Multiple sequence alignment - TraesCS4D01G328400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G328400 chr4D 100.000 2210 0 0 1 2210 487044739 487046948 0.000000e+00 4082.0
1 TraesCS4D01G328400 chr5A 91.230 1927 100 28 4 1904 667941005 667942888 0.000000e+00 2558.0
2 TraesCS4D01G328400 chr4B 90.400 1823 82 29 3 1789 621984487 621986252 0.000000e+00 2311.0
3 TraesCS4D01G328400 chr4B 80.374 214 39 3 1001 1212 558753852 558753640 2.270000e-35 159.0
4 TraesCS4D01G328400 chr2A 89.862 217 21 1 1001 1216 679982444 679982228 6.010000e-71 278.0
5 TraesCS4D01G328400 chr2A 87.850 214 26 0 1000 1213 679985807 679985594 3.640000e-63 252.0
6 TraesCS4D01G328400 chr2B 89.401 217 22 1 1001 1216 640085921 640085705 2.800000e-69 272.0
7 TraesCS4D01G328400 chr2B 88.626 211 24 0 1000 1210 640101848 640101638 7.830000e-65 257.0
8 TraesCS4D01G328400 chr2D 89.252 214 23 0 1000 1213 537448405 537448192 3.620000e-68 268.0
9 TraesCS4D01G328400 chr2D 88.679 212 24 0 1000 1211 537456949 537456738 2.180000e-65 259.0
10 TraesCS4D01G328400 chr3B 96.970 33 1 0 2082 2114 130644009 130643977 3.070000e-04 56.5
11 TraesCS4D01G328400 chr3B 100.000 28 0 0 2087 2114 134271720 134271693 4.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G328400 chr4D 487044739 487046948 2209 False 4082 4082 100.000 1 2210 1 chr4D.!!$F1 2209
1 TraesCS4D01G328400 chr5A 667941005 667942888 1883 False 2558 2558 91.230 4 1904 1 chr5A.!!$F1 1900
2 TraesCS4D01G328400 chr4B 621984487 621986252 1765 False 2311 2311 90.400 3 1789 1 chr4B.!!$F1 1786
3 TraesCS4D01G328400 chr2A 679982228 679985807 3579 True 265 278 88.856 1000 1216 2 chr2A.!!$R1 216

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
28 29 0.033601 TGTGGCCCATCCCATTGTAC 60.034 55.0 0.0 0.0 37.2 2.9 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1957 5373 0.031314 CCACTCTGTCGCGCTCATAT 59.969 55.0 5.56 0.0 0.0 1.78 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 0.033601 TGTGGCCCATCCCATTGTAC 60.034 55.000 0.00 0.00 37.20 2.90
247 265 2.723719 GAGTACAAACGACGCCCGC 61.724 63.158 0.00 0.00 43.32 6.13
293 311 1.555992 ACGTCCGGTCCCATTCATAAA 59.444 47.619 0.00 0.00 0.00 1.40
387 405 4.605967 CGCACACAACGCCCACAC 62.606 66.667 0.00 0.00 0.00 3.82
388 406 4.605967 GCACACAACGCCCACACG 62.606 66.667 0.00 0.00 39.50 4.49
389 407 4.605967 CACACAACGCCCACACGC 62.606 66.667 0.00 0.00 36.19 5.34
391 409 4.605967 CACAACGCCCACACGCAC 62.606 66.667 0.00 0.00 36.19 5.34
414 432 1.083657 CCACGACGTTCTGTTTGCG 60.084 57.895 0.00 0.00 0.00 4.85
440 458 2.123511 CACCCCAAGCCCACAACA 60.124 61.111 0.00 0.00 0.00 3.33
486 506 2.780714 ACATATCTACCCTCGAGACGG 58.219 52.381 15.71 10.29 0.00 4.79
643 664 1.360393 AACCACCAGTCCACCACCAT 61.360 55.000 0.00 0.00 0.00 3.55
693 717 4.796495 CCCCGCCTTTTCCCCGAG 62.796 72.222 0.00 0.00 0.00 4.63
827 851 2.685743 TCCGATCCCTCGCCCAAA 60.686 61.111 0.00 0.00 43.66 3.28
912 936 1.906574 TCCACAGGTCCTACAATCACC 59.093 52.381 0.00 0.00 0.00 4.02
913 937 1.628340 CCACAGGTCCTACAATCACCA 59.372 52.381 0.00 0.00 31.99 4.17
914 938 2.615493 CCACAGGTCCTACAATCACCAC 60.615 54.545 0.00 0.00 31.99 4.16
915 939 2.038426 CACAGGTCCTACAATCACCACA 59.962 50.000 0.00 0.00 31.99 4.17
956 986 4.641645 CAGCTGCAACCGTGGGGA 62.642 66.667 0.00 0.00 36.97 4.81
1248 4646 0.249405 GCTTCCTCCTCATCGCTCAG 60.249 60.000 0.00 0.00 0.00 3.35
1258 4656 1.134995 TCATCGCTCAGCAGTTAGGTG 60.135 52.381 0.00 0.00 46.98 4.00
1298 4696 1.834263 AGAGGAATACCCAGTCACTGC 59.166 52.381 0.00 0.00 37.41 4.40
1343 4752 0.905357 GGTTCAGCTTCTAGGAGGCA 59.095 55.000 0.00 0.00 37.11 4.75
1355 4764 4.290093 TCTAGGAGGCACAGTATGATGTT 58.710 43.478 0.00 0.00 39.69 2.71
1417 4826 8.958060 AGGAATGTATAGCTCCAACTCTTATA 57.042 34.615 0.00 0.00 0.00 0.98
1433 4842 4.430007 TCTTATATGCGCTGTTTCGTCTT 58.570 39.130 9.73 0.00 0.00 3.01
1508 4917 3.911365 CAGAGAGAAAGCGTATATGAGCG 59.089 47.826 0.00 0.00 38.61 5.03
1545 4954 6.145338 ACTTCAATCATTGATCAATGCTCC 57.855 37.500 34.12 0.00 45.77 4.70
1568 4977 2.626266 ACCAACCGTCTTTCCCATTTTC 59.374 45.455 0.00 0.00 0.00 2.29
1725 5141 1.037493 TATGCGCCGGATGAAGTACT 58.963 50.000 5.05 0.00 0.00 2.73
1728 5144 0.596859 GCGCCGGATGAAGTACTACC 60.597 60.000 5.05 0.00 0.00 3.18
1730 5146 1.117150 GCCGGATGAAGTACTACCCA 58.883 55.000 5.05 0.00 0.00 4.51
1731 5147 1.483415 GCCGGATGAAGTACTACCCAA 59.517 52.381 5.05 0.00 0.00 4.12
1732 5148 2.093341 GCCGGATGAAGTACTACCCAAA 60.093 50.000 5.05 0.00 0.00 3.28
1733 5149 3.620472 GCCGGATGAAGTACTACCCAAAA 60.620 47.826 5.05 0.00 0.00 2.44
1764 5180 6.712095 TGCAGAATGGGTATGTTAATCTGATC 59.288 38.462 4.20 0.00 35.91 2.92
1795 5211 5.241064 TGAGTATAGGGATGTAAAGCGAGTC 59.759 44.000 0.00 0.00 0.00 3.36
1796 5212 5.138276 AGTATAGGGATGTAAAGCGAGTCA 58.862 41.667 0.00 0.00 0.00 3.41
1797 5213 5.775701 AGTATAGGGATGTAAAGCGAGTCAT 59.224 40.000 0.00 0.00 0.00 3.06
1806 5222 9.209175 GGATGTAAAGCGAGTCATATTTAATCT 57.791 33.333 0.00 0.00 0.00 2.40
1811 5227 7.772332 AAGCGAGTCATATTTAATCTCGTTT 57.228 32.000 12.87 10.92 46.08 3.60
1814 5230 8.969267 AGCGAGTCATATTTAATCTCGTTTAAG 58.031 33.333 12.87 0.00 46.08 1.85
1817 5233 8.958119 AGTCATATTTAATCTCGTTTAAGCCA 57.042 30.769 0.00 0.00 0.00 4.75
1887 5303 7.655521 TGAACTATCCAGCTAGCTAAAACTA 57.344 36.000 18.86 4.41 0.00 2.24
1904 5320 6.439675 AAAACTAACTAAACGGACTTGCAA 57.560 33.333 0.00 0.00 0.00 4.08
1905 5321 6.439675 AAACTAACTAAACGGACTTGCAAA 57.560 33.333 0.00 0.00 0.00 3.68
1906 5322 6.628919 AACTAACTAAACGGACTTGCAAAT 57.371 33.333 0.00 0.00 0.00 2.32
1907 5323 5.997385 ACTAACTAAACGGACTTGCAAATG 58.003 37.500 0.00 0.00 0.00 2.32
1908 5324 3.915437 ACTAAACGGACTTGCAAATGG 57.085 42.857 0.00 0.00 0.00 3.16
1909 5325 3.482436 ACTAAACGGACTTGCAAATGGA 58.518 40.909 0.00 0.00 0.00 3.41
1910 5326 3.886505 ACTAAACGGACTTGCAAATGGAA 59.113 39.130 0.00 0.00 0.00 3.53
1911 5327 3.810310 AAACGGACTTGCAAATGGAAA 57.190 38.095 0.00 0.00 0.00 3.13
1912 5328 3.810310 AACGGACTTGCAAATGGAAAA 57.190 38.095 0.00 0.00 0.00 2.29
1913 5329 3.369546 ACGGACTTGCAAATGGAAAAG 57.630 42.857 0.00 0.00 0.00 2.27
