Multiple sequence alignment - TraesCS4D01G328200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G328200 chr4D 100.000 4528 0 0 1 4528 486944440 486939913 0.000000e+00 8362.0
1 TraesCS4D01G328200 chr4D 90.491 326 26 4 4205 4528 312942180 312942502 4.190000e-115 425.0
2 TraesCS4D01G328200 chr5A 93.007 3003 120 26 783 3782 667329509 667326594 0.000000e+00 4300.0
3 TraesCS4D01G328200 chr5A 90.105 475 36 7 77 549 667330857 667330392 1.390000e-169 606.0
4 TraesCS4D01G328200 chr5A 91.667 132 8 2 3998 4126 667326109 667325978 3.600000e-41 180.0
5 TraesCS4D01G328200 chr5A 95.161 62 2 1 698 758 667329568 667329507 3.730000e-16 97.1
6 TraesCS4D01G328200 chr4B 93.466 2219 99 26 2015 4205 621820668 621818468 0.000000e+00 3253.0
7 TraesCS4D01G328200 chr4B 93.964 1110 40 13 777 1866 621821857 621820755 0.000000e+00 1653.0
8 TraesCS4D01G328200 chr4B 92.135 89 4 1 1900 1988 621820753 621820668 6.150000e-24 122.0
9 TraesCS4D01G328200 chr5D 90.798 326 26 3 4205 4528 520095087 520094764 2.500000e-117 433.0
10 TraesCS4D01G328200 chr5D 90.712 323 25 4 4209 4528 349374383 349374063 4.190000e-115 425.0
11 TraesCS4D01G328200 chr5D 90.184 326 29 2 4205 4528 385439730 385439406 5.420000e-114 422.0
12 TraesCS4D01G328200 chr5D 90.184 326 28 3 4205 4528 549587533 549587856 5.420000e-114 422.0
13 TraesCS4D01G328200 chr6D 90.994 322 24 5 4206 4525 418627968 418628286 3.240000e-116 429.0
14 TraesCS4D01G328200 chr6D 90.712 323 26 3 4209 4528 463711156 463711477 1.160000e-115 427.0
15 TraesCS4D01G328200 chr2D 90.462 325 27 3 4206 4528 539868983 539869305 4.190000e-115 425.0
16 TraesCS4D01G328200 chr1D 90.214 327 26 5 4206 4528 62223513 62223837 5.420000e-114 422.0
17 TraesCS4D01G328200 chr7D 92.963 270 14 2 1662 1927 157759809 157760077 5.490000e-104 388.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G328200 chr4D 486939913 486944440 4527 True 8362.000 8362 100.000000 1 4528 1 chr4D.!!$R1 4527
1 TraesCS4D01G328200 chr5A 667325978 667330857 4879 True 1295.775 4300 92.485000 77 4126 4 chr5A.!!$R1 4049
2 TraesCS4D01G328200 chr4B 621818468 621821857 3389 True 1676.000 3253 93.188333 777 4205 3 chr4B.!!$R1 3428

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
607 609 0.042188 CAACACTCCTGCACGTTTCG 60.042 55.0 0.00 0.0 0.00 3.46 F
1767 2506 0.115745 AGTTTGGAGGTAGGTCCGGA 59.884 55.0 0.00 0.0 39.81 5.14 F
2013 2752 0.464036 CAGTAGCTATTGCCGTCCCA 59.536 55.0 3.03 0.0 40.80 4.37 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2136 2875 0.251341 ACATGGCTGAAACTGGGGTC 60.251 55.000 0.0 0.0 0.00 4.46 R
3108 3847 1.221021 CAGTAAGGGGAGTTCGGGC 59.779 63.158 0.0 0.0 0.00 6.13 R
3925 4839 0.187361 TGTTGTTCCTTTGGAGGGGG 59.813 55.000 0.0 0.0 43.72 5.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
56 57 8.821686 ATTTGTATCAATCCCTAACATCACAA 57.178 30.769 0.00 0.00 0.00 3.33
57 58 8.821686 TTTGTATCAATCCCTAACATCACAAT 57.178 30.769 0.00 0.00 0.00 2.71
58 59 7.806409 TGTATCAATCCCTAACATCACAATG 57.194 36.000 0.00 0.00 38.93 2.82
59 60 5.779529 ATCAATCCCTAACATCACAATGC 57.220 39.130 0.00 0.00 36.26 3.56
60 61 3.953612 TCAATCCCTAACATCACAATGCC 59.046 43.478 0.00 0.00 36.26 4.40
61 62 3.668141 ATCCCTAACATCACAATGCCA 57.332 42.857 0.00 0.00 36.26 4.92
62 63 3.448093 TCCCTAACATCACAATGCCAA 57.552 42.857 0.00 0.00 36.26 4.52
63 64 3.772387 TCCCTAACATCACAATGCCAAA 58.228 40.909 0.00 0.00 36.26 3.28
64 65 4.155709 TCCCTAACATCACAATGCCAAAA 58.844 39.130 0.00 0.00 36.26 2.44
65 66 4.776837 TCCCTAACATCACAATGCCAAAAT 59.223 37.500 0.00 0.00 36.26 1.82
66 67 4.871557 CCCTAACATCACAATGCCAAAATG 59.128 41.667 0.00 0.00 36.26 2.32
67 68 4.871557 CCTAACATCACAATGCCAAAATGG 59.128 41.667 0.00 0.00 41.55 3.16
68 69 4.620589 AACATCACAATGCCAAAATGGA 57.379 36.364 0.00 0.00 39.92 3.41
69 70 4.829872 ACATCACAATGCCAAAATGGAT 57.170 36.364 0.00 0.00 39.92 3.41
70 71 4.509616 ACATCACAATGCCAAAATGGATG 58.490 39.130 0.00 0.00 39.92 3.51
71 72 4.223255 ACATCACAATGCCAAAATGGATGA 59.777 37.500 0.00 0.00 39.92 2.92
72 73 4.459390 TCACAATGCCAAAATGGATGAG 57.541 40.909 0.00 0.00 40.96 2.90
73 74 2.933906 CACAATGCCAAAATGGATGAGC 59.066 45.455 0.00 0.00 40.96 4.26
74 75 2.198406 CAATGCCAAAATGGATGAGCG 58.802 47.619 0.00 0.00 40.96 5.03
75 76 1.477553 ATGCCAAAATGGATGAGCGT 58.522 45.000 0.00 0.00 40.96 5.07
81 82 3.427503 CCAAAATGGATGAGCGTAACACC 60.428 47.826 0.00 0.00 40.96 4.16
93 94 0.378257 GTAACACCGCATGCCATCAG 59.622 55.000 13.15 0.00 0.00 2.90
108 109 3.681034 GCCATCAGTGATCTAGTTGCAGT 60.681 47.826 1.56 0.00 0.00 4.40
109 110 4.511527 CCATCAGTGATCTAGTTGCAGTT 58.488 43.478 1.56 0.00 0.00 3.16
111 112 3.329386 TCAGTGATCTAGTTGCAGTTGC 58.671 45.455 0.00 0.00 42.50 4.17
132 133 6.360370 TGCAATAGTAAGAGGAGAACAAGT 57.640 37.500 0.00 0.00 0.00 3.16
140 141 3.251484 AGAGGAGAACAAGTGGGAATCA 58.749 45.455 0.00 0.00 0.00 2.57
156 157 5.774690 TGGGAATCAATGTTTATAGGGATGC 59.225 40.000 0.00 0.00 0.00 3.91
161 162 8.537728 AATCAATGTTTATAGGGATGCTCAAA 57.462 30.769 0.00 0.00 0.00 2.69
175 176 3.256558 TGCTCAAACGATGTCTCATCTG 58.743 45.455 7.89 4.75 0.00 2.90
176 177 3.257393 GCTCAAACGATGTCTCATCTGT 58.743 45.455 7.89 5.25 0.00 3.41
200 201 8.352201 TGTTAGTTGGTGAAGATTCTTTGATTG 58.648 33.333 0.00 0.00 0.00 2.67
210 211 7.177216 TGAAGATTCTTTGATTGTTATGCCTGT 59.823 33.333 0.00 0.00 0.00 4.00
213 214 4.808558 TCTTTGATTGTTATGCCTGTTGC 58.191 39.130 0.00 0.00 41.77 4.17
221 222 1.131638 TATGCCTGTTGCTAGGAGGG 58.868 55.000 6.45 0.00 40.42 4.30
249 250 7.541783 TGCAAGTAATTTGAAGATTTTGGATCG 59.458 33.333 0.00 0.00 39.21 3.69
310 312 3.369366 CCCAAATTCCCAAGCACCATAAC 60.369 47.826 0.00 0.00 0.00 1.89
317 319 2.493278 CCCAAGCACCATAACAGAAAGG 59.507 50.000 0.00 0.00 0.00 3.11
323 325 3.699038 GCACCATAACAGAAAGGCCAATA 59.301 43.478 5.01 0.00 0.00 1.90
324 326 4.342092 GCACCATAACAGAAAGGCCAATAT 59.658 41.667 5.01 0.00 0.00 1.28
344 346 2.124736 GGCACATGAGCCGGCTAA 60.125 61.111 32.97 25.74 46.12 3.09
355 357 2.092323 AGCCGGCTAAGAATGTTTTCC 58.908 47.619 31.86 0.00 31.84 3.13
356 358 1.134367 GCCGGCTAAGAATGTTTTCCC 59.866 52.381 22.15 0.00 31.84 3.97
357 359 2.723273 CCGGCTAAGAATGTTTTCCCT 58.277 47.619 0.00 0.00 31.84 4.20
361 363 5.510690 CCGGCTAAGAATGTTTTCCCTTTTT 60.511 40.000 0.00 0.00 31.84 1.94
362 364 5.633601 CGGCTAAGAATGTTTTCCCTTTTTC 59.366 40.000 0.00 0.00 31.84 2.29
365 367 7.715249 GGCTAAGAATGTTTTCCCTTTTTCTTT 59.285 33.333 0.00 0.00 35.62 2.52
371 373 4.532521 TGTTTTCCCTTTTTCTTTGGACCA 59.467 37.500 0.00 0.00 0.00 4.02
384 386 4.104102 TCTTTGGACCACCTAAACATCACT 59.896 41.667 0.00 0.00 37.04 3.41
391 393 3.172050 CACCTAAACATCACTCGACTCG 58.828 50.000 0.00 0.00 0.00 4.18
399 401 3.982058 ACATCACTCGACTCGAAAAACTC 59.018 43.478 2.16 0.00 34.74 3.01
424 426 9.350951 TCTATCAACTTTAGTCGATTCTATCCA 57.649 33.333 0.00 0.00 0.00 3.41
431 433 3.782046 AGTCGATTCTATCCAAACCGTG 58.218 45.455 0.00 0.00 0.00 4.94
452 454 1.379843 ATGCCAATCCAACGGTCCC 60.380 57.895 0.00 0.00 0.00 4.46
454 456 2.437716 CCAATCCAACGGTCCCGG 60.438 66.667 10.91 0.00 44.69 5.73
481 483 5.431765 GAGCATTGTTTATCTTCCTCCTCA 58.568 41.667 0.00 0.00 0.00 3.86
504 506 1.147153 CCATCTCCTTTCCCGCCTC 59.853 63.158 0.00 0.00 0.00 4.70
507 509 1.677637 ATCTCCTTTCCCGCCTCGAC 61.678 60.000 0.00 0.00 0.00 4.20
515 517 4.856607 CCGCCTCGACGCCTTCTC 62.857 72.222 0.63 0.00 0.00 2.87
519 521 2.776913 CCTCGACGCCTTCTCCCTC 61.777 68.421 0.00 0.00 0.00 4.30
558 560 5.041191 CCCCTTGGCCATCTATACATATC 57.959 47.826 6.09 0.00 0.00 1.63
559 561 4.141390 CCCCTTGGCCATCTATACATATCC 60.141 50.000 6.09 0.00 0.00 2.59
560 562 4.443457 CCCTTGGCCATCTATACATATCCG 60.443 50.000 6.09 0.00 0.00 4.18
561 563 3.819564 TGGCCATCTATACATATCCGC 57.180 47.619 0.00 0.00 0.00 5.54
562 564 2.434336 TGGCCATCTATACATATCCGCC 59.566 50.000 0.00 0.00 0.00 6.13
563 565 2.434336 GGCCATCTATACATATCCGCCA 59.566 50.000 0.00 0.00 33.99 5.69
564 566 3.071602 GGCCATCTATACATATCCGCCAT 59.928 47.826 0.00 0.00 33.99 4.40
565 567 4.444876 GGCCATCTATACATATCCGCCATT 60.445 45.833 0.00 0.00 33.99 3.16
566 568 5.221641 GGCCATCTATACATATCCGCCATTA 60.222 44.000 0.00 0.00 33.99 1.90
567 569 6.467677 GCCATCTATACATATCCGCCATTAT 58.532 40.000 0.00 0.00 0.00 1.28
568 570 6.591834 GCCATCTATACATATCCGCCATTATC 59.408 42.308 0.00 0.00 0.00 1.75
569 571 7.526192 GCCATCTATACATATCCGCCATTATCT 60.526 40.741 0.00 0.00 0.00 1.98
570 572 8.370940 CCATCTATACATATCCGCCATTATCTT 58.629 37.037 0.00 0.00 0.00 2.40
571 573 9.416794 CATCTATACATATCCGCCATTATCTTC 57.583 37.037 0.00 0.00 0.00 2.87
572 574 7.649057 TCTATACATATCCGCCATTATCTTCG 58.351 38.462 0.00 0.00 0.00 3.79
581 583 2.405357 GCCATTATCTTCGTCATCGTCG 59.595 50.000 0.00 0.00 38.33 5.12
596 598 2.028484 TCGGACGCACAACACTCC 59.972 61.111 0.00 0.00 0.00 3.85
600 602 1.887242 GACGCACAACACTCCTGCA 60.887 57.895 0.00 0.00 0.00 4.41
605 607 0.732571 CACAACACTCCTGCACGTTT 59.267 50.000 0.00 0.00 0.00 3.60
607 609 0.042188 CAACACTCCTGCACGTTTCG 60.042 55.000 0.00 0.00 0.00 3.46
616 618 3.000080 GCACGTTTCGCGAGACCTG 62.000 63.158 22.38 20.84 44.77 4.00
