Multiple sequence alignment - TraesCS4D01G326600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G326600 chr4D 100.000 4269 0 0 1 4269 486320039 486315771 0.000000e+00 7884.0
1 TraesCS4D01G326600 chr4D 92.156 2945 152 18 952 3847 486099936 486102850 0.000000e+00 4085.0
2 TraesCS4D01G326600 chr4D 93.519 432 23 5 3842 4269 486102709 486103139 4.660000e-179 638.0
3 TraesCS4D01G326600 chr4D 93.056 144 8 2 3714 3857 486316192 486316051 4.330000e-50 209.0
4 TraesCS4D01G326600 chr4D 93.056 144 8 2 3848 3989 486316326 486316183 4.330000e-50 209.0
5 TraesCS4D01G326600 chr5A 91.429 2520 160 19 1282 3757 666704985 666707492 0.000000e+00 3406.0
6 TraesCS4D01G326600 chr5A 92.583 391 22 2 1 386 437910037 437910425 4.820000e-154 555.0
7 TraesCS4D01G326600 chr5A 81.454 399 52 14 567 949 437910677 437911069 1.490000e-79 307.0
8 TraesCS4D01G326600 chr5A 92.258 155 12 0 795 949 35082512 35082666 2.000000e-53 220.0
9 TraesCS4D01G326600 chr5A 94.697 132 7 0 1155 1286 666703984 666704115 5.600000e-49 206.0
10 TraesCS4D01G326600 chr5A 89.809 157 15 1 795 951 582616846 582617001 2.600000e-47 200.0
11 TraesCS4D01G326600 chr5A 91.045 67 6 0 423 489 677959779 677959713 1.630000e-14 91.6
12 TraesCS4D01G326600 chr1D 89.480 2538 230 18 952 3472 240587557 240590074 0.000000e+00 3173.0
13 TraesCS4D01G326600 chr1D 93.606 391 18 2 1 386 206978285 206977897 1.030000e-160 577.0
14 TraesCS4D01G326600 chr1D 92.327 391 21 4 1 386 259597780 259597394 8.070000e-152 547.0
15 TraesCS4D01G326600 chr1D 82.500 160 17 7 589 744 1826816 1826968 3.460000e-26 130.0
16 TraesCS4D01G326600 chr1B 89.382 2524 232 17 952 3459 333633414 333630911 0.000000e+00 3144.0
17 TraesCS4D01G326600 chr1A 89.996 2389 215 10 952 3328 304996602 304998978 0.000000e+00 3066.0
18 TraesCS4D01G326600 chr1A 76.884 398 66 14 570 951 582555361 582554974 7.240000e-48 202.0
19 TraesCS4D01G326600 chr3D 88.541 925 75 17 56 952 56437661 56438582 0.000000e+00 1092.0
20 TraesCS4D01G326600 chr3D 92.072 391 24 2 1 386 540943917 540944305 1.040000e-150 544.0
21 TraesCS4D01G326600 chr3D 84.483 464 49 19 510 955 482342208 482342666 1.820000e-118 436.0
22 TraesCS4D01G326600 chr3D 80.731 301 37 12 671 953 56432477 56432180 9.300000e-52 215.0
23 TraesCS4D01G326600 chr2D 88.889 909 68 19 56 948 139747982 139747091 0.000000e+00 1088.0
24 TraesCS4D01G326600 chr2D 90.265 452 30 4 239 676 324176655 324176204 2.860000e-161 579.0
25 TraesCS4D01G326600 chr2D 93.606 391 18 2 1 386 128970499 128970887 1.030000e-160 577.0
26 TraesCS4D01G326600 chr2D 80.186 429 67 11 539 951 128966792 128966366 5.360000e-79 305.0
27 TraesCS4D01G326600 chr2D 77.619 420 63 23 551 948 22766706 22767116 4.300000e-55 226.0
28 TraesCS4D01G326600 chr2D 90.909 154 14 0 795 948 480541852 480541699 1.560000e-49 207.0
29 TraesCS4D01G326600 chr7D 90.247 728 55 5 56 767 426574434 426575161 0.000000e+00 937.0
30 TraesCS4D01G326600 chr7D 79.901 403 59 12 551 948 121657533 121657918 4.200000e-70 276.0
31 TraesCS4D01G326600 chr7D 91.558 154 13 0 795 948 234210274 234210427 3.340000e-51 213.0
32 TraesCS4D01G326600 chr7D 75.430 407 69 23 567 953 399645571 399645966 7.340000e-38 169.0
33 TraesCS4D01G326600 chr6B 92.839 391 21 2 1 386 684569259 684568871 1.040000e-155 560.0
34 TraesCS4D01G326600 chr6B 92.583 391 21 3 1 386 570994194 570994581 4.820000e-154 555.0
35 TraesCS4D01G326600 chr4A 92.583 391 22 2 1 386 642871269 642870881 4.820000e-154 555.0
36 TraesCS4D01G326600 chr4A 92.327 391 23 3 1 386 656876382 656875994 2.240000e-152 549.0
37 TraesCS4D01G326600 chr6D 82.857 455 50 20 510 947 454497082 454496639 2.410000e-102 383.0
38 TraesCS4D01G326600 chr4B 80.562 427 64 10 539 948 37874552 37874128 1.150000e-80 311.0
39 TraesCS4D01G326600 chr5D 90.210 143 13 1 439 581 44484756 44484615 7.290000e-43 185.0
40 TraesCS4D01G326600 chr2B 72.829 357 66 20 523 849 141565826 141565471 4.550000e-15 93.5
41 TraesCS4D01G326600 chr2A 100.000 30 0 0 378 407 509545410 509545439 5.960000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G326600 chr4D 486315771 486320039 4268 True 2767.333333 7884 95.370667 1 4269 3 chr4D.!!$R1 4268
1 TraesCS4D01G326600 chr4D 486099936 486103139 3203 False 2361.500000 4085 92.837500 952 4269 2 chr4D.!!$F1 3317
2 TraesCS4D01G326600 chr5A 666703984 666707492 3508 False 1806.000000 3406 93.063000 1155 3757 2 chr5A.!!$F4 2602
3 TraesCS4D01G326600 chr5A 437910037 437911069 1032 False 431.000000 555 87.018500 1 949 2 chr5A.!!$F3 948
4 TraesCS4D01G326600 chr1D 240587557 240590074 2517 False 3173.000000 3173 89.480000 952 3472 1 chr1D.!!$F2 2520
5 TraesCS4D01G326600 chr1B 333630911 333633414 2503 True 3144.000000 3144 89.382000 952 3459 1 chr1B.!!$R1 2507
6 TraesCS4D01G326600 chr1A 304996602 304998978 2376 False 3066.000000 3066 89.996000 952 3328 1 chr1A.!!$F1 2376
7 TraesCS4D01G326600 chr3D 56437661 56438582 921 False 1092.000000 1092 88.541000 56 952 1 chr3D.!!$F1 896
8 TraesCS4D01G326600 chr2D 139747091 139747982 891 True 1088.000000 1088 88.889000 56 948 1 chr2D.!!$R2 892
9 TraesCS4D01G326600 chr7D 426574434 426575161 727 False 937.000000 937 90.247000 56 767 1 chr7D.!!$F4 711

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