1914 5330 2.693074 ACGGACTTGCAAATGGAAAAGT 59.307 40.909 0.00 0.00 35.62 2.66
1915 5331 3.243401 ACGGACTTGCAAATGGAAAAGTC 60.243 43.478 0.00 1.15 45.00 3.01
1916 5332 3.243367 CGGACTTGCAAATGGAAAAGTCA 60.243 43.478 14.35 0.00 46.67 3.41
1917 5333 4.692228 GGACTTGCAAATGGAAAAGTCAA 58.308 39.130 14.35 0.00 46.67 3.18
1918 5334 5.115480 GGACTTGCAAATGGAAAAGTCAAA 58.885 37.500 14.35 0.00 46.67 2.69
1919 5335 5.584251 GGACTTGCAAATGGAAAAGTCAAAA 59.416 36.000 14.35 0.00 46.67 2.44
1920 5336 6.093357 GGACTTGCAAATGGAAAAGTCAAAAA 59.907 34.615 14.35 0.00 46.67 1.94
1921 5337 7.201723 GGACTTGCAAATGGAAAAGTCAAAAAT 60.202 33.333 14.35 0.00 46.67 1.82
1922 5338 7.474190 ACTTGCAAATGGAAAAGTCAAAAATG 58.526 30.769 0.00 0.00 0.00 2.32
1923 5339 7.336427 ACTTGCAAATGGAAAAGTCAAAAATGA 59.664 29.630 0.00 0.00 0.00 2.57
1924 5340 7.621428 TGCAAATGGAAAAGTCAAAAATGAA 57.379 28.000 0.00 0.00 0.00 2.57
1925 5341 8.223177 TGCAAATGGAAAAGTCAAAAATGAAT 57.777 26.923 0.00 0.00 0.00 2.57
1926 5342 8.129840 TGCAAATGGAAAAGTCAAAAATGAATG 58.870 29.630 0.00 0.00 0.00 2.67
1927 5343 8.130469 GCAAATGGAAAAGTCAAAAATGAATGT 58.870 29.630 0.00 0.00 0.00 2.71
1928 5344 9.654417 CAAATGGAAAAGTCAAAAATGAATGTC 57.346 29.630 0.00 0.00 0.00 3.06
1929 5345 8.961294 AATGGAAAAGTCAAAAATGAATGTCA 57.039 26.923 0.00 0.00 0.00 3.58
1930 5346 8.961294 ATGGAAAAGTCAAAAATGAATGTCAA 57.039 26.923 0.00 0.00 0.00 3.18
1931 5347 8.195617 TGGAAAAGTCAAAAATGAATGTCAAC 57.804 30.769 0.00 0.00 0.00 3.18
1932 5348 7.279758 TGGAAAAGTCAAAAATGAATGTCAACC 59.720 33.333 0.00 0.00 0.00 3.77
1933 5349 6.826893 AAAGTCAAAAATGAATGTCAACCG 57.173 33.333 0.00 0.00 0.00 4.44
1934 5350 5.766150 AGTCAAAAATGAATGTCAACCGA 57.234 34.783 0.00 0.00 0.00 4.69
1935 5351 5.762045 AGTCAAAAATGAATGTCAACCGAG 58.238 37.500 0.00 0.00 0.00 4.63
1936 5352 5.530915 AGTCAAAAATGAATGTCAACCGAGA 59.469 36.000 0.00 0.00 0.00 4.04
1937 5353 5.853282 GTCAAAAATGAATGTCAACCGAGAG 59.147 40.000 0.00 0.00 0.00 3.20
1938 5354 5.762711 TCAAAAATGAATGTCAACCGAGAGA 59.237 36.000 0.00 0.00 0.00 3.10
1939 5355 6.262049 TCAAAAATGAATGTCAACCGAGAGAA 59.738 34.615 0.00 0.00 0.00 2.87
1940 5356 5.869753 AAATGAATGTCAACCGAGAGAAG 57.130 39.130 0.00 0.00 0.00 2.85
1941 5357 2.688507 TGAATGTCAACCGAGAGAAGC 58.311 47.619 0.00 0.00 0.00 3.86
1942 5358 2.037121 TGAATGTCAACCGAGAGAAGCA 59.963 45.455 0.00 0.00 0.00 3.91
1943 5359 2.839486 ATGTCAACCGAGAGAAGCAA 57.161 45.000 0.00 0.00 0.00 3.91
1944 5360 2.613026 TGTCAACCGAGAGAAGCAAA 57.387 45.000 0.00 0.00 0.00 3.68
1945 5361 2.483876 TGTCAACCGAGAGAAGCAAAG 58.516 47.619 0.00 0.00 0.00 2.77
1946 5362 1.195674 GTCAACCGAGAGAAGCAAAGC 59.804 52.381 0.00 0.00 0.00 3.51
1947 5363 1.070758 TCAACCGAGAGAAGCAAAGCT 59.929 47.619 0.00 0.00 42.56 3.74
1957 5373 2.340427 AGCAAAGCTTTTAGGCGCA 58.660 47.368 9.53 0.00 33.89 6.09
1958 5374 0.890683 AGCAAAGCTTTTAGGCGCAT 59.109 45.000 9.53 3.98 33.89 4.73
1959 5375 2.091541 AGCAAAGCTTTTAGGCGCATA 58.908 42.857 9.53 2.52 33.89 3.14
1960 5376 2.689983 AGCAAAGCTTTTAGGCGCATAT 59.310 40.909 9.53 0.00 33.89 1.78
1961 5377 2.791004 GCAAAGCTTTTAGGCGCATATG 59.209 45.455 9.53 0.30 37.29 1.78
1962 5378 3.489059 GCAAAGCTTTTAGGCGCATATGA 60.489 43.478 9.53 0.00 37.29 2.15
1963 5379 4.285292 CAAAGCTTTTAGGCGCATATGAG 58.715 43.478 9.53 8.77 37.29 2.90
1964 5380 1.876156 AGCTTTTAGGCGCATATGAGC 59.124 47.619 21.72 21.72 40.21 4.26
1972 5388 4.326153 GCATATGAGCGCGACAGA 57.674 55.556 12.10 6.94 0.00 3.41
1973 5389 2.140066 GCATATGAGCGCGACAGAG 58.860 57.895 12.10 4.55 0.00 3.35
1974 5390 0.596083 GCATATGAGCGCGACAGAGT 60.596 55.000 12.10 0.00 0.00 3.24
1975 5391 1.126890 CATATGAGCGCGACAGAGTG 58.873 55.000 12.10 5.92 0.00 3.51
1976 5392 0.031314 ATATGAGCGCGACAGAGTGG 59.969 55.000 12.10 0.00 0.00 4.00
1977 5393 2.004808 TATGAGCGCGACAGAGTGGG 62.005 60.000 12.10 0.00 0.00 4.61
1978 5394 4.803426 GAGCGCGACAGAGTGGGG 62.803 72.222 12.10 0.00 0.00 4.96
1981 5397 4.742201 CGCGACAGAGTGGGGGTG 62.742 72.222 0.00 0.00 0.00 4.61
1982 5398 3.626924 GCGACAGAGTGGGGGTGT 61.627 66.667 0.00 0.00 0.00 4.16
1983 5399 2.657237 CGACAGAGTGGGGGTGTC 59.343 66.667 0.00 0.00 37.77 3.67
1984 5400 2.207229 CGACAGAGTGGGGGTGTCA 61.207 63.158 2.90 0.00 40.59 3.58
1985 5401 1.544825 CGACAGAGTGGGGGTGTCAT 61.545 60.000 2.90 0.00 40.59 3.06
1986 5402 0.693049 GACAGAGTGGGGGTGTCATT 59.307 55.000 0.00 0.00 40.34 2.57
1987 5403 1.906574 GACAGAGTGGGGGTGTCATTA 59.093 52.381 0.00 0.00 40.34 1.90
1988 5404 2.304761 GACAGAGTGGGGGTGTCATTAA 59.695 50.000 0.00 0.00 40.34 1.40
1989 5405 2.919602 ACAGAGTGGGGGTGTCATTAAT 59.080 45.455 0.00 0.00 0.00 1.40
1990 5406 3.333680 ACAGAGTGGGGGTGTCATTAATT 59.666 43.478 0.00 0.00 0.00 1.40
1991 5407 4.538490 ACAGAGTGGGGGTGTCATTAATTA 59.462 41.667 0.00 0.00 0.00 1.40
1992 5408 5.126067 CAGAGTGGGGGTGTCATTAATTAG 58.874 45.833 0.00 0.00 0.00 1.73
1993 5409 5.036916 AGAGTGGGGGTGTCATTAATTAGA 58.963 41.667 0.00 0.00 0.00 2.10
1994 5410 5.104485 AGAGTGGGGGTGTCATTAATTAGAC 60.104 44.000 0.12 0.12 35.37 2.59
1995 5411 4.079958 AGTGGGGGTGTCATTAATTAGACC 60.080 45.833 7.30 7.30 33.89 3.85
1996 5412 3.118186 TGGGGGTGTCATTAATTAGACCG 60.118 47.826 9.24 0.00 33.89 4.79
1997 5413 2.876550 GGGGTGTCATTAATTAGACCGC 59.123 50.000 14.61 14.61 33.89 5.68
1998 5414 3.433173 GGGGTGTCATTAATTAGACCGCT 60.433 47.826 19.75 0.00 34.49 5.52
1999 5415 4.202284 GGGGTGTCATTAATTAGACCGCTA 60.202 45.833 19.75 0.00 34.49 4.26
2000 5416 5.362263 GGGTGTCATTAATTAGACCGCTAA 58.638 41.667 9.24 0.00 40.65 3.09
2001 5417 5.235831 GGGTGTCATTAATTAGACCGCTAAC 59.764 44.000 9.24 0.00 39.29 2.34
2002 5418 5.813672 GGTGTCATTAATTAGACCGCTAACA 59.186 40.000 0.58 0.00 39.29 2.41
2003 5419 6.482308 GGTGTCATTAATTAGACCGCTAACAT 59.518 38.462 0.58 0.00 39.29 2.71
2004 5420 7.307219 GGTGTCATTAATTAGACCGCTAACATC 60.307 40.741 0.58 0.00 39.29 3.06
2005 5421 6.704493 TGTCATTAATTAGACCGCTAACATCC 59.296 38.462 4.07 0.00 39.29 3.51
2006 5422 6.929606 GTCATTAATTAGACCGCTAACATCCT 59.070 38.462 0.00 0.00 39.29 3.24
