Multiple sequence alignment - TraesCS4D01G326700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G326700 chr4D 100.000 3758 0 0 1 3758 486431130 486434887 0.000000e+00 6940.0
1 TraesCS4D01G326700 chr4D 77.702 1471 274 42 1324 2761 486623186 486621737 0.000000e+00 850.0
2 TraesCS4D01G326700 chr4D 86.023 601 77 6 1 599 496089864 496090459 4.090000e-179 638.0
3 TraesCS4D01G326700 chr5A 94.329 2398 98 13 691 3079 666752542 666750174 0.000000e+00 3640.0
4 TraesCS4D01G326700 chr5A 78.022 1456 275 33 1300 2728 666874101 666872664 0.000000e+00 874.0
5 TraesCS4D01G326700 chr5A 77.663 1455 280 33 1300 2727 667067580 667069016 0.000000e+00 845.0
6 TraesCS4D01G326700 chr5A 97.778 45 1 0 655 699 666755099 666755055 1.120000e-10 78.7
7 TraesCS4D01G326700 chr4B 95.922 2011 69 4 830 2833 620947265 620945261 0.000000e+00 3247.0
8 TraesCS4D01G326700 chr4B 77.519 1459 275 41 1300 2727 621279747 621281183 0.000000e+00 828.0
9 TraesCS4D01G326700 chr4B 85.382 602 77 8 1 599 636039897 636040490 6.900000e-172 614.0
10 TraesCS4D01G326700 chr4B 90.000 200 14 2 657 855 620947614 620947420 1.730000e-63 254.0
11 TraesCS4D01G326700 chr4B 80.714 280 33 11 2880 3157 620468431 620468171 8.230000e-47 198.0
12 TraesCS4D01G326700 chr4B 80.357 280 32 11 2880 3157 620572831 620572573 1.380000e-44 191.0
13 TraesCS4D01G326700 chr4B 90.647 139 11 2 2941 3079 620495139 620495003 2.310000e-42 183.0
14 TraesCS4D01G326700 chr4B 89.928 139 12 2 2941 3079 620527706 620527570 1.070000e-40 178.0
15 TraesCS4D01G326700 chr4B 89.928 139 10 3 2941 3079 620943796 620943662 3.860000e-40 176.0
16 TraesCS4D01G326700 chr4B 80.252 238 36 7 2922 3157 620413263 620413035 6.460000e-38 169.0
17 TraesCS4D01G326700 chr4B 89.313 131 13 1 2949 3079 620564876 620564747 3.000000e-36 163.0
18 TraesCS4D01G326700 chr4B 88.806 134 11 4 2949 3079 620574845 620574713 1.080000e-35 161.0
19 TraesCS4D01G326700 chr4B 97.101 69 2 0 2827 2895 620411766 620411698 2.370000e-22 117.0
20 TraesCS4D01G326700 chr4B 97.101 69 2 0 2827 2895 620564947 620564879 2.370000e-22 117.0
21 TraesCS4D01G326700 chr4B 95.652 69 3 0 2827 2895 620495204 620495136 1.100000e-20 111.0
22 TraesCS4D01G326700 chr4B 94.203 69 4 0 2827 2895 620527771 620527703 5.130000e-19 106.0
23 TraesCS4D01G326700 chr4B 92.754 69 5 0 2827 2895 620574916 620574848 2.390000e-17 100.0
24 TraesCS4D01G326700 chr4B 94.915 59 1 2 2820 2877 620945091 620945034 1.440000e-14 91.6
25 TraesCS4D01G326700 chr2D 99.503 604 2 1 3156 3758 142705450 142706053 0.000000e+00 1098.0
26 TraesCS4D01G326700 chr2D 98.520 608 8 1 3152 3758 288993482 288992875 0.000000e+00 1072.0
27 TraesCS4D01G326700 chr2D 98.967 581 2 2 3156 3735 144458784 144459361 0.000000e+00 1037.0
28 TraesCS4D01G326700 chr2D 97.682 604 13 1 3156 3758 427949054 427948451 0.000000e+00 1037.0
29 TraesCS4D01G326700 chr1D 99.007 604 5 1 3156 3758 408523868 408523265 0.000000e+00 1081.0
30 TraesCS4D01G326700 chr6D 98.843 605 6 1 3155 3758 76076738 76077342 0.000000e+00 1077.0
31 TraesCS4D01G326700 chr3D 98.675 604 7 1 3156 3758 54768690 54769293 0.000000e+00 1070.0
32 TraesCS4D01G326700 chr3D 98.675 604 7 1 3156 3758 382823898 382823295 0.000000e+00 1070.0
33 TraesCS4D01G326700 chr2B 95.033 604 29 1 3156 3758 800715573 800714970 0.000000e+00 948.0
34 TraesCS4D01G326700 chr5D 87.793 598 67 5 1 596 299394670 299394077 0.000000e+00 695.0
35 TraesCS4D01G326700 chr6B 77.910 1177 217 30 1577 2727 56050186 56049027 0.000000e+00 693.0
36 TraesCS4D01G326700 chr7D 87.458 598 69 5 1 596 619640934 619640341 0.000000e+00 684.0
37 TraesCS4D01G326700 chr7D 87.145 599 67 6 1 599 540373963 540374551 0.000000e+00 671.0
38 TraesCS4D01G326700 chr5B 87.273 605 68 6 4 604 65483008 65482409 0.000000e+00 682.0