781 873 0.038166 CACTGGGGCACTGTACCAAT 59.962 55.0 0.00 0.00 33.13 3.16 F
939 1053 0.187361 TGGTCAGGGGGTTCTTTTGG 59.813 55.0 0.00 0.00 0.00 3.28 F
1200 1314 0.238553 GCTTTCGCTCAAGTTGGACC 59.761 55.0 2.34 0.00 0.00 4.46 F
2049 3048 0.465705 GATGATGAGGACCGGAAGCA 59.534 55.0 9.46 0.17 0.00 3.91 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2029 3028 0.598680 GCTTCCGGTCCTCATCATCG 60.599 60.0 0.0 0.00 0.00 3.84 R
2153 3152 0.732571 TGCGCTGCTTTAAGCCATAC 59.267 50.0 14.8 2.59 41.51 2.39 R
2271 3271 0.815734 CAGCCAGCCATTTCTCCTTG 59.184 55.0 0.0 0.00 0.00 3.61 R
3760 4824 0.396435 TACACTCCAAGCCACACCTG 59.604 55.0 0.0 0.00 0.00 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
94 95 5.417811 TCATAATTGGCGCACATGAAAAAT 58.582 33.333 10.83 0.00 0.00 1.82
328 348 3.385111 CGGTGTCTCCTTTTATAGGCTCT 59.615 47.826 0.00 0.00 44.37 4.09
331 351 5.071115 GGTGTCTCCTTTTATAGGCTCTGAT 59.929 44.000 0.00 0.00 44.37 2.90
445 509 2.162208 CGCATCCTCTAAAGCAAAAGCA 59.838 45.455 0.00 0.00 0.00 3.91
446 510 3.730061 CGCATCCTCTAAAGCAAAAGCAG 60.730 47.826 0.00 0.00 0.00 4.24
447 511 3.441572 GCATCCTCTAAAGCAAAAGCAGA 59.558 43.478 0.00 0.00 0.00 4.26
448 512 4.438472 GCATCCTCTAAAGCAAAAGCAGAG 60.438 45.833 0.00 0.00 33.93 3.35
450 514 3.416156 CCTCTAAAGCAAAAGCAGAGGT 58.584 45.455 11.91 0.00 44.89 3.85
453 517 4.067896 TCTAAAGCAAAAGCAGAGGTGAG 58.932 43.478 0.00 0.00 0.00 3.51
455 519 1.602311 AGCAAAAGCAGAGGTGAGTG 58.398 50.000 0.00 0.00 0.00 3.51
456 520 1.141657 AGCAAAAGCAGAGGTGAGTGA 59.858 47.619 0.00 0.00 0.00 3.41
458 522 2.843701 CAAAAGCAGAGGTGAGTGACT 58.156 47.619 0.00 0.00 0.00 3.41
459 523 2.540265 AAAGCAGAGGTGAGTGACTG 57.460 50.000 0.00 0.00 0.00 3.51
464 529 0.529833 AGAGGTGAGTGACTGATGCG 59.470 55.000 0.00 0.00 0.00 4.73
470 535 3.545481 GTGACTGATGCGGTCGCG 61.545 66.667 10.79 0.00 42.18 5.87
486 551 1.058057 CGCGTCCGCTAAAGCAAAAC 61.058 55.000 10.21 0.00 42.21 2.43
487 552 0.728129 GCGTCCGCTAAAGCAAAACC 60.728 55.000 4.10 0.00 42.21 3.27
489 554 1.002251 CGTCCGCTAAAGCAAAACCAA 60.002 47.619 2.44 0.00 42.21 3.67
491 556 1.338655 TCCGCTAAAGCAAAACCAACC 59.661 47.619 2.44 0.00 42.21 3.77
493 558 2.393764 CGCTAAAGCAAAACCAACCAG 58.606 47.619 2.44 0.00 42.21 4.00
494 559 2.135139 GCTAAAGCAAAACCAACCAGC 58.865 47.619 0.00 0.00 41.59 4.85
495 560 2.482839 GCTAAAGCAAAACCAACCAGCA 60.483 45.455 0.00 0.00 41.59 4.41
496 561 2.022764 AAAGCAAAACCAACCAGCAC 57.977 45.000 0.00 0.00 0.00 4.40
497 562 0.177836 AAGCAAAACCAACCAGCACC 59.822 50.000 0.00 0.00 0.00 5.01
499 564 1.591327 CAAAACCAACCAGCACCGC 60.591 57.895 0.00 0.00 0.00 5.68
500 565 1.756561 AAAACCAACCAGCACCGCT 60.757 52.632 0.00 0.00 40.77 5.52
521 586 1.957186 GTGTCGGCACAAGCGGTAA 60.957 57.895 16.80 0.00 44.64 2.85
522 587 1.227586 TGTCGGCACAAGCGGTAAA 60.228 52.632 0.00 0.00 43.41 2.01
541 619 0.532115 AAAATGCACAGATTCCCGCC 59.468 50.000 0.00 0.00 0.00 6.13
543 621 4.776322 TGCACAGATTCCCGCCCG 62.776 66.667 0.00 0.00 0.00 6.13
546 624 3.000819 ACAGATTCCCGCCCGTGA 61.001 61.111 0.00 0.00 0.00 4.35
547 625 2.267642 CAGATTCCCGCCCGTGAA 59.732 61.111 0.00 0.00 0.00 3.18
551 629 0.380733 GATTCCCGCCCGTGAAAATC 59.619 55.000 0.00 0.00 0.00 2.17
553 631 0.958382 TTCCCGCCCGTGAAAATCAG 60.958 55.000 0.00 0.00 0.00 2.90
556 634 2.677003 CGCCCGTGAAAATCAGCGT 61.677 57.895 4.82 0.00 34.99 5.07
561 639 0.246374 CGTGAAAATCAGCGTCGTCG 60.246 55.000 0.00 0.00 40.37 5.12
562 640 0.093026 GTGAAAATCAGCGTCGTCGG 59.907 55.000 3.90 0.00 37.56 4.79
565 643 1.897398 AAAATCAGCGTCGTCGGCAC 61.897 55.000 3.90 0.00 37.56 5.01
582 673 4.514577 CGGGAATCAGCGCCGTCT 62.515 66.667 2.29 0.00 0.00 4.18
584 675 2.125512 GGAATCAGCGCCGTCTGT 60.126 61.111 2.29 0.00 35.63 3.41
587 678 1.291877 GAATCAGCGCCGTCTGTGTT 61.292 55.000 2.29 0.00 35.63 3.32
601 693 4.583254 TGTTGTTGTCGCGCGTGC 62.583 61.111 30.98 23.08 37.91 5.34
620 712 2.362120 GCAACAGGGATGCTGCCT 60.362 61.111 0.00 0.00 39.53 4.75
625 717 2.362120 AGGGATGCTGCCTGTTGC 60.362 61.111 0.00 0.00 36.59 4.17
626 718 3.818787 GGGATGCTGCCTGTTGCG 61.819 66.667 0.00 0.00 45.60 4.85
758 850 4.891727 CCGTTCCATCCCGGCTCG 62.892 72.222 0.00 0.00 37.43 5.03
779 871 3.156714 CACTGGGGCACTGTACCA 58.843 61.111 0.00 0.00 0.00 3.25
781 873 0.038166 CACTGGGGCACTGTACCAAT 59.962 55.000 0.00 0.00 33.13 3.16
783 875 1.176527 CTGGGGCACTGTACCAATTG 58.823 55.000 0.00 0.00 33.13 2.32
790 882 3.304794 GGCACTGTACCAATTGCGTTTTA 60.305 43.478 0.00 0.00 35.74 1.52
894 1008 7.390718 GCGGTCCTTTTAGTCAATTATATCCAT 59.609 37.037 0.00 0.00 0.00 3.41
895 1009 8.721478 CGGTCCTTTTAGTCAATTATATCCATG 58.279 37.037 0.00 0.00 0.00 3.66
896 1010 9.014297 GGTCCTTTTAGTCAATTATATCCATGG 57.986 37.037 4.97 4.97 0.00 3.66
897 1011 9.793259 GTCCTTTTAGTCAATTATATCCATGGA 57.207 33.333 18.88 18.88 0.00 3.41
904 1018 8.923838 AGTCAATTATATCCATGGATAGTCCT 57.076 34.615 32.47 21.31 40.01 3.85
905 1019 9.343994 AGTCAATTATATCCATGGATAGTCCTT 57.656 33.333 32.47 21.00 40.01 3.36
906 1020 9.965902 GTCAATTATATCCATGGATAGTCCTTT 57.034 33.333 32.47 20.38 40.01 3.11
911 1025 9.793259 TTATATCCATGGATAGTCCTTTTTGAC 57.207 33.333 32.47 0.00 40.01 3.18
912 1026 5.512942 TCCATGGATAGTCCTTTTTGACA 57.487 39.130 11.44 0.00 37.46 3.58
913 1027 5.886609 TCCATGGATAGTCCTTTTTGACAA 58.113 37.500 11.44 0.00 37.46 3.18