617 619 2.049433 ACGTTTCGCGAGACCTGG 60.049 61.111 22.38 12.08 44.77 4.45
626 628 3.695606 GAGACCTGGCCGAGCACA 61.696 66.667 0.00 0.00 0.00 4.57
627 629 3.005539 AGACCTGGCCGAGCACAT 61.006 61.111 0.00 0.00 0.00 3.21
633 635 3.589881 GGCCGAGCACATCATGGC 61.590 66.667 0.00 0.00 44.98 4.40
635 637 3.274586 CCGAGCACATCATGGCCG 61.275 66.667 0.00 0.00 0.00 6.13
638 640 2.124570 AGCACATCATGGCCGACC 60.125 61.111 0.00 0.00 0.00 4.79
662 664 2.701073 CGTTGTCTCAACGTCCTAGT 57.299 50.000 21.56 0.00 38.69 2.57
663 665 3.818961 CGTTGTCTCAACGTCCTAGTA 57.181 47.619 21.56 0.00 38.69 1.82
664 666 3.744987 CGTTGTCTCAACGTCCTAGTAG 58.255 50.000 21.56 0.00 38.69 2.57
672 674 6.262720 GTCTCAACGTCCTAGTAGAATGGTAT 59.737 42.308 0.00 0.00 0.00 2.73
678 680 4.527427 GTCCTAGTAGAATGGTATGACCCC 59.473 50.000 0.00 0.00 37.50 4.95
679 681 3.510360 CCTAGTAGAATGGTATGACCCCG 59.490 52.174 0.00 0.00 37.50 5.73
690 692 2.348411 ATGACCCCGGCTAAATTCTG 57.652 50.000 0.00 0.00 0.00 3.02
746 1462 7.770433 TCTTTACATCATTCATGTACTTGGAGG 59.230 37.037 8.74 2.30 45.97 4.30
747 1463 4.785301 ACATCATTCATGTACTTGGAGGG 58.215 43.478 8.74 0.00 44.56 4.30
749 1465 3.459828 TCATTCATGTACTTGGAGGGGA 58.540 45.455 8.74 0.00 0.00 4.81
750 1466 3.455910 TCATTCATGTACTTGGAGGGGAG 59.544 47.826 8.74 0.00 0.00 4.30
752 1468 1.080498 TCATGTACTTGGAGGGGAGGT 59.920 52.381 8.74 0.00 0.00 3.85
753 1469 1.210478 CATGTACTTGGAGGGGAGGTG 59.790 57.143 0.80 0.00 0.00 4.00
754 1470 0.490017 TGTACTTGGAGGGGAGGTGA 59.510 55.000 0.00 0.00 0.00 4.02
755 1471 1.080498 TGTACTTGGAGGGGAGGTGAT 59.920 52.381 0.00 0.00 0.00 3.06
756 1472 1.486726 GTACTTGGAGGGGAGGTGATG 59.513 57.143 0.00 0.00 0.00 3.07
757 1473 0.119155 ACTTGGAGGGGAGGTGATGA 59.881 55.000 0.00 0.00 0.00 2.92
758 1474 1.274650 ACTTGGAGGGGAGGTGATGAT 60.275 52.381 0.00 0.00 0.00 2.45
759 1475 1.419387 CTTGGAGGGGAGGTGATGATC 59.581 57.143 0.00 0.00 0.00 2.92
760 1476 0.400525 TGGAGGGGAGGTGATGATCC 60.401 60.000 0.00 0.00 34.64 3.36
761 1477 0.400525 GGAGGGGAGGTGATGATCCA 60.401 60.000 0.00 0.00 37.33 3.41
762 1478 0.761802 GAGGGGAGGTGATGATCCAC 59.238 60.000 0.00 0.00 39.47 4.02
763 1479 0.344790 AGGGGAGGTGATGATCCACT 59.655 55.000 2.68 0.00 44.80 4.00
764 1480 0.761802 GGGGAGGTGATGATCCACTC 59.238 60.000 5.28 5.28 35.99 3.51
765 1481 1.694048 GGGGAGGTGATGATCCACTCT 60.694 57.143 11.53 0.00 35.99 3.24
766 1482 1.691434 GGGAGGTGATGATCCACTCTC 59.309 57.143 11.53 5.75 37.33 3.20
767 1483 2.392662 GGAGGTGATGATCCACTCTCA 58.607 52.381 11.53 0.00 36.73 3.27
768 1484 2.971330 GGAGGTGATGATCCACTCTCAT 59.029 50.000 11.53 0.00 36.73 2.90
769 1485 3.006752 GGAGGTGATGATCCACTCTCATC 59.993 52.174 11.53 6.39 46.01 2.92
800 1516 2.480419 CGCTGAACGTCTTTTTCCTGAT 59.520 45.455 0.00 0.00 36.87 2.90
801 1517 3.665323 CGCTGAACGTCTTTTTCCTGATG 60.665 47.826 0.00 0.00 36.87 3.07
802 1518 3.498397 GCTGAACGTCTTTTTCCTGATGA 59.502 43.478 0.00 0.00 0.00 2.92
803 1519 4.154918 GCTGAACGTCTTTTTCCTGATGAT 59.845 41.667 0.00 0.00 0.00 2.45
804 1520 5.611796 TGAACGTCTTTTTCCTGATGATG 57.388 39.130 0.00 0.00 0.00 3.07
805 1521 5.304778 TGAACGTCTTTTTCCTGATGATGA 58.695 37.500 0.00 0.00 0.00 2.92
806 1522 5.409520 TGAACGTCTTTTTCCTGATGATGAG 59.590 40.000 0.00 0.00 0.00 2.90
812 1528 7.520453 CGTCTTTTTCCTGATGATGAGAAAACA 60.520 37.037 0.00 0.00 37.80 2.83
849 1565 4.344865 GCTCTCCGGCCCCACAAA 62.345 66.667 0.00 0.00 0.00 2.83
1277 2003 1.067495 GGCTTGCTGACTTACGTCTCT 60.067 52.381 0.00 0.00 40.86 3.10
1300 2026 1.042003 TTGTGTGCATGTTGGCTGGT 61.042 50.000 0.00 0.00 34.04 4.00
1301 2027 1.042003 TGTGTGCATGTTGGCTGGTT 61.042 50.000 0.00 0.00 34.04 3.67
1309 2035 1.059584 TGTTGGCTGGTTCAGGAGGA 61.060 55.000 0.00 0.00 31.21 3.71
1548 2275 0.939106 GTGATTTGTTTTGCCGCGCT 60.939 50.000 5.56 0.00 0.00 5.92
1581 2317 2.653584 GCATATCACAAATCGATTGCGC 59.346 45.455 12.25 0.00 43.13 6.09
1590 2326 0.378257 ATCGATTGCGCATGGTGAAC 59.622 50.000 12.75 0.00 37.46 3.18
1611 2347 0.311790 ATGTTTGGCTCTGTTGTGCG 59.688 50.000 0.00 0.00 33.89 5.34
1625 2361 0.391793 TGTGCGGTGTGAAGTTGACA 60.392 50.000 0.00 0.00 0.00 3.58
1681 2420 0.389166 GGGTGCTGTCTCTGAACTCG 60.389 60.000 0.00 0.00 0.00 4.18
1747 2486 0.298707 CGTTGCTCGATGGATGTTCG 59.701 55.000 0.00 0.00 42.86 3.95
1767 2506 0.115745 AGTTTGGAGGTAGGTCCGGA 59.884 55.000 0.00 0.00 39.81 5.14
1775 2514 1.558294 AGGTAGGTCCGGATTGGTTTC 59.442 52.381 7.81 0.00 41.99 2.78
1805 2544 8.506437 TCAGATTTGATTTTGTACAGTCATCAC 58.494 33.333 11.32 3.89 0.00 3.06
1824 2563 2.095567 CACCTCCTTTGATTGAACAGCG 60.096 50.000 0.00 0.00 0.00 5.18
1829 2568 1.463056 CTTTGATTGAACAGCGCCGTA 59.537 47.619 2.29 0.00 0.00 4.02
1938 2677 6.674694 ACATTGCATGATCTTCTGACTAAC 57.325 37.500 0.00 0.00 0.00 2.34
1956 2695 5.479306 ACTAACATACAACACACTAGCTGG 58.521 41.667 0.00 0.00 0.00 4.85
1990 2729 3.265479 AGGCCTTGAGAGTTTCTGCTTAT 59.735 43.478 0.00 0.00 0.00 1.73
1991 2730 3.625313 GGCCTTGAGAGTTTCTGCTTATC 59.375 47.826 0.00 0.00 0.00 1.75
1992 2731 4.256920 GCCTTGAGAGTTTCTGCTTATCA 58.743 43.478 0.00 0.00 0.00 2.15
1993 2732 4.697352 GCCTTGAGAGTTTCTGCTTATCAA 59.303 41.667 0.00 0.00 0.00 2.57
1994 2733 5.391416 GCCTTGAGAGTTTCTGCTTATCAAC 60.391 44.000 0.00 0.00 0.00 3.18
1995 2734 5.702670 CCTTGAGAGTTTCTGCTTATCAACA 59.297 40.000 0.00 0.00 0.00 3.33
1996 2735 6.128336 CCTTGAGAGTTTCTGCTTATCAACAG 60.128 42.308 0.00 0.00 35.15 3.16
1997 2736 5.858381 TGAGAGTTTCTGCTTATCAACAGT 58.142 37.500 0.00 0.00 35.37 3.55
1998 2737 6.993079 TGAGAGTTTCTGCTTATCAACAGTA 58.007 36.000 0.00 0.00 35.37 2.74
1999 2738 7.093354 TGAGAGTTTCTGCTTATCAACAGTAG 58.907 38.462 0.00 0.00 35.37 2.57
2000 2739 5.872070 AGAGTTTCTGCTTATCAACAGTAGC 59.128 40.000 0.00 0.00 35.37 3.58
2001 2740 5.799213 AGTTTCTGCTTATCAACAGTAGCT 58.201 37.500 0.00 0.00 35.37 3.32
2002 2741 6.936279 AGTTTCTGCTTATCAACAGTAGCTA 58.064 36.000 0.00 0.00 35.37 3.32
2003 2742 7.560368 AGTTTCTGCTTATCAACAGTAGCTAT 58.440 34.615 0.00 0.00 35.37 2.97
2004 2743 8.043710 AGTTTCTGCTTATCAACAGTAGCTATT 58.956 33.333 0.00 0.00 35.37 1.73
2005 2744 7.776933 TTCTGCTTATCAACAGTAGCTATTG 57.223 36.000 14.21 14.21 35.37 1.90
2006 2745 5.755375 TCTGCTTATCAACAGTAGCTATTGC 59.245 40.000 15.57 0.58 35.37 3.56
2007 2746 4.816385 TGCTTATCAACAGTAGCTATTGCC 59.184 41.667 15.57 0.00 40.80 4.52
2008 2747 4.084328 GCTTATCAACAGTAGCTATTGCCG 60.084 45.833 15.57 7.53 40.80 5.69
2009 2748 3.543680 ATCAACAGTAGCTATTGCCGT 57.456 42.857 15.57 0.00 40.80 5.68
2010 2749 2.888594 TCAACAGTAGCTATTGCCGTC 58.111 47.619 15.57 0.00 40.80 4.79
2011 2750 1.933853 CAACAGTAGCTATTGCCGTCC 59.066 52.381 15.57 0.00 40.80 4.79
2012 2751 0.464452 ACAGTAGCTATTGCCGTCCC 59.536 55.000 15.57 0.00 40.80 4.46
2013 2752 0.464036 CAGTAGCTATTGCCGTCCCA 59.536 55.000 3.03 0.00 40.80 4.37
2014 2753 1.070758 CAGTAGCTATTGCCGTCCCAT 59.929 52.381 3.03 0.00 40.80 4.00
2015 2754 2.299013 CAGTAGCTATTGCCGTCCCATA 59.701 50.000 3.03 0.00 40.80 2.74
2042 2781 7.865707 ACAGTTGTGTGATTTACTTTGAGATC 58.134 34.615 0.00 0.00 34.75 2.75
2087 2826 4.829064 TTGAACTGACAACTTACATGCC 57.171 40.909 0.00 0.00 0.00 4.40
2106 2845 4.397420 TGCCTTTTATTTGCAGACTCTCA 58.603 39.130 0.00 0.00 0.00 3.27
2115 2854 1.297456 GCAGACTCTCAGCTTGGCAC 61.297 60.000 0.00 0.00 0.00 5.01
2121 2860 2.224719 ACTCTCAGCTTGGCACTTGATT 60.225 45.455 0.00 0.00 0.00 2.57
2136 2875 5.566774 GCACTTGATTTCTCAAAGTTCGATG 59.433 40.000 0.00 0.00 40.78 3.84
2172 2911 2.462456 TGTGTGGTCATCTGCTTCTC 57.538 50.000 0.00 0.00 0.00 2.87
2204 2943 6.659242 TGTCCTCTCTTGAAATGGGTTTTATC 59.341 38.462 0.00 0.00 0.00 1.75
2806 3545 2.373169 AGAGGCTGTCATTCAACAAGGA 59.627 45.455 0.00 0.00 0.00 3.36
3108 3847 2.964740 CTATCATGGTGATAGTGCGGG 58.035 52.381 15.51 0.00 46.92 6.13
3479 4218 0.255318 AAGATCTTGAGCCCTGGCAG 59.745 55.000 7.30 7.75 44.88 4.85
3518 4257 2.322081 CGACGCGGAAACCACCAAT 61.322 57.895 12.47 0.00 0.00 3.16
3603 4342 1.916651 CGAAACAGCTCTCATCAGTCG 59.083 52.381 0.00 0.00 0.00 4.18
3650 4389 5.705905 ACCGGATAAGCTATATTTTCTTGCC 59.294 40.000 9.46 0.00 0.00 4.52
3709 4448 4.343526 TGGCATCCTGTTTGTTGTTACATT 59.656 37.500 0.00 0.00 33.44 2.71
3712 4451 5.175491 GCATCCTGTTTGTTGTTACATTGTG 59.825 40.000 0.00 0.00 33.44 3.33
3717 4456 7.445707 TCCTGTTTGTTGTTACATTGTGCTATA 59.554 33.333 0.00 0.00 33.44 1.31
3722 4461 9.729023 TTTGTTGTTACATTGTGCTATATATGC 57.271 29.630 0.00 0.00 33.44 3.14
3743 4482 6.737720 TGCTGTAGTATTCAGATTCTGGAT 57.262 37.500 12.14 12.14 33.72 3.41
3758 4497 9.956720 CAGATTCTGGATGTTATTTATGGAAAC 57.043 33.333 5.73 0.00 0.00 2.78
3779 4518 2.798976 TTTGCTTCCTCACATGTTGC 57.201 45.000 0.00 0.00 0.00 4.17
3782 4521 0.109412 GCTTCCTCACATGTTGCTGC 60.109 55.000 0.00 0.00 0.00 5.25
3784 4523 1.884579 CTTCCTCACATGTTGCTGCTT 59.115 47.619 0.00 0.00 0.00 3.91
3823 4728 1.228552 ATGCCTTTTGTCCTGCCGT 60.229 52.632 0.00 0.00 0.00 5.68
3827 4732 1.472552 GCCTTTTGTCCTGCCGTTTTT 60.473 47.619 0.00 0.00 0.00 1.94
3828 4733 2.200899 CCTTTTGTCCTGCCGTTTTTG 58.799 47.619 0.00 0.00 0.00 2.44