2007 5423 8.086522 GTCATTAATTAGACCGCTAACATCCTA 58.913 37.037 0.00 0.00 39.29 2.94
2008 5424 8.304596 TCATTAATTAGACCGCTAACATCCTAG 58.695 37.037 0.00 0.00 39.29 3.02
2009 5425 7.828508 TTAATTAGACCGCTAACATCCTAGA 57.171 36.000 0.00 0.00 39.29 2.43
2010 5426 5.708877 ATTAGACCGCTAACATCCTAGAC 57.291 43.478 0.00 0.00 39.29 2.59
2011 5427 1.948145 AGACCGCTAACATCCTAGACG 59.052 52.381 0.00 0.00 0.00 4.18
2012 5428 1.001597 GACCGCTAACATCCTAGACGG 60.002 57.143 0.00 0.00 40.91 4.79
2013 5429 7.661230 TTAGACCGCTAACATCCTAGACGGA 62.661 48.000 15.49 0.00 39.17 4.69
2022 5438 2.840640 TCCTAGACGGAGATTTGGGA 57.159 50.000 0.00 0.00 36.69 4.37
2023 5439 2.667470 TCCTAGACGGAGATTTGGGAG 58.333 52.381 0.00 0.00 36.69 4.30
2024 5440 1.689273 CCTAGACGGAGATTTGGGAGG 59.311 57.143 0.00 0.00 33.16 4.30
2025 5441 2.667470 CTAGACGGAGATTTGGGAGGA 58.333 52.381 0.00 0.00 0.00 3.71
2026 5442 1.196012 AGACGGAGATTTGGGAGGAC 58.804 55.000 0.00 0.00 0.00 3.85
2027 5443 1.196012 GACGGAGATTTGGGAGGACT 58.804 55.000 0.00 0.00 0.00 3.85
2028 5444 1.137282 GACGGAGATTTGGGAGGACTC 59.863 57.143 0.00 0.00 0.00 3.36
2041 5457 4.941325 GGAGGACTCCGTTGATTAAAAC 57.059 45.455 2.05 0.00 40.36 2.43
2042 5458 4.576879 GGAGGACTCCGTTGATTAAAACT 58.423 43.478 2.05 0.00 40.36 2.66
2043 5459 5.727434 GGAGGACTCCGTTGATTAAAACTA 58.273 41.667 2.05 0.00 40.36 2.24
2044 5460 5.579904 GGAGGACTCCGTTGATTAAAACTAC 59.420 44.000 2.05 0.00 40.36 2.73
2045 5461 5.166398 AGGACTCCGTTGATTAAAACTACG 58.834 41.667 10.85 10.85 36.59 3.51
2046 5462 5.047802 AGGACTCCGTTGATTAAAACTACGA 60.048 40.000 16.29 6.71 38.33 3.43
2047 5463 5.634859 GGACTCCGTTGATTAAAACTACGAA 59.365 40.000 16.29 1.87 38.33 3.85
2048 5464 6.183360 GGACTCCGTTGATTAAAACTACGAAG 60.183 42.308 16.29 10.97 38.33 3.79
2050 5466 6.364435 ACTCCGTTGATTAAAACTACGAAGTC 59.636 38.462 16.29 0.00 43.93 3.01
2051 5467 5.634859 TCCGTTGATTAAAACTACGAAGTCC 59.365 40.000 16.29 0.00 43.93 3.85
2052 5468 5.443693 CCGTTGATTAAAACTACGAAGTCCG 60.444 44.000 16.29 0.00 43.93 4.79
2053 5469 5.343058 CGTTGATTAAAACTACGAAGTCCGA 59.657 40.000 11.86 0.00 43.93 4.55
2054 5470 6.034256 CGTTGATTAAAACTACGAAGTCCGAT 59.966 38.462 11.86 0.00 43.93 4.18
2055 5471 7.389479 GTTGATTAAAACTACGAAGTCCGATC 58.611 38.462 0.00 0.00 43.93 3.69
2056 5472 6.623486 TGATTAAAACTACGAAGTCCGATCA 58.377 36.000 0.00 0.00 43.93 2.92
2057 5473 7.092079 TGATTAAAACTACGAAGTCCGATCAA 58.908 34.615 0.00 0.00 43.93 2.57
2058 5474 6.939551 TTAAAACTACGAAGTCCGATCAAG 57.060 37.500 0.00 0.00 43.93 3.02
2059 5475 4.516365 AAACTACGAAGTCCGATCAAGT 57.484 40.909 0.00 0.00 43.93 3.16
2060 5476 3.489180 ACTACGAAGTCCGATCAAGTG 57.511 47.619 0.00 0.00 43.93 3.16
2061 5477 2.818432 ACTACGAAGTCCGATCAAGTGT 59.182 45.455 0.00 0.00 43.93 3.55
2062 5478 2.349297 ACGAAGTCCGATCAAGTGTC 57.651 50.000 0.00 0.00 29.74 3.67
2063 5479 1.260206 CGAAGTCCGATCAAGTGTCG 58.740 55.000 0.00 0.00 41.76 4.35
2064 5480 0.992802 GAAGTCCGATCAAGTGTCGC 59.007 55.000 0.00 0.00 37.75 5.19
2065 5481 0.317160 AAGTCCGATCAAGTGTCGCA 59.683 50.000 0.00 0.00 37.75 5.10
2066 5482 0.317160 AGTCCGATCAAGTGTCGCAA 59.683 50.000 0.00 0.00 37.75 4.85
2067 5483 1.066858 AGTCCGATCAAGTGTCGCAAT 60.067 47.619 0.00 0.00 37.75 3.56
2068 5484 1.732259 GTCCGATCAAGTGTCGCAATT 59.268 47.619 0.00 0.00 37.75 2.32
2069 5485 2.159627 GTCCGATCAAGTGTCGCAATTT 59.840 45.455 0.00 0.00 37.75 1.82
2070 5486 2.811431 TCCGATCAAGTGTCGCAATTTT 59.189 40.909 0.00 0.00 37.75 1.82
2071 5487 3.997681 TCCGATCAAGTGTCGCAATTTTA 59.002 39.130 0.00 0.00 37.75 1.52
2072 5488 4.452795 TCCGATCAAGTGTCGCAATTTTAA 59.547 37.500 0.00 0.00 37.75 1.52
2073 5489 5.049336 TCCGATCAAGTGTCGCAATTTTAAA 60.049 36.000 0.00 0.00 37.75 1.52
2074 5490 5.059221 CCGATCAAGTGTCGCAATTTTAAAC 59.941 40.000 0.00 0.00 37.75 2.01
2075 5491 5.851177 CGATCAAGTGTCGCAATTTTAAACT 59.149 36.000 0.00 0.00 31.85 2.66
2076 5492 7.012943 CGATCAAGTGTCGCAATTTTAAACTA 58.987 34.615 0.00 0.00 31.85 2.24
2077 5493 7.532546 CGATCAAGTGTCGCAATTTTAAACTAA 59.467 33.333 0.00 0.00 31.85 2.24
2078 5494 8.728088 ATCAAGTGTCGCAATTTTAAACTAAG 57.272 30.769 0.00 0.00 0.00 2.18
2079 5495 7.921787 TCAAGTGTCGCAATTTTAAACTAAGA 58.078 30.769 0.00 0.00 0.00 2.10
2080 5496 8.564574 TCAAGTGTCGCAATTTTAAACTAAGAT 58.435 29.630 0.00 0.00 0.00 2.40
2081 5497 9.180678 CAAGTGTCGCAATTTTAAACTAAGATT 57.819 29.630 0.00 0.00 0.00 2.40
2082 5498 8.728088 AGTGTCGCAATTTTAAACTAAGATTG 57.272 30.769 5.54 5.54 40.94 2.67
2097 5513 8.816640 AACTAAGATTGCAACACTTATTTTGG 57.183 30.769 20.59 14.19 0.00 3.28
2098 5514 8.177119 ACTAAGATTGCAACACTTATTTTGGA 57.823 30.769 20.59 6.47 0.00 3.53
2099 5515 8.806146 ACTAAGATTGCAACACTTATTTTGGAT 58.194 29.630 20.59 3.43 0.00 3.41
2100 5516 9.294030 CTAAGATTGCAACACTTATTTTGGATC 57.706 33.333 20.59 4.23 0.00 3.36
2101 5517 6.324819 AGATTGCAACACTTATTTTGGATCG 58.675 36.000 0.00 0.00 0.00 3.69
2102 5518 5.697473 TTGCAACACTTATTTTGGATCGA 57.303 34.783 0.00 0.00 0.00 3.59
2103 5519 5.697473 TGCAACACTTATTTTGGATCGAA 57.303 34.783 0.00 0.00 0.00 3.71
2104 5520 5.698832 TGCAACACTTATTTTGGATCGAAG 58.301 37.500 0.00 0.00 0.00 3.79
2105 5521 5.095490 GCAACACTTATTTTGGATCGAAGG 58.905 41.667 0.00 0.00 0.00 3.46
2106 5522 5.640732 CAACACTTATTTTGGATCGAAGGG 58.359 41.667 0.00 0.00 0.00 3.95
2107 5523 4.918588 ACACTTATTTTGGATCGAAGGGT 58.081 39.130 0.00 0.00 0.00 4.34
2108 5524 4.700213 ACACTTATTTTGGATCGAAGGGTG 59.300 41.667 0.00 0.00 32.61 4.61
2109 5525 4.700213 CACTTATTTTGGATCGAAGGGTGT 59.300 41.667 0.00 0.00 0.00 4.16
2110 5526 5.878116 CACTTATTTTGGATCGAAGGGTGTA 59.122 40.000 0.00 0.00 0.00 2.90
2111 5527 6.373216 CACTTATTTTGGATCGAAGGGTGTAA 59.627 38.462 0.00 0.00 0.00 2.41
2112 5528 7.067008 CACTTATTTTGGATCGAAGGGTGTAAT 59.933 37.037 0.00 0.00 0.00 1.89
2113 5529 8.269317 ACTTATTTTGGATCGAAGGGTGTAATA 58.731 33.333 0.00 0.00 0.00 0.98
2114 5530 8.671384 TTATTTTGGATCGAAGGGTGTAATAG 57.329 34.615 0.00 0.00 0.00 1.73
2115 5531 5.943349 TTTGGATCGAAGGGTGTAATAGA 57.057 39.130 0.00 0.00 0.00 1.98
2116 5532 5.943349 TTGGATCGAAGGGTGTAATAGAA 57.057 39.130 0.00 0.00 0.00 2.10