39 TraesCS4D01G326700 chr5B 86.935 597 71 5 1 595 107367994 107367403 0.000000e+00 664.0
40 TraesCS4D01G326700 chr5B 85.406 603 75 9 1 599 687158475 687157882 6.900000e-172 614.0
41 TraesCS4D01G326700 chr4A 87.270 597 65 4 1 596 9371784 9371198 0.000000e+00 671.0
42 TraesCS4D01G326700 chr6A 77.728 1127 213 25 1623 2727 31369041 31367931 0.000000e+00 656.0
43 TraesCS4D01G326700 chrUn 77.482 1128 214 28 1623 2727 103934271 103933161 1.140000e-179 640.0
44 TraesCS4D01G326700 chr2A 80.882 136 19 6 3024 3157 148659267 148659137 2.390000e-17 100.0
45 TraesCS4D01G326700 chr3B 83.333 84 9 4 848 930 676970810 676970889 5.210000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G326700 chr4D 486431130 486434887 3757 False 6940.00 6940 100.00000 1 3758 1 chr4D.!!$F1 3757
1 TraesCS4D01G326700 chr4D 486621737 486623186 1449 True 850.00 850 77.70200 1324 2761 1 chr4D.!!$R1 1437
2 TraesCS4D01G326700 chr4D 496089864 496090459 595 False 638.00 638 86.02300 1 599 1 chr4D.!!$F2 598
3 TraesCS4D01G326700 chr5A 666750174 666755099 4925 True 1859.35 3640 96.05350 655 3079 2 chr5A.!!$R2 2424
4 TraesCS4D01G326700 chr5A 666872664 666874101 1437 True 874.00 874 78.02200 1300 2728 1 chr5A.!!$R1 1428
5 TraesCS4D01G326700 chr5A 667067580 667069016 1436 False 845.00 845 77.66300 1300 2727 1 chr5A.!!$F1 1427
6 TraesCS4D01G326700 chr4B 620943662 620947614 3952 True 942.15 3247 92.69125 657 3079 4 chr4B.!!$R7 2422
7 TraesCS4D01G326700 chr4B 621279747 621281183 1436 False 828.00 828 77.51900 1300 2727 1 chr4B.!!$F1 1427
8 TraesCS4D01G326700 chr4B 636039897 636040490 593 False 614.00 614 85.38200 1 599 1 chr4B.!!$F2 598
9 TraesCS4D01G326700 chr2D 142705450 142706053 603 False 1098.00 1098 99.50300 3156 3758 1 chr2D.!!$F1 602
10 TraesCS4D01G326700 chr2D 288992875 288993482 607 True 1072.00 1072 98.52000 3152 3758 1 chr2D.!!$R1 606
11 TraesCS4D01G326700 chr2D 144458784 144459361 577 False 1037.00 1037 98.96700 3156 3735 1 chr2D.!!$F2 579
12 TraesCS4D01G326700 chr2D 427948451 427949054 603 True 1037.00 1037 97.68200 3156 3758 1 chr2D.!!$R2 602
13 TraesCS4D01G326700 chr1D 408523265 408523868 603 True 1081.00 1081 99.00700 3156 3758 1 chr1D.!!$R1 602
14 TraesCS4D01G326700 chr6D 76076738 76077342 604 False 1077.00 1077 98.84300 3155 3758 1 chr6D.!!$F1 603
15 TraesCS4D01G326700 chr3D 54768690 54769293 603 False 1070.00 1070 98.67500 3156 3758 1 chr3D.!!$F1 602
16 TraesCS4D01G326700 chr3D 382823295 382823898 603 True 1070.00 1070 98.67500 3156 3758 1 chr3D.!!$R1 602
17 TraesCS4D01G326700 chr2B 800714970 800715573 603 True 948.00 948 95.03300 3156 3758 1 chr2B.!!$R1 602
18 TraesCS4D01G326700 chr5D 299394077 299394670 593 True 695.00 695 87.79300 1 596 1 chr5D.!!$R1 595
19 TraesCS4D01G326700 chr6B 56049027 56050186 1159 True 693.00 693 77.91000 1577 2727 1 chr6B.!!$R1 1150
20 TraesCS4D01G326700 chr7D 619640341 619640934 593 True 684.00 684 87.45800 1 596 1 chr7D.!!$R1 595
21 TraesCS4D01G326700 chr7D 540373963 540374551 588 False 671.00 671 87.14500 1 599 1 chr7D.!!$F1 598
22 TraesCS4D01G326700 chr5B 65482409 65483008 599 True 682.00 682 87.27300 4 604 1 chr5B.!!$R1 600
23 TraesCS4D01G326700 chr5B 107367403 107367994 591 True 664.00 664 86.93500 1 595 1 chr5B.!!$R2 594
24 TraesCS4D01G326700 chr5B 687157882 687158475 593 True 614.00 614 85.40600 1 599 1 chr5B.!!$R3 598
25 TraesCS4D01G326700 chr4A 9371198 9371784 586 True 671.00 671 87.27000 1 596 1 chr4A.!!$R1 595
26 TraesCS4D01G326700 chr6A 31367931 31369041 1110 True 656.00 656 77.72800 1623 2727 1 chr6A.!!$R1 1104
27 TraesCS4D01G326700 chrUn 103933161 103934271 1110 True 640.00 640 77.48200 1623 2727 1 chrUn.!!$R1 1104

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
643 659 0.251916 TTGCCATAGGTCGTTCCCTG 59.748 55.000 0.00 0.00 35.97 4.45 F
