472 729878071 599 True 926.0 926 94.667000 1 595 1 chr3A.!!$R1 594
23 TraesCS4D01G328800 chr2B 441885060 441885655 595 True 918.0 918 94.640000 6 595 1 chr2B.!!$R1 589
24 TraesCS4D01G328800 chr2D 50138461 50139066 605 False 911.0 911 94.069000 1 596 1 chr2D.!!$F1 595

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
530 545 0.249280 CAACAGGAAAACCGGGCAAC 60.249 55.0 6.32 0.0 0.00 4.17 F
544 559 0.249868 GGCAACCAAACAGGCCTTTC 60.250 55.0 0.00 0.0 43.09 2.62 F
552 567 0.539669 AACAGGCCTTTCCTTTCCCG 60.540 55.0 0.00 0.0 44.75 5.14 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2422 9035 0.474614 GGAACCTTCCTCCATAGCCC 59.525 60.000 0.00 0.0 44.11 5.19 R
2440 9053 1.299468 GGCGTGCTCGATCTACAGG 60.299 63.158 13.13 0.0 39.71 4.00 R
2630 9407 7.307396 CCAACTATTACAATCTGGTCATAAGCG 60.307 40.741 0.00 0.0 0.00 4.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
285 295 2.202866 CCGATGGTGAGGCAGTAGT 58.797 57.895 0.00 0.00 0.00 2.73
445 460 2.512515 GCCTGGCTCGCGAGAAAT 60.513 61.111 38.74 0.00 41.32 2.17
457 472 1.286501 CGAGAAATTGCCGATCCGAA 58.713 50.000 0.00 0.00 0.00 4.30
524 539 1.530655 AGGCCCAACAGGAAAACCG 60.531 57.895 0.00 0.00 38.24 4.44
525 540 2.570284 GGCCCAACAGGAAAACCGG 61.570 63.158 0.00 0.00 38.24 5.28
526 541 2.570284 GCCCAACAGGAAAACCGGG 61.570 63.158 6.32 0.00 38.24 5.73
527 542 2.570284 CCCAACAGGAAAACCGGGC 61.570 63.158 6.32 0.00 38.24 6.13
528 543 1.830408 CCAACAGGAAAACCGGGCA 60.830 57.895 6.32 0.00 0.00 5.36
529 544 1.395826 CCAACAGGAAAACCGGGCAA 61.396 55.000 6.32 0.00 0.00 4.52
530 545 0.249280 CAACAGGAAAACCGGGCAAC 60.249 55.000 6.32 0.00 0.00 4.17
542 557 3.549730 GGCAACCAAACAGGCCTT 58.450 55.556 0.00 0.00 43.09 4.35
543 558 1.829456 GGCAACCAAACAGGCCTTT 59.171 52.632 0.00 0.00 43.09 3.11
544 559 0.249868 GGCAACCAAACAGGCCTTTC 60.250 55.000 0.00 0.00 43.09 2.62
545 560 0.249868 GCAACCAAACAGGCCTTTCC 60.250 55.000 0.00 0.00 43.14 3.13
547 562 1.762370 CAACCAAACAGGCCTTTCCTT 59.238 47.619 0.00 0.00 44.75 3.36
548 563 2.170397 CAACCAAACAGGCCTTTCCTTT 59.830 45.455 0.00 0.00 44.75 3.11
549 564 2.039418 ACCAAACAGGCCTTTCCTTTC 58.961 47.619 0.00 0.00 44.75 2.62
550 565 1.344438 CCAAACAGGCCTTTCCTTTCC 59.656 52.381 0.00 0.00 44.75 3.13
551 566 1.344438 CAAACAGGCCTTTCCTTTCCC 59.656 52.381 0.00 0.00 44.75 3.97
552 567 0.539669 AACAGGCCTTTCCTTTCCCG 60.540 55.000 0.00 0.00 44.75 5.14
553 568 2.035783 AGGCCTTTCCTTTCCCGC 59.964 61.111 0.00 0.00 44.75 6.13
554 569 3.440415 GGCCTTTCCTTTCCCGCG 61.440 66.667 0.00 0.00 0.00 6.46
555 570 4.116328 GCCTTTCCTTTCCCGCGC 62.116 66.667 0.00 0.00 0.00 6.86
556 571 3.799755 CCTTTCCTTTCCCGCGCG 61.800 66.667 25.67 25.67 0.00 6.86
557 572 3.799755 CTTTCCTTTCCCGCGCGG 61.800 66.667 41.00 41.00 0.00 6.46
603 618 2.696187 ACCAAACACGCCCAAAATAACT 59.304 40.909 0.00 0.00 0.00 2.24
644 660 2.268920 GCCTGATCAACCCAGCGA 59.731 61.111 0.00 0.00 0.00 4.93
669 685 1.600636 CCAGCCGTGACAACACCAT 60.601 57.895 0.00 0.00 43.34 3.55
697 714 2.584835 ACTAGCCAGTTGATGCCAAA 57.415 45.000 0.00 0.00 33.49 3.28
761 782 1.610624 GGTTGCTTCCTTCCGTGATCA 60.611 52.381 0.00 0.00 0.00 2.92
769 790 0.905357 CTTCCGTGATCACCCTCCTT 59.095 55.000 20.03 0.00 0.00 3.36
873 909 1.747552 TGCTACTGCTAGCTACTCGCT 60.748 52.381 17.23 0.00 45.20 4.93
996 1061 5.764432 AGTACCTAGTAGTAGAACTTGGGG 58.236 45.833 6.14 0.00 43.93 4.96
997 1062 3.372897 ACCTAGTAGTAGAACTTGGGGC 58.627 50.000 6.14 0.00 43.93 5.80
999 1064 2.226962 AGTAGTAGAACTTGGGGCGA 57.773 50.000 0.00 0.00 0.00 5.54
1149 6410 1.967066 CTCTTCTATGGTGGCGAGGAT 59.033 52.381 0.00 0.00 0.00 3.24
1242 6506 3.418913 CCGCACCGTTCGCATGAA 61.419 61.111 0.00 0.00 0.00 2.57
1247 6511 1.990799 CACCGTTCGCATGAAGAGTA 58.009 50.000 0.00 0.00 33.98 2.59
1491 6773 1.179174 CGGAGATGATCAGGGGCGTA 61.179 60.000 0.09 0.00 0.00 4.42
1609 6891 2.036428 CTCCATGCTCCGCTCCATCA 62.036 60.000 0.00 0.00 0.00 3.07
1857 7195 1.323534 CTAACCGAGCGGATCAAAACG 59.676 52.381 16.83 0.00 38.96 3.60
2117 8312 2.580815 CCTGGCGTGCTGATCTCA 59.419 61.111 0.00 0.00 0.00 3.27
2137 8726 4.577246 GGTGAGCGCGCTAGAGGG 62.577 72.222 36.69 6.16 0.00 4.30
2153 8742 2.448542 GGGCTGGGGCTGGAGATA 60.449 66.667 0.00 0.00 38.73 1.98
2307 8916 9.249053 TGTTTTCTGCACTATTATAAATTGGGA 57.751 29.630 0.00 0.00 0.00 4.37
2422 9035 1.154413 GGCATTGTTCACGAGTGCG 60.154 57.895 0.00 0.00 44.79 5.34
2439 9052 1.984288 GCGGGCTATGGAGGAAGGTT 61.984 60.000 0.00 0.00 0.00 3.50
2440 9053 0.106894 CGGGCTATGGAGGAAGGTTC 59.893 60.000 0.00 0.00 0.00 3.62
2464 9081 2.533266 AGATCGAGCACGCCAATATT 57.467 45.000 2.38 0.00 39.58 1.28
2465 9082 2.408050 AGATCGAGCACGCCAATATTC 58.592 47.619 2.38 0.00 39.58 1.75
2467 9084 2.238942 TCGAGCACGCCAATATTCAT 57.761 45.000 0.00 0.00 39.58 2.57
2468 9085 2.135139 TCGAGCACGCCAATATTCATC 58.865 47.619 0.00 0.00 39.58 2.92
2473 9091 2.033801 GCACGCCAATATTCATCAAGCT 59.966 45.455 0.00 0.00 0.00 3.74
2476 9097 3.947196 ACGCCAATATTCATCAAGCTTGA 59.053 39.130 30.23 30.23 42.14 3.02
2630 9407 6.223351 AGTAGTACTATCCAAAGTTCAGCC 57.777 41.667 5.75 0.00 0.00 4.85
2635 9412 2.489938 ATCCAAAGTTCAGCCGCTTA 57.510 45.000 0.00 0.00 0.00 3.09
2663 9440 5.354234 CCAGATTGTAATAGTTGGGTGTGTC 59.646 44.000 0.00 0.00 0.00 3.67
2999 9803 7.455058 TGTGTCCATTTTACACCACTAGTAAT 58.545 34.615 0.00 0.00 45.33 1.89
3058 9862 8.813282 GTTATTTTATGGTTTTATCCAAAGCGG 58.187 33.333 0.00 0.00 44.56 5.52
3059 9863 4.993029 TTATGGTTTTATCCAAAGCGGG 57.007 40.909 0.00 0.00 44.56 6.13
3060 9864 1.551452 TGGTTTTATCCAAAGCGGGG 58.449 50.000 0.00 0.00 44.56 5.73
3061 9865 0.174845 GGTTTTATCCAAAGCGGGGC 59.825 55.000 0.00 0.00 33.30 5.80
3062 9866 0.179148 GTTTTATCCAAAGCGGGGCG 60.179 55.000 0.00 0.00 34.36 6.13
3063 9867 0.322636 TTTTATCCAAAGCGGGGCGA 60.323 50.000 0.00 0.00 34.36 5.54