3830 4735 3.181485 CCTTTTGTCCTGCCGTTTTTGTA 60.181 43.478 0.00 0.00 0.00 2.41
3833 4738 1.950909 TGTCCTGCCGTTTTTGTAAGG 59.049 47.619 0.00 0.00 0.00 2.69
3837 4742 3.120041 CCTGCCGTTTTTGTAAGGTTTG 58.880 45.455 0.00 0.00 0.00 2.93
3840 4745 4.670347 TGCCGTTTTTGTAAGGTTTGTAC 58.330 39.130 0.00 0.00 0.00 2.90
3844 4749 6.553524 CCGTTTTTGTAAGGTTTGTACTGAA 58.446 36.000 0.00 0.00 0.00 3.02
3856 4761 4.497473 TTGTACTGAATTTTCTTGGCCG 57.503 40.909 0.00 0.00 0.00 6.13
3869 4774 3.131478 GGCCGTGCCTGCGTAAAT 61.131 61.111 7.58 0.00 46.69 1.40
3936 4859 1.832912 CCGATCTCCCCCTCCAAAG 59.167 63.158 0.00 0.00 0.00 2.77
3942 4865 0.777446 CTCCCCCTCCAAAGGAACAA 59.223 55.000 0.00 0.00 46.67 2.83
3944 4867 0.187361 CCCCCTCCAAAGGAACAACA 59.813 55.000 0.00 0.00 46.67 3.33
3977 4902 7.999679 GGATAAGTGAAACAAATCCATCATCA 58.000 34.615 0.00 0.00 44.91 3.07
3984 4909 7.434307 GTGAAACAAATCCATCATCATAAGCTG 59.566 37.037 0.00 0.00 36.32 4.24
4048 5075 2.094675 CAAAATGGCGAGTTCCCTCAT 58.905 47.619 0.00 0.00 37.59 2.90
4088 5115 2.023673 CTGAGTGGTTGTGGCAAAAGA 58.976 47.619 0.00 0.00 0.00 2.52
4099 5126 0.040067 GGCAAAAGACAGTTCAGGCG 60.040 55.000 0.00 0.00 0.00 5.52
4102 5129 2.213499 CAAAAGACAGTTCAGGCGTCT 58.787 47.619 0.00 0.00 41.70 4.18
4205 5237 4.581493 CTGACGTGTGATGTTTATGCATC 58.419 43.478 0.19 0.00 43.97 3.91
4206 5238 3.061965 TGACGTGTGATGTTTATGCATCG 59.938 43.478 0.19 0.00 45.98 3.84
4207 5239 2.351418 ACGTGTGATGTTTATGCATCGG 59.649 45.455 0.19 0.00 45.98 4.18
4208 5240 2.607180 CGTGTGATGTTTATGCATCGGA 59.393 45.455 0.19 0.00 45.98 4.55
4209 5241 3.063316 CGTGTGATGTTTATGCATCGGAA 59.937 43.478 0.19 0.00 45.98 4.30
4210 5242 4.436718 CGTGTGATGTTTATGCATCGGAAA 60.437 41.667 0.19 0.00 45.98 3.13
4211 5243 4.793216 GTGTGATGTTTATGCATCGGAAAC 59.207 41.667 14.11 14.11 45.98 2.78
4212 5244 4.457257 TGTGATGTTTATGCATCGGAAACA 59.543 37.500 22.17 22.17 45.98 2.83
4213 5245 4.793216 GTGATGTTTATGCATCGGAAACAC 59.207 41.667 22.31 17.27 45.98 3.32
4214 5246 3.840890 TGTTTATGCATCGGAAACACC 57.159 42.857 18.08 0.00 37.97 4.16
4215 5247 3.149981 TGTTTATGCATCGGAAACACCA 58.850 40.909 18.08 1.53 37.97 4.17
4216 5248 3.570125 TGTTTATGCATCGGAAACACCAA 59.430 39.130 18.08 1.18 37.97 3.67
4217 5249 3.840890 TTATGCATCGGAAACACCAAC 57.159 42.857 0.19 0.00 38.90 3.77
4218 5250 0.521291 ATGCATCGGAAACACCAACG 59.479 50.000 0.00 0.00 38.90 4.10
4219 5251 1.442017 GCATCGGAAACACCAACGC 60.442 57.895 0.00 0.00 38.90 4.84
4220 5252 1.209127 CATCGGAAACACCAACGCC 59.791 57.895 0.00 0.00 38.90 5.68
4221 5253 1.969589 ATCGGAAACACCAACGCCC 60.970 57.895 0.00 0.00 38.90 6.13
4222 5254 2.684192 ATCGGAAACACCAACGCCCA 62.684 55.000 0.00 0.00 38.90 5.36
4223 5255 2.725641 GGAAACACCAACGCCCAC 59.274 61.111 0.00 0.00 38.79 4.61
4224 5256 2.122167 GGAAACACCAACGCCCACA 61.122 57.895 0.00 0.00 38.79 4.17
4225 5257 1.065109 GAAACACCAACGCCCACAC 59.935 57.895 0.00 0.00 0.00 3.82
4226 5258 2.655952 GAAACACCAACGCCCACACG 62.656 60.000 0.00 0.00 39.50 4.49
4238 5270 3.240203 CACACGTGTGGGCGTTAG 58.760 61.111 35.65 12.08 43.83 2.34
4239 5271 2.663852 ACACGTGTGGGCGTTAGC 60.664 61.111 22.71 0.00 43.83 3.09
4249 5281 3.497031 GCGTTAGCCAACTCGCCC 61.497 66.667 0.00 0.00 42.33 6.13
4250 5282 2.047655 CGTTAGCCAACTCGCCCA 60.048 61.111 0.00 0.00 32.09 5.36
4251 5283 2.388232 CGTTAGCCAACTCGCCCAC 61.388 63.158 0.00 0.00 32.09 4.61
4252 5284 1.302192 GTTAGCCAACTCGCCCACA 60.302 57.895 0.00 0.00 0.00 4.17
4253 5285 1.302192 TTAGCCAACTCGCCCACAC 60.302 57.895 0.00 0.00 0.00 3.82
4254 5286 3.583276 TAGCCAACTCGCCCACACG 62.583 63.158 0.00 0.00 0.00 4.49
4257 5289 4.988598 CAACTCGCCCACACGCCT 62.989 66.667 0.00 0.00 0.00 5.52
4258 5290 4.681978 AACTCGCCCACACGCCTC 62.682 66.667 0.00 0.00 0.00 4.70
4265 5297 4.498520 CCACACGCCTCGATCGCT 62.499 66.667 11.09 0.00 0.00 4.93
4266 5298 3.250323 CACACGCCTCGATCGCTG 61.250 66.667 11.09 4.71 0.00 5.18
4267 5299 3.749064 ACACGCCTCGATCGCTGT 61.749 61.111 11.09 2.85 0.00 4.40
4268 5300 2.951745 CACGCCTCGATCGCTGTC 60.952 66.667 11.09 0.00 0.00 3.51
4269 5301 4.194720 ACGCCTCGATCGCTGTCC 62.195 66.667 11.09 0.00 0.00 4.02
4270 5302 4.193334 CGCCTCGATCGCTGTCCA 62.193 66.667 11.09 0.00 0.00 4.02
4271 5303 2.279120 GCCTCGATCGCTGTCCAG 60.279 66.667 11.09 0.79 0.00 3.86
4280 5312 3.123620 GCTGTCCAGCGCCTTCTG 61.124 66.667 2.29 0.00 45.29 3.02
4281 5313 3.123620 CTGTCCAGCGCCTTCTGC 61.124 66.667 2.29 0.00 32.87 4.26
4282 5314 3.889134 CTGTCCAGCGCCTTCTGCA 62.889 63.158 2.29 0.00 41.33 4.41
4283 5315 2.437359 GTCCAGCGCCTTCTGCAT 60.437 61.111 2.29 0.00 41.33 3.96
4284 5316 2.437180 TCCAGCGCCTTCTGCATG 60.437 61.111 2.29 0.00 41.33 4.06
4285 5317 2.437180 CCAGCGCCTTCTGCATGA 60.437 61.111 2.29 0.00 41.33 3.07
4286 5318 1.822613 CCAGCGCCTTCTGCATGAT 60.823 57.895 2.29 0.00 41.33 2.45
4287 5319 1.381928 CCAGCGCCTTCTGCATGATT 61.382 55.000 2.29 0.00 41.33 2.57
4288 5320 0.454600 CAGCGCCTTCTGCATGATTT 59.545 50.000 2.29 0.00 41.33 2.17
4289 5321 1.135199 CAGCGCCTTCTGCATGATTTT 60.135 47.619 2.29 0.00 41.33 1.82
4290 5322 1.547372 AGCGCCTTCTGCATGATTTTT 59.453 42.857 2.29 0.00 41.33 1.94
4291 5323 1.657094 GCGCCTTCTGCATGATTTTTG 59.343 47.619 0.00 0.00 41.33 2.44
4292 5324 2.264813 CGCCTTCTGCATGATTTTTGG 58.735 47.619 0.00 0.00 41.33 3.28
4293 5325 2.094597 CGCCTTCTGCATGATTTTTGGA 60.095 45.455 0.00 0.00 41.33 3.53
4294 5326 3.614630 CGCCTTCTGCATGATTTTTGGAA 60.615 43.478 0.00 0.00 41.33 3.53
4295 5327 4.510571 GCCTTCTGCATGATTTTTGGAAT 58.489 39.130 0.00 0.00 40.77 3.01
4296 5328 4.331717 GCCTTCTGCATGATTTTTGGAATG 59.668 41.667 0.00 0.00 40.77 2.67
4297 5329 5.726397 CCTTCTGCATGATTTTTGGAATGA 58.274 37.500 0.00 0.00 0.00 2.57
4298 5330 6.167685 CCTTCTGCATGATTTTTGGAATGAA 58.832 36.000 0.00 0.00 0.00 2.57
4299 5331 6.651643 CCTTCTGCATGATTTTTGGAATGAAA 59.348 34.615 0.00 0.00 0.00 2.69
4300 5332 7.173562 CCTTCTGCATGATTTTTGGAATGAAAA 59.826 33.333 0.00 0.00 0.00 2.29
4301 5333 7.661127 TCTGCATGATTTTTGGAATGAAAAG 57.339 32.000 0.00 0.00 30.36 2.27
4302 5334 6.651643 TCTGCATGATTTTTGGAATGAAAAGG 59.348 34.615 0.00 0.00 30.36 3.11
4303 5335 5.181622 TGCATGATTTTTGGAATGAAAAGGC 59.818 36.000 0.00 0.00 30.36 4.35
4304 5336 5.413523 GCATGATTTTTGGAATGAAAAGGCT 59.586 36.000 0.00 0.00 30.36 4.58
4305 5337 6.622028 GCATGATTTTTGGAATGAAAAGGCTG 60.622 38.462 0.00 0.00 30.36 4.85
4306 5338 6.172136 TGATTTTTGGAATGAAAAGGCTGA 57.828 33.333 0.00 0.00 30.36 4.26
4307 5339 6.771573 TGATTTTTGGAATGAAAAGGCTGAT 58.228 32.000 0.00 0.00 30.36 2.90
4308 5340 7.225725 TGATTTTTGGAATGAAAAGGCTGATT 58.774 30.769 0.00 0.00 30.36 2.57
4309 5341 7.720515 TGATTTTTGGAATGAAAAGGCTGATTT 59.279 29.630 0.00 0.00 30.36 2.17
4310 5342 7.878547 TTTTTGGAATGAAAAGGCTGATTTT 57.121 28.000 0.00 0.00 35.12 1.82
4311 5343 6.864360 TTTGGAATGAAAAGGCTGATTTTG 57.136 33.333 0.00 0.00 32.62 2.44
4312 5344 5.549742 TGGAATGAAAAGGCTGATTTTGT 57.450 34.783 0.00 0.00 32.62 2.83
4313 5345 5.299148 TGGAATGAAAAGGCTGATTTTGTG 58.701 37.500 0.00 0.00 32.62 3.33
4314 5346 5.163322 TGGAATGAAAAGGCTGATTTTGTGT 60.163 36.000 0.00 0.00 32.62 3.72
4315 5347 5.178067 GGAATGAAAAGGCTGATTTTGTGTG 59.822 40.000 0.00 0.00 32.62 3.82
4316 5348 3.456280 TGAAAAGGCTGATTTTGTGTGC 58.544 40.909 0.00 0.00 32.62 4.57
4317 5349 2.531522 AAAGGCTGATTTTGTGTGCC 57.468 45.000 0.00 0.00 43.52 5.01
4318 5350 1.412079 AAGGCTGATTTTGTGTGCCA 58.588 45.000 0.00 0.00 45.42 4.92
4319 5351 0.675633 AGGCTGATTTTGTGTGCCAC 59.324 50.000 0.00 0.00 45.42 5.01
4320 5352 0.664166 GGCTGATTTTGTGTGCCACG 60.664 55.000 0.00 0.00 42.79 4.94
4321 5353 0.030638 GCTGATTTTGTGTGCCACGT 59.969 50.000 0.00 0.00 37.14 4.49
4322 5354 1.265635 GCTGATTTTGTGTGCCACGTA 59.734 47.619 0.00 0.00 37.14 3.57
4323 5355 2.665519 GCTGATTTTGTGTGCCACGTAG 60.666 50.000 0.00 0.00 37.14 3.51
4324 5356 1.876799 TGATTTTGTGTGCCACGTAGG 59.123 47.619 0.00 0.00 37.14 3.18
4325 5357 2.147958 GATTTTGTGTGCCACGTAGGA 58.852 47.619 8.04 0.00 41.22 2.94
4326 5358 1.301423 TTTTGTGTGCCACGTAGGAC 58.699 50.000 0.00 0.00 41.22 3.85
4327 5359 0.178301 TTTGTGTGCCACGTAGGACA 59.822 50.000 3.90 3.90 41.22 4.02
4328 5360 0.178301 TTGTGTGCCACGTAGGACAA 59.822 50.000 10.20 7.57 41.22 3.18
4329 5361 0.531090 TGTGTGCCACGTAGGACAAC 60.531 55.000 10.20 5.70 41.22 3.32
4330 5362 0.249741 GTGTGCCACGTAGGACAACT 60.250 55.000 10.20 0.00 41.22 3.16
4331 5363 0.032952 TGTGCCACGTAGGACAACTC 59.967 55.000 5.76 0.00 41.22 3.01
4332 5364 1.007336 GTGCCACGTAGGACAACTCG 61.007 60.000 0.00 0.00 41.22 4.18
4333 5365 1.288127 GCCACGTAGGACAACTCGT 59.712 57.895 8.04 0.00 41.22 4.18
4334 5366 1.007336 GCCACGTAGGACAACTCGTG 61.007 60.000 8.04 9.13 43.70 4.35
4335 5367 0.313043 CCACGTAGGACAACTCGTGT 59.687 55.000 13.75 0.00 43.14 4.49
4336 5368 1.405461 CACGTAGGACAACTCGTGTG 58.595 55.000 8.11 0.00 41.96 3.82
4337 5369 1.027357 ACGTAGGACAACTCGTGTGT 58.973 50.000 0.00 0.00 41.96 3.72
4338 5370 1.268896 ACGTAGGACAACTCGTGTGTG 60.269 52.381 0.00 0.00 41.96 3.82
4339 5371 1.268896 CGTAGGACAACTCGTGTGTGT 60.269 52.381 0.00 0.00 41.96 3.72