2117 5533 5.943349 TGGATCGAAGGGTGTAATAGAAA 57.057 39.130 0.00 0.00 0.00 2.52
2118 5534 6.494666 TGGATCGAAGGGTGTAATAGAAAT 57.505 37.500 0.00 0.00 0.00 2.17
2119 5535 6.895782 TGGATCGAAGGGTGTAATAGAAATT 58.104 36.000 0.00 0.00 0.00 1.82
2120 5536 7.343357 TGGATCGAAGGGTGTAATAGAAATTT 58.657 34.615 0.00 0.00 0.00 1.82
2121 5537 8.487848 TGGATCGAAGGGTGTAATAGAAATTTA 58.512 33.333 0.00 0.00 0.00 1.40
2122 5538 8.989980 GGATCGAAGGGTGTAATAGAAATTTAG 58.010 37.037 0.00 0.00 0.00 1.85
2123 5539 9.760077 GATCGAAGGGTGTAATAGAAATTTAGA 57.240 33.333 0.00 0.00 0.00 2.10
2125 5541 9.374838 TCGAAGGGTGTAATAGAAATTTAGAAC 57.625 33.333 0.00 0.00 0.00 3.01
2126 5542 8.610035 CGAAGGGTGTAATAGAAATTTAGAACC 58.390 37.037 0.00 0.00 31.49 3.62
2127 5543 9.457436 GAAGGGTGTAATAGAAATTTAGAACCA 57.543 33.333 0.00 0.00 33.29 3.67
2128 5544 9.990868 AAGGGTGTAATAGAAATTTAGAACCAT 57.009 29.630 0.00 0.00 33.29 3.55
2129 5545 9.628500 AGGGTGTAATAGAAATTTAGAACCATC 57.372 33.333 0.00 0.00 33.29 3.51
2130 5546 8.557029 GGGTGTAATAGAAATTTAGAACCATCG 58.443 37.037 0.00 0.00 31.65 3.84
2131 5547 8.068380 GGTGTAATAGAAATTTAGAACCATCGC 58.932 37.037 0.00 0.00 0.00 4.58
2132 5548 8.609176 GTGTAATAGAAATTTAGAACCATCGCA 58.391 33.333 0.00 0.00 0.00 5.10
2133 5549 8.826710 TGTAATAGAAATTTAGAACCATCGCAG 58.173 33.333 0.00 0.00 0.00 5.18
2134 5550 9.042008 GTAATAGAAATTTAGAACCATCGCAGA 57.958 33.333 0.00 0.00 45.75 4.26
2135 5551 7.721286 ATAGAAATTTAGAACCATCGCAGAG 57.279 36.000 0.00 0.00 43.63 3.35
2136 5552 5.734720 AGAAATTTAGAACCATCGCAGAGA 58.265 37.500 0.00 0.00 43.63 3.10
2137 5553 6.352516 AGAAATTTAGAACCATCGCAGAGAT 58.647 36.000 0.00 0.00 43.63 2.75
2138 5554 6.825721 AGAAATTTAGAACCATCGCAGAGATT 59.174 34.615 0.00 0.00 43.63 2.40
2139 5555 7.337942 AGAAATTTAGAACCATCGCAGAGATTT 59.662 33.333 0.00 0.00 43.63 2.17
2140 5556 5.801350 TTTAGAACCATCGCAGAGATTTG 57.199 39.130 0.00 0.00 43.63 2.32
2141 5557 3.616956 AGAACCATCGCAGAGATTTGA 57.383 42.857 0.00 0.00 43.63 2.69
2142 5558 3.529533 AGAACCATCGCAGAGATTTGAG 58.470 45.455 0.00 0.00 43.63 3.02
2143 5559 3.196469 AGAACCATCGCAGAGATTTGAGA 59.804 43.478 0.00 0.00 43.63 3.27
2144 5560 3.616956 ACCATCGCAGAGATTTGAGAA 57.383 42.857 0.00 0.00 43.63 2.87
2145 5561 3.529533 ACCATCGCAGAGATTTGAGAAG 58.470 45.455 0.00 0.00 43.63 2.85
2146 5562 3.196469 ACCATCGCAGAGATTTGAGAAGA 59.804 43.478 0.00 0.00 43.63 2.87
2147 5563 4.141756 ACCATCGCAGAGATTTGAGAAGAT 60.142 41.667 0.00 0.00 43.63 2.40
2148 5564 4.815308 CCATCGCAGAGATTTGAGAAGATT 59.185 41.667 0.00 0.00 43.63 2.40
2149 5565 5.050227 CCATCGCAGAGATTTGAGAAGATTC 60.050 44.000 0.00 0.00 43.63 2.52
2150 5566 4.437239 TCGCAGAGATTTGAGAAGATTCC 58.563 43.478 0.00 0.00 0.00 3.01
2151 5567 3.244814 CGCAGAGATTTGAGAAGATTCCG 59.755 47.826 0.00 0.00 0.00 4.30
2152 5568 4.187694 GCAGAGATTTGAGAAGATTCCGT 58.812 43.478 0.00 0.00 0.00 4.69
2153 5569 4.633565 GCAGAGATTTGAGAAGATTCCGTT 59.366 41.667 0.00 0.00 0.00 4.44
2154 5570 5.123027 GCAGAGATTTGAGAAGATTCCGTTT 59.877 40.000 0.00 0.00 0.00 3.60
2155 5571 6.313905 GCAGAGATTTGAGAAGATTCCGTTTA 59.686 38.462 0.00 0.00 0.00 2.01
2156 5572 7.148407 GCAGAGATTTGAGAAGATTCCGTTTAA 60.148 37.037 0.00 0.00 0.00 1.52
2157 5573 8.887717 CAGAGATTTGAGAAGATTCCGTTTAAT 58.112 33.333 0.00 0.00 0.00 1.40
2160 5576 9.667107 AGATTTGAGAAGATTCCGTTTAATACA 57.333 29.630 0.00 0.00 0.00 2.29
2161 5577 9.922305 GATTTGAGAAGATTCCGTTTAATACAG 57.078 33.333 0.00 0.00 0.00 2.74
2162 5578 9.667107 ATTTGAGAAGATTCCGTTTAATACAGA 57.333 29.630 0.00 0.00 0.00 3.41
2163 5579 8.703604 TTGAGAAGATTCCGTTTAATACAGAG 57.296 34.615 0.00 0.00 0.00 3.35
2164 5580 7.837863 TGAGAAGATTCCGTTTAATACAGAGT 58.162 34.615 0.00 0.00 0.00 3.24
2165 5581 8.963725 TGAGAAGATTCCGTTTAATACAGAGTA 58.036 33.333 0.00 0.00 0.00 2.59
2166 5582 9.453325 GAGAAGATTCCGTTTAATACAGAGTAG 57.547 37.037 0.00 0.00 0.00 2.57
2167 5583 8.968969 AGAAGATTCCGTTTAATACAGAGTAGT 58.031 33.333 0.00 0.00 0.00 2.73
2168 5584 8.928270 AAGATTCCGTTTAATACAGAGTAGTG 57.072 34.615 0.00 0.00 0.00 2.74
2169 5585 7.490000 AGATTCCGTTTAATACAGAGTAGTGG 58.510 38.462 0.00 0.00 0.00 4.00
2170 5586 5.002464 TCCGTTTAATACAGAGTAGTGGC 57.998 43.478 0.00 0.00 0.00 5.01
2171 5587 4.117685 CCGTTTAATACAGAGTAGTGGCC 58.882 47.826 0.00 0.00 0.00 5.36
2172 5588 3.795101 CGTTTAATACAGAGTAGTGGCCG 59.205 47.826 0.00 0.00 0.00 6.13
2173 5589 3.447918 TTAATACAGAGTAGTGGCCGC 57.552 47.619 8.71 8.71 0.00 6.53
2174 5590 1.191535 AATACAGAGTAGTGGCCGCA 58.808 50.000 20.59 1.18 0.00 5.69
2175 5591 0.460311 ATACAGAGTAGTGGCCGCAC 59.540 55.000 20.59 14.36 0.00 5.34
2176 5592 0.611062 TACAGAGTAGTGGCCGCACT 60.611 55.000 20.59 18.86 39.08 4.40
2177 5593 1.153745 CAGAGTAGTGGCCGCACTC 60.154 63.158 27.55 27.55 39.19 3.51
2178 5594 1.304547 AGAGTAGTGGCCGCACTCT 60.305 57.895 29.92 29.92 43.22 3.24
2179 5595 0.034380 AGAGTAGTGGCCGCACTCTA 60.034 55.000 32.23 12.71 45.50 2.43
2180 5596 0.382515 GAGTAGTGGCCGCACTCTAG 59.617 60.000 27.54 0.00 36.57 2.43
2181 5597 1.038130 AGTAGTGGCCGCACTCTAGG 61.038 60.000 20.59 0.00 36.68 3.02
2187 5603 2.510238 CCGCACTCTAGGCTGCAC 60.510 66.667 0.50 0.00 32.57 4.57
2188 5604 2.262603 CGCACTCTAGGCTGCACA 59.737 61.111 0.50 0.00 32.57 4.57
2189 5605 2.097038 CGCACTCTAGGCTGCACAC 61.097 63.158 0.50 0.00 32.57 3.82
2190 5606 1.294780 GCACTCTAGGCTGCACACT 59.705 57.895 0.50 0.00 33.31 3.55
2191 5607 0.321122 GCACTCTAGGCTGCACACTT 60.321 55.000 0.50 0.00 33.31 3.16
2192 5608 1.066858 GCACTCTAGGCTGCACACTTA 60.067 52.381 0.50 0.00 33.31 2.24
2193 5609 2.419297 GCACTCTAGGCTGCACACTTAT 60.419 50.000 0.50 0.00 33.31 1.73
2194 5610 3.866651 CACTCTAGGCTGCACACTTATT 58.133 45.455 0.50 0.00 0.00 1.40
2195 5611 4.256920 CACTCTAGGCTGCACACTTATTT 58.743 43.478 0.50 0.00 0.00 1.40
2196 5612 4.697352 CACTCTAGGCTGCACACTTATTTT 59.303 41.667 0.50 0.00 0.00 1.82
2197 5613 5.182001 CACTCTAGGCTGCACACTTATTTTT 59.818 40.000 0.50 0.00 0.00 1.94
2198 5614 5.412904 ACTCTAGGCTGCACACTTATTTTTC 59.587 40.000 0.50 0.00 0.00 2.29
2199 5615 3.942130 AGGCTGCACACTTATTTTTCC 57.058 42.857 0.50 0.00 0.00 3.13