3064 9868 0.106918 TTTATCCAAAGCGGGGCGAT 60.107 50.000 0.00 0.00 34.36 4.58
3065 9869 0.817634 TTATCCAAAGCGGGGCGATG 60.818 55.000 0.00 0.00 34.36 3.84
3068 9872 2.513666 CAAAGCGGGGCGATGCTA 60.514 61.111 0.00 0.00 41.46 3.49
3069 9873 2.112198 CAAAGCGGGGCGATGCTAA 61.112 57.895 0.00 0.00 41.46 3.09
3070 9874 1.152963 AAAGCGGGGCGATGCTAAT 60.153 52.632 0.00 0.00 41.46 1.73
3071 9875 0.751643 AAAGCGGGGCGATGCTAATT 60.752 50.000 0.00 0.00 41.46 1.40
3072 9876 1.166531 AAGCGGGGCGATGCTAATTC 61.167 55.000 0.00 0.00 41.46 2.17
3073 9877 2.954753 GCGGGGCGATGCTAATTCG 61.955 63.158 0.00 0.00 39.55 3.34
3078 9882 2.495551 CGATGCTAATTCGCGCGC 60.496 61.111 27.95 23.91 0.00 6.86
3079 9883 2.495551 GATGCTAATTCGCGCGCG 60.496 61.111 44.84 44.84 41.35 6.86
3112 9916 3.740513 GGTTTCCGACAAGCCGTT 58.259 55.556 0.00 0.00 0.00 4.44
3113 9917 2.027325 GGTTTCCGACAAGCCGTTT 58.973 52.632 0.00 0.00 0.00 3.60
3114 9918 1.228533 GGTTTCCGACAAGCCGTTTA 58.771 50.000 0.00 0.00 0.00 2.01
3115 9919 1.603326 GGTTTCCGACAAGCCGTTTAA 59.397 47.619 0.00 0.00 0.00 1.52
3116 9920 2.033174 GGTTTCCGACAAGCCGTTTAAA 59.967 45.455 0.00 0.00 0.00 1.52
3117 9921 3.038017 GTTTCCGACAAGCCGTTTAAAC 58.962 45.455 8.35 8.35 0.00 2.01
3118 9922 1.228533 TCCGACAAGCCGTTTAAACC 58.771 50.000 12.66 0.00 0.00 3.27
3119 9923 1.202675 TCCGACAAGCCGTTTAAACCT 60.203 47.619 12.66 2.20 0.00 3.50
3120 9924 1.069500 CCGACAAGCCGTTTAAACCTG 60.069 52.381 12.66 5.56 0.00 4.00
3121 9925 1.868498 CGACAAGCCGTTTAAACCTGA 59.132 47.619 12.66 0.00 0.00 3.86
3122 9926 2.482721 CGACAAGCCGTTTAAACCTGAT 59.517 45.455 12.66 0.29 0.00 2.90
3123 9927 3.058501 CGACAAGCCGTTTAAACCTGATT 60.059 43.478 12.66 6.49 0.00 2.57
3124 9928 4.152759 CGACAAGCCGTTTAAACCTGATTA 59.847 41.667 12.66 0.00 0.00 1.75
3125 9929 5.622770 ACAAGCCGTTTAAACCTGATTAG 57.377 39.130 12.66 6.95 0.00 1.73
3142 9946 6.832520 TGATTAGGAAAGTGCATTTTAGCA 57.167 33.333 7.22 0.00 43.35 3.49
3157 9961 9.669887 TGCATTTTAGCATTAATTGAAGGATTT 57.330 25.926 0.00 0.00 40.11 2.17
3158 9962 9.925268 GCATTTTAGCATTAATTGAAGGATTTG 57.075 29.630 0.00 0.00 0.00 2.32
3161 9965 9.874205 TTTTAGCATTAATTGAAGGATTTGAGG 57.126 29.630 0.00 0.00 0.00 3.86
3162 9966 8.821686 TTAGCATTAATTGAAGGATTTGAGGA 57.178 30.769 0.00 0.00 0.00 3.71
3163 9967 7.105241 AGCATTAATTGAAGGATTTGAGGAC 57.895 36.000 0.00 0.00 0.00 3.85
3164 9968 6.894103 AGCATTAATTGAAGGATTTGAGGACT 59.106 34.615 0.00 0.00 0.00 3.85
3165 9969 8.055181 AGCATTAATTGAAGGATTTGAGGACTA 58.945 33.333 0.00 0.00 0.00 2.59
3166 9970 8.686334 GCATTAATTGAAGGATTTGAGGACTAA 58.314 33.333 0.00 0.00 0.00 2.24
3173 9977 9.618890 TTGAAGGATTTGAGGACTAATTAGATG 57.381 33.333 19.38 0.00 0.00 2.90
3174 9978 8.213679 TGAAGGATTTGAGGACTAATTAGATGG 58.786 37.037 19.38 0.00 0.00 3.51
3175 9979 7.084268 AGGATTTGAGGACTAATTAGATGGG 57.916 40.000 19.38 0.00 0.00 4.00
3176 9980 5.707764 GGATTTGAGGACTAATTAGATGGGC 59.292 44.000 19.38 5.12 0.00 5.36
3177 9981 4.706842 TTGAGGACTAATTAGATGGGCC 57.293 45.455 19.38 11.04 0.00 5.80
3178 9982 3.941629 TGAGGACTAATTAGATGGGCCT 58.058 45.455 19.38 14.93 0.00 5.19
3179 9983 5.087923 TGAGGACTAATTAGATGGGCCTA 57.912 43.478 19.38 0.00 0.00 3.93
3180 9984 5.087323 TGAGGACTAATTAGATGGGCCTAG 58.913 45.833 19.38 0.00 0.00 3.02
3181 9985 5.088026 GAGGACTAATTAGATGGGCCTAGT 58.912 45.833 19.38 1.55 0.00 2.57
3182 9986 4.841246 AGGACTAATTAGATGGGCCTAGTG 59.159 45.833 19.38 0.00 0.00 2.74
3183 9987 4.838986 GGACTAATTAGATGGGCCTAGTGA 59.161 45.833 19.38 0.00 0.00 3.41
3184 9988 5.279556 GGACTAATTAGATGGGCCTAGTGAC 60.280 48.000 19.38 0.00 0.00 3.67
3185 9989 5.216622 ACTAATTAGATGGGCCTAGTGACA 58.783 41.667 19.38 0.00 0.00 3.58
3186 9990 5.846714 ACTAATTAGATGGGCCTAGTGACAT 59.153 40.000 19.38 0.00 0.00 3.06
3187 9991 4.630644 ATTAGATGGGCCTAGTGACATG 57.369 45.455 4.53 0.00 0.00 3.21
3188 9992 0.471617 AGATGGGCCTAGTGACATGC 59.528 55.000 4.53 0.00 0.00 4.06
3189 9993 0.181114 GATGGGCCTAGTGACATGCA 59.819 55.000 4.53 0.00 0.00 3.96
3190 9994 0.848735 ATGGGCCTAGTGACATGCAT 59.151 50.000 4.53 0.00 0.00 3.96
3191 9995 0.107066 TGGGCCTAGTGACATGCATG 60.107 55.000 25.09 25.09 0.00 4.06
3192 9996 0.107017 GGGCCTAGTGACATGCATGT 60.107 55.000 31.82 31.82 45.16 3.21
3193 9997 1.019673 GGCCTAGTGACATGCATGTG 58.980 55.000 35.92 20.84 41.95 3.21
3194 9998 1.679944 GGCCTAGTGACATGCATGTGT 60.680 52.381 35.92 21.42 41.95 3.72
3195 9999 2.086869 GCCTAGTGACATGCATGTGTT 58.913 47.619 35.92 21.63 41.95 3.32
3196 10000 2.159476 GCCTAGTGACATGCATGTGTTG 60.159 50.000 35.92 19.24 41.95 3.33
3197 10001 2.421073 CCTAGTGACATGCATGTGTTGG 59.579 50.000 35.92 23.42 41.95 3.77
3198 10002 2.275134 AGTGACATGCATGTGTTGGA 57.725 45.000 35.92 11.90 41.95 3.53
3199 10003 2.799017 AGTGACATGCATGTGTTGGAT 58.201 42.857 35.92 10.43 41.95 3.41
3205 10009 1.381522 TGCATGTGTTGGATGGATCG 58.618 50.000 0.00 0.00 0.00 3.69
3206 10010 0.029834 GCATGTGTTGGATGGATCGC 59.970 55.000 0.00 0.00 0.00 4.58
3207 10011 1.381522 CATGTGTTGGATGGATCGCA 58.618 50.000 0.00 0.00 0.00 5.10
3208 10012 1.064505 CATGTGTTGGATGGATCGCAC 59.935 52.381 0.00 0.00 0.00 5.34
3209 10013 1.018752 TGTGTTGGATGGATCGCACG 61.019 55.000 0.00 0.00 31.79 5.34
3210 10014 0.739462 GTGTTGGATGGATCGCACGA 60.739 55.000 0.00 0.00 0.00 4.35
3211 10015 0.739462 TGTTGGATGGATCGCACGAC 60.739 55.000 0.00 0.00 0.00 4.34
3212 10016 1.153449 TTGGATGGATCGCACGACC 60.153 57.895 0.00 0.00 0.00 4.79
3213 10017 1.613317 TTGGATGGATCGCACGACCT 61.613 55.000 0.00 0.00 0.00 3.85
3214 10018 1.300233 GGATGGATCGCACGACCTC 60.300 63.158 0.00 0.00 0.00 3.85
3215 10019 1.300233 GATGGATCGCACGACCTCC 60.300 63.158 5.87 5.87 0.00 4.30
3216 10020 1.739338 GATGGATCGCACGACCTCCT 61.739 60.000 12.49 0.99 0.00 3.69