4340 5372 2.391879 GTAGGACAACTCGTGTGTGTC 58.608 52.381 17.17 17.17 41.96 3.67
4341 5373 0.248907 AGGACAACTCGTGTGTGTCG 60.249 55.000 18.03 0.00 41.96 4.35
4342 5374 0.526954 GGACAACTCGTGTGTGTCGT 60.527 55.000 18.03 3.22 41.96 4.34
4343 5375 0.570734 GACAACTCGTGTGTGTCGTG 59.429 55.000 13.25 1.70 41.96 4.35
4344 5376 0.108992 ACAACTCGTGTGTGTCGTGT 60.109 50.000 0.00 0.00 39.72 4.49
4345 5377 0.297525 CAACTCGTGTGTGTCGTGTG 59.702 55.000 0.00 0.00 35.70 3.82
4346 5378 0.171679 AACTCGTGTGTGTCGTGTGA 59.828 50.000 0.00 0.00 35.70 3.58
4347 5379 0.248498 ACTCGTGTGTGTCGTGTGAG 60.248 55.000 0.00 0.00 34.58 3.51
4348 5380 0.934901 CTCGTGTGTGTCGTGTGAGG 60.935 60.000 0.00 0.00 0.00 3.86
4349 5381 1.949133 CGTGTGTGTCGTGTGAGGG 60.949 63.158 0.00 0.00 0.00 4.30
4350 5382 1.440060 GTGTGTGTCGTGTGAGGGA 59.560 57.895 0.00 0.00 0.00 4.20
4351 5383 0.597637 GTGTGTGTCGTGTGAGGGAG 60.598 60.000 0.00 0.00 0.00 4.30
4352 5384 1.040893 TGTGTGTCGTGTGAGGGAGT 61.041 55.000 0.00 0.00 0.00 3.85
4353 5385 0.104304 GTGTGTCGTGTGAGGGAGTT 59.896 55.000 0.00 0.00 0.00 3.01
4354 5386 0.387929 TGTGTCGTGTGAGGGAGTTC 59.612 55.000 0.00 0.00 0.00 3.01
4355 5387 0.663568 GTGTCGTGTGAGGGAGTTCG 60.664 60.000 0.00 0.00 0.00 3.95
4356 5388 1.733399 GTCGTGTGAGGGAGTTCGC 60.733 63.158 0.00 0.00 0.00 4.70
4357 5389 2.432628 CGTGTGAGGGAGTTCGCC 60.433 66.667 0.00 0.00 0.00 5.54
4358 5390 2.932234 CGTGTGAGGGAGTTCGCCT 61.932 63.158 0.00 0.00 0.00 5.52
4359 5391 1.374758 GTGTGAGGGAGTTCGCCTG 60.375 63.158 0.00 0.00 0.00 4.85
4360 5392 2.435059 GTGAGGGAGTTCGCCTGC 60.435 66.667 0.00 0.00 0.00 4.85
4361 5393 2.922503 TGAGGGAGTTCGCCTGCA 60.923 61.111 0.00 0.00 32.10 4.41
4362 5394 2.435059 GAGGGAGTTCGCCTGCAC 60.435 66.667 0.00 0.00 32.10 4.57
4363 5395 4.379243 AGGGAGTTCGCCTGCACG 62.379 66.667 0.00 0.00 32.10 5.34
4372 5404 4.700365 GCCTGCACGCCGGTTTTC 62.700 66.667 1.90 0.00 0.00 2.29
4373 5405 2.978010 CCTGCACGCCGGTTTTCT 60.978 61.111 1.90 0.00 0.00 2.52
4374 5406 2.556287 CTGCACGCCGGTTTTCTC 59.444 61.111 1.90 0.00 0.00 2.87
4375 5407 1.961277 CTGCACGCCGGTTTTCTCT 60.961 57.895 1.90 0.00 0.00 3.10
4376 5408 1.901650 CTGCACGCCGGTTTTCTCTC 61.902 60.000 1.90 0.00 0.00 3.20
4377 5409 2.677979 GCACGCCGGTTTTCTCTCC 61.678 63.158 1.90 0.00 0.00 3.71
4378 5410 2.048503 ACGCCGGTTTTCTCTCCG 60.049 61.111 1.90 0.00 45.42 4.63
4379 5411 3.488090 CGCCGGTTTTCTCTCCGC 61.488 66.667 1.90 0.00 44.63 5.54
4380 5412 3.488090 GCCGGTTTTCTCTCCGCG 61.488 66.667 1.90 0.00 44.63 6.46
4381 5413 2.813908 CCGGTTTTCTCTCCGCGG 60.814 66.667 22.12 22.12 44.63 6.46
4382 5414 2.048503 CGGTTTTCTCTCCGCGGT 60.049 61.111 27.15 0.00 40.28 5.68
4383 5415 2.092882 CGGTTTTCTCTCCGCGGTC 61.093 63.158 27.15 6.44 40.28 4.79
4384 5416 1.005394 GGTTTTCTCTCCGCGGTCA 60.005 57.895 27.15 11.99 0.00 4.02
4385 5417 0.601841 GGTTTTCTCTCCGCGGTCAA 60.602 55.000 27.15 10.76 0.00 3.18
4386 5418 0.511653 GTTTTCTCTCCGCGGTCAAC 59.488 55.000 27.15 15.12 0.00 3.18
4394 5426 2.735478 CGCGGTCAACGGTTGCTA 60.735 61.111 15.89 0.00 44.51 3.49
4395 5427 2.726691 CGCGGTCAACGGTTGCTAG 61.727 63.158 15.89 9.82 44.51 3.42
4396 5428 1.666872 GCGGTCAACGGTTGCTAGT 60.667 57.895 15.89 0.00 44.51 2.57
4397 5429 1.623973 GCGGTCAACGGTTGCTAGTC 61.624 60.000 15.89 4.19 44.51 2.59
4398 5430 1.342082 CGGTCAACGGTTGCTAGTCG 61.342 60.000 15.89 10.35 39.42 4.18
4399 5431 1.012486 GGTCAACGGTTGCTAGTCGG 61.012 60.000 15.89 0.00 0.00 4.79
4400 5432 1.012486 GTCAACGGTTGCTAGTCGGG 61.012 60.000 15.89 0.00 0.00 5.14
4401 5433 1.740296 CAACGGTTGCTAGTCGGGG 60.740 63.158 8.09 0.00 0.00 5.73
4402 5434 3.600898 AACGGTTGCTAGTCGGGGC 62.601 63.158 0.00 0.00 0.00 5.80
4404 5436 4.078516 GGTTGCTAGTCGGGGCGT 62.079 66.667 0.00 0.00 0.00 5.68
4405 5437 2.813908 GTTGCTAGTCGGGGCGTG 60.814 66.667 0.00 0.00 0.00 5.34
4406 5438 4.752879 TTGCTAGTCGGGGCGTGC 62.753 66.667 0.00 0.00 0.00 5.34
4450 5482 2.972505 CCGCGCACCACTTCTGTT 60.973 61.111 8.75 0.00 0.00 3.16
4451 5483 2.542907 CCGCGCACCACTTCTGTTT 61.543 57.895 8.75 0.00 0.00 2.83
4452 5484 1.082756 CGCGCACCACTTCTGTTTC 60.083 57.895 8.75 0.00 0.00 2.78
4453 5485 1.282875 GCGCACCACTTCTGTTTCC 59.717 57.895 0.30 0.00 0.00 3.13
4454 5486 1.949257 CGCACCACTTCTGTTTCCC 59.051 57.895 0.00 0.00 0.00 3.97
4455 5487 1.515521 CGCACCACTTCTGTTTCCCC 61.516 60.000 0.00 0.00 0.00 4.81
4456 5488 0.467290 GCACCACTTCTGTTTCCCCA 60.467 55.000 0.00 0.00 0.00 4.96
4457 5489 1.823250 GCACCACTTCTGTTTCCCCAT 60.823 52.381 0.00 0.00 0.00 4.00
4458 5490 2.162681 CACCACTTCTGTTTCCCCATC 58.837 52.381 0.00 0.00 0.00 3.51
4459 5491 2.065799 ACCACTTCTGTTTCCCCATCT 58.934 47.619 0.00 0.00 0.00 2.90
4460 5492 2.040412 ACCACTTCTGTTTCCCCATCTC 59.960 50.000 0.00 0.00 0.00 2.75
4461 5493 2.619074 CCACTTCTGTTTCCCCATCTCC 60.619 54.545 0.00 0.00 0.00 3.71
4462 5494 1.636003 ACTTCTGTTTCCCCATCTCCC 59.364 52.381 0.00 0.00 0.00 4.30
4463 5495 1.635487 CTTCTGTTTCCCCATCTCCCA 59.365 52.381 0.00 0.00 0.00 4.37
4464 5496 0.991920 TCTGTTTCCCCATCTCCCAC 59.008 55.000 0.00 0.00 0.00 4.61
4465 5497 0.392998 CTGTTTCCCCATCTCCCACG 60.393 60.000 0.00 0.00 0.00 4.94
4466 5498 0.838554 TGTTTCCCCATCTCCCACGA 60.839 55.000 0.00 0.00 0.00 4.35
4467 5499 0.546598 GTTTCCCCATCTCCCACGAT 59.453 55.000 0.00 0.00 0.00 3.73
4468 5500 1.064685 GTTTCCCCATCTCCCACGATT 60.065 52.381 0.00 0.00 0.00 3.34
4469 5501 2.171870 GTTTCCCCATCTCCCACGATTA 59.828 50.000 0.00 0.00 0.00 1.75
4470 5502 1.420430 TCCCCATCTCCCACGATTAC 58.580 55.000 0.00 0.00 0.00 1.89
4471 5503 0.396811 CCCCATCTCCCACGATTACC 59.603 60.000 0.00 0.00 0.00 2.85
4472 5504 0.396811 CCCATCTCCCACGATTACCC 59.603 60.000 0.00 0.00 0.00 3.69
4473 5505 1.128200 CCATCTCCCACGATTACCCA 58.872 55.000 0.00 0.00 0.00 4.51
4474 5506 1.699634 CCATCTCCCACGATTACCCAT 59.300 52.381 0.00 0.00 0.00 4.00
4475 5507 2.106511 CCATCTCCCACGATTACCCATT 59.893 50.000 0.00 0.00 0.00 3.16
4476 5508 3.403038 CATCTCCCACGATTACCCATTC 58.597 50.000 0.00 0.00 0.00 2.67
4477 5509 2.759355 TCTCCCACGATTACCCATTCT 58.241 47.619 0.00 0.00 0.00 2.40
4478 5510 2.698797 TCTCCCACGATTACCCATTCTC 59.301 50.000 0.00 0.00 0.00 2.87
4479 5511 1.766496 TCCCACGATTACCCATTCTCC 59.234 52.381 0.00 0.00 0.00 3.71
4480 5512 1.540363 CCCACGATTACCCATTCTCCG 60.540 57.143 0.00 0.00 0.00 4.63
4481 5513 1.411246 CCACGATTACCCATTCTCCGA 59.589 52.381 0.00 0.00 0.00 4.55
4482 5514 2.470821 CACGATTACCCATTCTCCGAC 58.529 52.381 0.00 0.00 0.00 4.79
4483 5515 2.100916 CACGATTACCCATTCTCCGACT 59.899 50.000 0.00 0.00 0.00 4.18
4484 5516 2.361438 ACGATTACCCATTCTCCGACTC 59.639 50.000 0.00 0.00 0.00 3.36
4485 5517 2.623889 CGATTACCCATTCTCCGACTCT 59.376 50.000 0.00 0.00 0.00 3.24
4486 5518 3.304794 CGATTACCCATTCTCCGACTCTC 60.305 52.174 0.00 0.00 0.00 3.20
4487 5519 2.068834 TACCCATTCTCCGACTCTCC 57.931 55.000 0.00 0.00 0.00 3.71
4488 5520 0.688087 ACCCATTCTCCGACTCTCCC 60.688 60.000 0.00 0.00 0.00 4.30
4489 5521 0.687757 CCCATTCTCCGACTCTCCCA 60.688 60.000 0.00 0.00 0.00 4.37
4490 5522 0.461961 CCATTCTCCGACTCTCCCAC 59.538 60.000 0.00 0.00 0.00 4.61
4491 5523 1.186200 CATTCTCCGACTCTCCCACA 58.814 55.000 0.00 0.00 0.00 4.17
4492 5524 1.134965 CATTCTCCGACTCTCCCACAC 60.135 57.143 0.00 0.00 0.00 3.82
4493 5525 0.898789 TTCTCCGACTCTCCCACACC 60.899 60.000 0.00 0.00 0.00 4.16
4494 5526 2.283676 TCCGACTCTCCCACACCC 60.284 66.667 0.00 0.00 0.00 4.61
4495 5527 2.603473 CCGACTCTCCCACACCCA 60.603 66.667 0.00 0.00 0.00 4.51
4496 5528 2.214216 CCGACTCTCCCACACCCAA 61.214 63.158 0.00 0.00 0.00 4.12
4497 5529 1.293498 CGACTCTCCCACACCCAAG 59.707 63.158 0.00 0.00 0.00 3.61
4498 5530 1.003233 GACTCTCCCACACCCAAGC 60.003 63.158 0.00 0.00 0.00 4.01
4499 5531 1.462238 ACTCTCCCACACCCAAGCT 60.462 57.895 0.00 0.00 0.00 3.74
4500 5532 1.002868 CTCTCCCACACCCAAGCTG 60.003 63.158 0.00 0.00 0.00 4.24
4501 5533 1.770110 TCTCCCACACCCAAGCTGT 60.770 57.895 0.00 0.00 0.00 4.40
4502 5534 1.302832 CTCCCACACCCAAGCTGTC 60.303 63.158 0.00 0.00 0.00 3.51
4503 5535 2.055689 CTCCCACACCCAAGCTGTCA 62.056 60.000 0.00 0.00 0.00 3.58
4504 5536 1.075482 CCCACACCCAAGCTGTCAT 59.925 57.895 0.00 0.00 0.00 3.06
4505 5537 0.540365 CCCACACCCAAGCTGTCATT 60.540 55.000 0.00 0.00 0.00 2.57
4506 5538 1.331214 CCACACCCAAGCTGTCATTT 58.669 50.000 0.00 0.00 0.00 2.32
4507 5539 1.000060 CCACACCCAAGCTGTCATTTG 60.000 52.381 0.00 0.00 0.00 2.32
4508 5540 0.675633 ACACCCAAGCTGTCATTTGC 59.324 50.000 0.00 0.00 0.00 3.68
4509 5541 0.037975 CACCCAAGCTGTCATTTGCC 60.038 55.000 0.00 0.00 0.00 4.52
4510 5542 0.469705 ACCCAAGCTGTCATTTGCCA 60.470 50.000 0.00 0.00 0.00 4.92
4511 5543 0.899720 CCCAAGCTGTCATTTGCCAT 59.100 50.000 0.00 0.00 0.00 4.40
4512 5544 1.404986 CCCAAGCTGTCATTTGCCATG 60.405 52.381 0.00 0.00 0.00 3.66
4513 5545 1.274167 CCAAGCTGTCATTTGCCATGT 59.726 47.619 0.00 0.00 0.00 3.21
4514 5546 2.289195 CCAAGCTGTCATTTGCCATGTT 60.289 45.455 0.00 0.00 0.00 2.71
4515 5547 3.395639 CAAGCTGTCATTTGCCATGTTT 58.604 40.909 0.00 0.00 0.00 2.83
4516 5548 3.756933 AGCTGTCATTTGCCATGTTTT 57.243 38.095 0.00 0.00 0.00 2.43
4517 5549 4.075963 AGCTGTCATTTGCCATGTTTTT 57.924 36.364 0.00 0.00 0.00 1.94