2200 5616 2.228822 AGGCTGCACACTTATTTTTCCG 59.771 45.455 0.50 0.00 0.00 4.30
2201 5617 2.227865 GGCTGCACACTTATTTTTCCGA 59.772 45.455 0.50 0.00 0.00 4.55
2202 5618 3.119495 GGCTGCACACTTATTTTTCCGAT 60.119 43.478 0.50 0.00 0.00 4.18
2203 5619 4.485163 GCTGCACACTTATTTTTCCGATT 58.515 39.130 0.00 0.00 0.00 3.34
2204 5620 4.324402 GCTGCACACTTATTTTTCCGATTG 59.676 41.667 0.00 0.00 0.00 2.67
2205 5621 5.697473 TGCACACTTATTTTTCCGATTGA 57.303 34.783 0.00 0.00 0.00 2.57
2206 5622 6.078202 TGCACACTTATTTTTCCGATTGAA 57.922 33.333 0.00 0.00 0.00 2.69
2207 5623 5.918011 TGCACACTTATTTTTCCGATTGAAC 59.082 36.000 0.00 0.00 31.05 3.18
2208 5624 5.059221 GCACACTTATTTTTCCGATTGAACG 59.941 40.000 0.00 0.00 31.05 3.95
2209 5625 6.367421 CACACTTATTTTTCCGATTGAACGA 58.633 36.000 0.00 0.00 35.09 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.901833 GGATGGGCCACAAGTGAAAAT 59.098 47.619 9.28 0.00 36.34 1.82
1 2 1.337118 GGATGGGCCACAAGTGAAAA 58.663 50.000 9.28 0.00 36.34 2.29
18 19 0.996583 GTGGAAGGGGTACAATGGGA 59.003 55.000 0.00 0.00 0.00 4.37
28 29 3.238788 AGTGGTTAAAAGTGGAAGGGG 57.761 47.619 0.00 0.00 0.00 4.79
62 74 2.624029 CCCCAGGCACAAAGATAACCAT 60.624 50.000 0.00 0.00 0.00 3.55
63 75 1.272425 CCCCAGGCACAAAGATAACCA 60.272 52.381 0.00 0.00 0.00 3.67
74 86 1.983119 TATGCAGCTACCCCAGGCAC 61.983 60.000 0.00 0.00 37.30 5.01
247 265 5.040715 GCTTGGTTAGAGCTCTCTTTTTG 57.959 43.478 22.17 9.22 40.93 2.44
293 311 2.609610 AGTGGTGCCGTATGGGGT 60.610 61.111 2.41 0.00 35.78 4.95
339 357 1.779025 GCGGTCTGTGCCATGCTATG 61.779 60.000 0.00 0.00 0.00 2.23
340 358 1.524621 GCGGTCTGTGCCATGCTAT 60.525 57.895 0.00 0.00 0.00 2.97
341 359 2.125147 GCGGTCTGTGCCATGCTA 60.125 61.111 0.00 0.00 0.00 3.49
389 407 3.698463 GAACGTCGTGGTGCCGTG 61.698 66.667 0.00 0.00 34.62 4.94
390 408 3.908081 AGAACGTCGTGGTGCCGT 61.908 61.111 0.00 0.00 36.17 5.68
391 409 3.403057 CAGAACGTCGTGGTGCCG 61.403 66.667 0.00 0.00 0.00 5.69
392 410 1.433837 AAACAGAACGTCGTGGTGCC 61.434 55.000 0.00 0.00 0.00 5.01
402 420 0.315869 GGTGTCACGCAAACAGAACG 60.316 55.000 0.00 0.00 0.00 3.95
414 432 2.115266 CTTGGGGTGGGGTGTCAC 59.885 66.667 0.00 0.00 36.95 3.67
440 458 5.066505 GGAGTATTGGACAAAAGCGATGATT 59.933 40.000 0.00 0.00 0.00 2.57
486 506 1.317431 TGCATGCTCATCCTTGTGGC 61.317 55.000 20.33 0.00 0.00 5.01
568 589 0.601558 TGGTGAAGCTAGACGACACC 59.398 55.000 16.38 16.38 44.12 4.16
643 664 1.798735 GGATCAACGGAGTCGACGA 59.201 57.895 10.46 0.00 45.00 4.20
693 717 2.330041 GTCCTCTAGCTCGCTCGC 59.670 66.667 0.00 0.00 0.00 5.03
736 760 1.675641 ATGCCTTTCCACACGCTCC 60.676 57.895 0.00 0.00 0.00 4.70
774 798 2.736682 GATCCCAAACCGACGCACG 61.737 63.158 0.00 0.00 42.18 5.34
803 827 2.506472 GAGGGATCGGAGCCAACC 59.494 66.667 15.10 0.00 0.00 3.77
824 848 6.017934 GTGTGACTGTGTATATATGGCCTTTG 60.018 42.308 3.32 0.00 0.00 2.77
827 851 4.901849 AGTGTGACTGTGTATATATGGCCT 59.098 41.667 3.32 0.00 0.00 5.19
912 936 0.671781 CCTCTGGTTCCTTCGCTGTG 60.672 60.000 0.00 0.00 0.00 3.66
913 937 1.674057 CCTCTGGTTCCTTCGCTGT 59.326 57.895 0.00 0.00 0.00 4.40
914 938 1.078848 CCCTCTGGTTCCTTCGCTG 60.079 63.158 0.00 0.00 0.00 5.18
915 939 1.536662 ACCCTCTGGTTCCTTCGCT 60.537 57.895 0.00 0.00 44.75 4.93
956 986 1.110442 CTCGCTGATTGACCTCTCCT 58.890 55.000 0.00 0.00 0.00 3.69
988 1023 2.903855 CGCCATGCCCCTTAGCTG 60.904 66.667 0.00 0.00 0.00 4.24
1248 4646 1.007336 CGACCACGACACCTAACTGC 61.007 60.000 0.00 0.00 42.66 4.40
1258 4656 1.139095 GATCCTCCACGACCACGAC 59.861 63.158 0.00 0.00 42.66 4.34
1298 4696 1.021390 AAGCCTGAAGATGAACGCGG 61.021 55.000 12.47 0.00 0.00 6.46
1328 4726 0.901124 ACTGTGCCTCCTAGAAGCTG 59.099 55.000 0.00 0.00 0.00 4.24
1343 4752 3.966979 TGCCCAATGAACATCATACTGT 58.033 40.909 0.00 0.00 35.76 3.55
1355 4764 6.795144 ATCATCAACTAAATTGCCCAATGA 57.205 33.333 0.00 0.00 38.29 2.57
1391 4800 5.799827 AGAGTTGGAGCTATACATTCCTC 57.200 43.478 0.00 0.00 32.12 3.71
1417 4826 0.235665 CACAAGACGAAACAGCGCAT 59.764 50.000 11.47 0.00 33.86 4.73
1433 4842 5.069318 TGCAATTGATTCTCAGTTACCACA 58.931 37.500 10.34 0.00 0.00 4.17
1508 4917 6.258230 TGATTGAAGTTCATCATGTGGAAC 57.742 37.500 18.32 18.32 42.82 3.62
1545 4954 2.781681 ATGGGAAAGACGGTTGGTAG 57.218 50.000 0.00 0.00 0.00 3.18
1568 4977 8.028938 CCTCAGTTTGGGAAGTTAATAATTGTG 58.971 37.037 0.00 0.00 0.00 3.33
1580 4989 0.895559 GGTGGCCTCAGTTTGGGAAG 60.896 60.000 3.32 0.00 0.00 3.46
1708 5124 0.101759 GTAGTACTTCATCCGGCGCA 59.898 55.000 10.83 0.00 0.00 6.09
1764 5180 9.167311 GCTTTACATCCCTATACTCAATTATGG 57.833 37.037 0.00 0.00 0.00 2.74
1776 5192 6.859112 ATATGACTCGCTTTACATCCCTAT 57.141 37.500 0.00 0.00 0.00 2.57
1849 5265 8.730680 GCTGGATAGTTCATTTTCACTTAGAAA 58.269 33.333 0.00 0.00 44.21 2.52
1850 5266 8.103305 AGCTGGATAGTTCATTTTCACTTAGAA 58.897 33.333 0.00 0.00 0.00 2.10
1851 5267 7.624549 AGCTGGATAGTTCATTTTCACTTAGA 58.375 34.615 0.00 0.00 0.00 2.10
1852 5268 7.856145 AGCTGGATAGTTCATTTTCACTTAG 57.144 36.000 0.00 0.00 0.00 2.18
1853 5269 7.495934 GCTAGCTGGATAGTTCATTTTCACTTA 59.504 37.037 7.70 0.00 0.00 2.24
1856 5272 5.819901 AGCTAGCTGGATAGTTCATTTTCAC 59.180 40.000 18.57 0.00 0.00 3.18
1857 5273 5.994250 AGCTAGCTGGATAGTTCATTTTCA 58.006 37.500 18.57 0.00 0.00 2.69
1858 5274 8.438676 TTTAGCTAGCTGGATAGTTCATTTTC 57.561 34.615 27.68 0.00 0.00 2.29
1859 5275 8.678199 GTTTTAGCTAGCTGGATAGTTCATTTT 58.322 33.333 27.68 0.00 0.00 1.82
1860 5276 8.049721 AGTTTTAGCTAGCTGGATAGTTCATTT 58.950 33.333 27.68 0.00 0.00 2.32
1861 5277 7.569240 AGTTTTAGCTAGCTGGATAGTTCATT 58.431 34.615 27.68 0.00 0.00 2.57
1862 5278 7.130681 AGTTTTAGCTAGCTGGATAGTTCAT 57.869 36.000 27.68 0.00 0.00 2.57
1863 5279 6.546428 AGTTTTAGCTAGCTGGATAGTTCA 57.454 37.500 27.68 0.01 0.00 3.18
1872 5288 6.810182 TCCGTTTAGTTAGTTTTAGCTAGCTG 59.190 38.462 27.68 3.98 34.92 4.24
1887 5303 3.886505 TCCATTTGCAAGTCCGTTTAGTT 59.113 39.130 0.00 0.00 0.00 2.24
1904 5320 8.961294 TGACATTCATTTTTGACTTTTCCATT 57.039 26.923 0.00 0.00 0.00 3.16
1905 5321 8.829612 GTTGACATTCATTTTTGACTTTTCCAT 58.170 29.630 0.00 0.00 0.00 3.41