3217 10021 1.330655 ATGGATCGCACGACCTCCTT 61.331 55.000 12.49 5.14 0.00 3.36
3218 10022 1.227002 GGATCGCACGACCTCCTTC 60.227 63.158 5.62 0.00 0.00 3.46
3219 10023 1.511305 GATCGCACGACCTCCTTCA 59.489 57.895 0.00 0.00 0.00 3.02
3220 10024 0.802607 GATCGCACGACCTCCTTCAC 60.803 60.000 0.00 0.00 0.00 3.18
3221 10025 2.543687 ATCGCACGACCTCCTTCACG 62.544 60.000 0.00 0.00 0.00 4.35
3222 10026 3.112709 GCACGACCTCCTTCACGC 61.113 66.667 0.00 0.00 0.00 5.34
3223 10027 2.805353 CACGACCTCCTTCACGCG 60.805 66.667 3.53 3.53 0.00 6.01
3224 10028 4.052229 ACGACCTCCTTCACGCGG 62.052 66.667 12.47 0.00 0.00 6.46
3225 10029 4.052229 CGACCTCCTTCACGCGGT 62.052 66.667 12.47 0.00 0.00 5.68
3226 10030 2.432628 GACCTCCTTCACGCGGTG 60.433 66.667 12.47 6.71 34.45 4.94
3227 10031 3.934391 GACCTCCTTCACGCGGTGG 62.934 68.421 12.47 6.84 40.26 4.61
3228 10032 4.760047 CCTCCTTCACGCGGTGGG 62.760 72.222 12.47 7.21 33.87 4.61
3239 10043 3.006728 CGGTGGGCCTCAAGGGTA 61.007 66.667 4.53 0.00 37.43 3.69
3240 10044 2.598787 CGGTGGGCCTCAAGGGTAA 61.599 63.158 4.53 0.00 37.43 2.85
3241 10045 1.771646 GGTGGGCCTCAAGGGTAAA 59.228 57.895 4.53 0.00 37.43 2.01
3242 10046 0.113580 GGTGGGCCTCAAGGGTAAAA 59.886 55.000 4.53 0.00 37.43 1.52
3243 10047 1.254026 GTGGGCCTCAAGGGTAAAAC 58.746 55.000 4.53 0.00 37.43 2.43
3244 10048 1.154430 TGGGCCTCAAGGGTAAAACT 58.846 50.000 4.53 0.00 37.43 2.66
3245 10049 1.501604 TGGGCCTCAAGGGTAAAACTT 59.498 47.619 4.53 0.00 37.43 2.66
3246 10050 1.893137 GGGCCTCAAGGGTAAAACTTG 59.107 52.381 0.84 0.00 45.08 3.16
3247 10051 2.594131 GGCCTCAAGGGTAAAACTTGT 58.406 47.619 0.00 0.00 44.29 3.16
3248 10052 2.557056 GGCCTCAAGGGTAAAACTTGTC 59.443 50.000 0.00 0.00 44.29 3.18
3249 10053 2.225727 GCCTCAAGGGTAAAACTTGTCG 59.774 50.000 5.24 0.00 44.29 4.35
3250 10054 2.812011 CCTCAAGGGTAAAACTTGTCGG 59.188 50.000 5.24 4.19 44.29 4.79
3251 10055 2.223745 TCAAGGGTAAAACTTGTCGGC 58.776 47.619 5.24 0.00 44.29 5.54
3252 10056 2.158726 TCAAGGGTAAAACTTGTCGGCT 60.159 45.455 5.24 0.00 44.29 5.52
3253 10057 1.892209 AGGGTAAAACTTGTCGGCTG 58.108 50.000 0.00 0.00 0.00 4.85
3254 10058 1.418637 AGGGTAAAACTTGTCGGCTGA 59.581 47.619 0.00 0.00 0.00 4.26
3255 10059 2.039879 AGGGTAAAACTTGTCGGCTGAT 59.960 45.455 0.00 0.00 0.00 2.90
3256 10060 2.817844 GGGTAAAACTTGTCGGCTGATT 59.182 45.455 0.00 0.00 0.00 2.57
3257 10061 3.365969 GGGTAAAACTTGTCGGCTGATTG 60.366 47.826 0.00 0.00 0.00 2.67
3258 10062 2.422276 AAAACTTGTCGGCTGATTGC 57.578 45.000 0.00 0.00 41.94 3.56
3259 10063 1.609208 AAACTTGTCGGCTGATTGCT 58.391 45.000 0.00 0.00 42.39 3.91
3260 10064 1.160137 AACTTGTCGGCTGATTGCTC 58.840 50.000 0.00 0.00 42.39 4.26
3261 10065 0.674895 ACTTGTCGGCTGATTGCTCC 60.675 55.000 0.00 0.00 42.39 4.70
3262 10066 1.699656 CTTGTCGGCTGATTGCTCCG 61.700 60.000 0.00 0.00 44.16 4.63
3263 10067 3.567797 GTCGGCTGATTGCTCCGC 61.568 66.667 0.00 0.00 42.65 5.54
3266 10070 3.127533 GGCTGATTGCTCCGCGTT 61.128 61.111 4.92 0.00 42.39 4.84
3267 10071 2.099062 GCTGATTGCTCCGCGTTG 59.901 61.111 4.92 0.00 38.95 4.10
3268 10072 2.787249 CTGATTGCTCCGCGTTGG 59.213 61.111 4.92 0.00 40.09 3.77
3276 10080 2.106131 TCCGCGTTGGATGGATCG 59.894 61.111 4.92 0.00 43.74 3.69
3277 10081 3.640000 CCGCGTTGGATGGATCGC 61.640 66.667 4.92 0.00 42.00 4.58
3278 10082 3.640000 CGCGTTGGATGGATCGCC 61.640 66.667 0.00 0.00 44.73 5.54
3279 10083 3.279875 GCGTTGGATGGATCGCCC 61.280 66.667 0.00 0.00 42.33 6.13
3280 10084 2.505982 CGTTGGATGGATCGCCCT 59.494 61.111 0.00 0.00 35.38 5.19
3281 10085 1.153168 CGTTGGATGGATCGCCCTT 60.153 57.895 0.00 0.00 35.38 3.95
3282 10086 0.105964 CGTTGGATGGATCGCCCTTA 59.894 55.000 0.00 0.00 35.38 2.69
3283 10087 1.474320 CGTTGGATGGATCGCCCTTAA 60.474 52.381 0.00 0.00 35.38 1.85
3284 10088 2.810400 CGTTGGATGGATCGCCCTTAAT 60.810 50.000 0.00 0.00 35.38 1.40
3285 10089 3.222603 GTTGGATGGATCGCCCTTAATT 58.777 45.455 0.00 0.00 35.38 1.40
3286 10090 3.593442 TGGATGGATCGCCCTTAATTT 57.407 42.857 0.00 0.00 35.38 1.82
3287 10091 3.486383 TGGATGGATCGCCCTTAATTTC 58.514 45.455 0.00 0.00 35.38 2.17
3288 10092 3.138283 TGGATGGATCGCCCTTAATTTCT 59.862 43.478 0.00 0.00 35.38 2.52
3289 10093 4.349636 TGGATGGATCGCCCTTAATTTCTA 59.650 41.667 0.00 0.00 35.38 2.10
3290 10094 4.938226 GGATGGATCGCCCTTAATTTCTAG 59.062 45.833 0.00 0.00 35.38 2.43
3291 10095 5.513267 GGATGGATCGCCCTTAATTTCTAGT 60.513 44.000 0.00 0.00 35.38 2.57
3292 10096 6.295688 GGATGGATCGCCCTTAATTTCTAGTA 60.296 42.308 0.00 0.00 35.38 1.82
3293 10097 5.850614 TGGATCGCCCTTAATTTCTAGTAC 58.149 41.667 0.00 0.00 35.38 2.73
3294 10098 5.601313 TGGATCGCCCTTAATTTCTAGTACT 59.399 40.000 0.00 0.00 35.38 2.73
3295 10099 6.779049 TGGATCGCCCTTAATTTCTAGTACTA 59.221 38.462 1.89 1.89 35.38 1.82
3296 10100 7.453752 TGGATCGCCCTTAATTTCTAGTACTAT 59.546 37.037 2.33 0.00 35.38 2.12
3297 10101 7.975058 GGATCGCCCTTAATTTCTAGTACTATC 59.025 40.741 2.33 0.00 0.00 2.08
3298 10102 6.906659 TCGCCCTTAATTTCTAGTACTATCG 58.093 40.000 2.33 0.00 0.00 2.92
3299 10103 6.712095 TCGCCCTTAATTTCTAGTACTATCGA 59.288 38.462 2.33 0.00 0.00 3.59
3300 10104 7.022384 CGCCCTTAATTTCTAGTACTATCGAG 58.978 42.308 2.33 0.00 0.00 4.04
3301 10105 7.308469 CGCCCTTAATTTCTAGTACTATCGAGT 60.308 40.741 2.33 0.00 39.92 4.18
3302 10106 9.007901 GCCCTTAATTTCTAGTACTATCGAGTA 57.992 37.037 2.33 0.00 37.10 2.59
3315 10119 9.999660 AGTACTATCGAGTATCAGTTATCAAGA 57.000 33.333 0.00 0.00 40.32 3.02
3321 10125 8.858003 TCGAGTATCAGTTATCAAGATTGAAC 57.142 34.615 0.00 0.00 36.33 3.18
3322 10126 7.921214 TCGAGTATCAGTTATCAAGATTGAACC 59.079 37.037 0.00 0.00 36.33 3.62
3323 10127 7.706607 CGAGTATCAGTTATCAAGATTGAACCA 59.293 37.037 0.00 0.00 36.33 3.67
3324 10128 9.383519 GAGTATCAGTTATCAAGATTGAACCAA 57.616 33.333 0.00 0.00 36.33 3.67