647 663 0.464452 CATAGGTCGTTCCCTGGGTC 59.536 60.000 13.56 6.62 35.97 4.46 F
652 668 0.605589 GTCGTTCCCTGGGTCCTTTG 60.606 60.000 13.56 0.00 0.00 2.77 F
732 3269 1.069049 CTTGGTTGCCTGGTTTGGAAG 59.931 52.381 0.00 0.00 0.00 3.46 F
1536 4275 1.134280 CCGCCTCTCCTTGTCATGATT 60.134 52.381 0.00 0.00 0.00 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1514 4253 0.824109 CATGACAAGGAGAGGCGGTA 59.176 55.000 0.0 0.0 0.00 4.02 R
1515 4254 0.904865 TCATGACAAGGAGAGGCGGT 60.905 55.000 0.0 0.0 0.00 5.68 R
1563 4308 1.521681 GTACTCCAGCACGCCATCC 60.522 63.158 0.0 0.0 0.00 3.51 R
2730 5499 0.686789 TGCTTGTGCTCAGCTTAGGA 59.313 50.000 0.0 0.0 40.48 2.94 R
3149 7327 1.246737 GGGACGGAGGAGTACGTTGT 61.247 60.000 0.0 0.0 44.24 3.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
151 157 4.212913 GCGAGGCTGCAGATCCGA 62.213 66.667 20.43 0.00 34.15 4.55
300 308 0.853586 AGGGGAGAGGAGAGGACAGT 60.854 60.000 0.00 0.00 0.00 3.55
317 325 0.679640 AGTGCGAGAGAGGAGAGTGG 60.680 60.000 0.00 0.00 0.00 4.00
354 362 2.186903 CGACGAGGTTGATGGGGG 59.813 66.667 0.00 0.00 0.00 5.40
367 378 0.830023 ATGGGGGTTTTTGTGGGACG 60.830 55.000 0.00 0.00 0.00 4.79
462 474 5.194334 TGCCCCATATTTGAGCTGGATATAT 59.806 40.000 0.00 0.00 31.38 0.86
502 514 1.232119 CGTTTAAGGCCCGTTTGAGT 58.768 50.000 0.00 0.00 0.00 3.41
510 522 1.580942 CCCGTTTGAGTCGTCCGTA 59.419 57.895 0.00 0.00 0.00 4.02
512 524 1.403249 CCCGTTTGAGTCGTCCGTATT 60.403 52.381 0.00 0.00 0.00 1.89
514 527 2.587956 CGTTTGAGTCGTCCGTATTGA 58.412 47.619 0.00 0.00 0.00 2.57
568 584 3.941188 CCGGGCATATGAGGCGGT 61.941 66.667 6.97 0.00 33.42 5.68
577 593 4.127171 GCATATGAGGCGGTTTTAAGAGA 58.873 43.478 6.97 0.00 0.00 3.10
600 616 1.683917 CGGCTGTAGATGCTCTAACCT 59.316 52.381 0.00 0.00 29.58 3.50
604 620 4.500716 GGCTGTAGATGCTCTAACCTCTTC 60.501 50.000 0.00 0.00 29.58 2.87
605 621 4.098654 GCTGTAGATGCTCTAACCTCTTCA 59.901 45.833 0.00 0.00 29.58 3.02
606 622 5.221422 GCTGTAGATGCTCTAACCTCTTCAT 60.221 44.000 0.00 0.00 29.58 2.57
607 623 6.398234 TGTAGATGCTCTAACCTCTTCATC 57.602 41.667 0.00 0.00 29.58 2.92
608 624 5.893824 TGTAGATGCTCTAACCTCTTCATCA 59.106 40.000 0.00 0.00 34.42 3.07
609 625 5.946942 AGATGCTCTAACCTCTTCATCAA 57.053 39.130 0.00 0.00 34.42 2.57
610 626 6.497624 AGATGCTCTAACCTCTTCATCAAT 57.502 37.500 0.00 0.00 34.42 2.57
611 627 6.289834 AGATGCTCTAACCTCTTCATCAATG 58.710 40.000 0.00 0.00 34.42 2.82
612 628 5.426689 TGCTCTAACCTCTTCATCAATGT 57.573 39.130 0.00 0.00 0.00 2.71
613 629 5.181009 TGCTCTAACCTCTTCATCAATGTG 58.819 41.667 0.00 0.00 0.00 3.21
614 630 5.181748 GCTCTAACCTCTTCATCAATGTGT 58.818 41.667 0.00 0.00 0.00 3.72
615 631 5.064452 GCTCTAACCTCTTCATCAATGTGTG 59.936 44.000 0.00 0.00 0.00 3.82
616 632 4.937620 TCTAACCTCTTCATCAATGTGTGC 59.062 41.667 0.00 0.00 0.00 4.57
617 633 2.079158 ACCTCTTCATCAATGTGTGCG 58.921 47.619 0.00 0.00 0.00 5.34
618 634 2.079158 CCTCTTCATCAATGTGTGCGT 58.921 47.619 0.00 0.00 0.00 5.24
619 635 2.094894 CCTCTTCATCAATGTGTGCGTC 59.905 50.000 0.00 0.00 0.00 5.19
620 636 2.738314 CTCTTCATCAATGTGTGCGTCA 59.262 45.455 0.00 0.00 0.00 4.35
621 637 3.337358 TCTTCATCAATGTGTGCGTCAT 58.663 40.909 0.00 0.00 0.00 3.06
622 638 3.752747 TCTTCATCAATGTGTGCGTCATT 59.247 39.130 0.00 0.00 36.16 2.57
623 639 3.745332 TCATCAATGTGTGCGTCATTC 57.255 42.857 0.00 0.00 33.92 2.67
624 640 3.337358 TCATCAATGTGTGCGTCATTCT 58.663 40.909 0.00 0.00 33.92 2.40
625 641 3.752747 TCATCAATGTGTGCGTCATTCTT 59.247 39.130 0.00 0.00 33.92 2.52
626 642 3.541071 TCAATGTGTGCGTCATTCTTG 57.459 42.857 0.00 0.00 33.92 3.02
627 643 1.980844 CAATGTGTGCGTCATTCTTGC 59.019 47.619 0.00 0.00 33.92 4.01
628 644 0.523072 ATGTGTGCGTCATTCTTGCC 59.477 50.000 0.00 0.00 0.00 4.52
629 645 0.817229 TGTGTGCGTCATTCTTGCCA 60.817 50.000 0.00 0.00 0.00 4.92