914 1028 6.493166 TCCATGGATAGTCCTTTTTGACAAT 58.507 36.000 11.44 0.00 37.46 2.71
915 1029 6.953520 TCCATGGATAGTCCTTTTTGACAATT 59.046 34.615 11.44 0.00 37.46 2.32
916 1030 7.122650 TCCATGGATAGTCCTTTTTGACAATTC 59.877 37.037 11.44 0.00 37.46 2.17
917 1031 7.123247 CCATGGATAGTCCTTTTTGACAATTCT 59.877 37.037 5.56 0.00 37.46 2.40
918 1032 7.452880 TGGATAGTCCTTTTTGACAATTCTG 57.547 36.000 0.00 0.00 37.46 3.02
919 1033 7.004086 TGGATAGTCCTTTTTGACAATTCTGT 58.996 34.615 0.00 0.00 37.46 3.41
920 1034 7.505585 TGGATAGTCCTTTTTGACAATTCTGTT 59.494 33.333 0.00 0.00 37.46 3.16
921 1035 7.809806 GGATAGTCCTTTTTGACAATTCTGTTG 59.190 37.037 0.00 0.00 37.73 3.33
922 1036 5.906073 AGTCCTTTTTGACAATTCTGTTGG 58.094 37.500 0.00 0.00 37.73 3.77
923 1037 5.422012 AGTCCTTTTTGACAATTCTGTTGGT 59.578 36.000 0.00 0.00 37.73 3.67
924 1038 5.748630 GTCCTTTTTGACAATTCTGTTGGTC 59.251 40.000 0.00 0.00 35.30 4.02
925 1039 5.420421 TCCTTTTTGACAATTCTGTTGGTCA 59.580 36.000 0.00 0.00 38.41 4.02
926 1040 5.750067 CCTTTTTGACAATTCTGTTGGTCAG 59.250 40.000 0.00 0.00 40.90 3.51
927 1041 4.916983 TTTGACAATTCTGTTGGTCAGG 57.083 40.909 0.00 0.00 43.76 3.86
928 1042 2.862541 TGACAATTCTGTTGGTCAGGG 58.137 47.619 0.00 0.00 43.76 4.45
929 1043 2.162681 GACAATTCTGTTGGTCAGGGG 58.837 52.381 0.00 0.00 43.76 4.79
930 1044 1.203050 ACAATTCTGTTGGTCAGGGGG 60.203 52.381 0.00 0.00 43.76 5.40
931 1045 1.158007 AATTCTGTTGGTCAGGGGGT 58.842 50.000 0.00 0.00 43.76 4.95
932 1046 1.158007 ATTCTGTTGGTCAGGGGGTT 58.842 50.000 0.00 0.00 43.76 4.11
933 1047 0.476771 TTCTGTTGGTCAGGGGGTTC 59.523 55.000 0.00 0.00 43.76 3.62
934 1048 0.401395 TCTGTTGGTCAGGGGGTTCT 60.401 55.000 0.00 0.00 43.76 3.01
935 1049 0.478507 CTGTTGGTCAGGGGGTTCTT 59.521 55.000 0.00 0.00 40.23 2.52
936 1050 0.930726 TGTTGGTCAGGGGGTTCTTT 59.069 50.000 0.00 0.00 0.00 2.52
937 1051 1.289530 TGTTGGTCAGGGGGTTCTTTT 59.710 47.619 0.00 0.00 0.00 2.27
938 1052 1.686587 GTTGGTCAGGGGGTTCTTTTG 59.313 52.381 0.00 0.00 0.00 2.44
939 1053 0.187361 TGGTCAGGGGGTTCTTTTGG 59.813 55.000 0.00 0.00 0.00 3.28
940 1054 0.481128 GGTCAGGGGGTTCTTTTGGA 59.519 55.000 0.00 0.00 0.00 3.53
941 1055 1.617322 GTCAGGGGGTTCTTTTGGAC 58.383 55.000 0.00 0.00 0.00 4.02
942 1056 1.133606 GTCAGGGGGTTCTTTTGGACA 60.134 52.381 0.00 0.00 0.00 4.02
943 1057 1.571457 TCAGGGGGTTCTTTTGGACAA 59.429 47.619 0.00 0.00 0.00 3.18
944 1058 2.023888 TCAGGGGGTTCTTTTGGACAAA 60.024 45.455 0.00 0.00 0.00 2.83
945 1059 2.769095 CAGGGGGTTCTTTTGGACAAAA 59.231 45.455 9.58 9.58 37.90 2.44
946 1060 3.198853 CAGGGGGTTCTTTTGGACAAAAA 59.801 43.478 10.95 0.25 39.49 1.94
967 1081 2.317371 ATCGGAGTGGGAGAGCATAT 57.683 50.000 0.00 0.00 0.00 1.78
1001 1115 2.829043 TACTCGGCGCGCAACAAGAT 62.829 55.000 34.42 13.24 0.00 2.40
1008 1122 1.497278 GCGCAACAAGATGAAGCGA 59.503 52.632 19.20 0.00 42.90 4.93
1011 1125 2.855180 CGCAACAAGATGAAGCGATTT 58.145 42.857 12.98 0.00 42.90 2.17
1045 1159 3.695606 TGCCGGACACTCTGCTCC 61.696 66.667 5.05 0.00 0.00 4.70
1053 1167 1.123861 ACACTCTGCTCCAGAAGGCA 61.124 55.000 0.00 0.00 40.18 4.75
1088 1202 2.587247 ATGTCACAGCGCTGGACCT 61.587 57.895 35.29 28.86 33.08 3.85
1100 1214 1.821061 CTGGACCTCAAGAGCCGTGT 61.821 60.000 0.00 0.00 0.00 4.49
1102 1216 1.367840 GACCTCAAGAGCCGTGTGT 59.632 57.895 0.00 0.00 0.00 3.72
1103 1217 0.946221 GACCTCAAGAGCCGTGTGTG 60.946 60.000 0.00 0.00 0.00 3.82
1129 1243 3.991051 CACAGAGACGCCGTGGGT 61.991 66.667 0.00 0.00 0.00 4.51
1200 1314 0.238553 GCTTTCGCTCAAGTTGGACC 59.761 55.000 2.34 0.00 0.00 4.46
1492 2491 0.548510 GGTTGGCTAGCCCAGAAGAT 59.451 55.000 30.81 0.00 46.39 2.40
1494 2493 2.621668 GGTTGGCTAGCCCAGAAGATTT 60.622 50.000 30.81 0.00 46.39 2.17
1507 2506 4.096081 CCAGAAGATTTCAAGGCAGTCATC 59.904 45.833 0.00 0.00 0.00 2.92
1577 2576 5.017490 AGGCTGCAAAACTAGAGACTAGTA 58.983 41.667 11.09 0.00 0.00 1.82
1610 2609 0.777446 CAGGGTTTTGAGGAAGGGGA 59.223 55.000 0.00 0.00 0.00 4.81
1829 2828 2.537633 ACCTGCCATTTGGATCACAT 57.462 45.000 0.00 0.00 37.39 3.21
1830 2829 2.823959 ACCTGCCATTTGGATCACATT 58.176 42.857 0.00 0.00 37.39 2.71
1831 2830 2.762327 ACCTGCCATTTGGATCACATTC 59.238 45.455 0.00 0.00 37.39 2.67
1832 2831 2.761767 CCTGCCATTTGGATCACATTCA 59.238 45.455 0.00 0.00 37.39 2.57
1833 2832 3.429822 CCTGCCATTTGGATCACATTCAC 60.430 47.826 0.00 0.00 37.39 3.18
1834 2833 3.163467 TGCCATTTGGATCACATTCACA 58.837 40.909 0.00 0.00 37.39 3.58
1894 2893 2.854777 CGTAAGCAAGACGATTGAGAGG 59.145 50.000 8.90 0.00 42.98 3.69
2023 3022 4.794278 TGTCAAAAGCACTATCGGAGTA 57.206 40.909 0.00 0.00 35.64 2.59
2029 3028 0.960286 GCACTATCGGAGTAGGGGTC 59.040 60.000 0.00 0.00 35.64 4.46
2049 3048 0.465705 GATGATGAGGACCGGAAGCA 59.534 55.000 9.46 0.17 0.00 3.91
2077 3076 4.547859 GCGGATGCAGAGGAATGT 57.452 55.556 0.00 0.00 42.15 2.71
2084 3083 3.938963 GGATGCAGAGGAATGTACGAAAA 59.061 43.478 0.00 0.00 0.00 2.29
2153 3152 3.181774 CGTGTTCGTTACCAAGAAGAGTG 59.818 47.826 0.00 0.00 0.00 3.51
2167 3166 5.165961 AGAAGAGTGTATGGCTTAAAGCA 57.834 39.130 0.00 0.00 44.75 3.91
2191 3190 1.065636 CAGCTTGAGAAGAGCCATGGA 60.066 52.381 18.40 0.00 41.03 3.41
2223 3223 8.038351 AGAATCTCTTGAAGCCTTCTACTAAAC 58.962 37.037 5.96 0.00 29.84 2.01
2226 3226 3.671008 TGAAGCCTTCTACTAAACGCA 57.329 42.857 5.96 0.00 0.00 5.24
2245 3245 6.569179 ACGCAGTTAAGTACAATCCAAAAT 57.431 33.333 0.00 0.00 37.78 1.82