3325 10129 9.911788 AGTATCAGTTATCAAGATTGAACCAAT 57.088 29.630 0.00 0.00 41.13 3.16
3339 10143 5.823209 TGAACCAATCAATCATACTGCAG 57.177 39.130 13.48 13.48 34.30 4.41
3340 10144 5.499313 TGAACCAATCAATCATACTGCAGA 58.501 37.500 23.35 4.31 34.30 4.26
3341 10145 6.124340 TGAACCAATCAATCATACTGCAGAT 58.876 36.000 23.35 6.78 34.30 2.90
3342 10146 6.038936 TGAACCAATCAATCATACTGCAGATG 59.961 38.462 23.35 18.59 34.30 2.90
3343 10147 4.825634 ACCAATCAATCATACTGCAGATGG 59.174 41.667 23.35 13.34 0.00 3.51
3344 10148 5.067954 CCAATCAATCATACTGCAGATGGA 58.932 41.667 23.35 14.17 0.00 3.41
3345 10149 5.710567 CCAATCAATCATACTGCAGATGGAT 59.289 40.000 23.35 15.82 36.67 3.41
3346 10150 6.882678 CCAATCAATCATACTGCAGATGGATA 59.117 38.462 23.35 1.40 34.58 2.59
3347 10151 7.065923 CCAATCAATCATACTGCAGATGGATAG 59.934 40.741 23.35 5.41 34.58 2.08
3348 10152 6.046290 TCAATCATACTGCAGATGGATAGG 57.954 41.667 23.35 13.90 0.00 2.57
3349 10153 5.781818 TCAATCATACTGCAGATGGATAGGA 59.218 40.000 23.35 9.45 0.00 2.94
3350 10154 5.674052 ATCATACTGCAGATGGATAGGAC 57.326 43.478 23.35 0.00 0.00 3.85
3351 10155 4.745351 TCATACTGCAGATGGATAGGACT 58.255 43.478 23.35 0.00 0.00 3.85
3352 10156 4.525874 TCATACTGCAGATGGATAGGACTG 59.474 45.833 23.35 0.00 0.00 3.51
3354 10158 3.207677 GCAGATGGATAGGACTGCG 57.792 57.895 0.00 0.00 44.27 5.18
3355 10159 0.676184 GCAGATGGATAGGACTGCGA 59.324 55.000 0.00 0.00 44.27 5.10
3356 10160 1.274728 GCAGATGGATAGGACTGCGAT 59.725 52.381 0.00 0.00 44.27 4.58
3357 10161 2.673610 GCAGATGGATAGGACTGCGATC 60.674 54.545 0.00 0.00 44.27 3.69
3358 10162 2.094286 CAGATGGATAGGACTGCGATCC 60.094 54.545 3.10 3.10 39.77 3.36
3360 10164 1.621992 TGGATAGGACTGCGATCCTC 58.378 55.000 11.68 0.00 46.92 3.71
3361 10165 0.523966 GGATAGGACTGCGATCCTCG 59.476 60.000 11.68 0.00 46.92 4.63
3362 10166 0.523966 GATAGGACTGCGATCCTCGG 59.476 60.000 11.68 0.00 46.92 4.63
3363 10167 1.528292 ATAGGACTGCGATCCTCGGC 61.528 60.000 11.68 0.00 46.92 5.54
3364 10168 4.933064 GGACTGCGATCCTCGGCG 62.933 72.222 0.00 0.00 40.84 6.46
3365 10169 3.889044 GACTGCGATCCTCGGCGA 61.889 66.667 10.14 10.14 40.84 5.54
3366 10170 4.194720 ACTGCGATCCTCGGCGAC 62.195 66.667 4.99 0.00 40.84 5.19
3367 10171 4.193334 CTGCGATCCTCGGCGACA 62.193 66.667 4.99 0.00 40.84 4.35
3368 10172 4.492160 TGCGATCCTCGGCGACAC 62.492 66.667 4.99 0.00 40.84 3.67
3370 10174 3.822192 CGATCCTCGGCGACACCA 61.822 66.667 4.99 0.00 39.03 4.17
3371 10175 2.815308 GATCCTCGGCGACACCAT 59.185 61.111 4.99 0.00 39.03 3.55
3372 10176 1.792118 CGATCCTCGGCGACACCATA 61.792 60.000 4.99 0.00 39.03 2.74
3373 10177 0.039074 GATCCTCGGCGACACCATAG 60.039 60.000 4.99 0.00 39.03 2.23
3374 10178 0.467474 ATCCTCGGCGACACCATAGA 60.467 55.000 4.99 0.00 39.03 1.98
3375 10179 1.065928 CCTCGGCGACACCATAGAC 59.934 63.158 4.99 0.00 39.03 2.59
3376 10180 1.384989 CCTCGGCGACACCATAGACT 61.385 60.000 4.99 0.00 39.03 3.24
3377 10181 1.306148 CTCGGCGACACCATAGACTA 58.694 55.000 4.99 0.00 39.03 2.59
3378 10182 1.002684 CTCGGCGACACCATAGACTAC 60.003 57.143 4.99 0.00 39.03 2.73
3379 10183 0.316772 CGGCGACACCATAGACTACG 60.317 60.000 0.00 0.00 39.03 3.51
3380 10184 0.737219 GGCGACACCATAGACTACGT 59.263 55.000 0.00 0.00 38.86 3.57
3381 10185 1.533338 GGCGACACCATAGACTACGTG 60.533 57.143 0.00 9.12 38.86 4.49
3382 10186 1.399440 GCGACACCATAGACTACGTGA 59.601 52.381 15.25 0.00 0.00 4.35
3383 10187 2.159476 GCGACACCATAGACTACGTGAA 60.159 50.000 15.25 0.00 0.00 3.18
3384 10188 3.681855 CGACACCATAGACTACGTGAAG 58.318 50.000 15.25 0.00 0.00 3.02
3385 10189 3.487042 CGACACCATAGACTACGTGAAGG 60.487 52.174 15.25 0.00 0.00 3.46
3386 10190 3.693085 GACACCATAGACTACGTGAAGGA 59.307 47.826 15.25 0.00 0.00 3.36
3387 10191 3.695060 ACACCATAGACTACGTGAAGGAG 59.305 47.826 15.25 0.00 36.66 3.69
3388 10192 2.688958 ACCATAGACTACGTGAAGGAGC 59.311 50.000 0.00 0.00 32.63 4.70
3389 10193 2.952978 CCATAGACTACGTGAAGGAGCT 59.047 50.000 0.00 0.00 32.63 4.09
3390 10194 4.135306 CCATAGACTACGTGAAGGAGCTA 58.865 47.826 0.00 0.00 32.63 3.32
3391 10195 4.579340 CCATAGACTACGTGAAGGAGCTAA 59.421 45.833 0.00 0.00 32.63 3.09
3392 10196 5.505985 CCATAGACTACGTGAAGGAGCTAAC 60.506 48.000 0.00 0.00 32.63 2.34
3393 10197 2.419324 AGACTACGTGAAGGAGCTAACG 59.581 50.000 0.00 0.00 41.64 3.18
3394 10198 1.471684 ACTACGTGAAGGAGCTAACGG 59.528 52.381 0.00 0.00 40.25 4.44
3395 10199 1.741706 CTACGTGAAGGAGCTAACGGA 59.258 52.381 0.00 1.61 40.25 4.69
3396 10200 0.526662 ACGTGAAGGAGCTAACGGAG 59.473 55.000 9.29 0.00 40.25 4.63
3404 10208 4.827481 GCTAACGGAGCGGATCAA 57.173 55.556 0.00 0.00 42.62 2.57
3405 10209 3.059603 GCTAACGGAGCGGATCAAA 57.940 52.632 0.00 0.00 42.62 2.69
3406 10210 1.365699 GCTAACGGAGCGGATCAAAA 58.634 50.000 0.00 0.00 42.62 2.44
3407 10211 1.062148 GCTAACGGAGCGGATCAAAAC 59.938 52.381 0.00 0.00 42.62 2.43
3408 10212 1.664151 CTAACGGAGCGGATCAAAACC 59.336 52.381 0.00 0.00 0.00 3.27
3409 10213 0.958876 AACGGAGCGGATCAAAACCC 60.959 55.000 0.00 0.00 0.00 4.11
3410 10214 1.078426 CGGAGCGGATCAAAACCCT 60.078 57.895 0.00 0.00 0.00 4.34
3411 10215 1.090052 CGGAGCGGATCAAAACCCTC 61.090 60.000 0.00 0.00 0.00 4.30
3412 10216 1.090052 GGAGCGGATCAAAACCCTCG 61.090 60.000 0.00 0.00 0.00 4.63
3413 10217 0.108329 GAGCGGATCAAAACCCTCGA 60.108 55.000 0.00 0.00 0.00 4.04
3414 10218 0.108138 AGCGGATCAAAACCCTCGAG 60.108 55.000 5.13 5.13 0.00 4.04
3415 10219 1.090052 GCGGATCAAAACCCTCGAGG 61.090 60.000 25.36 25.36 43.78 4.63
3416 10220 0.535335 CGGATCAAAACCCTCGAGGA 59.465 55.000 33.39 12.22 39.89 3.71
3417 10221 1.739371 CGGATCAAAACCCTCGAGGAC 60.739 57.143 33.39 12.02 39.89 3.85
3418 10222 1.641577 GATCAAAACCCTCGAGGACG 58.358 55.000 33.39 19.21 39.89 4.79
3419 10223 1.203994 GATCAAAACCCTCGAGGACGA 59.796 52.381 33.39 19.57 46.56 4.20