4518 5550 3.810941 AGCTGTCATTTGCCATGTTTTTG 59.189 39.130 0.00 0.00 0.00 2.44
4519 5551 3.808726 GCTGTCATTTGCCATGTTTTTGA 59.191 39.130 0.00 0.00 0.00 2.69
4520 5552 4.272991 GCTGTCATTTGCCATGTTTTTGAA 59.727 37.500 0.00 0.00 0.00 2.69
4521 5553 5.559417 GCTGTCATTTGCCATGTTTTTGAAG 60.559 40.000 0.00 0.00 0.00 3.02
4522 5554 4.815308 TGTCATTTGCCATGTTTTTGAAGG 59.185 37.500 0.00 0.00 0.00 3.46
4523 5555 4.213906 GTCATTTGCCATGTTTTTGAAGGG 59.786 41.667 0.00 0.00 0.00 3.95
4524 5556 3.922171 TTTGCCATGTTTTTGAAGGGT 57.078 38.095 0.00 0.00 0.00 4.34
4525 5557 5.070981 TCATTTGCCATGTTTTTGAAGGGTA 59.929 36.000 0.00 0.00 0.00 3.69
4526 5558 4.329462 TTGCCATGTTTTTGAAGGGTAC 57.671 40.909 0.00 0.00 0.00 3.34
4527 5559 3.300388 TGCCATGTTTTTGAAGGGTACA 58.700 40.909 0.00 0.00 0.00 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 9.913310 TTGTGATGTTAGGGATTGATACAAATA 57.087 29.630 0.00 0.00 0.00 1.40
31 32 8.821686 TTGTGATGTTAGGGATTGATACAAAT 57.178 30.769 0.00 0.00 0.00 2.32
32 33 8.685427 CATTGTGATGTTAGGGATTGATACAAA 58.315 33.333 0.00 0.00 0.00 2.83
33 34 7.201812 GCATTGTGATGTTAGGGATTGATACAA 60.202 37.037 0.00 0.00 35.63 2.41
34 35 6.262944 GCATTGTGATGTTAGGGATTGATACA 59.737 38.462 0.00 0.00 35.63 2.29
35 36 6.294176 GGCATTGTGATGTTAGGGATTGATAC 60.294 42.308 0.00 0.00 35.63 2.24
36 37 5.769662 GGCATTGTGATGTTAGGGATTGATA 59.230 40.000 0.00 0.00 35.63 2.15
37 38 4.586001 GGCATTGTGATGTTAGGGATTGAT 59.414 41.667 0.00 0.00 35.63 2.57
38 39 3.953612 GGCATTGTGATGTTAGGGATTGA 59.046 43.478 0.00 0.00 35.63 2.57
39 40 3.700539 TGGCATTGTGATGTTAGGGATTG 59.299 43.478 0.00 0.00 35.63 2.67
40 41 3.979911 TGGCATTGTGATGTTAGGGATT 58.020 40.909 0.00 0.00 35.63 3.01
41 42 3.668141 TGGCATTGTGATGTTAGGGAT 57.332 42.857 0.00 0.00 35.63 3.85
42 43 3.448093 TTGGCATTGTGATGTTAGGGA 57.552 42.857 0.00 0.00 35.63 4.20
43 44 4.533919 TTTTGGCATTGTGATGTTAGGG 57.466 40.909 0.00 0.00 35.63 3.53
44 45 4.871557 CCATTTTGGCATTGTGATGTTAGG 59.128 41.667 0.00 0.00 35.63 2.69
45 46 5.722263 TCCATTTTGGCATTGTGATGTTAG 58.278 37.500 0.00 0.00 37.47 2.34
46 47 5.735285 TCCATTTTGGCATTGTGATGTTA 57.265 34.783 0.00 0.00 37.47 2.41
47 48 4.620589 TCCATTTTGGCATTGTGATGTT 57.379 36.364 0.00 0.00 37.47 2.71
48 49 4.223255 TCATCCATTTTGGCATTGTGATGT 59.777 37.500 11.63 0.00 37.47 3.06
49 50 4.760878 TCATCCATTTTGGCATTGTGATG 58.239 39.130 0.00 0.00 37.47 3.07
50 51 4.682320 GCTCATCCATTTTGGCATTGTGAT 60.682 41.667 0.00 0.00 37.47 3.06
51 52 3.368635 GCTCATCCATTTTGGCATTGTGA 60.369 43.478 0.00 0.00 37.47 3.58
52 53 2.933906 GCTCATCCATTTTGGCATTGTG 59.066 45.455 0.00 0.00 37.47 3.33
53 54 2.417651 CGCTCATCCATTTTGGCATTGT 60.418 45.455 0.00 0.00 37.47 2.71
54 55 2.198406 CGCTCATCCATTTTGGCATTG 58.802 47.619 0.00 0.00 37.47 2.82
55 56 1.826720 ACGCTCATCCATTTTGGCATT 59.173 42.857 0.00 0.00 37.47 3.56
56 57 1.477553 ACGCTCATCCATTTTGGCAT 58.522 45.000 0.00 0.00 37.47 4.40
57 58 2.121291 TACGCTCATCCATTTTGGCA 57.879 45.000 0.00 0.00 37.47 4.92
58 59 2.163412 TGTTACGCTCATCCATTTTGGC 59.837 45.455 0.00 0.00 37.47 4.52
59 60 3.427503 GGTGTTACGCTCATCCATTTTGG 60.428 47.826 0.00 0.00 39.43 3.28
60 61 3.727673 CGGTGTTACGCTCATCCATTTTG 60.728 47.826 0.00 0.00 0.00 2.44
61 62 2.418628 CGGTGTTACGCTCATCCATTTT 59.581 45.455 0.00 0.00 0.00 1.82
62 63 2.006888 CGGTGTTACGCTCATCCATTT 58.993 47.619 0.00 0.00 0.00 2.32
63 64 1.651987 CGGTGTTACGCTCATCCATT 58.348 50.000 0.00 0.00 0.00 3.16
64 65 3.362581 CGGTGTTACGCTCATCCAT 57.637 52.632 0.00 0.00 0.00 3.41
65 66 4.902308 CGGTGTTACGCTCATCCA 57.098 55.556 0.00 0.00 0.00 3.41
73 74 1.351707 GATGGCATGCGGTGTTACG 59.648 57.895 12.44 0.00 0.00 3.18
74 75 0.378257 CTGATGGCATGCGGTGTTAC 59.622 55.000 12.44 0.00 0.00 2.50
75 76 0.035534 ACTGATGGCATGCGGTGTTA 60.036 50.000 12.44 0.00 0.00 2.41
81 82 2.067013 CTAGATCACTGATGGCATGCG 58.933 52.381 12.44 0.00 0.00 4.73
108 109 6.650807 CACTTGTTCTCCTCTTACTATTGCAA 59.349 38.462 0.00 0.00 0.00 4.08
109 110 6.166279 CACTTGTTCTCCTCTTACTATTGCA 58.834 40.000 0.00 0.00 0.00 4.08
111 112 6.070767 TCCCACTTGTTCTCCTCTTACTATTG 60.071 42.308 0.00 0.00 0.00 1.90
114 115 5.006896 TCCCACTTGTTCTCCTCTTACTA 57.993 43.478 0.00 0.00 0.00 1.82
115 116 3.858135 TCCCACTTGTTCTCCTCTTACT 58.142 45.455 0.00 0.00 0.00 2.24
116 117 4.618920 TTCCCACTTGTTCTCCTCTTAC 57.381 45.455 0.00 0.00 0.00 2.34
117 118 4.844085 TGATTCCCACTTGTTCTCCTCTTA 59.156 41.667 0.00 0.00 0.00 2.10
132 133 5.774690 GCATCCCTATAAACATTGATTCCCA 59.225 40.000 0.00 0.00 0.00 4.37
140 141 6.119536 TCGTTTGAGCATCCCTATAAACATT 58.880 36.000 0.00 0.00 33.60 2.71
156 157 6.096036 ACTAACAGATGAGACATCGTTTGAG 58.904 40.000 21.76 16.95 32.29 3.02
161 162 4.220821 ACCAACTAACAGATGAGACATCGT 59.779 41.667 0.00 0.00 0.00 3.73
175 176 8.352942 ACAATCAAAGAATCTTCACCAACTAAC 58.647 33.333 0.00 0.00 0.00 2.34
176 177 8.463930 ACAATCAAAGAATCTTCACCAACTAA 57.536 30.769 0.00 0.00 0.00 2.24
210 211 1.289160 ACTTGCATCCCTCCTAGCAA 58.711 50.000 0.00 0.00 43.90 3.91
213 214 5.684704 TCAAATTACTTGCATCCCTCCTAG 58.315 41.667 0.00 0.00 34.76 3.02
221 222 8.761575 TCCAAAATCTTCAAATTACTTGCATC 57.238 30.769 0.00 0.00 34.76 3.91
249 250 5.070770 TGGTTTCCAACATGCACAATATC 57.929 39.130 0.00 0.00 0.00 1.63
344 346 7.047891 GTCCAAAGAAAAAGGGAAAACATTCT 58.952 34.615 0.00 0.00 0.00 2.40
355 357 5.128008 TGTTTAGGTGGTCCAAAGAAAAAGG 59.872 40.000 0.00 0.00 35.89 3.11
356 358 6.215495 TGTTTAGGTGGTCCAAAGAAAAAG 57.785 37.500 0.00 0.00 35.89 2.27
357 359 6.381420 TGATGTTTAGGTGGTCCAAAGAAAAA 59.619 34.615 0.00 0.00 35.89 1.94
361 363 4.104102 AGTGATGTTTAGGTGGTCCAAAGA 59.896 41.667 0.00 0.00 35.89 2.52
362 364 4.398319 AGTGATGTTTAGGTGGTCCAAAG 58.602 43.478 0.00 0.00 35.89 2.77
365 367 2.028476 CGAGTGATGTTTAGGTGGTCCA 60.028 50.000 0.00 0.00 35.89 4.02
371 373 3.079578 TCGAGTCGAGTGATGTTTAGGT 58.920 45.455 12.09 0.00 0.00 3.08
384 386 6.010294 AGTTGATAGAGTTTTTCGAGTCGA 57.990 37.500 12.09 12.09 0.00 4.20
399 401 9.967346 TTGGATAGAATCGACTAAAGTTGATAG 57.033 33.333 12.27 0.00 45.78 2.08
424 426 0.970427 GGATTGGCATCCCACGGTTT 60.970 55.000 0.00 0.00 43.29 3.27
437 439 2.437716 CCGGGACCGTTGGATTGG 60.438 66.667 10.17 0.00 37.81 3.16
452 454 2.550978 AGATAAACAATGCTCGGACCG 58.449 47.619 7.84 7.84 0.00 4.79
454 456 4.192317 AGGAAGATAAACAATGCTCGGAC 58.808 43.478 0.00 0.00 0.00 4.79
463 465 6.180472 GGATTGTGAGGAGGAAGATAAACAA 58.820 40.000 0.00 0.00 0.00 2.83
481 483 1.408822 GCGGGAAAGGAGATGGATTGT 60.409 52.381 0.00 0.00 0.00 2.71
504 506 2.756283 AGGAGGGAGAAGGCGTCG 60.756 66.667 0.00 0.00 0.00 5.12
507 509 2.042435 AGGAGGAGGGAGAAGGCG 60.042 66.667 0.00 0.00 0.00 5.52
515 517 2.586792 CAAAGGCGAGGAGGAGGG 59.413 66.667 0.00 0.00 0.00 4.30
539 541 4.122776 GCGGATATGTATAGATGGCCAAG 58.877 47.826 10.96 0.00 0.00 3.61
541 543 2.434336 GGCGGATATGTATAGATGGCCA 59.566 50.000 8.56 8.56 37.93 5.36
543 545 3.819564 TGGCGGATATGTATAGATGGC 57.180 47.619 0.00 0.00 0.00 4.40
545 547 9.416794 GAAGATAATGGCGGATATGTATAGATG 57.583 37.037 0.00 0.00 0.00 2.90
546 548 8.300286 CGAAGATAATGGCGGATATGTATAGAT 58.700 37.037 0.00 0.00 0.00 1.98
547 549 7.284716 ACGAAGATAATGGCGGATATGTATAGA 59.715 37.037 0.00 0.00 0.00 1.98
548 550 7.426410 ACGAAGATAATGGCGGATATGTATAG 58.574 38.462 0.00 0.00 0.00 1.31
549 551 7.067737 TGACGAAGATAATGGCGGATATGTATA 59.932 37.037 0.00 0.00 0.00 1.47
550 552 6.127451 TGACGAAGATAATGGCGGATATGTAT 60.127 38.462 0.00 0.00 0.00 2.29
551 553 5.184287 TGACGAAGATAATGGCGGATATGTA 59.816 40.000 0.00 0.00 0.00 2.29
552 554 4.021456 TGACGAAGATAATGGCGGATATGT 60.021 41.667 0.00 0.00 0.00 2.29
553 555 4.494484 TGACGAAGATAATGGCGGATATG 58.506 43.478 0.00 0.00 0.00 1.78
554 556 4.801330 TGACGAAGATAATGGCGGATAT 57.199 40.909 0.00 0.00 0.00 1.63
555 557 4.674362 CGATGACGAAGATAATGGCGGATA 60.674 45.833 0.00 0.00 42.66 2.59
556 558 3.589988 GATGACGAAGATAATGGCGGAT 58.410 45.455 0.00 0.00 0.00 4.18
557 559 2.607038 CGATGACGAAGATAATGGCGGA 60.607 50.000 0.00 0.00 42.66 5.54
558 560 1.721389 CGATGACGAAGATAATGGCGG 59.279 52.381 0.00 0.00 42.66 6.13
559 561 2.394708 ACGATGACGAAGATAATGGCG 58.605 47.619 0.00 0.00 42.66 5.69
560 562 2.405357 CGACGATGACGAAGATAATGGC 59.595 50.000 0.00 0.00 42.66 4.40
561 563 2.980476 CCGACGATGACGAAGATAATGG 59.020 50.000 0.00 0.00 42.66 3.16
562 564 3.664486 GTCCGACGATGACGAAGATAATG 59.336 47.826 0.00 0.00 42.66 1.90
563 565 3.886549 GTCCGACGATGACGAAGATAAT 58.113 45.455 0.00 0.00 42.66 1.28
564 566 3.329743 GTCCGACGATGACGAAGATAA 57.670 47.619 0.00 0.00 42.66 1.75
566 568 3.920144 GTCCGACGATGACGAAGAT 57.080 52.632 0.00 0.00 42.66 2.40
572 574 1.731613 TTGTGCGTCCGACGATGAC 60.732 57.895 24.78 16.11 46.05 3.06
581 583 2.607892 GCAGGAGTGTTGTGCGTCC 61.608 63.158 0.00 0.00 0.00 4.79
585 587 1.714899 AACGTGCAGGAGTGTTGTGC 61.715 55.000 14.38 0.00 37.73 4.57
586 588 0.732571 AAACGTGCAGGAGTGTTGTG 59.267 50.000 14.38 0.00 0.00 3.33
596 598 2.465920 GTCTCGCGAAACGTGCAG 59.534 61.111 11.33 0.00 44.19 4.41
600 602 2.049433 CCAGGTCTCGCGAAACGT 60.049 61.111 11.33 6.00 44.19 3.99