630 646 0.523072 GTGTGCGTCATTCTTGCCAT 59.477 50.000 0.00 0.00 0.00 4.40
631 647 1.737236 GTGTGCGTCATTCTTGCCATA 59.263 47.619 0.00 0.00 0.00 2.74
632 648 2.009051 TGTGCGTCATTCTTGCCATAG 58.991 47.619 0.00 0.00 0.00 2.23
633 649 1.331756 GTGCGTCATTCTTGCCATAGG 59.668 52.381 0.00 0.00 0.00 2.57
634 650 1.065491 TGCGTCATTCTTGCCATAGGT 60.065 47.619 0.00 0.00 0.00 3.08
635 651 1.599542 GCGTCATTCTTGCCATAGGTC 59.400 52.381 0.00 0.00 0.00 3.85
636 652 1.860950 CGTCATTCTTGCCATAGGTCG 59.139 52.381 0.00 0.00 0.00 4.79
637 653 2.738643 CGTCATTCTTGCCATAGGTCGT 60.739 50.000 0.00 0.00 0.00 4.34
638 654 3.270877 GTCATTCTTGCCATAGGTCGTT 58.729 45.455 0.00 0.00 0.00 3.85
639 655 3.309954 GTCATTCTTGCCATAGGTCGTTC 59.690 47.826 0.00 0.00 0.00 3.95
640 656 2.396590 TTCTTGCCATAGGTCGTTCC 57.603 50.000 0.00 0.00 0.00 3.62
641 657 0.539986 TCTTGCCATAGGTCGTTCCC 59.460 55.000 0.00 0.00 36.75 3.97
642 658 0.541863 CTTGCCATAGGTCGTTCCCT 59.458 55.000 0.00 0.00 38.70 4.20
643 659 0.251916 TTGCCATAGGTCGTTCCCTG 59.748 55.000 0.00 0.00 35.97 4.45
644 660 1.146263 GCCATAGGTCGTTCCCTGG 59.854 63.158 11.30 11.30 40.48 4.45
645 661 1.830145 CCATAGGTCGTTCCCTGGG 59.170 63.158 6.33 6.33 36.46 4.45
646 662 0.981277 CCATAGGTCGTTCCCTGGGT 60.981 60.000 13.56 0.00 36.46 4.51
647 663 0.464452 CATAGGTCGTTCCCTGGGTC 59.536 60.000 13.56 6.62 35.97 4.46
648 664 0.690077 ATAGGTCGTTCCCTGGGTCC 60.690 60.000 13.56 8.76 35.97 4.46
649 665 1.807771 TAGGTCGTTCCCTGGGTCCT 61.808 60.000 13.56 14.89 35.97 3.85
650 666 2.222013 GGTCGTTCCCTGGGTCCTT 61.222 63.158 13.56 0.00 0.00 3.36
651 667 1.759236 GTCGTTCCCTGGGTCCTTT 59.241 57.895 13.56 0.00 0.00 3.11
652 668 0.605589 GTCGTTCCCTGGGTCCTTTG 60.606 60.000 13.56 0.00 0.00 2.77
653 669 1.303317 CGTTCCCTGGGTCCTTTGG 60.303 63.158 13.56 0.00 0.00 3.28
727 3264 3.026707 AGTTACTTGGTTGCCTGGTTT 57.973 42.857 0.00 0.00 0.00 3.27
728 3265 2.693074 AGTTACTTGGTTGCCTGGTTTG 59.307 45.455 0.00 0.00 0.00 2.93
729 3266 1.698506 TACTTGGTTGCCTGGTTTGG 58.301 50.000 0.00 0.00 0.00 3.28
731 3268 1.118838 CTTGGTTGCCTGGTTTGGAA 58.881 50.000 0.00 0.00 0.00 3.53
732 3269 1.069049 CTTGGTTGCCTGGTTTGGAAG 59.931 52.381 0.00 0.00 0.00 3.46
768 3306 7.953493 TGGGTTTTCCTAGTTTGGAAGATAAAT 59.047 33.333 0.00 0.00 45.58 1.40
819 3357 8.870075 AGAGTGGTTTTCTTATCTTAAGCAAT 57.130 30.769 0.00 0.00 30.83 3.56
821 3359 9.914131 GAGTGGTTTTCTTATCTTAAGCAATTT 57.086 29.630 0.00 0.00 30.83 1.82
1024 3747 5.305585 TGGACTTGATTAGATTAATCCGCC 58.694 41.667 11.92 0.55 43.00 6.13
1235 3965 2.202570 GTACTCGTGGCGCGACAT 60.203 61.111 22.20 13.07 45.68 3.06
1527 4266 1.383248 AGCCATACCGCCTCTCCTT 60.383 57.895 0.00 0.00 0.00 3.36
1532 4271 1.414181 CATACCGCCTCTCCTTGTCAT 59.586 52.381 0.00 0.00 0.00 3.06
1536 4275 1.134280 CCGCCTCTCCTTGTCATGATT 60.134 52.381 0.00 0.00 0.00 2.57
1542 4281 2.171237 TCTCCTTGTCATGATTGCCGAT 59.829 45.455 0.00 0.00 0.00 4.18
1545 4284 2.882761 CCTTGTCATGATTGCCGATGAT 59.117 45.455 0.00 0.00 31.40 2.45
1574 4319 4.457496 CGACAGGGATGGCGTGCT 62.457 66.667 0.00 0.00 35.23 4.40
2097 4857 3.181483 GGTATGGACTCACCGAAACGTAT 60.181 47.826 0.00 0.00 42.61 3.06
2730 5499 4.453892 GCCATGGGAAGCCTGCCT 62.454 66.667 15.13 0.00 33.20 4.75
2835 5789 9.366216 CTTCTGTGTTACTGTTATATTGCTACA 57.634 33.333 0.00 0.00 0.00 2.74
2912 7090 2.355009 GCCTTTGGTGCACAAGCG 60.355 61.111 20.43 9.53 46.23 4.68
2932 7110 3.103091 GCCCCGTACACTGATCCCC 62.103 68.421 0.00 0.00 0.00 4.81
2977 7155 8.510243 AATGGATTTTATGGCCTGAAAAATTC 57.490 30.769 18.20 17.18 33.99 2.17
3006 7184 1.338294 TGTGTACAACCGGGCATACTG 60.338 52.381 6.32 0.00 0.00 2.74
3054 7232 5.296531 TCATGAATATACGTGCTTGCATGTT 59.703 36.000 22.90 14.06 34.91 2.71
3106 7284 5.816449 AAAAATGGGCTTGTTTTCTGTTG 57.184 34.783 0.00 0.00 0.00 3.33
3107 7285 4.751767 AAATGGGCTTGTTTTCTGTTGA 57.248 36.364 0.00 0.00 0.00 3.18