3427 10231 2.125229 TCGAGGACGAGACCGGAG 60.125 66.667 9.46 0.00 43.81 4.63
3428 10232 3.878519 CGAGGACGAGACCGGAGC 61.879 72.222 9.46 0.00 42.66 4.70
3429 10233 3.519930 GAGGACGAGACCGGAGCC 61.520 72.222 9.46 0.00 40.78 4.70
3430 10234 4.361971 AGGACGAGACCGGAGCCA 62.362 66.667 9.46 0.00 40.78 4.75
3431 10235 4.131088 GGACGAGACCGGAGCCAC 62.131 72.222 9.46 0.00 40.78 5.01
3432 10236 4.477975 GACGAGACCGGAGCCACG 62.478 72.222 9.46 9.92 40.78 4.94
3441 10245 4.821589 GGAGCCACGCCGGAAGAG 62.822 72.222 5.05 0.00 36.56 2.85
3445 10249 4.069232 CCACGCCGGAAGAGCTGA 62.069 66.667 5.05 0.00 36.56 4.26
3446 10250 2.048222 CACGCCGGAAGAGCTGAA 60.048 61.111 5.05 0.00 0.00 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 4.408921 TGTAGGATCGATTTCCCACTGAAT 59.591 41.667 0.00 0.00 36.35 2.57
445 460 0.675522 GGAAACCTTCGGATCGGCAA 60.676 55.000 0.00 0.00 0.00 4.52
457 472 1.763770 CCTGGCTCACTGGAAACCT 59.236 57.895 0.00 0.00 40.42 3.50
524 539 1.695114 AAAGGCCTGTTTGGTTGCCC 61.695 55.000 5.69 0.00 45.14 5.36
525 540 0.249868 GAAAGGCCTGTTTGGTTGCC 60.250 55.000 5.69 0.00 44.35 4.52
526 541 0.249868 GGAAAGGCCTGTTTGGTTGC 60.250 55.000 5.69 0.00 38.35 4.17
527 542 3.986970 GGAAAGGCCTGTTTGGTTG 57.013 52.632 5.69 0.00 38.35 3.77
537 552 3.440415 CGCGGGAAAGGAAAGGCC 61.440 66.667 0.00 0.00 0.00 5.19
538 553 4.116328 GCGCGGGAAAGGAAAGGC 62.116 66.667 8.83 0.00 0.00 4.35
539 554 3.799755 CGCGCGGGAAAGGAAAGG 61.800 66.667 24.84 0.00 0.00 3.11
540 555 3.799755 CCGCGCGGGAAAGGAAAG 61.800 66.667 40.50 11.24 38.47 2.62
570 585 4.877619 TTTGGTTGCCCGCACCGA 62.878 61.111 0.00 0.00 0.00 4.69
571 586 4.639171 GTTTGGTTGCCCGCACCG 62.639 66.667 0.00 0.00 0.00 4.94
572 587 3.532155 TGTTTGGTTGCCCGCACC 61.532 61.111 0.00 0.00 0.00 5.01
573 588 2.279186 GTGTTTGGTTGCCCGCAC 60.279 61.111 0.00 0.00 0.00 5.34
574 589 3.893763 CGTGTTTGGTTGCCCGCA 61.894 61.111 0.00 0.00 0.00 5.69
576 591 4.639171 GGCGTGTTTGGTTGCCCG 62.639 66.667 0.00 0.00 41.70 6.13
578 593 2.579684 TTTGGGCGTGTTTGGTTGCC 62.580 55.000 0.00 0.00 46.82 4.52
579 594 0.741221 TTTTGGGCGTGTTTGGTTGC 60.741 50.000 0.00 0.00 0.00 4.17
580 595 1.946745 ATTTTGGGCGTGTTTGGTTG 58.053 45.000 0.00 0.00 0.00 3.77
581 596 3.133183 AGTTATTTTGGGCGTGTTTGGTT 59.867 39.130 0.00 0.00 0.00 3.67
582 597 2.696187 AGTTATTTTGGGCGTGTTTGGT 59.304 40.909 0.00 0.00 0.00 3.67
583 598 3.056304 CAGTTATTTTGGGCGTGTTTGG 58.944 45.455 0.00 0.00 0.00 3.28
584 599 2.474735 GCAGTTATTTTGGGCGTGTTTG 59.525 45.455 0.00 0.00 0.00 2.93
585 600 2.101582 TGCAGTTATTTTGGGCGTGTTT 59.898 40.909 0.00 0.00 0.00 2.83
586 601 1.683917 TGCAGTTATTTTGGGCGTGTT 59.316 42.857 0.00 0.00 0.00 3.32
587 602 1.269448 CTGCAGTTATTTTGGGCGTGT 59.731 47.619 5.25 0.00 0.00 4.49
588 603 1.402720 CCTGCAGTTATTTTGGGCGTG 60.403 52.381 13.81 0.00 0.00 5.34
589 604 0.887933 CCTGCAGTTATTTTGGGCGT 59.112 50.000 13.81 0.00 0.00 5.68
590 605 1.173043 TCCTGCAGTTATTTTGGGCG 58.827 50.000 13.81 0.00 0.00 6.13
591 606 3.243535 GCTATCCTGCAGTTATTTTGGGC 60.244 47.826 13.81 0.88 0.00 5.36
592 607 4.210331 AGCTATCCTGCAGTTATTTTGGG 58.790 43.478 13.81 0.00 34.99 4.12
593 608 5.504665 CGAAGCTATCCTGCAGTTATTTTGG 60.505 44.000 13.81 0.00 34.99 3.28
594 609 5.505286 CGAAGCTATCCTGCAGTTATTTTG 58.495 41.667 13.81 0.00 34.99 2.44
644 660 3.058160 GTCACGGCTGGCTGCATT 61.058 61.111 18.32 0.84 45.15 3.56
669 685 5.724328 CATCAACTGGCTAGTTACTCTTGA 58.276 41.667 15.73 8.74 45.12 3.02
697 714 2.496899 ACCCAAGCGACAATCATTCT 57.503 45.000 0.00 0.00 0.00 2.40
769 790 3.009115 GCAGTGTAGGGCTGGGGA 61.009 66.667 0.00 0.00 34.73 4.81
873 909 2.500714 CCCAACTGCAAGCAAGGCA 61.501 57.895 0.00 0.00 37.60 4.75
920 966 3.852578 TCCCTTAATTTCTCTCCCAGCTT 59.147 43.478 0.00 0.00 0.00 3.74
996 1061 0.302890 CGTCAAGCTGATCCATTCGC 59.697 55.000 0.00 0.00 0.00 4.70
997 1062 1.857217 CTCGTCAAGCTGATCCATTCG 59.143 52.381 0.00 0.00 0.00 3.34
1101 6362 2.580470 CGTCGTCATCATGCCGCTC 61.580 63.158 0.00 0.00 0.00 5.03
1242 6506 2.229302 GAGGCAGTCGAAGTTGTACTCT 59.771 50.000 0.00 0.00 0.00 3.24
1247 6511 0.601311 GCTGAGGCAGTCGAAGTTGT 60.601 55.000 0.00 0.00 38.54 3.32
1388 6664 1.089920 GTGATGCAGGTTGCCACTAG 58.910 55.000 0.00 0.00 44.23 2.57
1390 6666 1.968017 CGTGATGCAGGTTGCCACT 60.968 57.895 0.00 0.00 44.23 4.00
1392 6668 2.672651 CCGTGATGCAGGTTGCCA 60.673 61.111 0.00 0.00 44.23 4.92
1469 6748 1.118356 GCCCCTGATCATCTCCGAGT 61.118 60.000 0.00 0.00 0.00 4.18
1504 6786 2.607187 GTTGAGCTTGCTTCTAGCGTA 58.393 47.619 0.00 0.00 46.26 4.42
1609 6891 2.042979 ACACCTTGGTAATCTTGGGCAT 59.957 45.455 0.00 0.00 0.00 4.40
1857 7195 2.914908 GCCGATCTCCTCCTCGAGC 61.915 68.421 6.99 0.00 37.05 5.03
1938 7276 2.038295 GGAATTCCTCATCGGCATCTCT 59.962 50.000 17.73 0.00 0.00 3.10
2117 8312 3.685214 CTCTAGCGCGCTCACCGTT 62.685 63.158 40.23 15.35 39.71 4.44
2137 8726 1.460305 TCTATCTCCAGCCCCAGCC 60.460 63.158 0.00 0.00 41.25 4.85
2153 8742 2.256764 CTGACGACGCACTGCTCT 59.743 61.111 0.00 0.00 0.00 4.09
2250 8852 6.102897 TCGGCCAAGAAATTAATGGAAAAA 57.897 33.333 2.24 0.00 36.27 1.94
2376 8989 1.409064 TCTCGTCTGTGCTTGTCACTT 59.591 47.619 0.00 0.00 45.81 3.16
2389 9002 0.829333 ATGCCTGCTTGATCTCGTCT 59.171 50.000 0.00 0.00 0.00 4.18
2422 9035 0.474614 GGAACCTTCCTCCATAGCCC 59.525 60.000 0.00 0.00 44.11 5.19
2439 9052 1.725557 GGCGTGCTCGATCTACAGGA 61.726 60.000 13.13 0.00 39.71 3.86
2440 9053 1.299468 GGCGTGCTCGATCTACAGG 60.299 63.158 13.13 0.00 39.71 4.00
2630 9407 7.307396 CCAACTATTACAATCTGGTCATAAGCG 60.307 40.741 0.00 0.00 0.00 4.68
2635 9412 6.122277 CACCCAACTATTACAATCTGGTCAT 58.878 40.000 0.00 0.00 0.00 3.06
2663 9440 4.371786 ACATATGCATTACACTCACGGAG 58.628 43.478 3.54 0.03 35.52 4.63
2926 9728 2.235402 GGAAGGAATCAACGGACCACTA 59.765 50.000 0.00 0.00 0.00 2.74