2250 3250 7.965107 GCAGTTAAGTACAATCCAAAATCTGAG 59.035 37.037 0.00 0.00 0.00 3.35
2251 3251 7.965107 CAGTTAAGTACAATCCAAAATCTGAGC 59.035 37.037 0.00 0.00 0.00 4.26
2267 3267 3.135348 TCTGAGCTGTTATGGCTTATGCT 59.865 43.478 0.00 0.00 40.40 3.79
2385 3385 6.072452 GGTTAGCTGCATTCAAGTTAGAGTTT 60.072 38.462 1.02 0.00 0.00 2.66
2434 3434 1.115326 GCTTTTGACCAAGGCCAGGT 61.115 55.000 18.81 18.81 43.46 4.00
2498 3498 1.564348 TGGGAGGGAACTAGGAAATGC 59.436 52.381 0.00 0.00 44.43 3.56
2510 3510 5.440610 ACTAGGAAATGCGAATGAGGAAAT 58.559 37.500 0.00 0.00 0.00 2.17
2511 3511 5.888161 ACTAGGAAATGCGAATGAGGAAATT 59.112 36.000 0.00 0.00 0.00 1.82
2512 3512 7.054124 ACTAGGAAATGCGAATGAGGAAATTA 58.946 34.615 0.00 0.00 0.00 1.40
2513 3513 6.773976 AGGAAATGCGAATGAGGAAATTAA 57.226 33.333 0.00 0.00 0.00 1.40
2546 3546 3.268023 AGGAAGGCCTGAAGTTATTCG 57.732 47.619 5.69 0.00 44.90 3.34
2558 3558 4.566759 TGAAGTTATTCGCCTCATTCTTCG 59.433 41.667 0.00 0.00 38.34 3.79
2596 3596 1.541233 GGGCAGATGGAAGACCGTATG 60.541 57.143 0.00 0.00 44.46 2.39
2634 3634 4.440663 GGCAAAGGAGGTTTATGAGAATGC 60.441 45.833 0.00 0.00 0.00 3.56
2732 3732 3.423154 CACGCGCTTTCCTCACCC 61.423 66.667 5.73 0.00 0.00 4.61
2734 3734 2.280552 ACGCGCTTTCCTCACCCTA 61.281 57.895 5.73 0.00 0.00 3.53
2878 3878 2.432972 GGCATTTTGTGGGCTGCG 60.433 61.111 0.00 0.00 35.47 5.18
2926 3928 2.481952 ACGCAAATCAAAGAGCTCAGAC 59.518 45.455 17.77 0.00 0.00 3.51
2929 3931 1.731720 AATCAAAGAGCTCAGACGCC 58.268 50.000 17.77 0.00 0.00 5.68
2938 3940 1.137872 AGCTCAGACGCCATAAAGAGG 59.862 52.381 0.00 0.00 0.00 3.69
3207 4209 2.771089 TGAGAACTCACATCAGCCAAC 58.229 47.619 0.00 0.00 34.14 3.77
3266 4278 4.220602 GTGTGGAAGAAAACCCAATGCTAT 59.779 41.667 0.00 0.00 33.69 2.97
3314 4327 4.365899 AAGGTTTTCGTCTGTTCAAACC 57.634 40.909 4.76 4.76 45.87 3.27
3495 4545 6.106648 TGTGGCTATCATTAAGGATCTCTG 57.893 41.667 5.78 0.00 0.00 3.35
3500 4550 7.675619 TGGCTATCATTAAGGATCTCTGTCATA 59.324 37.037 5.78 0.00 0.00 2.15
3514 4564 6.888105 TCTCTGTCATACCTGAATATGCAAA 58.112 36.000 0.00 0.00 33.31 3.68
3582 4632 8.887717 CCAAAGAGGATTACAGAGTTTGAATAG 58.112 37.037 0.00 0.00 41.22 1.73
3732 4796 7.750769 TGGTAGTACACAAAGTTACAACAAAC 58.249 34.615 2.06 0.00 0.00 2.93
3733 4797 7.607223 TGGTAGTACACAAAGTTACAACAAACT 59.393 33.333 2.06 0.00 41.46 2.66
3734 4798 7.906527 GGTAGTACACAAAGTTACAACAAACTG 59.093 37.037 2.06 0.00 39.62 3.16
3735 4799 7.675962 AGTACACAAAGTTACAACAAACTGA 57.324 32.000 0.00 0.00 39.62 3.41
3736 4800 8.101654 AGTACACAAAGTTACAACAAACTGAA 57.898 30.769 0.00 0.00 39.62 3.02
3737 4801 8.019094 AGTACACAAAGTTACAACAAACTGAAC 58.981 33.333 0.00 0.00 39.62 3.18
3738 4802 6.740110 ACACAAAGTTACAACAAACTGAACA 58.260 32.000 0.00 0.00 39.62 3.18
3739 4803 6.861055 ACACAAAGTTACAACAAACTGAACAG 59.139 34.615 0.00 0.00 39.62 3.16
3740 4804 5.861787 ACAAAGTTACAACAAACTGAACAGC 59.138 36.000 1.46 0.00 39.62 4.40
3741 4805 5.637006 AAGTTACAACAAACTGAACAGCA 57.363 34.783 1.46 0.00 39.62 4.41
3742 4806 4.981794 AGTTACAACAAACTGAACAGCAC 58.018 39.130 1.46 0.00 38.28 4.40
3743 4807 4.700213 AGTTACAACAAACTGAACAGCACT 59.300 37.500 1.46 0.00 38.28 4.40
3744 4808 3.492421 ACAACAAACTGAACAGCACTG 57.508 42.857 1.46 0.00 0.00 3.66
3745 4809 2.187707 CAACAAACTGAACAGCACTGC 58.812 47.619 1.46 0.00 0.00 4.40
3746 4810 0.740737 ACAAACTGAACAGCACTGCC 59.259 50.000 0.00 0.00 0.00 4.85
3747 4811 0.740149 CAAACTGAACAGCACTGCCA 59.260 50.000 0.00 0.00 0.00 4.92
3748 4812 1.027357 AAACTGAACAGCACTGCCAG 58.973 50.000 15.08 15.08 39.15 4.85
3749 4813 1.450531 AACTGAACAGCACTGCCAGC 61.451 55.000 16.06 0.00 37.78 4.85
3750 4814 2.962827 CTGAACAGCACTGCCAGCG 61.963 63.158 0.00 0.00 37.01 5.18
3751 4815 4.395583 GAACAGCACTGCCAGCGC 62.396 66.667 0.00 0.00 37.01 5.92
3766 4830 4.082523 CGCCGTCCATCCAGGTGT 62.083 66.667 0.00 0.00 39.02 4.16
3767 4831 2.436646 GCCGTCCATCCAGGTGTG 60.437 66.667 0.00 0.00 39.02 3.82
3768 4832 2.268920 CCGTCCATCCAGGTGTGG 59.731 66.667 7.18 7.18 46.63 4.17
3769 4833 2.436646 CGTCCATCCAGGTGTGGC 60.437 66.667 8.35 4.29 44.60 5.01
3770 4834 2.959484 CGTCCATCCAGGTGTGGCT 61.959 63.158 8.35 0.00 44.60 4.75
3771 4835 1.380302 GTCCATCCAGGTGTGGCTT 59.620 57.895 8.35 0.00 44.60 4.35
3772 4836 0.962356 GTCCATCCAGGTGTGGCTTG 60.962 60.000 8.35 0.00 44.60 4.01
3773 4837 1.679977 CCATCCAGGTGTGGCTTGG 60.680 63.158 1.35 0.00 44.60 3.61
3775 4839 3.160585 TCCAGGTGTGGCTTGGAG 58.839 61.111 0.00 0.00 46.76 3.86
3776 4840 1.770110 TCCAGGTGTGGCTTGGAGT 60.770 57.895 0.00 0.00 46.76 3.85
3777 4841 1.601759 CCAGGTGTGGCTTGGAGTG 60.602 63.158 0.00 0.00 46.27 3.51
3778 4842 1.149174 CAGGTGTGGCTTGGAGTGT 59.851 57.895 0.00 0.00 0.00 3.55
3779 4843 0.396435 CAGGTGTGGCTTGGAGTGTA 59.604 55.000 0.00 0.00 0.00 2.90
3780 4844 1.003580 CAGGTGTGGCTTGGAGTGTAT 59.996 52.381 0.00 0.00 0.00 2.29
3781 4845 1.705186 AGGTGTGGCTTGGAGTGTATT 59.295 47.619 0.00 0.00 0.00 1.89
3782 4846 1.812571 GGTGTGGCTTGGAGTGTATTG 59.187 52.381 0.00 0.00 0.00 1.90
3783 4847 1.200020 GTGTGGCTTGGAGTGTATTGC 59.800 52.381 0.00 0.00 0.00 3.56
3784 4848 1.073763 TGTGGCTTGGAGTGTATTGCT 59.926 47.619 0.00 0.00 0.00 3.91
3785 4849 2.162681 GTGGCTTGGAGTGTATTGCTT 58.837 47.619 0.00 0.00 0.00 3.91