1906 5322 7.279758 GGTTGACATTCATTTTTGACTTTTCCA 59.720 33.333 0.00 0.00 0.00 3.53
1907 5323 7.516627 CGGTTGACATTCATTTTTGACTTTTCC 60.517 37.037 0.00 0.00 0.00 3.13
1908 5324 7.221838 TCGGTTGACATTCATTTTTGACTTTTC 59.778 33.333 0.00 0.00 0.00 2.29
1909 5325 7.038659 TCGGTTGACATTCATTTTTGACTTTT 58.961 30.769 0.00 0.00 0.00 2.27
1910 5326 6.568869 TCGGTTGACATTCATTTTTGACTTT 58.431 32.000 0.00 0.00 0.00 2.66
1911 5327 6.039270 TCTCGGTTGACATTCATTTTTGACTT 59.961 34.615 0.00 0.00 0.00 3.01
1912 5328 5.530915 TCTCGGTTGACATTCATTTTTGACT 59.469 36.000 0.00 0.00 0.00 3.41
1913 5329 5.757886 TCTCGGTTGACATTCATTTTTGAC 58.242 37.500 0.00 0.00 0.00 3.18
1914 5330 5.762711 TCTCTCGGTTGACATTCATTTTTGA 59.237 36.000 0.00 0.00 0.00 2.69
1915 5331 6.000891 TCTCTCGGTTGACATTCATTTTTG 57.999 37.500 0.00 0.00 0.00 2.44
1916 5332 6.633500 TTCTCTCGGTTGACATTCATTTTT 57.367 33.333 0.00 0.00 0.00 1.94
1917 5333 5.335191 GCTTCTCTCGGTTGACATTCATTTT 60.335 40.000 0.00 0.00 0.00 1.82
1918 5334 4.154918 GCTTCTCTCGGTTGACATTCATTT 59.845 41.667 0.00 0.00 0.00 2.32
1919 5335 3.686726 GCTTCTCTCGGTTGACATTCATT 59.313 43.478 0.00 0.00 0.00 2.57
1920 5336 3.265791 GCTTCTCTCGGTTGACATTCAT 58.734 45.455 0.00 0.00 0.00 2.57
1921 5337 2.037121 TGCTTCTCTCGGTTGACATTCA 59.963 45.455 0.00 0.00 0.00 2.57
1922 5338 2.688507 TGCTTCTCTCGGTTGACATTC 58.311 47.619 0.00 0.00 0.00 2.67
1923 5339 2.839486 TGCTTCTCTCGGTTGACATT 57.161 45.000 0.00 0.00 0.00 2.71
1924 5340 2.839486 TTGCTTCTCTCGGTTGACAT 57.161 45.000 0.00 0.00 0.00 3.06
1925 5341 2.483876 CTTTGCTTCTCTCGGTTGACA 58.516 47.619 0.00 0.00 0.00 3.58
1926 5342 1.195674 GCTTTGCTTCTCTCGGTTGAC 59.804 52.381 0.00 0.00 0.00 3.18
1927 5343 1.070758 AGCTTTGCTTCTCTCGGTTGA 59.929 47.619 0.00 0.00 33.89 3.18
1928 5344 1.517242 AGCTTTGCTTCTCTCGGTTG 58.483 50.000 0.00 0.00 33.89 3.77
1929 5345 2.262423 AAGCTTTGCTTCTCTCGGTT 57.738 45.000 0.00 0.00 46.77 4.44
1939 5355 0.890683 ATGCGCCTAAAAGCTTTGCT 59.109 45.000 13.54 0.00 42.56 3.91
1940 5356 2.559998 TATGCGCCTAAAAGCTTTGC 57.440 45.000 13.54 11.81 0.00 3.68
1941 5357 4.285292 CTCATATGCGCCTAAAAGCTTTG 58.715 43.478 13.54 1.15 0.00 2.77
1942 5358 3.243201 GCTCATATGCGCCTAAAAGCTTT 60.243 43.478 5.69 5.69 0.00 3.51
1943 5359 2.291741 GCTCATATGCGCCTAAAAGCTT 59.708 45.455 16.87 0.00 0.00 3.74
1944 5360 1.876156 GCTCATATGCGCCTAAAAGCT 59.124 47.619 16.87 0.00 0.00 3.74
1945 5361 2.322371 GCTCATATGCGCCTAAAAGC 57.678 50.000 4.18 9.30 0.00 3.51
1955 5371 0.596083 ACTCTGTCGCGCTCATATGC 60.596 55.000 5.56 0.00 0.00 3.14
1956 5372 1.126890 CACTCTGTCGCGCTCATATG 58.873 55.000 5.56 0.00 0.00 1.78
1957 5373 0.031314 CCACTCTGTCGCGCTCATAT 59.969 55.000 5.56 0.00 0.00 1.78
1958 5374 1.433471 CCACTCTGTCGCGCTCATA 59.567 57.895 5.56 0.00 0.00 2.15
1959 5375 2.182791 CCACTCTGTCGCGCTCAT 59.817 61.111 5.56 0.00 0.00 2.90
1960 5376 4.056125 CCCACTCTGTCGCGCTCA 62.056 66.667 5.56 3.71 0.00 4.26
1961 5377 4.803426 CCCCACTCTGTCGCGCTC 62.803 72.222 5.56 0.00 0.00 5.03
1964 5380 4.742201 CACCCCCACTCTGTCGCG 62.742 72.222 0.00 0.00 0.00 5.87
1965 5381 3.591254 GACACCCCCACTCTGTCGC 62.591 68.421 0.00 0.00 0.00 5.19
1966 5382 1.544825 ATGACACCCCCACTCTGTCG 61.545 60.000 0.00 0.00 37.69 4.35
1967 5383 0.693049 AATGACACCCCCACTCTGTC 59.307 55.000 0.00 0.00 35.79 3.51
1968 5384 2.038863 TAATGACACCCCCACTCTGT 57.961 50.000 0.00 0.00 0.00 3.41
1969 5385 3.652057 ATTAATGACACCCCCACTCTG 57.348 47.619 0.00 0.00 0.00 3.35
1970 5386 5.036916 TCTAATTAATGACACCCCCACTCT 58.963 41.667 0.00 0.00 0.00 3.24
1971 5387 5.123936 GTCTAATTAATGACACCCCCACTC 58.876 45.833 1.97 0.00 33.75 3.51
1972 5388 4.079958 GGTCTAATTAATGACACCCCCACT 60.080 45.833 7.89 0.00 35.11 4.00
1973 5389 4.204799 GGTCTAATTAATGACACCCCCAC 58.795 47.826 7.89 0.00 35.11 4.61
1974 5390 3.118186 CGGTCTAATTAATGACACCCCCA 60.118 47.826 7.89 0.00 35.11 4.96
1975 5391 3.473625 CGGTCTAATTAATGACACCCCC 58.526 50.000 7.89 0.00 35.11 5.40
1976 5392 2.876550 GCGGTCTAATTAATGACACCCC 59.123 50.000 7.89 0.00 35.11 4.95
1977 5393 3.805207 AGCGGTCTAATTAATGACACCC 58.195 45.455 7.89 1.49 35.11 4.61
1978 5394 5.813672 TGTTAGCGGTCTAATTAATGACACC 59.186 40.000 7.89 4.65 37.16 4.16
1979 5395 6.897259 TGTTAGCGGTCTAATTAATGACAC 57.103 37.500 7.89 1.05 37.16 3.67
1980 5396 6.704493 GGATGTTAGCGGTCTAATTAATGACA 59.296 38.462 7.89 0.00 37.16 3.58
1981 5397 6.929606 AGGATGTTAGCGGTCTAATTAATGAC 59.070 38.462 0.00 0.00 37.16 3.06
1982 5398 7.062749 AGGATGTTAGCGGTCTAATTAATGA 57.937 36.000 0.00 0.00 37.16 2.57
1983 5399 8.304596 TCTAGGATGTTAGCGGTCTAATTAATG 58.695 37.037 0.00 0.00 37.16 1.90
1984 5400 8.305317 GTCTAGGATGTTAGCGGTCTAATTAAT 58.695 37.037 0.00 0.00 37.16 1.40
1985 5401 7.521099 CGTCTAGGATGTTAGCGGTCTAATTAA 60.521 40.741 0.00 0.00 37.16 1.40
1986 5402 6.072838 CGTCTAGGATGTTAGCGGTCTAATTA 60.073 42.308 0.00 0.00 37.16 1.40
1987 5403 5.278364 CGTCTAGGATGTTAGCGGTCTAATT 60.278 44.000 0.00 0.00 37.16 1.40
1988 5404 4.215827 CGTCTAGGATGTTAGCGGTCTAAT 59.784 45.833 0.00 0.00 37.16 1.73
1989 5405 3.562973 CGTCTAGGATGTTAGCGGTCTAA 59.437 47.826 0.00 0.00 32.66 2.10
1990 5406 3.136763 CGTCTAGGATGTTAGCGGTCTA 58.863 50.000 0.00 0.00 0.00 2.59
1991 5407 1.948145 CGTCTAGGATGTTAGCGGTCT 59.052 52.381 0.00 0.00 0.00 3.85
1992 5408 1.001597 CCGTCTAGGATGTTAGCGGTC 60.002 57.143 0.00 0.00 45.00 4.79
1993 5409 1.030457 CCGTCTAGGATGTTAGCGGT 58.970 55.000 0.00 0.00 45.00 5.68
1994 5410 1.315690 TCCGTCTAGGATGTTAGCGG 58.684 55.000 0.00 0.00 45.98 5.52
2004 5420 1.689273 CCTCCCAAATCTCCGTCTAGG 59.311 57.143 0.00 0.00 42.97 3.02
2005 5421 2.362717 GTCCTCCCAAATCTCCGTCTAG 59.637 54.545 0.00 0.00 0.00 2.43
2006 5422 2.024273 AGTCCTCCCAAATCTCCGTCTA 60.024 50.000 0.00 0.00 0.00 2.59
2007 5423 1.196012 GTCCTCCCAAATCTCCGTCT 58.804 55.000 0.00 0.00 0.00 4.18
2008 5424 1.137282 GAGTCCTCCCAAATCTCCGTC 59.863 57.143 0.00 0.00 0.00 4.79
2009 5425 1.196012 GAGTCCTCCCAAATCTCCGT 58.804 55.000 0.00 0.00 0.00 4.69
2010 5426 0.466124 GGAGTCCTCCCAAATCTCCG 59.534 60.000 0.41 0.00 43.94 4.63
2011 5427 0.466124 CGGAGTCCTCCCAAATCTCC 59.534 60.000 7.77 0.00 46.96 3.71