2999 9803 7.517320 ACCCAATATATGTGCAAGTCAGAATA 58.483 34.615 0.00 0.00 0.00 1.75
3061 9865 2.495551 GCGCGCGAATTAGCATCG 60.496 61.111 37.18 13.18 42.99 3.84
3095 9899 1.228533 TAAACGGCTTGTCGGAAACC 58.771 50.000 0.00 0.00 0.00 3.27
3096 9900 3.038017 GTTTAAACGGCTTGTCGGAAAC 58.962 45.455 1.89 3.47 0.00 2.78
3097 9901 2.033174 GGTTTAAACGGCTTGTCGGAAA 59.967 45.455 12.07 0.00 0.00 3.13
3098 9902 1.603326 GGTTTAAACGGCTTGTCGGAA 59.397 47.619 12.07 0.00 0.00 4.30
3099 9903 1.202675 AGGTTTAAACGGCTTGTCGGA 60.203 47.619 12.07 0.00 0.00 4.55
3100 9904 1.069500 CAGGTTTAAACGGCTTGTCGG 60.069 52.381 12.07 0.00 0.00 4.79
3101 9905 1.868498 TCAGGTTTAAACGGCTTGTCG 59.132 47.619 12.07 0.00 0.00 4.35
3102 9906 4.499037 AATCAGGTTTAAACGGCTTGTC 57.501 40.909 12.07 0.00 0.00 3.18
3103 9907 4.457949 CCTAATCAGGTTTAAACGGCTTGT 59.542 41.667 12.07 0.00 37.15 3.16
3104 9908 4.698304 TCCTAATCAGGTTTAAACGGCTTG 59.302 41.667 12.07 8.01 43.18 4.01
3105 9909 4.913784 TCCTAATCAGGTTTAAACGGCTT 58.086 39.130 12.07 7.42 43.18 4.35
3106 9910 4.563140 TCCTAATCAGGTTTAAACGGCT 57.437 40.909 12.07 2.00 43.18 5.52
3107 9911 5.182570 ACTTTCCTAATCAGGTTTAAACGGC 59.817 40.000 12.07 0.00 43.18 5.68
3108 9912 6.608610 CACTTTCCTAATCAGGTTTAAACGG 58.391 40.000 12.07 7.20 43.18 4.44
3109 9913 6.084277 GCACTTTCCTAATCAGGTTTAAACG 58.916 40.000 12.07 0.00 43.18 3.60
3110 9914 6.977213 TGCACTTTCCTAATCAGGTTTAAAC 58.023 36.000 9.98 9.98 43.18 2.01
3111 9915 7.775053 ATGCACTTTCCTAATCAGGTTTAAA 57.225 32.000 0.00 0.00 43.18 1.52
3112 9916 7.775053 AATGCACTTTCCTAATCAGGTTTAA 57.225 32.000 0.00 0.00 43.18 1.52
3113 9917 7.775053 AAATGCACTTTCCTAATCAGGTTTA 57.225 32.000 0.00 0.00 43.18 2.01
3114 9918 6.670695 AAATGCACTTTCCTAATCAGGTTT 57.329 33.333 0.00 0.00 43.18 3.27
3115 9919 6.670695 AAAATGCACTTTCCTAATCAGGTT 57.329 33.333 0.00 0.00 43.18 3.50
3116 9920 6.127619 GCTAAAATGCACTTTCCTAATCAGGT 60.128 38.462 0.00 0.00 43.18 4.00
3117 9921 6.127647 TGCTAAAATGCACTTTCCTAATCAGG 60.128 38.462 0.00 0.00 39.63 3.86
3118 9922 6.855836 TGCTAAAATGCACTTTCCTAATCAG 58.144 36.000 0.00 0.00 38.12 2.90
3119 9923 6.832520 TGCTAAAATGCACTTTCCTAATCA 57.167 33.333 0.00 0.00 38.12 2.57
3120 9924 9.801873 TTAATGCTAAAATGCACTTTCCTAATC 57.198 29.630 0.00 0.00 46.33 1.75
3123 9927 9.585099 CAATTAATGCTAAAATGCACTTTCCTA 57.415 29.630 0.00 0.00 46.33 2.94
3124 9928 8.313292 TCAATTAATGCTAAAATGCACTTTCCT 58.687 29.630 0.00 0.00 46.33 3.36
3125 9929 8.477984 TCAATTAATGCTAAAATGCACTTTCC 57.522 30.769 0.00 0.00 46.33 3.13
3126 9930 9.962759 CTTCAATTAATGCTAAAATGCACTTTC 57.037 29.630 0.00 0.00 46.33 2.62
3127 9931 8.938906 CCTTCAATTAATGCTAAAATGCACTTT 58.061 29.630 0.00 0.00 46.33 2.66
3128 9932 8.313292 TCCTTCAATTAATGCTAAAATGCACTT 58.687 29.630 0.00 0.00 46.33 3.16
3129 9933 7.839907 TCCTTCAATTAATGCTAAAATGCACT 58.160 30.769 0.00 0.00 46.33 4.40
3130 9934 8.652810 ATCCTTCAATTAATGCTAAAATGCAC 57.347 30.769 0.00 0.00 46.33 4.57
3132 9936 9.925268 CAAATCCTTCAATTAATGCTAAAATGC 57.075 29.630 0.00 0.00 0.00 3.56
3135 9939 9.874205 CCTCAAATCCTTCAATTAATGCTAAAA 57.126 29.630 0.00 0.00 0.00 1.52
3136 9940 9.253832 TCCTCAAATCCTTCAATTAATGCTAAA 57.746 29.630 0.00 0.00 0.00 1.85
3137 9941 8.686334 GTCCTCAAATCCTTCAATTAATGCTAA 58.314 33.333 0.00 0.00 0.00 3.09
3138 9942 8.055181 AGTCCTCAAATCCTTCAATTAATGCTA 58.945 33.333 0.00 0.00 0.00 3.49
3139 9943 6.894103 AGTCCTCAAATCCTTCAATTAATGCT 59.106 34.615 0.00 0.00 0.00 3.79
3140 9944 7.105241 AGTCCTCAAATCCTTCAATTAATGC 57.895 36.000 0.00 0.00 0.00 3.56
3147 9951 9.618890 CATCTAATTAGTCCTCAAATCCTTCAA 57.381 33.333 12.19 0.00 0.00 2.69
3148 9952 8.213679 CCATCTAATTAGTCCTCAAATCCTTCA 58.786 37.037 12.19 0.00 0.00 3.02
3149 9953 7.663493 CCCATCTAATTAGTCCTCAAATCCTTC 59.337 40.741 12.19 0.00 0.00 3.46
3150 9954 7.521669 CCCATCTAATTAGTCCTCAAATCCTT 58.478 38.462 12.19 0.00 0.00 3.36
3151 9955 6.466470 GCCCATCTAATTAGTCCTCAAATCCT 60.466 42.308 12.19 0.00 0.00 3.24
3152 9956 5.707764 GCCCATCTAATTAGTCCTCAAATCC 59.292 44.000 12.19 0.00 0.00 3.01
3153 9957 5.707764 GGCCCATCTAATTAGTCCTCAAATC 59.292 44.000 12.19 0.00 0.00 2.17
3154 9958 5.373854 AGGCCCATCTAATTAGTCCTCAAAT 59.626 40.000 12.19 0.00 0.00 2.32
3155 9959 4.726825 AGGCCCATCTAATTAGTCCTCAAA 59.273 41.667 12.19 0.00 0.00 2.69
3156 9960 4.307259 AGGCCCATCTAATTAGTCCTCAA 58.693 43.478 12.19 0.00 0.00 3.02
3157 9961 3.941629 AGGCCCATCTAATTAGTCCTCA 58.058 45.455 12.19 0.00 0.00 3.86
3158 9962 5.046950 CACTAGGCCCATCTAATTAGTCCTC 60.047 48.000 12.19 0.40 0.00 3.71
3159 9963 4.841246 CACTAGGCCCATCTAATTAGTCCT 59.159 45.833 12.19 12.85 0.00 3.85
3160 9964 4.838986 TCACTAGGCCCATCTAATTAGTCC 59.161 45.833 12.19 7.20 0.00 3.85
3161 9965 5.304614 TGTCACTAGGCCCATCTAATTAGTC 59.695 44.000 12.19 0.00 0.00 2.59
3162 9966 5.216622 TGTCACTAGGCCCATCTAATTAGT 58.783 41.667 12.19 0.00 0.00 2.24
3163 9967 5.808366 TGTCACTAGGCCCATCTAATTAG 57.192 43.478 6.11 6.11 0.00 1.73
3164 9968 5.513094 GCATGTCACTAGGCCCATCTAATTA 60.513 44.000 0.00 0.00 0.00 1.40
3165 9969 4.747931 GCATGTCACTAGGCCCATCTAATT 60.748 45.833 0.00 0.00 0.00 1.40
3166 9970 3.244700 GCATGTCACTAGGCCCATCTAAT 60.245 47.826 0.00 0.00 0.00 1.73
3167 9971 2.104792 GCATGTCACTAGGCCCATCTAA 59.895 50.000 0.00 0.00 0.00 2.10
3168 9972 1.694150 GCATGTCACTAGGCCCATCTA 59.306 52.381 0.00 0.00 0.00 1.98
3169 9973 0.471617 GCATGTCACTAGGCCCATCT 59.528 55.000 0.00 0.00 0.00 2.90
3170 9974 0.181114 TGCATGTCACTAGGCCCATC 59.819 55.000 0.00 0.00 0.00 3.51
3171 9975 0.848735 ATGCATGTCACTAGGCCCAT 59.151 50.000 0.00 0.00 0.00 4.00
3172 9976 0.107066 CATGCATGTCACTAGGCCCA 60.107 55.000 18.91 0.00 0.00 5.36
3173 9977 0.107017 ACATGCATGTCACTAGGCCC 60.107 55.000 26.61 0.00 35.87 5.80
3174 9978 1.019673 CACATGCATGTCACTAGGCC 58.980 55.000 29.23 0.00 39.39 5.19