3786 4850 2.162408 GTGGCTTGGAGTGTATTGCTTC 59.838 50.000 0.00 0.00 0.00 3.86
3787 4851 2.040278 TGGCTTGGAGTGTATTGCTTCT 59.960 45.455 0.00 0.00 0.00 2.85
3788 4852 3.084786 GGCTTGGAGTGTATTGCTTCTT 58.915 45.455 0.00 0.00 0.00 2.52
3789 4853 4.261801 GGCTTGGAGTGTATTGCTTCTTA 58.738 43.478 0.00 0.00 0.00 2.10
3790 4854 4.884164 GGCTTGGAGTGTATTGCTTCTTAT 59.116 41.667 0.00 0.00 0.00 1.73
3791 4855 6.055588 GGCTTGGAGTGTATTGCTTCTTATA 58.944 40.000 0.00 0.00 0.00 0.98
3792 4856 6.542370 GGCTTGGAGTGTATTGCTTCTTATAA 59.458 38.462 0.00 0.00 0.00 0.98
3793 4857 7.229506 GGCTTGGAGTGTATTGCTTCTTATAAT 59.770 37.037 0.00 0.00 0.00 1.28
3794 4858 8.624776 GCTTGGAGTGTATTGCTTCTTATAATT 58.375 33.333 0.00 0.00 0.00 1.40
3796 4860 9.679661 TTGGAGTGTATTGCTTCTTATAATTCA 57.320 29.630 0.00 0.00 0.00 2.57
3797 4861 9.109393 TGGAGTGTATTGCTTCTTATAATTCAC 57.891 33.333 0.00 0.00 34.40 3.18
3798 4862 8.560374 GGAGTGTATTGCTTCTTATAATTCACC 58.440 37.037 0.00 0.00 34.59 4.02
3799 4863 8.451908 AGTGTATTGCTTCTTATAATTCACCC 57.548 34.615 0.00 0.00 34.59 4.61
3800 4864 8.052748 AGTGTATTGCTTCTTATAATTCACCCA 58.947 33.333 0.00 0.00 34.59 4.51
3801 4865 8.850156 GTGTATTGCTTCTTATAATTCACCCAT 58.150 33.333 0.00 0.00 30.61 4.00
3806 4870 7.925993 TGCTTCTTATAATTCACCCATAAACG 58.074 34.615 0.00 0.00 0.00 3.60
3807 4871 7.771361 TGCTTCTTATAATTCACCCATAAACGA 59.229 33.333 0.00 0.00 0.00 3.85
3808 4872 8.784043 GCTTCTTATAATTCACCCATAAACGAT 58.216 33.333 0.00 0.00 0.00 3.73
3810 4874 9.839817 TTCTTATAATTCACCCATAAACGATGA 57.160 29.630 0.00 0.00 37.82 2.92
3811 4875 9.839817 TCTTATAATTCACCCATAAACGATGAA 57.160 29.630 0.00 0.00 37.82 2.57
3815 4879 9.748708 ATAATTCACCCATAAACGATGAAATTG 57.251 29.630 0.00 0.00 37.82 2.32
3816 4880 4.992688 TCACCCATAAACGATGAAATTGC 58.007 39.130 0.00 0.00 37.82 3.56
3817 4881 4.460731 TCACCCATAAACGATGAAATTGCA 59.539 37.500 0.00 0.00 37.82 4.08
3818 4882 5.047731 TCACCCATAAACGATGAAATTGCAA 60.048 36.000 0.00 0.00 37.82 4.08
3819 4883 5.811613 CACCCATAAACGATGAAATTGCAAT 59.188 36.000 5.99 5.99 37.82 3.56
3820 4884 5.811613 ACCCATAAACGATGAAATTGCAATG 59.188 36.000 13.82 1.37 37.82 2.82
3821 4885 5.811613 CCCATAAACGATGAAATTGCAATGT 59.188 36.000 13.82 7.41 37.82 2.71
3822 4886 6.237888 CCCATAAACGATGAAATTGCAATGTG 60.238 38.462 13.82 0.00 37.82 3.21
3823 4887 4.650545 AAACGATGAAATTGCAATGTGC 57.349 36.364 13.82 6.12 45.29 4.57
3824 4888 3.581024 ACGATGAAATTGCAATGTGCT 57.419 38.095 13.82 0.00 45.31 4.40
3825 4889 3.916761 ACGATGAAATTGCAATGTGCTT 58.083 36.364 13.82 2.92 45.31 3.91
3826 4890 5.058149 ACGATGAAATTGCAATGTGCTTA 57.942 34.783 13.82 0.00 45.31 3.09
3827 4891 4.858692 ACGATGAAATTGCAATGTGCTTAC 59.141 37.500 13.82 0.00 45.31 2.34
3828 4892 5.097529 CGATGAAATTGCAATGTGCTTACT 58.902 37.500 13.82 0.00 45.31 2.24
3829 4893 6.128035 ACGATGAAATTGCAATGTGCTTACTA 60.128 34.615 13.82 0.00 45.31 1.82
3830 4894 6.914215 CGATGAAATTGCAATGTGCTTACTAT 59.086 34.615 13.82 0.00 45.31 2.12
3831 4895 7.096763 CGATGAAATTGCAATGTGCTTACTATG 60.097 37.037 13.82 0.00 45.31 2.23
3832 4896 6.923012 TGAAATTGCAATGTGCTTACTATGT 58.077 32.000 13.82 0.00 45.31 2.29
3833 4897 8.049655 TGAAATTGCAATGTGCTTACTATGTA 57.950 30.769 13.82 0.00 45.31 2.29
3834 4898 8.685427 TGAAATTGCAATGTGCTTACTATGTAT 58.315 29.630 13.82 0.00 45.31 2.29
3835 4899 8.861033 AAATTGCAATGTGCTTACTATGTATG 57.139 30.769 13.82 0.00 45.31 2.39
3836 4900 5.422666 TGCAATGTGCTTACTATGTATGC 57.577 39.130 1.43 8.15 45.31 3.14
3837 4901 5.125356 TGCAATGTGCTTACTATGTATGCT 58.875 37.500 13.87 0.00 45.31 3.79
3838 4902 5.007921 TGCAATGTGCTTACTATGTATGCTG 59.992 40.000 13.87 7.32 45.31 4.41
3839 4903 5.237127 GCAATGTGCTTACTATGTATGCTGA 59.763 40.000 13.87 4.40 40.96 4.26
3840 4904 6.072838 GCAATGTGCTTACTATGTATGCTGAT 60.073 38.462 13.87 5.97 40.96 2.90
3841 4905 7.516481 CAATGTGCTTACTATGTATGCTGATC 58.484 38.462 13.87 0.00 0.00 2.92
3842 4906 6.160576 TGTGCTTACTATGTATGCTGATCA 57.839 37.500 13.87 0.00 0.00 2.92
3843 4907 6.762333 TGTGCTTACTATGTATGCTGATCAT 58.238 36.000 13.87 0.00 39.17 2.45
3844 4908 7.219322 TGTGCTTACTATGTATGCTGATCATT 58.781 34.615 13.87 0.00 36.63 2.57
3845 4909 7.716560 TGTGCTTACTATGTATGCTGATCATTT 59.283 33.333 13.87 0.00 36.63 2.32
3846 4910 9.208022 GTGCTTACTATGTATGCTGATCATTTA 57.792 33.333 13.87 0.00 36.63 1.40
3847 4911 9.948964 TGCTTACTATGTATGCTGATCATTTAT 57.051 29.630 13.87 0.00 36.63 1.40
3856 4920 9.394767 TGTATGCTGATCATTTATACACAAAGT 57.605 29.630 16.55 0.00 36.63 2.66
3860 4924 9.225436 TGCTGATCATTTATACACAAAGTTACA 57.775 29.630 0.00 0.00 0.00 2.41
3909 4973 3.160585 TCCAGGTGTGGCTTGGAG 58.839 61.111 0.00 0.00 46.76 3.86
3954 5018 4.746115 CCCATAAACGATGAAATTGCCATG 59.254 41.667 0.00 0.00 37.82 3.66
3960 5024 2.601314 CGATGAAATTGCCATGTGCTTG 59.399 45.455 7.54 0.00 42.00 4.01
4046 5111 1.656652 ATATGTGCGCTGAAGACCAC 58.343 50.000 9.73 0.00 0.00 4.16
4070 5135 6.045318 CAGAATGTACCAGTGGTAGAATCAG 58.955 44.000 27.56 19.77 39.02 2.90
4131 5196 5.697067 AGTCAGGGTATACTACTCTTCAGG 58.303 45.833 2.25 0.00 37.41 3.86
4148 5213 6.616947 TCTTCAGGGCGTTTATAAAACATTG 58.383 36.000 0.00 0.00 0.00 2.82
4254 5320 2.692557 TGCAGCAATAACTTGTGTTGGT 59.307 40.909 0.00 0.00 39.36 3.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 7.201626 CCGGTATGTTTTAACCATCACGAATAA 60.202 37.037 0.00 0.00 35.35 1.40