3108 7286 4.961438 AATGGGCTTGTTTTCTGTTGAT 57.039 36.364 0.00 0.00 0.00 2.57
3109 7287 4.961438 ATGGGCTTGTTTTCTGTTGATT 57.039 36.364 0.00 0.00 0.00 2.57
3110 7288 4.751767 TGGGCTTGTTTTCTGTTGATTT 57.248 36.364 0.00 0.00 0.00 2.17
3111 7289 5.096443 TGGGCTTGTTTTCTGTTGATTTT 57.904 34.783 0.00 0.00 0.00 1.82
3112 7290 4.874966 TGGGCTTGTTTTCTGTTGATTTTG 59.125 37.500 0.00 0.00 0.00 2.44
3113 7291 4.273235 GGGCTTGTTTTCTGTTGATTTTGG 59.727 41.667 0.00 0.00 0.00 3.28
3114 7292 4.273235 GGCTTGTTTTCTGTTGATTTTGGG 59.727 41.667 0.00 0.00 0.00 4.12
3115 7293 4.875536 GCTTGTTTTCTGTTGATTTTGGGT 59.124 37.500 0.00 0.00 0.00 4.51
3116 7294 5.006649 GCTTGTTTTCTGTTGATTTTGGGTC 59.993 40.000 0.00 0.00 0.00 4.46
3117 7295 5.017294 TGTTTTCTGTTGATTTTGGGTCC 57.983 39.130 0.00 0.00 0.00 4.46
3118 7296 4.048504 GTTTTCTGTTGATTTTGGGTCCG 58.951 43.478 0.00 0.00 0.00 4.79
3119 7297 1.904287 TCTGTTGATTTTGGGTCCGG 58.096 50.000 0.00 0.00 0.00 5.14
3120 7298 1.422024 TCTGTTGATTTTGGGTCCGGA 59.578 47.619 0.00 0.00 0.00 5.14
3121 7299 2.158593 TCTGTTGATTTTGGGTCCGGAA 60.159 45.455 5.23 0.00 0.00 4.30
3122 7300 2.825532 CTGTTGATTTTGGGTCCGGAAT 59.174 45.455 5.23 0.00 0.00 3.01
3123 7301 3.235200 TGTTGATTTTGGGTCCGGAATT 58.765 40.909 5.23 0.00 0.00 2.17
3124 7302 3.643792 TGTTGATTTTGGGTCCGGAATTT 59.356 39.130 5.23 0.00 0.00 1.82
3125 7303 4.101741 TGTTGATTTTGGGTCCGGAATTTT 59.898 37.500 5.23 0.00 0.00 1.82
3126 7304 4.264460 TGATTTTGGGTCCGGAATTTTG 57.736 40.909 5.23 0.00 0.00 2.44
3127 7305 3.643792 TGATTTTGGGTCCGGAATTTTGT 59.356 39.130 5.23 0.00 0.00 2.83
3128 7306 3.737032 TTTTGGGTCCGGAATTTTGTC 57.263 42.857 5.23 0.00 0.00 3.18
3129 7307 2.668144 TTGGGTCCGGAATTTTGTCT 57.332 45.000 5.23 0.00 0.00 3.41
3130 7308 2.668144 TGGGTCCGGAATTTTGTCTT 57.332 45.000 5.23 0.00 0.00 3.01
3131 7309 2.952116 TGGGTCCGGAATTTTGTCTTT 58.048 42.857 5.23 0.00 0.00 2.52
3132 7310 2.888414 TGGGTCCGGAATTTTGTCTTTC 59.112 45.455 5.23 0.00 0.00 2.62
3133 7311 3.154710 GGGTCCGGAATTTTGTCTTTCT 58.845 45.455 5.23 0.00 0.00 2.52
3134 7312 3.572682 GGGTCCGGAATTTTGTCTTTCTT 59.427 43.478 5.23 0.00 0.00 2.52
3135 7313 4.546570 GGTCCGGAATTTTGTCTTTCTTG 58.453 43.478 5.23 0.00 0.00 3.02
3136 7314 4.037565 GGTCCGGAATTTTGTCTTTCTTGT 59.962 41.667 5.23 0.00 0.00 3.16
3137 7315 4.976116 GTCCGGAATTTTGTCTTTCTTGTG 59.024 41.667 5.23 0.00 0.00 3.33
3138 7316 3.735746 CCGGAATTTTGTCTTTCTTGTGC 59.264 43.478 0.00 0.00 0.00 4.57
3139 7317 4.358851 CGGAATTTTGTCTTTCTTGTGCA 58.641 39.130 0.00 0.00 0.00 4.57
3140 7318 4.442073 CGGAATTTTGTCTTTCTTGTGCAG 59.558 41.667 0.00 0.00 0.00 4.41
3141 7319 4.209911 GGAATTTTGTCTTTCTTGTGCAGC 59.790 41.667 0.00 0.00 0.00 5.25
3142 7320 2.473530 TTTGTCTTTCTTGTGCAGCG 57.526 45.000 0.00 0.00 0.00 5.18
3143 7321 1.378531 TTGTCTTTCTTGTGCAGCGT 58.621 45.000 0.00 0.00 0.00 5.07
3144 7322 2.232756 TGTCTTTCTTGTGCAGCGTA 57.767 45.000 0.00 0.00 0.00 4.42
3145 7323 1.864711 TGTCTTTCTTGTGCAGCGTAC 59.135 47.619 0.00 0.00 0.00 3.67
3146 7324 1.864711 GTCTTTCTTGTGCAGCGTACA 59.135 47.619 0.00 0.00 0.00 2.90
3147 7325 2.286833 GTCTTTCTTGTGCAGCGTACAA 59.713 45.455 10.51 10.51 36.66 2.41
3148 7326 3.058914 GTCTTTCTTGTGCAGCGTACAAT 60.059 43.478 11.15 0.00 37.41 2.71
3149 7327 4.151689 GTCTTTCTTGTGCAGCGTACAATA 59.848 41.667 11.15 3.97 37.41 1.90
3150 7328 4.151689 TCTTTCTTGTGCAGCGTACAATAC 59.848 41.667 11.15 0.00 37.41 1.89
3283 7462 0.749091 TCTTCCTCCGCCGTCGATAA 60.749 55.000 0.00 0.00 38.10 1.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
101 104 1.600636 CTTCCCTGTTGGCGCTTCA 60.601 57.895 7.64 3.36 0.00 3.02
130 136 4.521062 ATCTGCAGCCTCGCCGTC 62.521 66.667 9.47 0.00 0.00 4.79
300 308 1.379176 CCCACTCTCCTCTCTCGCA 60.379 63.158 0.00 0.00 0.00 5.10
317 325 0.108281 GTCCGAAACCCTAGCTCACC 60.108 60.000 0.00 0.00 0.00 4.02