3175 9979 1.742761 ACACATGCATGTCACTAGGC 58.257 50.000 29.23 0.00 39.39 3.93
3176 9980 2.421073 CCAACACATGCATGTCACTAGG 59.579 50.000 29.23 20.70 39.39 3.02
3177 9981 3.337358 TCCAACACATGCATGTCACTAG 58.663 45.455 29.23 19.41 39.39 2.57
3178 9982 3.415457 TCCAACACATGCATGTCACTA 57.585 42.857 29.23 11.33 39.39 2.74
3179 9983 2.275134 TCCAACACATGCATGTCACT 57.725 45.000 29.23 13.60 39.39 3.41
3180 9984 2.416296 CCATCCAACACATGCATGTCAC 60.416 50.000 29.23 0.00 39.39 3.67
3181 9985 1.819903 CCATCCAACACATGCATGTCA 59.180 47.619 29.23 11.31 39.39 3.58
3182 9986 2.093890 TCCATCCAACACATGCATGTC 58.906 47.619 29.23 0.00 39.39 3.06
3183 9987 2.219080 TCCATCCAACACATGCATGT 57.781 45.000 26.61 26.61 42.84 3.21
3184 9988 2.287368 CGATCCATCCAACACATGCATG 60.287 50.000 25.09 25.09 0.00 4.06
3185 9989 1.951602 CGATCCATCCAACACATGCAT 59.048 47.619 0.00 0.00 0.00 3.96
3186 9990 1.381522 CGATCCATCCAACACATGCA 58.618 50.000 0.00 0.00 0.00 3.96
3187 9991 0.029834 GCGATCCATCCAACACATGC 59.970 55.000 0.00 0.00 0.00 4.06
3188 9992 1.064505 GTGCGATCCATCCAACACATG 59.935 52.381 0.00 0.00 0.00 3.21
3189 9993 1.382522 GTGCGATCCATCCAACACAT 58.617 50.000 0.00 0.00 0.00 3.21
3190 9994 1.018752 CGTGCGATCCATCCAACACA 61.019 55.000 0.00 0.00 0.00 3.72
3191 9995 0.739462 TCGTGCGATCCATCCAACAC 60.739 55.000 0.00 0.00 0.00 3.32
3192 9996 0.739462 GTCGTGCGATCCATCCAACA 60.739 55.000 0.00 0.00 0.00 3.33
3193 9997 1.429148 GGTCGTGCGATCCATCCAAC 61.429 60.000 0.00 0.00 0.00 3.77
3194 9998 1.153449 GGTCGTGCGATCCATCCAA 60.153 57.895 0.00 0.00 0.00 3.53
3195 9999 2.016393 GAGGTCGTGCGATCCATCCA 62.016 60.000 0.83 0.00 0.00 3.41
3196 10000 1.300233 GAGGTCGTGCGATCCATCC 60.300 63.158 0.83 0.00 0.00 3.51
3197 10001 1.300233 GGAGGTCGTGCGATCCATC 60.300 63.158 8.77 0.20 0.00 3.51
3198 10002 1.330655 AAGGAGGTCGTGCGATCCAT 61.331 55.000 14.27 2.51 34.08 3.41
3199 10003 1.945354 GAAGGAGGTCGTGCGATCCA 61.945 60.000 14.27 0.00 34.08 3.41
3200 10004 1.227002 GAAGGAGGTCGTGCGATCC 60.227 63.158 0.83 3.88 0.00 3.36
3201 10005 0.802607 GTGAAGGAGGTCGTGCGATC 60.803 60.000 0.00 0.00 0.00 3.69
3202 10006 1.215647 GTGAAGGAGGTCGTGCGAT 59.784 57.895 0.00 0.00 0.00 4.58
3203 10007 2.649034 GTGAAGGAGGTCGTGCGA 59.351 61.111 0.00 0.00 0.00 5.10
3204 10008 2.805353 CGTGAAGGAGGTCGTGCG 60.805 66.667 0.00 0.00 0.00 5.34
3205 10009 3.112709 GCGTGAAGGAGGTCGTGC 61.113 66.667 0.00 0.00 0.00 5.34
3206 10010 2.805353 CGCGTGAAGGAGGTCGTG 60.805 66.667 0.00 0.00 0.00 4.35
3207 10011 4.052229 CCGCGTGAAGGAGGTCGT 62.052 66.667 4.92 0.00 0.00 4.34
3208 10012 4.052229 ACCGCGTGAAGGAGGTCG 62.052 66.667 4.92 0.00 34.87 4.79
3209 10013 2.432628 CACCGCGTGAAGGAGGTC 60.433 66.667 4.92 0.00 38.08 3.85
3210 10014 4.003788 CCACCGCGTGAAGGAGGT 62.004 66.667 4.92 0.00 41.04 3.85
3211 10015 4.760047 CCCACCGCGTGAAGGAGG 62.760 72.222 4.92 0.00 38.93 4.30
3222 10026 2.132089 TTTACCCTTGAGGCCCACCG 62.132 60.000 0.00 0.00 42.76 4.94
3223 10027 0.113580 TTTTACCCTTGAGGCCCACC 59.886 55.000 0.00 0.00 40.58 4.61
3224 10028 1.203013 AGTTTTACCCTTGAGGCCCAC 60.203 52.381 0.00 0.00 40.58 4.61
3225 10029 1.154430 AGTTTTACCCTTGAGGCCCA 58.846 50.000 0.00 0.00 40.58 5.36
3226 10030 1.893137 CAAGTTTTACCCTTGAGGCCC 59.107 52.381 0.00 0.00 41.44 5.80
3227 10031 2.557056 GACAAGTTTTACCCTTGAGGCC 59.443 50.000 0.00 0.00 41.44 5.19
3228 10032 2.225727 CGACAAGTTTTACCCTTGAGGC 59.774 50.000 7.11 0.00 41.44 4.70
3229 10033 2.812011 CCGACAAGTTTTACCCTTGAGG 59.188 50.000 7.11 6.21 41.44 3.86
3230 10034 2.225727 GCCGACAAGTTTTACCCTTGAG 59.774 50.000 7.11 1.54 41.44 3.02
3231 10035 2.158726 AGCCGACAAGTTTTACCCTTGA 60.159 45.455 7.11 0.00 41.44 3.02
3232 10036 2.031157 CAGCCGACAAGTTTTACCCTTG 60.031 50.000 0.00 0.00 43.87 3.61
3233 10037 2.158726 TCAGCCGACAAGTTTTACCCTT 60.159 45.455 0.00 0.00 0.00 3.95
3234 10038 1.418637 TCAGCCGACAAGTTTTACCCT 59.581 47.619 0.00 0.00 0.00 4.34
3235 10039 1.886886 TCAGCCGACAAGTTTTACCC 58.113 50.000 0.00 0.00 0.00 3.69
3236 10040 3.821841 CAATCAGCCGACAAGTTTTACC 58.178 45.455 0.00 0.00 0.00 2.85
3237 10041 3.234386 GCAATCAGCCGACAAGTTTTAC 58.766 45.455 0.00 0.00 37.23 2.01
3238 10042 3.552604 GCAATCAGCCGACAAGTTTTA 57.447 42.857 0.00 0.00 37.23 1.52
3239 10043 2.422276 GCAATCAGCCGACAAGTTTT 57.578 45.000 0.00 0.00 37.23 2.43
3260 10064 3.640000 GCGATCCATCCAACGCGG 61.640 66.667 12.47 0.00 41.49 6.46
3263 10067 0.105964 TAAGGGCGATCCATCCAACG 59.894 55.000 0.00 0.00 38.24 4.10
3264 10068 2.341846 TTAAGGGCGATCCATCCAAC 57.658 50.000 0.00 0.00 38.24 3.77
3265 10069 3.593442 AATTAAGGGCGATCCATCCAA 57.407 42.857 0.00 0.00 38.24 3.53
3266 10070 3.138283 AGAAATTAAGGGCGATCCATCCA 59.862 43.478 0.00 0.00 38.24 3.41
3267 10071 3.756117 AGAAATTAAGGGCGATCCATCC 58.244 45.455 0.00 0.00 38.24 3.51
3268 10072 5.552178 ACTAGAAATTAAGGGCGATCCATC 58.448 41.667 0.00 0.00 38.24 3.51
3269 10073 5.568620 ACTAGAAATTAAGGGCGATCCAT 57.431 39.130 0.00 0.00 38.24 3.41
3270 10074 5.601313 AGTACTAGAAATTAAGGGCGATCCA 59.399 40.000 0.00 0.00 38.24 3.41
3271 10075 6.099159 AGTACTAGAAATTAAGGGCGATCC 57.901 41.667 0.00 0.00 0.00 3.36
3272 10076 7.697291 CGATAGTACTAGAAATTAAGGGCGATC 59.303 40.741 8.85 0.00 0.00 3.69
3273 10077 7.392673 TCGATAGTACTAGAAATTAAGGGCGAT 59.607 37.037 8.85 0.00 37.40 4.58
3274 10078 6.712095 TCGATAGTACTAGAAATTAAGGGCGA 59.288 38.462 8.85 0.00 37.40 5.54
3275 10079 6.906659 TCGATAGTACTAGAAATTAAGGGCG 58.093 40.000 8.85 0.00 37.40 6.13
3276 10080 7.884257 ACTCGATAGTACTAGAAATTAAGGGC 58.116 38.462 8.85 0.00 32.84 5.19
3289 10093 9.999660 TCTTGATAACTGATACTCGATAGTACT 57.000 33.333 0.00 0.00 40.98 2.73
3295 10099 9.469807 GTTCAATCTTGATAACTGATACTCGAT 57.530 33.333 0.00 0.00 37.00 3.59
3296 10100 7.921214 GGTTCAATCTTGATAACTGATACTCGA 59.079 37.037 0.00 0.00 37.00 4.04