22 23 1.204146 ATGACAAGCCTCCGGTATGT 58.796 50.000 0.00 0.37 0.00 2.29
40 41 4.281182 CCACCCGTAGCTATTTCAGAGTAT 59.719 45.833 0.00 0.00 0.00 2.12
94 95 5.815233 TTTTAGATTGGTTGGGCATGAAA 57.185 34.783 0.00 0.00 0.00 2.69
126 127 3.416156 GATCTTTGCAAGGTGAAGGAGT 58.584 45.455 8.56 0.00 0.00 3.85
197 198 2.356069 GCATTAGGCCGAGGAAAAAGAG 59.644 50.000 0.00 0.00 36.11 2.85
200 201 2.507407 AGCATTAGGCCGAGGAAAAA 57.493 45.000 0.00 0.00 46.50 1.94
328 348 3.264998 TCTCGCCATCATTTGTCATCA 57.735 42.857 0.00 0.00 0.00 3.07
331 351 5.066375 CCTATTTTCTCGCCATCATTTGTCA 59.934 40.000 0.00 0.00 0.00 3.58
445 509 0.529833 CGCATCAGTCACTCACCTCT 59.470 55.000 0.00 0.00 0.00 3.69
446 510 0.459237 CCGCATCAGTCACTCACCTC 60.459 60.000 0.00 0.00 0.00 3.85
447 511 1.188219 ACCGCATCAGTCACTCACCT 61.188 55.000 0.00 0.00 0.00 4.00
448 512 0.737715 GACCGCATCAGTCACTCACC 60.738 60.000 0.00 0.00 34.27 4.02
450 514 1.212751 CGACCGCATCAGTCACTCA 59.787 57.895 0.00 0.00 33.70 3.41
453 517 3.545481 CGCGACCGCATCAGTCAC 61.545 66.667 14.91 0.00 42.06 3.67
455 519 3.248171 GACGCGACCGCATCAGTC 61.248 66.667 15.93 9.37 42.06 3.51
456 520 4.796231 GGACGCGACCGCATCAGT 62.796 66.667 15.93 2.79 42.06 3.41
470 535 2.390938 GTTGGTTTTGCTTTAGCGGAC 58.609 47.619 0.00 0.00 45.83 4.79
477 542 1.406751 GGTGCTGGTTGGTTTTGCTTT 60.407 47.619 0.00 0.00 0.00 3.51
479 544 1.822615 GGTGCTGGTTGGTTTTGCT 59.177 52.632 0.00 0.00 0.00 3.91
504 569 0.814410 TTTTACCGCTTGTGCCGACA 60.814 50.000 0.00 0.00 35.36 4.35
505 570 0.308376 TTTTTACCGCTTGTGCCGAC 59.692 50.000 0.00 0.00 35.36 4.79
521 586 1.066929 GGCGGGAATCTGTGCATTTTT 60.067 47.619 0.00 0.00 0.00 1.94
522 587 0.532115 GGCGGGAATCTGTGCATTTT 59.468 50.000 0.00 0.00 0.00 1.82
526 591 4.776322 CGGGCGGGAATCTGTGCA 62.776 66.667 0.00 0.00 0.00 4.57
528 606 2.796483 TTCACGGGCGGGAATCTGTG 62.796 60.000 0.00 0.00 40.55 3.66
532 610 0.380733 GATTTTCACGGGCGGGAATC 59.619 55.000 0.00 0.00 37.38 2.52
541 619 0.093026 GACGACGCTGATTTTCACGG 59.907 55.000 0.00 0.00 0.00 4.94
543 621 0.093026 CCGACGACGCTGATTTTCAC 59.907 55.000 0.64 0.00 38.29 3.18
546 624 1.666553 TGCCGACGACGCTGATTTT 60.667 52.632 0.64 0.00 38.29 1.82
547 625 2.048597 TGCCGACGACGCTGATTT 60.049 55.556 0.64 0.00 38.29 2.17
565 643 4.514577 AGACGGCGCTGATTCCCG 62.515 66.667 25.98 11.16 46.97 5.14
582 673 3.189473 ACGCGCGACAACAACACA 61.189 55.556 39.36 0.00 0.00 3.72
584 675 4.583254 GCACGCGCGACAACAACA 62.583 61.111 39.36 0.00 0.00 3.33
608 700 2.362120 GCAACAGGCAGCATCCCT 60.362 61.111 0.00 0.00 43.97 4.20
609 701 3.818787 CGCAACAGGCAGCATCCC 61.819 66.667 0.00 0.00 45.17 3.85
610 702 3.818787 CCGCAACAGGCAGCATCC 61.819 66.667 0.00 0.00 45.17 3.51
612 704 3.367743 CACCGCAACAGGCAGCAT 61.368 61.111 0.00 0.00 45.17 3.79
759 851 3.646715 TACAGTGCCCCAGTGCCC 61.647 66.667 0.21 0.00 38.26 5.36
760 852 2.359975 GTACAGTGCCCCAGTGCC 60.360 66.667 0.21 0.00 38.26 5.01
761 853 2.359975 GGTACAGTGCCCCAGTGC 60.360 66.667 0.00 0.00 38.26 4.40
762 854 0.038166 ATTGGTACAGTGCCCCAGTG 59.962 55.000 5.05 0.00 42.39 3.66
763 855 0.777446 AATTGGTACAGTGCCCCAGT 59.223 50.000 5.05 0.00 42.39 4.00
764 856 1.176527 CAATTGGTACAGTGCCCCAG 58.823 55.000 5.05 0.00 42.39 4.45
765 857 0.897863 GCAATTGGTACAGTGCCCCA 60.898 55.000 7.72 0.00 42.81 4.96
766 858 1.890174 GCAATTGGTACAGTGCCCC 59.110 57.895 7.72 0.00 42.81 5.80
767 859 1.241315 ACGCAATTGGTACAGTGCCC 61.241 55.000 7.72 0.00 44.82 5.36
779 871 1.214325 GCCGGGCTAAAACGCAATT 59.786 52.632 12.87 0.00 0.00 2.32
781 873 2.594882 TGCCGGGCTAAAACGCAA 60.595 55.556 21.46 0.00 0.00 4.85
783 875 3.810896 CCTGCCGGGCTAAAACGC 61.811 66.667 21.46 0.00 0.00 4.84
869 983 8.721478 CATGGATATAATTGACTAAAAGGACCG 58.279 37.037 0.00 0.00 0.00 4.79
879 993 8.923838 AGGACTATCCATGGATATAATTGACT 57.076 34.615 30.35 18.99 39.61 3.41
885 999 9.793259 GTCAAAAAGGACTATCCATGGATATAA 57.207 33.333 30.35 14.33 39.61 0.98
894 1008 7.004086 ACAGAATTGTCAAAAAGGACTATCCA 58.996 34.615 0.00 0.00 38.61 3.41
895 1009 7.454260 ACAGAATTGTCAAAAAGGACTATCC 57.546 36.000 0.00 0.00 38.61 2.59
896 1010 7.809806 CCAACAGAATTGTCAAAAAGGACTATC 59.190 37.037 0.00 0.00 36.23 2.08
897 1011 7.287696 ACCAACAGAATTGTCAAAAAGGACTAT 59.712 33.333 0.00 0.00 36.23 2.12
898 1012 6.605594 ACCAACAGAATTGTCAAAAAGGACTA 59.394 34.615 0.00 0.00 36.23 2.59
899 1013 5.422012 ACCAACAGAATTGTCAAAAAGGACT 59.578 36.000 0.00 0.00 36.23 3.85
900 1014 5.660460 ACCAACAGAATTGTCAAAAAGGAC 58.340 37.500 0.00 0.00 36.23 3.85
901 1015 5.420421 TGACCAACAGAATTGTCAAAAAGGA 59.580 36.000 0.00 0.00 36.23 3.36
902 1016 5.659463 TGACCAACAGAATTGTCAAAAAGG 58.341 37.500 0.00 0.00 36.23 3.11
916 1030 0.478507 AAGAACCCCCTGACCAACAG 59.521 55.000 0.00 0.00 45.36 3.16
917 1031 0.930726 AAAGAACCCCCTGACCAACA 59.069 50.000 0.00 0.00 0.00 3.33
918 1032 1.686587 CAAAAGAACCCCCTGACCAAC 59.313 52.381 0.00 0.00 0.00 3.77
919 1033 1.412361 CCAAAAGAACCCCCTGACCAA 60.412 52.381 0.00 0.00 0.00 3.67
920 1034 0.187361 CCAAAAGAACCCCCTGACCA 59.813 55.000 0.00 0.00 0.00 4.02
921 1035 0.481128 TCCAAAAGAACCCCCTGACC 59.519 55.000 0.00 0.00 0.00 4.02
922 1036 1.133606 TGTCCAAAAGAACCCCCTGAC 60.134 52.381 0.00 0.00 0.00 3.51
923 1037 1.227249 TGTCCAAAAGAACCCCCTGA 58.773 50.000 0.00 0.00 0.00 3.86
924 1038 2.080654 TTGTCCAAAAGAACCCCCTG 57.919 50.000 0.00 0.00 0.00 4.45