609 611 2.914777 GATGTGCTCGGCCAGGTCTC 62.915 65.000 2.24 0.00 0.00 3.36
616 618 3.589881 GCCATGATGTGCTCGGCC 61.590 66.667 0.00 0.00 36.73 6.13
617 619 3.589881 GGCCATGATGTGCTCGGC 61.590 66.667 0.00 0.00 42.21 5.54
623 625 2.896854 CCGGTCGGCCATGATGTG 60.897 66.667 6.96 0.00 34.09 3.21
626 628 3.861797 GTCCCGGTCGGCCATGAT 61.862 66.667 6.96 0.00 34.09 2.45
633 635 3.621892 GAGACAACGTCCCGGTCGG 62.622 68.421 17.92 1.86 36.68 4.79
635 637 0.942884 GTTGAGACAACGTCCCGGTC 60.943 60.000 0.00 0.00 32.18 4.79
638 640 3.534160 CGTTGAGACAACGTCCCG 58.466 61.111 22.91 3.64 38.69 5.14
650 652 6.039047 GTCATACCATTCTACTAGGACGTTGA 59.961 42.308 0.00 0.00 0.00 3.18
651 653 6.207213 GTCATACCATTCTACTAGGACGTTG 58.793 44.000 0.00 0.00 0.00 4.10
652 654 5.301298 GGTCATACCATTCTACTAGGACGTT 59.699 44.000 0.00 0.00 38.42 3.99
653 655 4.826183 GGTCATACCATTCTACTAGGACGT 59.174 45.833 0.00 0.00 38.42 4.34
654 656 4.217983 GGGTCATACCATTCTACTAGGACG 59.782 50.000 0.00 0.00 41.02 4.79
655 657 4.527427 GGGGTCATACCATTCTACTAGGAC 59.473 50.000 0.00 0.00 41.02 3.85
656 658 4.748701 GGGGTCATACCATTCTACTAGGA 58.251 47.826 0.00 0.00 41.02 2.94
657 659 3.510360 CGGGGTCATACCATTCTACTAGG 59.490 52.174 0.00 0.00 41.02 3.02
658 660 3.510360 CCGGGGTCATACCATTCTACTAG 59.490 52.174 0.00 0.00 41.02 2.57
659 661 3.503365 CCGGGGTCATACCATTCTACTA 58.497 50.000 0.00 0.00 41.02 1.82
660 662 2.326428 CCGGGGTCATACCATTCTACT 58.674 52.381 0.00 0.00 41.02 2.57
661 663 1.270678 GCCGGGGTCATACCATTCTAC 60.271 57.143 2.18 0.00 41.02 2.59
662 664 1.053424 GCCGGGGTCATACCATTCTA 58.947 55.000 2.18 0.00 41.02 2.10
663 665 0.694444 AGCCGGGGTCATACCATTCT 60.694 55.000 2.18 0.00 41.02 2.40
664 666 1.053424 TAGCCGGGGTCATACCATTC 58.947 55.000 2.18 0.00 41.02 2.67
672 674 1.209504 CTCAGAATTTAGCCGGGGTCA 59.790 52.381 2.18 0.00 0.00 4.02
678 680 2.359900 AGTTGCCTCAGAATTTAGCCG 58.640 47.619 0.00 0.00 0.00 5.52
679 681 5.186198 TCTAAGTTGCCTCAGAATTTAGCC 58.814 41.667 0.00 0.00 0.00 3.93
690 692 5.105877 GGGTTGGTTATTTCTAAGTTGCCTC 60.106 44.000 0.00 0.00 0.00 4.70
703 705 7.110043 TGTAAAGAAAAACGGGTTGGTTATT 57.890 32.000 0.00 0.00 0.00 1.40
704 706 6.712179 TGTAAAGAAAAACGGGTTGGTTAT 57.288 33.333 0.00 0.00 0.00 1.89
705 707 6.320672 TGATGTAAAGAAAAACGGGTTGGTTA 59.679 34.615 0.00 0.00 0.00 2.85
707 709 4.645588 TGATGTAAAGAAAAACGGGTTGGT 59.354 37.500 0.00 0.00 0.00 3.67
746 1462 1.691434 GAGAGTGGATCATCACCTCCC 59.309 57.143 0.00 0.00 38.34 4.30
747 1463 2.392662 TGAGAGTGGATCATCACCTCC 58.607 52.381 13.09 0.00 38.34 4.30
754 1470 5.549347 GCTATGTTGATGAGAGTGGATCAT 58.451 41.667 0.00 0.00 40.08 2.45
755 1471 4.500375 CGCTATGTTGATGAGAGTGGATCA 60.500 45.833 0.00 0.00 0.00 2.92
756 1472 3.986572 CGCTATGTTGATGAGAGTGGATC 59.013 47.826 0.00 0.00 0.00 3.36
757 1473 3.801638 GCGCTATGTTGATGAGAGTGGAT 60.802 47.826 0.00 0.00 0.00 3.41
758 1474 2.481969 GCGCTATGTTGATGAGAGTGGA 60.482 50.000 0.00 0.00 0.00 4.02
759 1475 1.863454 GCGCTATGTTGATGAGAGTGG 59.137 52.381 0.00 0.00 0.00 4.00
760 1476 1.520174 CGCGCTATGTTGATGAGAGTG 59.480 52.381 5.56 0.00 0.00 3.51
761 1477 1.845266 CGCGCTATGTTGATGAGAGT 58.155 50.000 5.56 0.00 0.00 3.24
762 1478 0.506080 GCGCGCTATGTTGATGAGAG 59.494 55.000 26.67 0.00 0.00 3.20
763 1479 0.103026 AGCGCGCTATGTTGATGAGA 59.897 50.000 35.79 0.00 0.00 3.27
764 1480 0.231534 CAGCGCGCTATGTTGATGAG 59.768 55.000 36.02 13.72 0.00 2.90
765 1481 0.179113 TCAGCGCGCTATGTTGATGA 60.179 50.000 36.02 22.10 0.00 2.92
766 1482 0.652071 TTCAGCGCGCTATGTTGATG 59.348 50.000 36.02 19.94 0.00 3.07
767 1483 0.652592 GTTCAGCGCGCTATGTTGAT 59.347 50.000 36.02 6.28 0.00 2.57
768 1484 1.682867 CGTTCAGCGCGCTATGTTGA 61.683 55.000 36.02 24.50 0.00 3.18
769 1485 1.296145 CGTTCAGCGCGCTATGTTG 60.296 57.895 36.02 22.38 0.00 3.33
770 1486 1.683790 GACGTTCAGCGCGCTATGTT 61.684 55.000 36.02 17.25 46.11 2.71
771 1487 2.126071 ACGTTCAGCGCGCTATGT 60.126 55.556 36.02 27.05 46.11 2.29
772 1488 1.413767 AAGACGTTCAGCGCGCTATG 61.414 55.000 36.02 26.32 46.11 2.23
773 1489 0.736325 AAAGACGTTCAGCGCGCTAT 60.736 50.000 36.02 16.90 46.11 2.97
774 1490 0.942410 AAAAGACGTTCAGCGCGCTA 60.942 50.000 36.02 17.89 46.11 4.26
775 1491 1.772063 AAAAAGACGTTCAGCGCGCT 61.772 50.000 31.32 31.32 46.11 5.92
800 1516 4.214545 ACGCCGTATTTTGTTTTCTCATCA 59.785 37.500 0.00 0.00 0.00 3.07
801 1517 4.553429 CACGCCGTATTTTGTTTTCTCATC 59.447 41.667 0.00 0.00 0.00 2.92
802 1518 4.472286 CACGCCGTATTTTGTTTTCTCAT 58.528 39.130 0.00 0.00 0.00 2.90
803 1519 3.304123 CCACGCCGTATTTTGTTTTCTCA 60.304 43.478 0.00 0.00 0.00 3.27
804 1520 3.231160 CCACGCCGTATTTTGTTTTCTC 58.769 45.455 0.00 0.00 0.00 2.87
805 1521 2.619646 ACCACGCCGTATTTTGTTTTCT 59.380 40.909 0.00 0.00 0.00 2.52
806 1522 2.975193 GACCACGCCGTATTTTGTTTTC 59.025 45.455 0.00 0.00 0.00 2.29
812 1528 0.956902 GGTGGACCACGCCGTATTTT 60.957 55.000 18.40 0.00 40.51 1.82
1210 1932 2.032681 GCCGAAGTGAAGCAGGGT 59.967 61.111 0.00 0.00 0.00 4.34
1254 1980 2.027073 CGTAAGTCAGCAAGCCGCA 61.027 57.895 0.00 0.00 46.13 5.69
1277 2003 1.206610 AGCCAACATGCACACAAACAA 59.793 42.857 0.00 0.00 0.00 2.83
1300 2026 1.536073 CGTCAGCACCTCCTCCTGAA 61.536 60.000 0.00 0.00 37.36 3.02
1301 2027 1.979155 CGTCAGCACCTCCTCCTGA 60.979 63.158 0.00 0.00 33.53 3.86
1548 2275 0.316841 TGATATGCATACAGGCGCGA 59.683 50.000 12.10 0.00 36.28 5.87
1552 2279 4.452114 TCGATTTGTGATATGCATACAGGC 59.548 41.667 8.99 0.77 0.00 4.85
1581 2317 4.012374 AGAGCCAAACATAGTTCACCATG 58.988 43.478 0.00 0.00 0.00 3.66
1590 2326 2.413239 CGCACAACAGAGCCAAACATAG 60.413 50.000 0.00 0.00 0.00 2.23
1611 2347 5.499139 TTTCTGAATGTCAACTTCACACC 57.501 39.130 0.00 0.00 0.00 4.16
1681 2420 2.203126 CCCCTCCGATCAGCAAGC 60.203 66.667 0.00 0.00 0.00 4.01
1709 2448 1.865970 CGCCTTCAGATCAGAGAATGC 59.134 52.381 0.00 4.39 33.74 3.56
1747 2486 0.535797 CCGGACCTACCTCCAAACTC 59.464 60.000 0.00 0.00 36.31 3.01
1767 2506 9.431887 CAAAATCAAATCTGAGATGAAACCAAT 57.568 29.630 0.00 0.00 34.23 3.16
1775 2514 8.724229 TGACTGTACAAAATCAAATCTGAGATG 58.276 33.333 0.00 0.00 34.23 2.90
1798 2537 4.761739 TGTTCAATCAAAGGAGGTGATGAC 59.238 41.667 0.00 0.00 35.87 3.06
1805 2544 1.135575 GCGCTGTTCAATCAAAGGAGG 60.136 52.381 0.00 0.00 0.00 4.30
1866 2605 6.840780 AGCATCATTTGGCTTTAGTTAACT 57.159 33.333 13.68 13.68 36.92 2.24
1867 2606 9.023967 CAATAGCATCATTTGGCTTTAGTTAAC 57.976 33.333 0.00 0.00 41.41 2.01
1868 2607 7.706179 GCAATAGCATCATTTGGCTTTAGTTAA 59.294 33.333 0.00 0.00 41.41 2.01
1869 2608 7.068593 AGCAATAGCATCATTTGGCTTTAGTTA 59.931 33.333 0.00 0.00 45.49 2.24
1870 2609 6.044682 GCAATAGCATCATTTGGCTTTAGTT 58.955 36.000 0.00 0.00 41.41 2.24
1871 2610 5.361857 AGCAATAGCATCATTTGGCTTTAGT 59.638 36.000 0.00 0.00 45.49 2.24
1872 2611 5.839621 AGCAATAGCATCATTTGGCTTTAG 58.160 37.500 0.00 0.00 45.49 1.85
1873 2612 5.857471 AGCAATAGCATCATTTGGCTTTA 57.143 34.783 0.00 0.00 45.49 1.85
1874 2613 4.748277 AGCAATAGCATCATTTGGCTTT 57.252 36.364 0.00 0.00 45.49 3.51
1875 2614 5.537295 TGATAGCAATAGCATCATTTGGCTT 59.463 36.000 0.00 0.00 45.49 4.35
1876 2615 5.074804 TGATAGCAATAGCATCATTTGGCT 58.925 37.500 0.00 0.00 45.49 4.75
1877 2616 5.381174 TGATAGCAATAGCATCATTTGGC 57.619 39.130 0.00 0.00 45.49 4.52
1878 2617 6.978338 AGTTGATAGCAATAGCATCATTTGG 58.022 36.000 0.00 0.00 45.49 3.28
1879 2618 8.350722 AGAAGTTGATAGCAATAGCATCATTTG 58.649 33.333 0.00 0.00 45.49 2.32
1880 2619 8.461249 AGAAGTTGATAGCAATAGCATCATTT 57.539 30.769 0.00 0.00 45.49 2.32
1938 2677 4.177026 GACTCCAGCTAGTGTGTTGTATG 58.823 47.826 0.00 0.00 0.00 2.39
1956 2695 3.566130 AAGGCCTCAGCATTGACTC 57.434 52.632 5.23 0.00 42.43 3.36
1990 2729 2.418197 GGACGGCAATAGCTACTGTTGA 60.418 50.000 3.85 0.00 41.70 3.18
1991 2730 1.933853 GGACGGCAATAGCTACTGTTG 59.066 52.381 3.85 2.74 41.70 3.33
1992 2731 1.134491 GGGACGGCAATAGCTACTGTT 60.134 52.381 3.85 0.00 41.70 3.16
1993 2732 0.464452 GGGACGGCAATAGCTACTGT 59.536 55.000 3.85 0.00 41.70 3.55
1994 2733 0.464036 TGGGACGGCAATAGCTACTG 59.536 55.000 0.00 0.00 41.70 2.74
1995 2734 1.424638 ATGGGACGGCAATAGCTACT 58.575 50.000 0.00 0.00 41.70 2.57
1996 2735 3.396260 TTATGGGACGGCAATAGCTAC 57.604 47.619 0.00 0.00 41.70 3.58
1997 2736 3.134985 TGTTTATGGGACGGCAATAGCTA 59.865 43.478 0.00 0.00 41.70 3.32
1998 2737 2.092646 TGTTTATGGGACGGCAATAGCT 60.093 45.455 0.00 0.00 41.70 3.32
1999 2738 2.290641 CTGTTTATGGGACGGCAATAGC 59.709 50.000 0.00 0.00 41.10 2.97
2000 2739 3.541632 ACTGTTTATGGGACGGCAATAG 58.458 45.455 0.00 0.00 0.00 1.73
2001 2740 3.637911 ACTGTTTATGGGACGGCAATA 57.362 42.857 0.00 0.00 0.00 1.90
2002 2741 2.491693 CAACTGTTTATGGGACGGCAAT 59.508 45.455 0.00 0.00 0.00 3.56
2003 2742 1.883275 CAACTGTTTATGGGACGGCAA 59.117 47.619 0.00 0.00 0.00 4.52
2004 2743 1.202830 ACAACTGTTTATGGGACGGCA 60.203 47.619 0.00 0.00 0.00 5.69
2005 2744 1.199097 CACAACTGTTTATGGGACGGC 59.801 52.381 0.00 0.00 0.00 5.68
2006 2745 2.225491 CACACAACTGTTTATGGGACGG 59.775 50.000 6.53 0.00 0.00 4.79
2007 2746 3.135225 TCACACAACTGTTTATGGGACG 58.865 45.455 3.04 0.00 0.00 4.79