345 353 1.062121 TCCCACAAAAACCCCCATCAA 60.062 47.619 0.00 0.00 0.00 2.57
354 362 0.028374 CACGGACGTCCCACAAAAAC 59.972 55.000 28.52 0.58 34.14 2.43
390 401 2.651361 CGTCCGCCTGACAAGTCT 59.349 61.111 1.53 0.00 44.71 3.24
482 494 1.232119 CTCAAACGGGCCTTAAACGT 58.768 50.000 0.84 0.00 43.43 3.99
568 584 5.601662 CATCTACAGCCGGATCTCTTAAAA 58.398 41.667 5.05 0.00 0.00 1.52
600 616 2.765122 TGACGCACACATTGATGAAGA 58.235 42.857 0.00 0.00 0.00 2.87
604 620 3.752412 AGAATGACGCACACATTGATG 57.248 42.857 0.00 0.00 37.96 3.07
605 621 3.671433 GCAAGAATGACGCACACATTGAT 60.671 43.478 0.00 0.00 37.96 2.57
606 622 2.350676 GCAAGAATGACGCACACATTGA 60.351 45.455 0.00 0.00 37.96 2.57
607 623 1.980844 GCAAGAATGACGCACACATTG 59.019 47.619 0.00 2.49 37.96 2.82
608 624 1.068333 GGCAAGAATGACGCACACATT 60.068 47.619 0.00 0.00 40.08 2.71
609 625 0.523072 GGCAAGAATGACGCACACAT 59.477 50.000 0.00 0.00 0.00 3.21
610 626 0.817229 TGGCAAGAATGACGCACACA 60.817 50.000 0.00 0.00 37.40 3.72
611 627 0.523072 ATGGCAAGAATGACGCACAC 59.477 50.000 0.00 0.00 37.40 3.82
612 628 2.009051 CTATGGCAAGAATGACGCACA 58.991 47.619 0.00 0.00 37.40 4.57
613 629 1.331756 CCTATGGCAAGAATGACGCAC 59.668 52.381 0.00 0.00 37.40 5.34
614 630 1.065491 ACCTATGGCAAGAATGACGCA 60.065 47.619 0.00 0.00 37.40 5.24
615 631 1.599542 GACCTATGGCAAGAATGACGC 59.400 52.381 0.00 0.00 37.40 5.19
616 632 1.860950 CGACCTATGGCAAGAATGACG 59.139 52.381 0.00 0.00 37.40 4.35
617 633 2.906354 ACGACCTATGGCAAGAATGAC 58.094 47.619 0.00 0.00 34.00 3.06
618 634 3.531538 GAACGACCTATGGCAAGAATGA 58.468 45.455 0.00 0.00 0.00 2.57
619 635 2.614057 GGAACGACCTATGGCAAGAATG 59.386 50.000 0.00 0.00 35.41 2.67
620 636 2.421529 GGGAACGACCTATGGCAAGAAT 60.422 50.000 0.00 0.00 38.98 2.40
621 637 1.065709 GGGAACGACCTATGGCAAGAA 60.066 52.381 0.00 0.00 38.98 2.52
622 638 0.539986 GGGAACGACCTATGGCAAGA 59.460 55.000 0.00 0.00 38.98 3.02
623 639 0.541863 AGGGAACGACCTATGGCAAG 59.458 55.000 0.00 0.00 39.65 4.01
624 640 0.251916 CAGGGAACGACCTATGGCAA 59.748 55.000 0.00 0.00 39.34 4.52
625 641 1.622607 CCAGGGAACGACCTATGGCA 61.623 60.000 0.00 0.00 39.34 4.92
626 642 1.146263 CCAGGGAACGACCTATGGC 59.854 63.158 0.00 0.00 39.34 4.40
627 643 0.981277 ACCCAGGGAACGACCTATGG 60.981 60.000 14.54 15.00 39.34 2.74
628 644 0.464452 GACCCAGGGAACGACCTATG 59.536 60.000 14.54 0.00 39.34 2.23
629 645 0.690077 GGACCCAGGGAACGACCTAT 60.690 60.000 14.54 0.00 39.34 2.57
630 646 1.305549 GGACCCAGGGAACGACCTA 60.306 63.158 14.54 0.00 39.34 3.08
631 647 2.606826 GGACCCAGGGAACGACCT 60.607 66.667 14.54 0.00 43.08 3.85
632 648 1.775934 AAAGGACCCAGGGAACGACC 61.776 60.000 14.54 7.37 38.08 4.79
633 649 0.605589 CAAAGGACCCAGGGAACGAC 60.606 60.000 14.54 0.00 0.00 4.34
634 650 1.758592 CAAAGGACCCAGGGAACGA 59.241 57.895 14.54 0.00 0.00 3.85
635 651 1.303317 CCAAAGGACCCAGGGAACG 60.303 63.158 14.54 0.00 0.00 3.95
636 652 1.076727 CCCAAAGGACCCAGGGAAC 59.923 63.158 14.54 4.00 44.30 3.62
637 653 2.167037 CCCCAAAGGACCCAGGGAA 61.167 63.158 14.54 0.00 44.30 3.97
638 654 2.534272 CCCCAAAGGACCCAGGGA 60.534 66.667 14.54 0.00 44.30 4.20
639 655 2.863988 ACCCCAAAGGACCCAGGG 60.864 66.667 2.85 2.85 43.88 4.45
640 656 2.440599 CACCCCAAAGGACCCAGG 59.559 66.667 0.00 0.00 39.89 4.45
641 657 2.283173 GCACCCCAAAGGACCCAG 60.283 66.667 0.00 0.00 39.89 4.45
642 658 3.106609 TGCACCCCAAAGGACCCA 61.107 61.111 0.00 0.00 39.89 4.51
643 659 2.600470 GTGCACCCCAAAGGACCC 60.600 66.667 5.22 0.00 39.89 4.46
644 660 2.600470 GGTGCACCCCAAAGGACC 60.600 66.667 26.31 0.00 39.07 4.46
645 661 2.197324 TGGTGCACCCCAAAGGAC 59.803 61.111 32.62 5.17 39.89 3.85
646 662 2.197324 GTGGTGCACCCCAAAGGA 59.803 61.111 32.62 9.77 39.89 3.36
713 3250 1.118838 CTTCCAAACCAGGCAACCAA 58.881 50.000 0.00 0.00 37.17 3.67