925 1039 2.858787 TTTGTCCAAAAGAACCCCCT 57.141 45.000 0.00 0.00 0.00 4.79
926 1040 3.916359 TTTTTGTCCAAAAGAACCCCC 57.084 42.857 5.45 0.00 40.83 5.40
944 1058 1.351017 TGCTCTCCCACTCCGATTTTT 59.649 47.619 0.00 0.00 0.00 1.94
945 1059 0.984230 TGCTCTCCCACTCCGATTTT 59.016 50.000 0.00 0.00 0.00 1.82
946 1060 1.207791 ATGCTCTCCCACTCCGATTT 58.792 50.000 0.00 0.00 0.00 2.17
947 1061 2.088104 TATGCTCTCCCACTCCGATT 57.912 50.000 0.00 0.00 0.00 3.34
948 1062 2.175202 GATATGCTCTCCCACTCCGAT 58.825 52.381 0.00 0.00 0.00 4.18
949 1063 1.145945 AGATATGCTCTCCCACTCCGA 59.854 52.381 0.00 0.00 0.00 4.55
950 1064 1.271934 CAGATATGCTCTCCCACTCCG 59.728 57.143 0.00 0.00 29.16 4.63
967 1081 2.500098 CCGAGTAGTCCCCAATTTCAGA 59.500 50.000 0.00 0.00 0.00 3.27
1001 1115 3.058708 CACAAAGCTCTCAAATCGCTTCA 60.059 43.478 0.00 0.00 42.65 3.02
1008 1122 0.883833 CCGGCACAAAGCTCTCAAAT 59.116 50.000 0.00 0.00 44.79 2.32
1011 1125 1.597854 CACCGGCACAAAGCTCTCA 60.598 57.895 0.00 0.00 44.79 3.27
1045 1159 2.435586 CTCCTGCCGTGCCTTCTG 60.436 66.667 0.00 0.00 0.00 3.02
1100 1214 4.560743 TCTGTGCCGCAAGCCACA 62.561 61.111 0.00 4.51 42.71 4.17
1102 1216 3.939939 TCTCTGTGCCGCAAGCCA 61.940 61.111 0.00 0.00 42.71 4.75
1103 1217 3.426568 GTCTCTGTGCCGCAAGCC 61.427 66.667 0.00 0.00 42.71 4.35
1129 1243 3.347405 CGGTAACCGGCGTTTGCA 61.347 61.111 6.01 0.00 44.15 4.08
1200 1314 1.463444 GGAAACTGAATCCGACAACCG 59.537 52.381 0.00 0.00 38.18 4.44
1400 2389 1.294780 CCGAGCAGACTGGAGCTTT 59.705 57.895 4.26 0.00 42.04 3.51
1433 2422 0.253044 TCTTCATTCTTGGGGAGCCG 59.747 55.000 0.00 0.00 0.00 5.52
1553 2552 5.017490 ACTAGTCTCTAGTTTTGCAGCCTA 58.983 41.667 3.91 0.00 0.00 3.93
1577 2576 7.301868 TCAAAACCCTGCTCTTATTCAAATT 57.698 32.000 0.00 0.00 0.00 1.82
1585 2584 3.244911 CCTTCCTCAAAACCCTGCTCTTA 60.245 47.826 0.00 0.00 0.00 2.10
1610 2609 3.053842 ACTGAATCAGGAATGTGCTCCAT 60.054 43.478 15.38 0.00 38.02 3.41
1708 2707 1.522355 CTCGACATGAAGCGGGCAT 60.522 57.895 0.00 0.00 0.00 4.40
1739 2738 3.636764 TCATATGTCTCGAGCCTTGCTAA 59.363 43.478 7.81 0.00 39.88 3.09
1894 2893 4.081420 TCTCTCTGCAAAGATTCTACACCC 60.081 45.833 0.00 0.00 0.00 4.61
1982 2981 2.954318 CAATAGCCTGGCAAGTAAGCAT 59.046 45.455 22.65 0.00 35.83 3.79
2023 3022 0.760945 GGTCCTCATCATCGACCCCT 60.761 60.000 0.00 0.00 40.23 4.79
2029 3028 0.598680 GCTTCCGGTCCTCATCATCG 60.599 60.000 0.00 0.00 0.00 3.84
2049 3048 1.591183 GCATCCGCAACCCATGTTT 59.409 52.632 0.00 0.00 38.36 2.83
2077 3076 6.285224 TGTCTCAATTGAACCTCTTTTCGTA 58.715 36.000 9.88 0.00 0.00 3.43
2084 3083 3.616076 CGAGCTGTCTCAATTGAACCTCT 60.616 47.826 9.88 9.57 39.30 3.69
2153 3152 0.732571 TGCGCTGCTTTAAGCCATAC 59.267 50.000 14.80 2.59 41.51 2.39
2167 3166 1.741032 GCTCTTCTCAAGCTGCGCT 60.741 57.895 9.73 0.00 42.56 5.92
2217 3217 6.225318 TGGATTGTACTTAACTGCGTTTAGT 58.775 36.000 14.22 14.22 38.60 2.24
2218 3218 6.715344 TGGATTGTACTTAACTGCGTTTAG 57.285 37.500 0.00 3.27 0.00 1.85
2223 3223 6.742718 CAGATTTTGGATTGTACTTAACTGCG 59.257 38.462 0.00 0.00 0.00 5.18
2226 3226 7.885399 AGCTCAGATTTTGGATTGTACTTAACT 59.115 33.333 0.00 0.00 0.00 2.24
2229 3229 7.168219 ACAGCTCAGATTTTGGATTGTACTTA 58.832 34.615 0.00 0.00 0.00 2.24
2245 3245 3.135348 AGCATAAGCCATAACAGCTCAGA 59.865 43.478 0.00 0.00 40.49 3.27
2250 3250 2.735823 GCAAGCATAAGCCATAACAGC 58.264 47.619 0.00 0.00 43.56 4.40
2271 3271 0.815734 CAGCCAGCCATTTCTCCTTG 59.184 55.000 0.00 0.00 0.00 3.61
2385 3385 1.000607 CTCTCCGGTTCGTTGTTCTCA 60.001 52.381 0.00 0.00 0.00 3.27
2434 3434 2.358721 CCCTCTCAGCTCCTCCTCTTTA 60.359 54.545 0.00 0.00 0.00 1.85
2480 3480 1.485066 TCGCATTTCCTAGTTCCCTCC 59.515 52.381 0.00 0.00 0.00 4.30
2498 3498 5.648092 ACAACCTCCTTAATTTCCTCATTCG 59.352 40.000 0.00 0.00 0.00 3.34
2510 3510 3.073946 CCTTCCTCCAACAACCTCCTTAA 59.926 47.826 0.00 0.00 0.00 1.85
2511 3511 2.642807 CCTTCCTCCAACAACCTCCTTA 59.357 50.000 0.00 0.00 0.00 2.69
2512 3512 1.425448 CCTTCCTCCAACAACCTCCTT 59.575 52.381 0.00 0.00 0.00 3.36
2513 3513 1.068121 CCTTCCTCCAACAACCTCCT 58.932 55.000 0.00 0.00 0.00 3.69
2546 3546 2.749621 ACCACAATTCGAAGAATGAGGC 59.250 45.455 18.23 0.00 45.90 4.70
2558 3558 3.699038 TGCCCTAGCATTAACCACAATTC 59.301 43.478 0.00 0.00 46.52 2.17
2634 3634 3.052082 CGGGGCAGTGCTTGAGTG 61.052 66.667 16.11 0.00 0.00 3.51
2732 3732 3.057245 GCTGGGTTCTTTTTCCTTGCTAG 60.057 47.826 0.00 0.00 0.00 3.42
2734 3734 1.688735 GCTGGGTTCTTTTTCCTTGCT 59.311 47.619 0.00 0.00 0.00 3.91
2792 3792 0.817634 TTGTTGTTCCCGTGCCTCAG 60.818 55.000 0.00 0.00 0.00 3.35
2878 3878 1.312815 GTGGCACCATCTCAATAGCC 58.687 55.000 6.29 0.00 42.32 3.93
2926 3928 2.905075 TGATCACACCTCTTTATGGCG 58.095 47.619 0.00 0.00 0.00 5.69
2929 3931 5.407691 CGGATCATGATCACACCTCTTTATG 59.592 44.000 31.49 2.63 39.54 1.90
3207 4209 2.435069 ACTCTCCTCAGAATGGCATCAG 59.565 50.000 0.00 0.00 36.16 2.90
3266 4278 6.383147 CCAGAACATTAAGGACTAGGGTTCTA 59.617 42.308 0.00 0.00 40.87 2.10
3314 4327 6.808008 ATACATGGAGGCAAATTTCTATCG 57.192 37.500 0.00 0.00 0.00 2.92
3366 4387 4.046938 AGGAGTAACTACATGACGCATG 57.953 45.455 15.34 15.34 46.18 4.06
3460 4485 2.051334 TAGCCACAACTTGCAACACT 57.949 45.000 0.00 0.00 0.00 3.55
3472 4505 5.604231 ACAGAGATCCTTAATGATAGCCACA 59.396 40.000 0.00 0.00 0.00 4.17