2008 2747 5.705609 AATCACACAACTGTTTATGGGAC 57.294 39.130 8.29 0.00 0.00 4.46
2009 2748 7.001674 AGTAAATCACACAACTGTTTATGGGA 58.998 34.615 8.50 8.50 0.00 4.37
2010 2749 7.214467 AGTAAATCACACAACTGTTTATGGG 57.786 36.000 6.53 2.79 0.00 4.00
2011 2750 8.967218 CAAAGTAAATCACACAACTGTTTATGG 58.033 33.333 6.53 0.00 0.00 2.74
2012 2751 9.729023 TCAAAGTAAATCACACAACTGTTTATG 57.271 29.630 0.00 0.00 0.00 1.90
2013 2752 9.950680 CTCAAAGTAAATCACACAACTGTTTAT 57.049 29.630 0.00 0.00 0.00 1.40
2014 2753 9.168451 TCTCAAAGTAAATCACACAACTGTTTA 57.832 29.630 0.00 0.00 0.00 2.01
2015 2754 8.050778 TCTCAAAGTAAATCACACAACTGTTT 57.949 30.769 0.00 0.00 0.00 2.83
2085 2824 4.673841 GCTGAGAGTCTGCAAATAAAAGGC 60.674 45.833 0.00 0.00 40.47 4.35
2087 2826 5.876612 AGCTGAGAGTCTGCAAATAAAAG 57.123 39.130 0.00 0.00 42.77 2.27
2106 2845 2.867624 TGAGAAATCAAGTGCCAAGCT 58.132 42.857 0.00 0.00 0.00 3.74
2115 2854 6.310197 GGTCATCGAACTTTGAGAAATCAAG 58.690 40.000 0.00 0.00 0.00 3.02
2121 2860 2.370519 TGGGGTCATCGAACTTTGAGAA 59.629 45.455 0.00 0.00 0.00 2.87
2136 2875 0.251341 ACATGGCTGAAACTGGGGTC 60.251 55.000 0.00 0.00 0.00 4.46
2480 3219 8.938883 TCCTGGCTTCTAATTAGAGATAAATGT 58.061 33.333 14.63 0.00 33.21 2.71
2621 3360 4.303794 AGTGTATGATAGCCCTAAACCCA 58.696 43.478 0.00 0.00 0.00 4.51
2864 3603 2.271497 CTGGGAAGGCAGCTCAGG 59.729 66.667 0.00 0.00 0.00 3.86
3108 3847 1.221021 CAGTAAGGGGAGTTCGGGC 59.779 63.158 0.00 0.00 0.00 6.13
3500 4239 2.322081 ATTGGTGGTTTCCGCGTCG 61.322 57.895 4.92 0.00 34.37 5.12
3506 4245 2.586648 ACTCCTCATTGGTGGTTTCC 57.413 50.000 0.00 0.00 37.07 3.13
3513 4252 2.025981 TGCTGCATTACTCCTCATTGGT 60.026 45.455 0.00 0.00 37.07 3.67
3514 4253 2.646930 TGCTGCATTACTCCTCATTGG 58.353 47.619 0.00 0.00 37.10 3.16
3518 4257 3.076621 CAAGTTGCTGCATTACTCCTCA 58.923 45.455 1.84 0.00 0.00 3.86
3603 4342 5.751243 AATACAACAAGAGACCAACACAC 57.249 39.130 0.00 0.00 0.00 3.82
3650 4389 2.614057 GGGCACATGAGGAAAGATAACG 59.386 50.000 0.00 0.00 0.00 3.18
3691 4430 4.400884 AGCACAATGTAACAACAAACAGGA 59.599 37.500 0.00 0.00 0.00 3.86
3709 4448 9.243105 TCTGAATACTACAGCATATATAGCACA 57.757 33.333 9.01 0.00 35.61 4.57
3717 4456 8.427902 TCCAGAATCTGAATACTACAGCATAT 57.572 34.615 12.53 0.00 35.61 1.78
3731 4470 9.919416 TTTCCATAAATAACATCCAGAATCTGA 57.081 29.630 12.53 0.00 32.44 3.27
3758 4497 2.991190 GCAACATGTGAGGAAGCAAATG 59.009 45.455 0.00 0.00 39.03 2.32
3764 4503 1.531423 AGCAGCAACATGTGAGGAAG 58.469 50.000 0.00 0.00 0.00 3.46
3766 4505 1.985473 AAAGCAGCAACATGTGAGGA 58.015 45.000 0.00 0.00 0.00 3.71
3767 4506 2.806608 AAAAGCAGCAACATGTGAGG 57.193 45.000 0.00 0.00 0.00 3.86
3788 4527 8.461222 CAAAAGGCATGTGTAGAGAAATATGAA 58.539 33.333 0.00 0.00 0.00 2.57
3791 4530 7.067494 GGACAAAAGGCATGTGTAGAGAAATAT 59.933 37.037 0.00 0.00 0.00 1.28
3803 4708 1.526575 CGGCAGGACAAAAGGCATGT 61.527 55.000 0.00 0.00 0.00 3.21
3806 4711 1.040339 AAACGGCAGGACAAAAGGCA 61.040 50.000 0.00 0.00 0.00 4.75
3827 4732 8.410141 CCAAGAAAATTCAGTACAAACCTTACA 58.590 33.333 0.00 0.00 0.00 2.41
3828 4733 7.381408 GCCAAGAAAATTCAGTACAAACCTTAC 59.619 37.037 0.00 0.00 0.00 2.34
3830 4735 6.280643 GCCAAGAAAATTCAGTACAAACCTT 58.719 36.000 0.00 0.00 0.00 3.50
3833 4738 4.679654 CGGCCAAGAAAATTCAGTACAAAC 59.320 41.667 2.24 0.00 0.00 2.93
3837 4742 3.821841 CACGGCCAAGAAAATTCAGTAC 58.178 45.455 2.24 0.00 0.00 2.73
3840 4745 1.701704 GCACGGCCAAGAAAATTCAG 58.298 50.000 2.24 0.00 0.00 3.02
3919 4833 0.691078 TCCTTTGGAGGGGGAGATCG 60.691 60.000 0.00 0.00 43.72 3.69
3925 4839 0.187361 TGTTGTTCCTTTGGAGGGGG 59.813 55.000 0.00 0.00 43.72 5.40
3936 4859 8.450578 TCACTTATCCATAATGATGTTGTTCC 57.549 34.615 0.00 0.00 0.00 3.62
4048 5075 3.004419 CAGAACACAGGTTACGTGAGAGA 59.996 47.826 12.17 0.00 37.36 3.10
4088 5115 2.755650 CAAGTTAGACGCCTGAACTGT 58.244 47.619 0.00 0.00 33.75 3.55
4099 5126 4.508124 CGTGGATGATTAGGCAAGTTAGAC 59.492 45.833 0.00 0.00 0.00 2.59
4102 5129 4.746535 TCGTGGATGATTAGGCAAGTTA 57.253 40.909 0.00 0.00 0.00 2.24
4205 5237 2.902846 TGGGCGTTGGTGTTTCCG 60.903 61.111 0.00 0.00 39.52 4.30
4206 5238 2.122167 TGTGGGCGTTGGTGTTTCC 61.122 57.895 0.00 0.00 0.00 3.13
4207 5239 1.065109 GTGTGGGCGTTGGTGTTTC 59.935 57.895 0.00 0.00 0.00 2.78
4208 5240 2.766400 CGTGTGGGCGTTGGTGTTT 61.766 57.895 0.00 0.00 0.00 2.83
4209 5241 3.206246 CGTGTGGGCGTTGGTGTT 61.206 61.111 0.00 0.00 0.00 3.32
4210 5242 4.476752 ACGTGTGGGCGTTGGTGT 62.477 61.111 0.00 0.00 43.04 4.16
4211 5243 3.947841 CACGTGTGGGCGTTGGTG 61.948 66.667 7.58 0.00 43.83 4.17
4212 5244 4.476752 ACACGTGTGGGCGTTGGT 62.477 61.111 22.71 0.00 43.83 3.67
4213 5245 3.947841 CACACGTGTGGGCGTTGG 61.948 66.667 35.65 12.08 43.83 3.77
4233 5265 2.047655 TGGGCGAGTTGGCTAACG 60.048 61.111 7.35 0.00 44.11 3.18
4234 5266 1.302192 TGTGGGCGAGTTGGCTAAC 60.302 57.895 4.51 4.51 44.11 2.34
4235 5267 1.302192 GTGTGGGCGAGTTGGCTAA 60.302 57.895 3.60 0.00 44.11 3.09
4236 5268 2.345991 GTGTGGGCGAGTTGGCTA 59.654 61.111 3.60 0.00 44.11 3.93
4237 5269 4.988598 CGTGTGGGCGAGTTGGCT 62.989 66.667 3.60 0.00 44.11 4.75
4248 5280 4.498520 AGCGATCGAGGCGTGTGG 62.499 66.667 21.57 0.00 35.00 4.17
4249 5281 3.250323 CAGCGATCGAGGCGTGTG 61.250 66.667 21.57 0.00 35.00 3.82
4250 5282 3.685214 GACAGCGATCGAGGCGTGT 62.685 63.158 21.57 12.75 35.00 4.49
4251 5283 2.951745 GACAGCGATCGAGGCGTG 60.952 66.667 21.57 9.57 35.00 5.34
4252 5284 4.194720 GGACAGCGATCGAGGCGT 62.195 66.667 21.57 9.10 35.00 5.68
4253 5285 4.193334 TGGACAGCGATCGAGGCG 62.193 66.667 21.57 5.62 35.00 5.52
4254 5286 2.279120 CTGGACAGCGATCGAGGC 60.279 66.667 21.57 12.57 0.00 4.70
4255 5287 2.279120 GCTGGACAGCGATCGAGG 60.279 66.667 21.57 12.19 45.29 4.63
4264 5296 3.123620 GCAGAAGGCGCTGGACAG 61.124 66.667 7.64 0.00 36.41 3.51
4273 5305 3.598019 TCCAAAAATCATGCAGAAGGC 57.402 42.857 0.00 0.00 45.13 4.35
4274 5306 5.726397 TCATTCCAAAAATCATGCAGAAGG 58.274 37.500 0.00 0.00 0.00 3.46
4275 5307 7.661127 TTTCATTCCAAAAATCATGCAGAAG 57.339 32.000 0.00 0.00 0.00 2.85
4276 5308 7.173562 CCTTTTCATTCCAAAAATCATGCAGAA 59.826 33.333 0.00 0.00 0.00 3.02
4277 5309 6.651643 CCTTTTCATTCCAAAAATCATGCAGA 59.348 34.615 0.00 0.00 0.00 4.26
4278 5310 6.622028 GCCTTTTCATTCCAAAAATCATGCAG 60.622 38.462 0.00 0.00 0.00 4.41
4279 5311 5.181622 GCCTTTTCATTCCAAAAATCATGCA 59.818 36.000 0.00 0.00 0.00 3.96
4280 5312 5.413523 AGCCTTTTCATTCCAAAAATCATGC 59.586 36.000 0.00 0.00 0.00 4.06
4281 5313 6.651643 TCAGCCTTTTCATTCCAAAAATCATG 59.348 34.615 0.00 0.00 0.00 3.07
4282 5314 6.771573 TCAGCCTTTTCATTCCAAAAATCAT 58.228 32.000 0.00 0.00 0.00 2.45
4283 5315 6.172136 TCAGCCTTTTCATTCCAAAAATCA 57.828 33.333 0.00 0.00 0.00 2.57
4284 5316 7.677454 AATCAGCCTTTTCATTCCAAAAATC 57.323 32.000 0.00 0.00 0.00 2.17
4285 5317 8.354426 CAAAATCAGCCTTTTCATTCCAAAAAT 58.646 29.630 0.00 0.00 0.00 1.82
4286 5318 7.338957 ACAAAATCAGCCTTTTCATTCCAAAAA 59.661 29.630 0.00 0.00 0.00 1.94
4287 5319 6.827762 ACAAAATCAGCCTTTTCATTCCAAAA 59.172 30.769 0.00 0.00 0.00 2.44
4288 5320 6.260493 CACAAAATCAGCCTTTTCATTCCAAA 59.740 34.615 0.00 0.00 0.00 3.28
4289 5321 5.759273 CACAAAATCAGCCTTTTCATTCCAA 59.241 36.000 0.00 0.00 0.00 3.53
4290 5322 5.163322 ACACAAAATCAGCCTTTTCATTCCA 60.163 36.000 0.00 0.00 0.00 3.53
4291 5323 5.178067 CACACAAAATCAGCCTTTTCATTCC 59.822 40.000 0.00 0.00 0.00 3.01
4292 5324 5.333568 GCACACAAAATCAGCCTTTTCATTC 60.334 40.000 0.00 0.00 0.00 2.67
4293 5325 4.512571 GCACACAAAATCAGCCTTTTCATT 59.487 37.500 0.00 0.00 0.00 2.57
4294 5326 4.060205 GCACACAAAATCAGCCTTTTCAT 58.940 39.130 0.00 0.00 0.00 2.57
4295 5327 3.456280 GCACACAAAATCAGCCTTTTCA 58.544 40.909 0.00 0.00 0.00 2.69
4296 5328 2.802247 GGCACACAAAATCAGCCTTTTC 59.198 45.455 0.00 0.00 42.01 2.29
4297 5329 2.170187 TGGCACACAAAATCAGCCTTTT 59.830 40.909 0.00 0.00 45.42 2.27
4298 5330 1.761784 TGGCACACAAAATCAGCCTTT 59.238 42.857 0.00 0.00 45.42 3.11
4299 5331 1.412079 TGGCACACAAAATCAGCCTT 58.588 45.000 0.00 0.00 45.42 4.35
4300 5332 3.130264 TGGCACACAAAATCAGCCT 57.870 47.368 0.00 0.00 45.42 4.58
4312 5344 0.032952 GAGTTGTCCTACGTGGCACA 59.967 55.000 19.09 0.00 35.26 4.57
4313 5345 1.007336 CGAGTTGTCCTACGTGGCAC 61.007 60.000 7.79 7.79 35.26 5.01
4314 5346 1.287815 CGAGTTGTCCTACGTGGCA 59.712 57.895 0.00 0.00 35.26 4.92
4315 5347 1.288127 ACGAGTTGTCCTACGTGGC 59.712 57.895 0.00 0.00 37.58 5.01
4318 5350 1.027357 ACACACGAGTTGTCCTACGT 58.973 50.000 0.00 0.00 35.67 3.57
4319 5351 1.268896 ACACACACGAGTTGTCCTACG 60.269 52.381 0.00 0.00 35.67 3.51
4320 5352 2.391879 GACACACACGAGTTGTCCTAC 58.608 52.381 13.26 0.00 35.67 3.18
4321 5353 1.002142 CGACACACACGAGTTGTCCTA 60.002 52.381 16.27 0.00 35.67 2.94
4322 5354 0.248907 CGACACACACGAGTTGTCCT 60.249 55.000 16.27 0.00 35.67 3.85
4323 5355 0.526954 ACGACACACACGAGTTGTCC 60.527 55.000 16.27 5.78 35.67 4.02
4324 5356 0.570734 CACGACACACACGAGTTGTC 59.429 55.000 13.85 13.85 35.67 3.18
4325 5357 0.108992 ACACGACACACACGAGTTGT 60.109 50.000 0.00 0.00 39.97 3.32
4326 5358 0.297525 CACACGACACACACGAGTTG 59.702 55.000 0.00 0.00 33.07 3.16