3297 10101 7.706607 TGGTTCAATCTTGATAACTGATACTCG 59.293 37.037 0.00 0.00 37.00 4.18
3298 10102 8.948631 TGGTTCAATCTTGATAACTGATACTC 57.051 34.615 0.00 0.00 37.00 2.59
3299 10103 9.911788 ATTGGTTCAATCTTGATAACTGATACT 57.088 29.630 0.00 0.00 37.00 2.12
3316 10120 5.945191 TCTGCAGTATGATTGATTGGTTCAA 59.055 36.000 14.67 0.00 42.35 2.69
3317 10121 5.499313 TCTGCAGTATGATTGATTGGTTCA 58.501 37.500 14.67 0.00 39.69 3.18
3318 10122 6.436261 CATCTGCAGTATGATTGATTGGTTC 58.564 40.000 14.67 0.00 39.69 3.62
3319 10123 5.301045 CCATCTGCAGTATGATTGATTGGTT 59.699 40.000 20.83 0.00 39.69 3.67
3320 10124 4.825634 CCATCTGCAGTATGATTGATTGGT 59.174 41.667 20.83 0.00 39.69 3.67
3321 10125 5.067954 TCCATCTGCAGTATGATTGATTGG 58.932 41.667 20.83 11.23 39.69 3.16
3322 10126 6.819397 ATCCATCTGCAGTATGATTGATTG 57.181 37.500 20.83 8.09 39.69 2.67
3323 10127 7.037802 TCCTATCCATCTGCAGTATGATTGATT 60.038 37.037 20.83 3.73 39.69 2.57
3324 10128 6.442885 TCCTATCCATCTGCAGTATGATTGAT 59.557 38.462 20.83 17.22 39.69 2.57
3325 10129 5.781818 TCCTATCCATCTGCAGTATGATTGA 59.218 40.000 20.83 13.20 39.69 2.57
3326 10130 5.873712 GTCCTATCCATCTGCAGTATGATTG 59.126 44.000 20.83 16.46 39.69 2.67
3327 10131 5.784390 AGTCCTATCCATCTGCAGTATGATT 59.216 40.000 20.83 12.99 39.69 2.57
3328 10132 5.187381 CAGTCCTATCCATCTGCAGTATGAT 59.813 44.000 20.83 18.04 39.69 2.45
3329 10133 4.525874 CAGTCCTATCCATCTGCAGTATGA 59.474 45.833 20.83 13.51 39.69 2.15
3330 10134 4.818642 CAGTCCTATCCATCTGCAGTATG 58.181 47.826 14.67 15.04 40.87 2.39
3336 10140 0.676184 TCGCAGTCCTATCCATCTGC 59.324 55.000 6.02 6.02 46.38 4.26
3337 10141 2.094286 GGATCGCAGTCCTATCCATCTG 60.094 54.545 0.00 0.00 39.24 2.90
3338 10142 2.175202 GGATCGCAGTCCTATCCATCT 58.825 52.381 0.00 0.00 39.24 2.90
3339 10143 2.175202 AGGATCGCAGTCCTATCCATC 58.825 52.381 5.12 0.00 46.70 3.51
3340 10144 2.317371 AGGATCGCAGTCCTATCCAT 57.683 50.000 5.12 0.00 46.70 3.41
3341 10145 3.850454 AGGATCGCAGTCCTATCCA 57.150 52.632 5.12 0.00 46.70 3.41
3354 10158 0.039074 CTATGGTGTCGCCGAGGATC 60.039 60.000 0.00 0.00 41.21 3.36
3355 10159 0.467474 TCTATGGTGTCGCCGAGGAT 60.467 55.000 0.00 0.00 41.21 3.24
3356 10160 1.077285 TCTATGGTGTCGCCGAGGA 60.077 57.895 0.00 0.00 41.21 3.71
3357 10161 1.065928 GTCTATGGTGTCGCCGAGG 59.934 63.158 0.00 0.00 41.21 4.63
3358 10162 1.002684 GTAGTCTATGGTGTCGCCGAG 60.003 57.143 0.00 0.00 41.21 4.63
3359 10163 1.019673 GTAGTCTATGGTGTCGCCGA 58.980 55.000 0.00 0.00 41.21 5.54
3360 10164 0.316772 CGTAGTCTATGGTGTCGCCG 60.317 60.000 0.00 0.00 41.21 6.46
3361 10165 0.737219 ACGTAGTCTATGGTGTCGCC 59.263 55.000 4.13 0.00 29.74 5.54
3362 10166 1.399440 TCACGTAGTCTATGGTGTCGC 59.601 52.381 4.13 0.00 41.61 5.19
3363 10167 3.487042 CCTTCACGTAGTCTATGGTGTCG 60.487 52.174 4.13 0.00 41.61 4.35
3364 10168 3.693085 TCCTTCACGTAGTCTATGGTGTC 59.307 47.826 4.13 0.00 41.61 3.67
3365 10169 3.693807 TCCTTCACGTAGTCTATGGTGT 58.306 45.455 4.13 0.00 41.61 4.16
3366 10170 3.489398 GCTCCTTCACGTAGTCTATGGTG 60.489 52.174 4.13 5.99 41.61 4.17
3367 10171 2.688958 GCTCCTTCACGTAGTCTATGGT 59.311 50.000 4.13 0.00 41.61 3.55
3368 10172 2.952978 AGCTCCTTCACGTAGTCTATGG 59.047 50.000 4.13 0.00 41.61 2.74
3369 10173 5.512473 GTTAGCTCCTTCACGTAGTCTATG 58.488 45.833 0.00 0.00 41.61 2.23
3370 10174 4.272991 CGTTAGCTCCTTCACGTAGTCTAT 59.727 45.833 0.00 0.00 41.61 1.98
3371 10175 3.620374 CGTTAGCTCCTTCACGTAGTCTA 59.380 47.826 0.00 0.00 41.61 2.59
3372 10176 2.419324 CGTTAGCTCCTTCACGTAGTCT 59.581 50.000 0.00 0.00 41.61 3.24
3373 10177 2.477525 CCGTTAGCTCCTTCACGTAGTC 60.478 54.545 0.00 0.00 41.61 2.59
3375 10179 1.741706 TCCGTTAGCTCCTTCACGTAG 59.258 52.381 0.00 0.00 0.00 3.51
3376 10180 1.741706 CTCCGTTAGCTCCTTCACGTA 59.258 52.381 0.00 0.00 0.00 3.57
3377 10181 0.526662 CTCCGTTAGCTCCTTCACGT 59.473 55.000 0.00 0.00 0.00 4.49
3378 10182 3.330766 CTCCGTTAGCTCCTTCACG 57.669 57.895 0.00 0.00 0.00 4.35
3388 10192 1.664151 GGTTTTGATCCGCTCCGTTAG 59.336 52.381 0.00 0.00 0.00 2.34
3389 10193 1.676615 GGGTTTTGATCCGCTCCGTTA 60.677 52.381 0.00 0.00 0.00 3.18
3390 10194 0.958876 GGGTTTTGATCCGCTCCGTT 60.959 55.000 0.00 0.00 0.00 4.44
3391 10195 1.376812 GGGTTTTGATCCGCTCCGT 60.377 57.895 0.00 0.00 0.00 4.69
3392 10196 1.078426 AGGGTTTTGATCCGCTCCG 60.078 57.895 0.00 0.00 0.00 4.63
3393 10197 1.090052 CGAGGGTTTTGATCCGCTCC 61.090 60.000 7.77 0.00 0.00 4.70
3394 10198 0.108329 TCGAGGGTTTTGATCCGCTC 60.108 55.000 4.37 4.37 0.00 5.03
3395 10199 0.108138 CTCGAGGGTTTTGATCCGCT 60.108 55.000 3.91 0.00 0.00 5.52
3396 10200 1.090052 CCTCGAGGGTTTTGATCCGC 61.090 60.000 24.62 0.00 0.00 5.54
3397 10201 0.535335 TCCTCGAGGGTTTTGATCCG 59.465 55.000 30.80 0.89 36.25 4.18
3398 10202 1.739371 CGTCCTCGAGGGTTTTGATCC 60.739 57.143 30.80 7.18 39.71 3.36
3399 10203 1.203994 TCGTCCTCGAGGGTTTTGATC 59.796 52.381 30.80 10.28 41.35 2.92
3400 10204 1.263356 TCGTCCTCGAGGGTTTTGAT 58.737 50.000 30.80 0.00 41.35 2.57
3401 10205 2.736197 TCGTCCTCGAGGGTTTTGA 58.264 52.632 30.80 17.66 41.35 2.69
3410 10214 2.125229 CTCCGGTCTCGTCCTCGA 60.125 66.667 0.00 0.00 44.12 4.04
3411 10215 3.878519 GCTCCGGTCTCGTCCTCG 61.879 72.222 0.00 0.00 38.55 4.63
3412 10216 3.519930 GGCTCCGGTCTCGTCCTC 61.520 72.222 0.00 0.00 33.95 3.71
3413 10217 4.361971 TGGCTCCGGTCTCGTCCT 62.362 66.667 0.00 0.00 33.95 3.85
3414 10218 4.131088 GTGGCTCCGGTCTCGTCC 62.131 72.222 0.00 0.00 33.95 4.79
3415 10219 4.477975 CGTGGCTCCGGTCTCGTC 62.478 72.222 0.00 0.00 33.95 4.20
3424 10228 4.821589 CTCTTCCGGCGTGGCTCC 62.822 72.222 6.01 0.00 37.80 4.70
3428 10232 3.589654 TTCAGCTCTTCCGGCGTGG 62.590 63.158 6.01 0.00 40.09 4.94
3429 10233 2.048222 TTCAGCTCTTCCGGCGTG 60.048 61.111 6.01 0.00 34.52 5.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.