2012 5428 1.196012 ACGGAGTCCTCCCAAATCTC 58.804 55.000 7.77 0.00 46.96 2.75
2013 5429 1.279271 CAACGGAGTCCTCCCAAATCT 59.721 52.381 7.77 0.00 45.00 2.40
2014 5430 1.278127 TCAACGGAGTCCTCCCAAATC 59.722 52.381 7.77 0.00 45.00 2.17
2015 5431 1.358152 TCAACGGAGTCCTCCCAAAT 58.642 50.000 7.77 0.00 45.00 2.32
2016 5432 1.358152 ATCAACGGAGTCCTCCCAAA 58.642 50.000 7.77 0.00 45.00 3.28
2017 5433 1.358152 AATCAACGGAGTCCTCCCAA 58.642 50.000 7.77 0.00 45.00 4.12
2018 5434 2.241281 TAATCAACGGAGTCCTCCCA 57.759 50.000 7.77 0.00 45.00 4.37
2019 5435 3.622166 TTTAATCAACGGAGTCCTCCC 57.378 47.619 7.77 0.00 45.00 4.30
2020 5436 4.576879 AGTTTTAATCAACGGAGTCCTCC 58.423 43.478 7.77 3.09 45.00 4.30
2021 5437 5.287992 CGTAGTTTTAATCAACGGAGTCCTC 59.712 44.000 7.77 0.00 45.00 3.71
2022 5438 5.047802 TCGTAGTTTTAATCAACGGAGTCCT 60.048 40.000 7.77 0.00 45.00 3.85
2023 5439 5.163513 TCGTAGTTTTAATCAACGGAGTCC 58.836 41.667 0.00 0.00 45.00 3.85
2024 5440 6.364435 ACTTCGTAGTTTTAATCAACGGAGTC 59.636 38.462 1.45 0.00 46.57 3.36
2026 5442 6.183360 GGACTTCGTAGTTTTAATCAACGGAG 60.183 42.308 0.00 0.17 43.27 4.63
2027 5443 5.634859 GGACTTCGTAGTTTTAATCAACGGA 59.365 40.000 0.00 0.00 33.84 4.69
2028 5444 5.443693 CGGACTTCGTAGTTTTAATCAACGG 60.444 44.000 0.00 0.00 33.84 4.44
2029 5445 5.343058 TCGGACTTCGTAGTTTTAATCAACG 59.657 40.000 0.00 0.00 40.32 4.10
2030 5446 6.695292 TCGGACTTCGTAGTTTTAATCAAC 57.305 37.500 0.00 0.00 40.32 3.18
2031 5447 7.092079 TGATCGGACTTCGTAGTTTTAATCAA 58.908 34.615 0.00 0.00 40.32 2.57
2032 5448 6.623486 TGATCGGACTTCGTAGTTTTAATCA 58.377 36.000 0.00 2.06 40.32 2.57
2033 5449 7.275123 ACTTGATCGGACTTCGTAGTTTTAATC 59.725 37.037 0.00 0.00 40.32 1.75
2034 5450 7.063074 CACTTGATCGGACTTCGTAGTTTTAAT 59.937 37.037 0.00 0.00 40.32 1.40
2035 5451 6.364165 CACTTGATCGGACTTCGTAGTTTTAA 59.636 38.462 0.00 0.00 40.32 1.52
2036 5452 5.860182 CACTTGATCGGACTTCGTAGTTTTA 59.140 40.000 0.00 0.00 40.32 1.52
2037 5453 4.684703 CACTTGATCGGACTTCGTAGTTTT 59.315 41.667 0.00 0.00 40.32 2.43
2038 5454 4.235360 CACTTGATCGGACTTCGTAGTTT 58.765 43.478 0.00 0.00 40.32 2.66
2039 5455 3.255149 ACACTTGATCGGACTTCGTAGTT 59.745 43.478 0.00 0.00 40.32 2.24
2040 5456 2.818432 ACACTTGATCGGACTTCGTAGT 59.182 45.455 0.00 0.00 40.32 2.73
2041 5457 3.427243 GACACTTGATCGGACTTCGTAG 58.573 50.000 0.00 0.00 40.32 3.51
2042 5458 2.159612 CGACACTTGATCGGACTTCGTA 60.160 50.000 0.00 0.00 40.32 3.43
2043 5459 1.401148 CGACACTTGATCGGACTTCGT 60.401 52.381 0.00 0.00 40.32 3.85
2044 5460 1.260206 CGACACTTGATCGGACTTCG 58.740 55.000 0.00 0.00 35.92 3.79
2045 5461 0.992802 GCGACACTTGATCGGACTTC 59.007 55.000 0.00 0.00 39.99 3.01
2046 5462 0.317160 TGCGACACTTGATCGGACTT 59.683 50.000 0.00 0.00 39.99 3.01
2047 5463 0.317160 TTGCGACACTTGATCGGACT 59.683 50.000 0.00 0.00 39.78 3.85
2048 5464 1.359848 ATTGCGACACTTGATCGGAC 58.640 50.000 0.00 0.00 39.78 4.79
2049 5465 2.093306 AATTGCGACACTTGATCGGA 57.907 45.000 0.00 0.00 39.99 4.55
2050 5466 2.900122 AAATTGCGACACTTGATCGG 57.100 45.000 0.00 0.00 39.99 4.18
2051 5467 5.851177 AGTTTAAAATTGCGACACTTGATCG 59.149 36.000 0.00 0.00 42.55 3.69
2052 5468 8.722342 TTAGTTTAAAATTGCGACACTTGATC 57.278 30.769 0.00 0.00 0.00 2.92
2053 5469 8.564574 TCTTAGTTTAAAATTGCGACACTTGAT 58.435 29.630 0.00 0.00 0.00 2.57
2054 5470 7.921787 TCTTAGTTTAAAATTGCGACACTTGA 58.078 30.769 0.00 0.00 0.00 3.02
2055 5471 8.728088 ATCTTAGTTTAAAATTGCGACACTTG 57.272 30.769 0.00 0.00 0.00 3.16
2056 5472 9.180678 CAATCTTAGTTTAAAATTGCGACACTT 57.819 29.630 0.00 0.00 0.00 3.16
2057 5473 7.326063 GCAATCTTAGTTTAAAATTGCGACACT 59.674 33.333 15.18 0.00 41.71 3.55
2058 5474 7.437124 GCAATCTTAGTTTAAAATTGCGACAC 58.563 34.615 15.18 0.00 41.71 3.67
2059 5475 7.561237 GCAATCTTAGTTTAAAATTGCGACA 57.439 32.000 15.18 0.00 41.71 4.35
2071 5487 9.260002 CCAAAATAAGTGTTGCAATCTTAGTTT 57.740 29.630 27.07 27.07 40.21 2.66
2072 5488 8.637986 TCCAAAATAAGTGTTGCAATCTTAGTT 58.362 29.630 22.14 22.14 34.83 2.24
2073 5489 8.177119 TCCAAAATAAGTGTTGCAATCTTAGT 57.823 30.769 22.11 19.17 0.00 2.24
2074 5490 9.294030 GATCCAAAATAAGTGTTGCAATCTTAG 57.706 33.333 22.11 13.64 0.00 2.18
2075 5491 7.967854 CGATCCAAAATAAGTGTTGCAATCTTA 59.032 33.333 20.88 20.88 0.00 2.10
2076 5492 6.808212 CGATCCAAAATAAGTGTTGCAATCTT 59.192 34.615 18.73 18.73 0.00 2.40
2077 5493 6.150976 TCGATCCAAAATAAGTGTTGCAATCT 59.849 34.615 0.59 1.49 0.00 2.40
2078 5494 6.321717 TCGATCCAAAATAAGTGTTGCAATC 58.678 36.000 0.59 0.00 0.00 2.67
2079 5495 6.266168 TCGATCCAAAATAAGTGTTGCAAT 57.734 33.333 0.59 0.00 0.00 3.56
2080 5496 5.697473 TCGATCCAAAATAAGTGTTGCAA 57.303 34.783 0.00 0.00 0.00 4.08
2081 5497 5.335583 CCTTCGATCCAAAATAAGTGTTGCA 60.336 40.000 0.00 0.00 0.00 4.08
2082 5498 5.095490 CCTTCGATCCAAAATAAGTGTTGC 58.905 41.667 0.00 0.00 0.00 4.17
2083 5499 5.183140 ACCCTTCGATCCAAAATAAGTGTTG 59.817 40.000 0.00 0.00 0.00 3.33
2084 5500 5.183140 CACCCTTCGATCCAAAATAAGTGTT 59.817 40.000 0.00 0.00 0.00 3.32
2085 5501 4.700213 CACCCTTCGATCCAAAATAAGTGT 59.300 41.667 0.00 0.00 0.00 3.55
2086 5502 4.700213 ACACCCTTCGATCCAAAATAAGTG 59.300 41.667 0.00 0.00 0.00 3.16
2087 5503 4.918588 ACACCCTTCGATCCAAAATAAGT 58.081 39.130 0.00 0.00 0.00 2.24
2088 5504 6.995511 TTACACCCTTCGATCCAAAATAAG 57.004 37.500 0.00 0.00 0.00 1.73
2089 5505 8.487848 TCTATTACACCCTTCGATCCAAAATAA 58.512 33.333 0.00 0.00 0.00 1.40
2090 5506 8.025270 TCTATTACACCCTTCGATCCAAAATA 57.975 34.615 0.00 0.00 0.00 1.40
2091 5507 6.895782 TCTATTACACCCTTCGATCCAAAAT 58.104 36.000 0.00 0.00 0.00 1.82
2092 5508 6.302535 TCTATTACACCCTTCGATCCAAAA 57.697 37.500 0.00 0.00 0.00 2.44
2093 5509 5.943349 TCTATTACACCCTTCGATCCAAA 57.057 39.130 0.00 0.00 0.00 3.28
2094 5510 5.943349 TTCTATTACACCCTTCGATCCAA 57.057 39.130 0.00 0.00 0.00 3.53
2095 5511 5.943349 TTTCTATTACACCCTTCGATCCA 57.057 39.130 0.00 0.00 0.00 3.41
2096 5512 7.803279 AAATTTCTATTACACCCTTCGATCC 57.197 36.000 0.00 0.00 0.00 3.36
2097 5513 9.760077 TCTAAATTTCTATTACACCCTTCGATC 57.240 33.333 0.00 0.00 0.00 3.69
2099 5515 9.374838 GTTCTAAATTTCTATTACACCCTTCGA 57.625 33.333 0.00 0.00 0.00 3.71