4327 5359 0.171679 TCACACGACACACACGAGTT 59.828 50.000 0.00 0.00 33.07 3.01
4328 5360 0.248498 CTCACACGACACACACGAGT 60.248 55.000 0.00 0.00 35.32 4.18
4329 5361 0.934901 CCTCACACGACACACACGAG 60.935 60.000 0.00 0.00 34.70 4.18
4330 5362 1.065109 CCTCACACGACACACACGA 59.935 57.895 0.00 0.00 34.70 4.35
4331 5363 1.949133 CCCTCACACGACACACACG 60.949 63.158 0.00 0.00 0.00 4.49
4332 5364 0.597637 CTCCCTCACACGACACACAC 60.598 60.000 0.00 0.00 0.00 3.82
4333 5365 1.040893 ACTCCCTCACACGACACACA 61.041 55.000 0.00 0.00 0.00 3.72
4334 5366 0.104304 AACTCCCTCACACGACACAC 59.896 55.000 0.00 0.00 0.00 3.82
4335 5367 0.387929 GAACTCCCTCACACGACACA 59.612 55.000 0.00 0.00 0.00 3.72
4336 5368 0.663568 CGAACTCCCTCACACGACAC 60.664 60.000 0.00 0.00 0.00 3.67
4337 5369 1.658114 CGAACTCCCTCACACGACA 59.342 57.895 0.00 0.00 0.00 4.35
4338 5370 1.733399 GCGAACTCCCTCACACGAC 60.733 63.158 0.00 0.00 0.00 4.34
4339 5371 2.649034 GCGAACTCCCTCACACGA 59.351 61.111 0.00 0.00 0.00 4.35
4340 5372 2.432628 GGCGAACTCCCTCACACG 60.433 66.667 0.00 0.00 0.00 4.49
4341 5373 1.374758 CAGGCGAACTCCCTCACAC 60.375 63.158 0.00 0.00 0.00 3.82
4342 5374 3.059982 CAGGCGAACTCCCTCACA 58.940 61.111 0.00 0.00 0.00 3.58
4343 5375 2.435059 GCAGGCGAACTCCCTCAC 60.435 66.667 0.00 0.00 0.00 3.51
4344 5376 2.922503 TGCAGGCGAACTCCCTCA 60.923 61.111 0.00 0.00 0.00 3.86
4345 5377 2.435059 GTGCAGGCGAACTCCCTC 60.435 66.667 0.00 0.00 0.00 4.30
4346 5378 4.379243 CGTGCAGGCGAACTCCCT 62.379 66.667 0.00 0.00 0.00 4.20
4355 5387 4.700365 GAAAACCGGCGTGCAGGC 62.700 66.667 22.81 22.81 42.76 4.85
4356 5388 2.966309 GAGAAAACCGGCGTGCAGG 61.966 63.158 9.55 9.55 37.31 4.85
4357 5389 1.901650 GAGAGAAAACCGGCGTGCAG 61.902 60.000 6.01 0.00 0.00 4.41
4358 5390 1.959226 GAGAGAAAACCGGCGTGCA 60.959 57.895 6.01 0.00 0.00 4.57
4359 5391 2.677979 GGAGAGAAAACCGGCGTGC 61.678 63.158 6.01 0.00 0.00 5.34
4360 5392 2.380410 CGGAGAGAAAACCGGCGTG 61.380 63.158 6.01 0.00 44.59 5.34
4361 5393 2.048503 CGGAGAGAAAACCGGCGT 60.049 61.111 6.01 0.00 44.59 5.68
4366 5398 0.601841 TTGACCGCGGAGAGAAAACC 60.602 55.000 35.90 9.00 0.00 3.27
4367 5399 0.511653 GTTGACCGCGGAGAGAAAAC 59.488 55.000 35.90 20.37 0.00 2.43
4368 5400 0.942410 CGTTGACCGCGGAGAGAAAA 60.942 55.000 35.90 13.13 0.00 2.29
4369 5401 1.372499 CGTTGACCGCGGAGAGAAA 60.372 57.895 35.90 14.98 0.00 2.52
4370 5402 2.257371 CGTTGACCGCGGAGAGAA 59.743 61.111 35.90 15.23 0.00 2.87
4377 5409 2.726691 CTAGCAACCGTTGACCGCG 61.727 63.158 15.63 0.00 34.38 6.46
4378 5410 1.623973 GACTAGCAACCGTTGACCGC 61.624 60.000 15.63 0.00 34.38 5.68
4379 5411 1.342082 CGACTAGCAACCGTTGACCG 61.342 60.000 15.63 6.20 0.00 4.79
4380 5412 1.012486 CCGACTAGCAACCGTTGACC 61.012 60.000 15.63 0.00 0.00 4.02
4381 5413 1.012486 CCCGACTAGCAACCGTTGAC 61.012 60.000 15.63 6.52 0.00 3.18
4382 5414 1.290955 CCCGACTAGCAACCGTTGA 59.709 57.895 15.63 0.00 0.00 3.18
4383 5415 1.740296 CCCCGACTAGCAACCGTTG 60.740 63.158 6.91 6.91 0.00 4.10
4384 5416 2.660802 CCCCGACTAGCAACCGTT 59.339 61.111 0.00 0.00 0.00 4.44
4385 5417 4.078516 GCCCCGACTAGCAACCGT 62.079 66.667 0.00 0.00 0.00 4.83
4387 5419 4.078516 ACGCCCCGACTAGCAACC 62.079 66.667 0.00 0.00 0.00 3.77
4388 5420 2.813908 CACGCCCCGACTAGCAAC 60.814 66.667 0.00 0.00 0.00 4.17
4389 5421 4.752879 GCACGCCCCGACTAGCAA 62.753 66.667 0.00 0.00 0.00 3.91
4433 5465 2.443957 GAAACAGAAGTGGTGCGCGG 62.444 60.000 8.83 0.00 0.00 6.46
4434 5466 1.082756 GAAACAGAAGTGGTGCGCG 60.083 57.895 0.00 0.00 0.00 6.86
4435 5467 1.282875 GGAAACAGAAGTGGTGCGC 59.717 57.895 0.00 0.00 0.00 6.09
4436 5468 1.515521 GGGGAAACAGAAGTGGTGCG 61.516 60.000 0.00 0.00 0.00 5.34
4437 5469 0.467290 TGGGGAAACAGAAGTGGTGC 60.467 55.000 0.00 0.00 0.00 5.01
4438 5470 2.162681 GATGGGGAAACAGAAGTGGTG 58.837 52.381 0.00 0.00 0.00 4.17
4439 5471 2.040412 GAGATGGGGAAACAGAAGTGGT 59.960 50.000 0.00 0.00 0.00 4.16
4440 5472 2.619074 GGAGATGGGGAAACAGAAGTGG 60.619 54.545 0.00 0.00 0.00 4.00
4441 5473 2.619074 GGGAGATGGGGAAACAGAAGTG 60.619 54.545 0.00 0.00 0.00 3.16
4442 5474 1.636003 GGGAGATGGGGAAACAGAAGT 59.364 52.381 0.00 0.00 0.00 3.01
4443 5475 1.635487 TGGGAGATGGGGAAACAGAAG 59.365 52.381 0.00 0.00 0.00 2.85
4444 5476 1.354368 GTGGGAGATGGGGAAACAGAA 59.646 52.381 0.00 0.00 0.00 3.02
4445 5477 0.991920 GTGGGAGATGGGGAAACAGA 59.008 55.000 0.00 0.00 0.00 3.41
4446 5478 0.392998 CGTGGGAGATGGGGAAACAG 60.393 60.000 0.00 0.00 0.00 3.16
4447 5479 0.838554 TCGTGGGAGATGGGGAAACA 60.839 55.000 0.00 0.00 0.00 2.83
4448 5480 0.546598 ATCGTGGGAGATGGGGAAAC 59.453 55.000 0.00 0.00 0.00 2.78
4449 5481 1.295020 AATCGTGGGAGATGGGGAAA 58.705 50.000 0.00 0.00 0.00 3.13
4450 5482 1.766496 GTAATCGTGGGAGATGGGGAA 59.234 52.381 0.00 0.00 0.00 3.97
4451 5483 1.420430 GTAATCGTGGGAGATGGGGA 58.580 55.000 0.00 0.00 0.00 4.81
4452 5484 0.396811 GGTAATCGTGGGAGATGGGG 59.603 60.000 0.00 0.00 0.00 4.96
4453 5485 0.396811 GGGTAATCGTGGGAGATGGG 59.603 60.000 0.00 0.00 0.00 4.00
4454 5486 1.128200 TGGGTAATCGTGGGAGATGG 58.872 55.000 0.00 0.00 0.00 3.51
4455 5487 3.071602 AGAATGGGTAATCGTGGGAGATG 59.928 47.826 0.00 0.00 0.00 2.90
4456 5488 3.318313 AGAATGGGTAATCGTGGGAGAT 58.682 45.455 0.00 0.00 0.00 2.75
4457 5489 2.698797 GAGAATGGGTAATCGTGGGAGA 59.301 50.000 0.00 0.00 0.00 3.71
4458 5490 2.224305 GGAGAATGGGTAATCGTGGGAG 60.224 54.545 0.00 0.00 0.00 4.30
4459 5491 1.766496 GGAGAATGGGTAATCGTGGGA 59.234 52.381 0.00 0.00 0.00 4.37
4460 5492 1.540363 CGGAGAATGGGTAATCGTGGG 60.540 57.143 0.00 0.00 0.00 4.61
4461 5493 1.411246 TCGGAGAATGGGTAATCGTGG 59.589 52.381 0.00 0.00 0.00 4.94
4462 5494 2.100916 AGTCGGAGAATGGGTAATCGTG 59.899 50.000 0.00 0.00 39.69 4.35
4463 5495 2.361438 GAGTCGGAGAATGGGTAATCGT 59.639 50.000 0.00 0.00 39.69 3.73
4464 5496 2.623889 AGAGTCGGAGAATGGGTAATCG 59.376 50.000 0.00 0.00 39.69 3.34
4465 5497 3.006003 GGAGAGTCGGAGAATGGGTAATC 59.994 52.174 0.00 0.00 39.69 1.75
4466 5498 2.966516 GGAGAGTCGGAGAATGGGTAAT 59.033 50.000 0.00 0.00 39.69 1.89
4467 5499 2.385803 GGAGAGTCGGAGAATGGGTAA 58.614 52.381 0.00 0.00 39.69 2.85
4468 5500 1.411216 GGGAGAGTCGGAGAATGGGTA 60.411 57.143 0.00 0.00 39.69 3.69
4469 5501 0.688087 GGGAGAGTCGGAGAATGGGT 60.688 60.000 0.00 0.00 39.69 4.51
4470 5502 0.687757 TGGGAGAGTCGGAGAATGGG 60.688 60.000 0.00 0.00 39.69 4.00
4471 5503 0.461961 GTGGGAGAGTCGGAGAATGG 59.538 60.000 0.00 0.00 39.69 3.16
4472 5504 1.134965 GTGTGGGAGAGTCGGAGAATG 60.135 57.143 0.00 0.00 39.69 2.67
4473 5505 1.187087 GTGTGGGAGAGTCGGAGAAT 58.813 55.000 0.00 0.00 39.69 2.40
4474 5506 0.898789 GGTGTGGGAGAGTCGGAGAA 60.899 60.000 0.00 0.00 39.69 2.87
4475 5507 1.304217 GGTGTGGGAGAGTCGGAGA 60.304 63.158 0.00 0.00 0.00 3.71
4476 5508 2.352032 GGGTGTGGGAGAGTCGGAG 61.352 68.421 0.00 0.00 0.00 4.63
4477 5509 2.283676 GGGTGTGGGAGAGTCGGA 60.284 66.667 0.00 0.00 0.00 4.55
4478 5510 2.172483 CTTGGGTGTGGGAGAGTCGG 62.172 65.000 0.00 0.00 0.00 4.79
4479 5511 1.293498 CTTGGGTGTGGGAGAGTCG 59.707 63.158 0.00 0.00 0.00 4.18
4480 5512 1.003233 GCTTGGGTGTGGGAGAGTC 60.003 63.158 0.00 0.00 0.00 3.36
4481 5513 1.462238 AGCTTGGGTGTGGGAGAGT 60.462 57.895 0.00 0.00 0.00 3.24
4482 5514 1.002868 CAGCTTGGGTGTGGGAGAG 60.003 63.158 0.00 0.00 0.00 3.20
4483 5515 1.768684 GACAGCTTGGGTGTGGGAGA 61.769 60.000 7.10 0.00 44.55 3.71
4484 5516 1.302832 GACAGCTTGGGTGTGGGAG 60.303 63.158 7.10 0.00 44.55 4.30
4485 5517 1.426251 ATGACAGCTTGGGTGTGGGA 61.426 55.000 7.10 0.00 44.55 4.37
4486 5518 0.540365 AATGACAGCTTGGGTGTGGG 60.540 55.000 7.10 0.00 44.55 4.61
4487 5519 1.000060 CAAATGACAGCTTGGGTGTGG 60.000 52.381 7.10 0.00 44.55 4.17
4488 5520 1.603678 GCAAATGACAGCTTGGGTGTG 60.604 52.381 7.10 0.00 44.55 3.82
4490 5522 0.037975 GGCAAATGACAGCTTGGGTG 60.038 55.000 0.00 0.00 37.06 4.61
4491 5523 0.469705 TGGCAAATGACAGCTTGGGT 60.470 50.000 0.00 0.00 0.00 4.51
4492 5524 0.899720 ATGGCAAATGACAGCTTGGG 59.100 50.000 0.00 0.00 35.91 4.12
4493 5525 1.274167 ACATGGCAAATGACAGCTTGG 59.726 47.619 5.69 0.00 35.91 3.61
4494 5526 2.736144 ACATGGCAAATGACAGCTTG 57.264 45.000 5.69 0.00 35.91 4.01
4495 5527 3.756933 AAACATGGCAAATGACAGCTT 57.243 38.095 5.69 0.00 35.91 3.74
4496 5528 3.756933 AAAACATGGCAAATGACAGCT 57.243 38.095 5.69 0.00 35.91 4.24
4497 5529 3.808726 TCAAAAACATGGCAAATGACAGC 59.191 39.130 5.69 0.00 35.91 4.40
4498 5530 5.049954 CCTTCAAAAACATGGCAAATGACAG 60.050 40.000 5.69 0.00 35.91 3.51
4499 5531 4.815308 CCTTCAAAAACATGGCAAATGACA 59.185 37.500 5.69 0.00 37.54 3.58
4500 5532 4.213906 CCCTTCAAAAACATGGCAAATGAC 59.786 41.667 5.69 0.00 0.00 3.06
4501 5533 4.141528 ACCCTTCAAAAACATGGCAAATGA 60.142 37.500 5.69 0.00 0.00 2.57
4502 5534 4.136051 ACCCTTCAAAAACATGGCAAATG 58.864 39.130 0.00 0.00 0.00 2.32
4503 5535 4.436113 ACCCTTCAAAAACATGGCAAAT 57.564 36.364 0.00 0.00 0.00 2.32
4504 5536 3.922171 ACCCTTCAAAAACATGGCAAA 57.078 38.095 0.00 0.00 0.00 3.68
4505 5537 3.706594 TGTACCCTTCAAAAACATGGCAA 59.293 39.130 0.00 0.00 0.00 4.52
4506 5538 3.300388 TGTACCCTTCAAAAACATGGCA 58.700 40.909 0.00 0.00 0.00 4.92


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.