727 3264 2.538141 CCCAGCCCCTTGACTTCCA 61.538 63.158 0.00 0.00 0.00 3.53
728 3265 2.081585 AACCCAGCCCCTTGACTTCC 62.082 60.000 0.00 0.00 0.00 3.46
729 3266 0.178961 AAACCCAGCCCCTTGACTTC 60.179 55.000 0.00 0.00 0.00 3.01
731 3268 0.178961 GAAAACCCAGCCCCTTGACT 60.179 55.000 0.00 0.00 0.00 3.41
732 3269 1.185618 GGAAAACCCAGCCCCTTGAC 61.186 60.000 0.00 0.00 34.14 3.18
1024 3747 2.802816 GCAATGCGGATAGAGGTAACAG 59.197 50.000 0.00 0.00 41.41 3.16
1514 4253 0.824109 CATGACAAGGAGAGGCGGTA 59.176 55.000 0.00 0.00 0.00 4.02
1515 4254 0.904865 TCATGACAAGGAGAGGCGGT 60.905 55.000 0.00 0.00 0.00 5.68
1517 4256 1.938577 CAATCATGACAAGGAGAGGCG 59.061 52.381 0.00 0.00 0.00 5.52
1527 4266 2.874086 GTCATCATCGGCAATCATGACA 59.126 45.455 9.48 0.00 41.95 3.58
1532 4271 2.990642 CCGTCATCATCGGCAATCA 58.009 52.632 0.00 0.00 41.48 2.57
1558 4303 2.821366 CAGCACGCCATCCCTGTC 60.821 66.667 0.00 0.00 0.00 3.51
1559 4304 4.415150 CCAGCACGCCATCCCTGT 62.415 66.667 0.00 0.00 0.00 4.00
1561 4306 3.790437 CTCCAGCACGCCATCCCT 61.790 66.667 0.00 0.00 0.00 4.20
1563 4308 1.521681 GTACTCCAGCACGCCATCC 60.522 63.158 0.00 0.00 0.00 3.51
1574 4319 3.075005 GCAGGGCCTCGTACTCCA 61.075 66.667 0.95 0.00 0.00 3.86
1606 4360 2.279784 CCTGATCTCGAAGCCGCC 60.280 66.667 0.00 0.00 35.37 6.13
1719 4473 2.280797 GTGGCCAGCGTGTTGAGA 60.281 61.111 5.11 0.00 0.00 3.27
1770 4524 2.064581 GGGCACGGTCCAGAGGTAT 61.065 63.158 0.00 0.00 0.00 2.73
2091 4851 2.182537 GTCGCCGGTCCATACGTT 59.817 61.111 1.90 0.00 0.00 3.99
2112 4872 4.243008 TCCGGCTTCCACACGCAA 62.243 61.111 0.00 0.00 0.00 4.85
2728 5497 2.011046 GCTTGTGCTCAGCTTAGGAGG 61.011 57.143 0.00 0.00 36.03 4.30
2729 5498 1.338484 TGCTTGTGCTCAGCTTAGGAG 60.338 52.381 0.00 0.00 40.48 3.69
2730 5499 0.686789 TGCTTGTGCTCAGCTTAGGA 59.313 50.000 0.00 0.00 40.48 2.94
2835 5789 1.608590 CGGCATAGCAAATTCGGGATT 59.391 47.619 0.00 0.00 0.00 3.01
2912 7090 2.504519 GATCAGTGTACGGGGCCC 59.495 66.667 15.76 15.76 0.00 5.80
2954 7132 6.013032 TGGAATTTTTCAGGCCATAAAATCCA 60.013 34.615 22.04 22.04 32.06 3.41
2985 7163 1.557832 AGTATGCCCGGTTGTACACAT 59.442 47.619 0.00 0.00 0.00 3.21
2995 7173 1.405872 TAGTACACCAGTATGCCCGG 58.594 55.000 0.00 0.00 31.84 5.73
3042 7220 2.807967 TGTGTCTCTAACATGCAAGCAC 59.192 45.455 0.00 0.00 40.80 4.40
3084 7262 5.495640 TCAACAGAAAACAAGCCCATTTTT 58.504 33.333 0.00 0.00 0.00 1.94
3085 7263 5.096443 TCAACAGAAAACAAGCCCATTTT 57.904 34.783 0.00 0.00 0.00 1.82
3086 7264 4.751767 TCAACAGAAAACAAGCCCATTT 57.248 36.364 0.00 0.00 0.00 2.32
3087 7265 4.961438 ATCAACAGAAAACAAGCCCATT 57.039 36.364 0.00 0.00 0.00 3.16
3088 7266 4.961438 AATCAACAGAAAACAAGCCCAT 57.039 36.364 0.00 0.00 0.00 4.00
3089 7267 4.751767 AAATCAACAGAAAACAAGCCCA 57.248 36.364 0.00 0.00 0.00 5.36
3090 7268 4.273235 CCAAAATCAACAGAAAACAAGCCC 59.727 41.667 0.00 0.00 0.00 5.19
3091 7269 4.273235 CCCAAAATCAACAGAAAACAAGCC 59.727 41.667 0.00 0.00 0.00 4.35
3092 7270 4.875536 ACCCAAAATCAACAGAAAACAAGC 59.124 37.500 0.00 0.00 0.00 4.01
3093 7271 5.523552 GGACCCAAAATCAACAGAAAACAAG 59.476 40.000 0.00 0.00 0.00 3.16
3094 7272 5.423886 GGACCCAAAATCAACAGAAAACAA 58.576 37.500 0.00 0.00 0.00 2.83
3095 7273 4.440802 CGGACCCAAAATCAACAGAAAACA 60.441 41.667 0.00 0.00 0.00 2.83
3096 7274 4.048504 CGGACCCAAAATCAACAGAAAAC 58.951 43.478 0.00 0.00 0.00 2.43
3097 7275 3.068873 CCGGACCCAAAATCAACAGAAAA 59.931 43.478 0.00 0.00 0.00 2.29
3098 7276 2.625790 CCGGACCCAAAATCAACAGAAA 59.374 45.455 0.00 0.00 0.00 2.52
3099 7277 2.158593 TCCGGACCCAAAATCAACAGAA 60.159 45.455 0.00 0.00 0.00 3.02
3100 7278 1.422024 TCCGGACCCAAAATCAACAGA 59.578 47.619 0.00 0.00 0.00 3.41
3101 7279 1.904287 TCCGGACCCAAAATCAACAG 58.096 50.000 0.00 0.00 0.00 3.16
3102 7280 2.366640 TTCCGGACCCAAAATCAACA 57.633 45.000 1.83 0.00 0.00 3.33