2100 5516 8.610035 GGTTCTAAATTTCTATTACACCCTTCG 58.390 37.037 0.00 0.00 0.00 3.79
2101 5517 9.457436 TGGTTCTAAATTTCTATTACACCCTTC 57.543 33.333 0.00 0.00 0.00 3.46
2102 5518 9.990868 ATGGTTCTAAATTTCTATTACACCCTT 57.009 29.630 0.00 0.00 0.00 3.95
2103 5519 9.628500 GATGGTTCTAAATTTCTATTACACCCT 57.372 33.333 0.00 0.00 0.00 4.34
2104 5520 8.557029 CGATGGTTCTAAATTTCTATTACACCC 58.443 37.037 0.00 0.00 0.00 4.61
2105 5521 8.068380 GCGATGGTTCTAAATTTCTATTACACC 58.932 37.037 0.00 0.00 0.00 4.16
2106 5522 8.609176 TGCGATGGTTCTAAATTTCTATTACAC 58.391 33.333 0.00 0.00 0.00 2.90
2107 5523 8.725405 TGCGATGGTTCTAAATTTCTATTACA 57.275 30.769 0.00 0.00 0.00 2.41
2108 5524 9.042008 TCTGCGATGGTTCTAAATTTCTATTAC 57.958 33.333 0.00 0.00 0.00 1.89
2109 5525 9.261180 CTCTGCGATGGTTCTAAATTTCTATTA 57.739 33.333 0.00 0.00 0.00 0.98
2110 5526 7.987458 TCTCTGCGATGGTTCTAAATTTCTATT 59.013 33.333 0.00 0.00 0.00 1.73
2111 5527 7.500992 TCTCTGCGATGGTTCTAAATTTCTAT 58.499 34.615 0.00 0.00 0.00 1.98
2112 5528 6.873997 TCTCTGCGATGGTTCTAAATTTCTA 58.126 36.000 0.00 0.00 0.00 2.10
2113 5529 5.734720 TCTCTGCGATGGTTCTAAATTTCT 58.265 37.500 0.00 0.00 0.00 2.52
2114 5530 6.610741 ATCTCTGCGATGGTTCTAAATTTC 57.389 37.500 0.00 0.00 0.00 2.17
2115 5531 7.121168 TCAAATCTCTGCGATGGTTCTAAATTT 59.879 33.333 0.00 0.00 31.20 1.82
2116 5532 6.599244 TCAAATCTCTGCGATGGTTCTAAATT 59.401 34.615 0.00 0.00 31.20 1.82
2117 5533 6.115446 TCAAATCTCTGCGATGGTTCTAAAT 58.885 36.000 0.00 0.00 31.20 1.40
2118 5534 5.487433 TCAAATCTCTGCGATGGTTCTAAA 58.513 37.500 0.00 0.00 31.20 1.85
2119 5535 5.084818 TCAAATCTCTGCGATGGTTCTAA 57.915 39.130 0.00 0.00 31.20 2.10
2120 5536 4.402474 TCTCAAATCTCTGCGATGGTTCTA 59.598 41.667 0.00 0.00 31.20 2.10
2121 5537 3.196469 TCTCAAATCTCTGCGATGGTTCT 59.804 43.478 0.00 0.00 31.20 3.01
2122 5538 3.525537 TCTCAAATCTCTGCGATGGTTC 58.474 45.455 0.00 0.00 31.20 3.62
2123 5539 3.616956 TCTCAAATCTCTGCGATGGTT 57.383 42.857 0.00 0.00 31.20 3.67
2124 5540 3.196469 TCTTCTCAAATCTCTGCGATGGT 59.804 43.478 0.00 0.00 31.20 3.55
2125 5541 3.790091 TCTTCTCAAATCTCTGCGATGG 58.210 45.455 0.00 0.00 31.20 3.51
2126 5542 5.050227 GGAATCTTCTCAAATCTCTGCGATG 60.050 44.000 0.00 0.00 31.20 3.84
2127 5543 5.055812 GGAATCTTCTCAAATCTCTGCGAT 58.944 41.667 0.00 0.00 0.00 4.58
2128 5544 4.437239 GGAATCTTCTCAAATCTCTGCGA 58.563 43.478 0.00 0.00 0.00 5.10
2129 5545 3.244814 CGGAATCTTCTCAAATCTCTGCG 59.755 47.826 0.00 0.00 0.00 5.18
2130 5546 4.187694 ACGGAATCTTCTCAAATCTCTGC 58.812 43.478 0.00 0.00 0.00 4.26
2131 5547 6.734104 AAACGGAATCTTCTCAAATCTCTG 57.266 37.500 0.00 0.00 0.00 3.35
2134 5550 9.667107 TGTATTAAACGGAATCTTCTCAAATCT 57.333 29.630 0.00 0.00 0.00 2.40
2135 5551 9.922305 CTGTATTAAACGGAATCTTCTCAAATC 57.078 33.333 0.00 0.00 36.47 2.17
2136 5552 9.667107 TCTGTATTAAACGGAATCTTCTCAAAT 57.333 29.630 0.00 0.00 40.65 2.32
2137 5553 9.151471 CTCTGTATTAAACGGAATCTTCTCAAA 57.849 33.333 0.00 0.00 43.02 2.69
2138 5554 8.311836 ACTCTGTATTAAACGGAATCTTCTCAA 58.688 33.333 0.00 0.00 43.02 3.02
2139 5555 7.837863 ACTCTGTATTAAACGGAATCTTCTCA 58.162 34.615 0.00 0.00 43.02 3.27
2140 5556 9.453325 CTACTCTGTATTAAACGGAATCTTCTC 57.547 37.037 0.00 0.00 43.02 2.87
2141 5557 8.968969 ACTACTCTGTATTAAACGGAATCTTCT 58.031 33.333 0.00 0.00 43.02 2.85
2142 5558 9.021863 CACTACTCTGTATTAAACGGAATCTTC 57.978 37.037 0.00 0.00 43.02 2.87
2143 5559 7.980099 CCACTACTCTGTATTAAACGGAATCTT 59.020 37.037 0.00 0.00 43.02 2.40
2144 5560 7.490000 CCACTACTCTGTATTAAACGGAATCT 58.510 38.462 0.00 0.00 43.02 2.40
2145 5561 6.200475 GCCACTACTCTGTATTAAACGGAATC 59.800 42.308 0.00 0.00 43.02 2.52
2146 5562 6.047231 GCCACTACTCTGTATTAAACGGAAT 58.953 40.000 0.00 0.00 43.02 3.01
2147 5563 5.413499 GCCACTACTCTGTATTAAACGGAA 58.587 41.667 0.00 0.00 43.02 4.30
2148 5564 4.142093 GGCCACTACTCTGTATTAAACGGA 60.142 45.833 0.00 0.00 41.37 4.69
2149 5565 4.117685 GGCCACTACTCTGTATTAAACGG 58.882 47.826 0.00 0.00 35.61 4.44
2150 5566 3.795101 CGGCCACTACTCTGTATTAAACG 59.205 47.826 2.24 0.00 0.00 3.60
2151 5567 3.554731 GCGGCCACTACTCTGTATTAAAC 59.445 47.826 2.24 0.00 0.00 2.01
2152 5568 3.196039 TGCGGCCACTACTCTGTATTAAA 59.804 43.478 2.24 0.00 0.00 1.52
2153 5569 2.761767 TGCGGCCACTACTCTGTATTAA 59.238 45.455 2.24 0.00 0.00 1.40
2154 5570 2.100252 GTGCGGCCACTACTCTGTATTA 59.900 50.000 2.24 0.00 38.93 0.98
2155 5571 1.134788 GTGCGGCCACTACTCTGTATT 60.135 52.381 2.24 0.00 38.93 1.89
2156 5572 0.460311 GTGCGGCCACTACTCTGTAT 59.540 55.000 2.24 0.00 38.93 2.29
2157 5573 1.888018 GTGCGGCCACTACTCTGTA 59.112 57.895 2.24 0.00 38.93 2.74
2158 5574 2.657237 GTGCGGCCACTACTCTGT 59.343 61.111 2.24 0.00 38.93 3.41
2170 5586 2.510238 GTGCAGCCTAGAGTGCGG 60.510 66.667 10.57 0.00 42.96 5.69
2171 5587 2.097038 GTGTGCAGCCTAGAGTGCG 61.097 63.158 10.57 0.00 42.96 5.34
2172 5588 0.321122 AAGTGTGCAGCCTAGAGTGC 60.321 55.000 8.84 8.84 40.29 4.40
2173 5589 3.533606 ATAAGTGTGCAGCCTAGAGTG 57.466 47.619 0.00 0.00 0.00 3.51
2174 5590 4.559862 AAATAAGTGTGCAGCCTAGAGT 57.440 40.909 0.00 0.00 0.00 3.24
2175 5591 5.163713 GGAAAAATAAGTGTGCAGCCTAGAG 60.164 44.000 0.00 0.00 0.00 2.43
2176 5592 4.700213 GGAAAAATAAGTGTGCAGCCTAGA 59.300 41.667 0.00 0.00 0.00 2.43
2177 5593 4.437390 CGGAAAAATAAGTGTGCAGCCTAG 60.437 45.833 0.00 0.00 0.00 3.02
2178 5594 3.438781 CGGAAAAATAAGTGTGCAGCCTA 59.561 43.478 0.00 0.00 0.00 3.93
2179 5595 2.228822 CGGAAAAATAAGTGTGCAGCCT 59.771 45.455 0.00 0.00 0.00 4.58
2180 5596 2.227865 TCGGAAAAATAAGTGTGCAGCC 59.772 45.455 0.00 0.00 0.00 4.85
2181 5597 3.552604 TCGGAAAAATAAGTGTGCAGC 57.447 42.857 0.00 0.00 0.00 5.25
2182 5598 5.698832 TCAATCGGAAAAATAAGTGTGCAG 58.301 37.500 0.00 0.00 0.00 4.41
2183 5599 5.697473 TCAATCGGAAAAATAAGTGTGCA 57.303 34.783 0.00 0.00 0.00 4.57
2184 5600 5.059221 CGTTCAATCGGAAAAATAAGTGTGC 59.941 40.000 0.00 0.00 37.23 4.57
2185 5601 6.367421 TCGTTCAATCGGAAAAATAAGTGTG 58.633 36.000 0.00 0.00 37.23 3.82
2186 5602 6.548441 TCGTTCAATCGGAAAAATAAGTGT 57.452 33.333 0.00 0.00 37.23 3.55


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.