3103 7281 3.953712 AATTCCGGACCCAAAATCAAC 57.046 42.857 1.83 0.00 0.00 3.18
3104 7282 4.101741 ACAAAATTCCGGACCCAAAATCAA 59.898 37.500 1.83 0.00 0.00 2.57
3105 7283 3.643792 ACAAAATTCCGGACCCAAAATCA 59.356 39.130 1.83 0.00 0.00 2.57
3106 7284 4.021456 AGACAAAATTCCGGACCCAAAATC 60.021 41.667 1.83 0.00 0.00 2.17
3107 7285 3.901222 AGACAAAATTCCGGACCCAAAAT 59.099 39.130 1.83 0.00 0.00 1.82
3108 7286 3.301274 AGACAAAATTCCGGACCCAAAA 58.699 40.909 1.83 0.00 0.00 2.44
3109 7287 2.952116 AGACAAAATTCCGGACCCAAA 58.048 42.857 1.83 0.00 0.00 3.28
3110 7288 2.668144 AGACAAAATTCCGGACCCAA 57.332 45.000 1.83 0.00 0.00 4.12
3111 7289 2.668144 AAGACAAAATTCCGGACCCA 57.332 45.000 1.83 0.00 0.00 4.51
3112 7290 3.154710 AGAAAGACAAAATTCCGGACCC 58.845 45.455 1.83 0.00 0.00 4.46
3113 7291 4.037565 ACAAGAAAGACAAAATTCCGGACC 59.962 41.667 1.83 0.00 0.00 4.46
3114 7292 4.976116 CACAAGAAAGACAAAATTCCGGAC 59.024 41.667 1.83 0.00 0.00 4.79
3115 7293 4.499019 GCACAAGAAAGACAAAATTCCGGA 60.499 41.667 0.00 0.00 0.00 5.14
3116 7294 3.735746 GCACAAGAAAGACAAAATTCCGG 59.264 43.478 0.00 0.00 0.00 5.14
3117 7295 4.358851 TGCACAAGAAAGACAAAATTCCG 58.641 39.130 0.00 0.00 0.00 4.30
3118 7296 4.209911 GCTGCACAAGAAAGACAAAATTCC 59.790 41.667 0.00 0.00 0.00 3.01
3119 7297 4.085415 CGCTGCACAAGAAAGACAAAATTC 60.085 41.667 0.00 0.00 0.00 2.17
3120 7298 3.798337 CGCTGCACAAGAAAGACAAAATT 59.202 39.130 0.00 0.00 0.00 1.82
3121 7299 3.181487 ACGCTGCACAAGAAAGACAAAAT 60.181 39.130 0.00 0.00 0.00 1.82
3122 7300 2.163412 ACGCTGCACAAGAAAGACAAAA 59.837 40.909 0.00 0.00 0.00 2.44
3123 7301 1.742831 ACGCTGCACAAGAAAGACAAA 59.257 42.857 0.00 0.00 0.00 2.83
3124 7302 1.378531 ACGCTGCACAAGAAAGACAA 58.621 45.000 0.00 0.00 0.00 3.18
3125 7303 1.864711 GTACGCTGCACAAGAAAGACA 59.135 47.619 0.00 0.00 0.00 3.41
3126 7304 1.864711 TGTACGCTGCACAAGAAAGAC 59.135 47.619 0.00 0.00 0.00 3.01
3127 7305 2.232756 TGTACGCTGCACAAGAAAGA 57.767 45.000 0.00 0.00 0.00 2.52
3128 7306 3.542712 ATTGTACGCTGCACAAGAAAG 57.457 42.857 10.65 0.00 39.15 2.62
3129 7307 3.810386 TGTATTGTACGCTGCACAAGAAA 59.190 39.130 10.65 0.03 39.15 2.52
3130 7308 3.394719 TGTATTGTACGCTGCACAAGAA 58.605 40.909 10.65 0.73 39.15 2.52
3131 7309 3.033368 TGTATTGTACGCTGCACAAGA 57.967 42.857 10.65 4.30 39.15 3.02
3132 7310 3.479006 GTTGTATTGTACGCTGCACAAG 58.521 45.455 10.65 0.00 39.15 3.16
3133 7311 2.096664 CGTTGTATTGTACGCTGCACAA 60.097 45.455 7.83 7.83 40.01 3.33
3134 7312 1.457683 CGTTGTATTGTACGCTGCACA 59.542 47.619 0.00 0.00 0.00 4.57
3135 7313 1.458064 ACGTTGTATTGTACGCTGCAC 59.542 47.619 0.00 0.00 41.24 4.57
3136 7314 1.785768 ACGTTGTATTGTACGCTGCA 58.214 45.000 0.00 0.00 41.24 4.41
3137 7315 2.919229 AGTACGTTGTATTGTACGCTGC 59.081 45.455 0.00 0.00 44.35 5.25
3138 7316 3.545078 GGAGTACGTTGTATTGTACGCTG 59.455 47.826 0.00 0.00 44.35 5.18
3139 7317 3.441572 AGGAGTACGTTGTATTGTACGCT 59.558 43.478 0.00 0.00 44.35 5.07
3140 7318 3.762779 AGGAGTACGTTGTATTGTACGC 58.237 45.455 0.00 0.00 44.35 4.42
3141 7319 4.346129 GGAGGAGTACGTTGTATTGTACG 58.654 47.826 0.00 0.00 44.35 3.67
3142 7320 4.142600 ACGGAGGAGTACGTTGTATTGTAC 60.143 45.833 0.00 0.00 40.99 2.90
3143 7321 4.009675 ACGGAGGAGTACGTTGTATTGTA 58.990 43.478 0.00 0.00 40.99 2.41
3144 7322 2.821969 ACGGAGGAGTACGTTGTATTGT 59.178 45.455 0.00 0.00 40.99 2.71
3145 7323 3.432782 GACGGAGGAGTACGTTGTATTG 58.567 50.000 0.00 0.00 44.24 1.90
3146 7324 2.424956 GGACGGAGGAGTACGTTGTATT 59.575 50.000 0.00 0.00 44.24 1.89
3147 7325 2.019984 GGACGGAGGAGTACGTTGTAT 58.980 52.381 0.00 0.00 44.24 2.29
3148 7326 1.453155 GGACGGAGGAGTACGTTGTA 58.547 55.000 0.00 0.00 44.24 2.41
3149 7327 1.246737 GGGACGGAGGAGTACGTTGT 61.247 60.000 0.00 0.00 44.24 3.32
3150 7328 1.509923 GGGACGGAGGAGTACGTTG 59.490 63.158 0.00 0.00 44.24 4.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.