3473 4506 6.107901 ACAGAGATCCTTAATGATAGCCAC 57.892 41.667 0.00 0.00 0.00 5.01
3520 4570 8.133024 TCATAAAAATATCACCAAAACTGCCT 57.867 30.769 0.00 0.00 0.00 4.75
3556 4606 7.693969 ATTCAAACTCTGTAATCCTCTTTGG 57.306 36.000 0.00 0.00 37.10 3.28
3582 4632 7.803659 GCATAGTTAGAAAAGGTCAACAGTTTC 59.196 37.037 0.00 0.00 0.00 2.78
3622 4672 9.325198 GTTTCAAAAATGGTCTTAAAGAACCAT 57.675 29.630 9.83 9.83 37.57 3.55
3732 4796 2.952245 GCTGGCAGTGCTGTTCAG 59.048 61.111 17.16 14.31 37.20 3.02
3733 4797 2.974148 CGCTGGCAGTGCTGTTCA 60.974 61.111 16.01 3.18 0.00 3.18
3749 4813 4.082523 ACACCTGGATGGACGGCG 62.083 66.667 4.80 4.80 39.71 6.46
3750 4814 2.436646 CACACCTGGATGGACGGC 60.437 66.667 0.00 0.00 39.71 5.68
3751 4815 2.268920 CCACACCTGGATGGACGG 59.731 66.667 14.25 2.82 40.55 4.79
3752 4816 2.436646 GCCACACCTGGATGGACG 60.437 66.667 21.07 1.06 40.55 4.79
3753 4817 0.962356 CAAGCCACACCTGGATGGAC 60.962 60.000 21.07 13.71 40.55 4.02
3754 4818 1.379916 CAAGCCACACCTGGATGGA 59.620 57.895 21.07 0.00 40.55 3.41
3755 4819 1.679977 CCAAGCCACACCTGGATGG 60.680 63.158 14.88 14.88 40.55 3.51
3756 4820 0.679002 CTCCAAGCCACACCTGGATG 60.679 60.000 0.00 0.00 40.55 3.51
3757 4821 1.136329 ACTCCAAGCCACACCTGGAT 61.136 55.000 0.00 0.00 40.55 3.41
3758 4822 1.770110 ACTCCAAGCCACACCTGGA 60.770 57.895 0.00 0.00 40.55 3.86
3759 4823 1.601759 CACTCCAAGCCACACCTGG 60.602 63.158 0.00 0.00 41.13 4.45
3760 4824 0.396435 TACACTCCAAGCCACACCTG 59.604 55.000 0.00 0.00 0.00 4.00
3761 4825 1.362224 ATACACTCCAAGCCACACCT 58.638 50.000 0.00 0.00 0.00 4.00
3762 4826 1.812571 CAATACACTCCAAGCCACACC 59.187 52.381 0.00 0.00 0.00 4.16
3763 4827 1.200020 GCAATACACTCCAAGCCACAC 59.800 52.381 0.00 0.00 0.00 3.82
3764 4828 1.073763 AGCAATACACTCCAAGCCACA 59.926 47.619 0.00 0.00 0.00 4.17
3765 4829 1.826385 AGCAATACACTCCAAGCCAC 58.174 50.000 0.00 0.00 0.00 5.01
3766 4830 2.040278 AGAAGCAATACACTCCAAGCCA 59.960 45.455 0.00 0.00 0.00 4.75
3767 4831 2.716217 AGAAGCAATACACTCCAAGCC 58.284 47.619 0.00 0.00 0.00 4.35
3768 4832 7.553881 TTATAAGAAGCAATACACTCCAAGC 57.446 36.000 0.00 0.00 0.00 4.01
3770 4834 9.679661 TGAATTATAAGAAGCAATACACTCCAA 57.320 29.630 0.00 0.00 0.00 3.53
3771 4835 9.109393 GTGAATTATAAGAAGCAATACACTCCA 57.891 33.333 0.00 0.00 0.00 3.86
3772 4836 8.560374 GGTGAATTATAAGAAGCAATACACTCC 58.440 37.037 0.00 0.00 0.00 3.85
3773 4837 8.560374 GGGTGAATTATAAGAAGCAATACACTC 58.440 37.037 0.00 0.00 0.00 3.51
3774 4838 8.052748 TGGGTGAATTATAAGAAGCAATACACT 58.947 33.333 0.00 0.00 0.00 3.55
3775 4839 8.220755 TGGGTGAATTATAAGAAGCAATACAC 57.779 34.615 0.00 0.00 0.00 2.90
3776 4840 8.995027 ATGGGTGAATTATAAGAAGCAATACA 57.005 30.769 0.00 0.00 0.00 2.29
3780 4844 8.402472 CGTTTATGGGTGAATTATAAGAAGCAA 58.598 33.333 0.00 0.00 0.00 3.91
3781 4845 7.771361 TCGTTTATGGGTGAATTATAAGAAGCA 59.229 33.333 0.00 0.00 0.00 3.91
3782 4846 8.149973 TCGTTTATGGGTGAATTATAAGAAGC 57.850 34.615 0.00 0.00 0.00 3.86
3784 4848 9.839817 TCATCGTTTATGGGTGAATTATAAGAA 57.160 29.630 0.00 0.00 36.15 2.52
3785 4849 9.839817 TTCATCGTTTATGGGTGAATTATAAGA 57.160 29.630 0.00 0.00 36.15 2.10
3789 4853 9.748708 CAATTTCATCGTTTATGGGTGAATTAT 57.251 29.630 0.00 0.00 36.15 1.28
3790 4854 7.704472 GCAATTTCATCGTTTATGGGTGAATTA 59.296 33.333 0.00 0.00 36.15 1.40
3791 4855 6.534793 GCAATTTCATCGTTTATGGGTGAATT 59.465 34.615 0.00 0.00 36.15 2.17
3792 4856 6.042143 GCAATTTCATCGTTTATGGGTGAAT 58.958 36.000 0.00 0.00 36.15 2.57
3793 4857 5.047731 TGCAATTTCATCGTTTATGGGTGAA 60.048 36.000 0.00 0.00 36.15 3.18
3794 4858 4.460731 TGCAATTTCATCGTTTATGGGTGA 59.539 37.500 0.00 0.00 36.15 4.02
3795 4859 4.742417 TGCAATTTCATCGTTTATGGGTG 58.258 39.130 0.00 0.00 36.15 4.61
3796 4860 5.398603 TTGCAATTTCATCGTTTATGGGT 57.601 34.783 0.00 0.00 36.15 4.51
3797 4861 5.811613 ACATTGCAATTTCATCGTTTATGGG 59.188 36.000 9.83 0.00 36.15 4.00
3798 4862 6.698107 CACATTGCAATTTCATCGTTTATGG 58.302 36.000 9.83 0.00 36.15 2.74
3799 4863 6.179880 GCACATTGCAATTTCATCGTTTATG 58.820 36.000 9.83 0.00 44.26 1.90
3800 4864 6.335176 GCACATTGCAATTTCATCGTTTAT 57.665 33.333 9.83 0.00 44.26 1.40
3801 4865 5.760193 GCACATTGCAATTTCATCGTTTA 57.240 34.783 9.83 0.00 44.26 2.01
3802 4866 4.650545 GCACATTGCAATTTCATCGTTT 57.349 36.364 9.83 0.00 44.26 3.60
3815 4879 5.237127 TCAGCATACATAGTAAGCACATTGC 59.763 40.000 7.08 0.00 45.46 3.56
3816 4880 6.849588 TCAGCATACATAGTAAGCACATTG 57.150 37.500 7.08 0.00 0.00 2.82
3817 4881 7.219322 TGATCAGCATACATAGTAAGCACATT 58.781 34.615 7.08 0.00 0.00 2.71
3818 4882 6.762333 TGATCAGCATACATAGTAAGCACAT 58.238 36.000 7.08 0.00 0.00 3.21
3819 4883 6.160576 TGATCAGCATACATAGTAAGCACA 57.839 37.500 7.08 0.45 0.00 4.57
3820 4884 7.664082 AATGATCAGCATACATAGTAAGCAC 57.336 36.000 0.09 0.00 35.78 4.40
3821 4885 9.948964 ATAAATGATCAGCATACATAGTAAGCA 57.051 29.630 0.09 0.00 35.78 3.91
3830 4894 9.394767 ACTTTGTGTATAAATGATCAGCATACA 57.605 29.630 16.80 16.80 35.78 2.29
3834 4898 9.225436 TGTAACTTTGTGTATAAATGATCAGCA 57.775 29.630 0.09 0.00 0.00 4.41
3843 4907 8.832521 CCAGTCTGTTGTAACTTTGTGTATAAA 58.167 33.333 0.00 0.00 0.00 1.40
3844 4908 8.205512 TCCAGTCTGTTGTAACTTTGTGTATAA 58.794 33.333 0.00 0.00 0.00 0.98
3845 4909 7.654520 GTCCAGTCTGTTGTAACTTTGTGTATA 59.345 37.037 0.00 0.00 0.00 1.47
3846 4910 6.482308 GTCCAGTCTGTTGTAACTTTGTGTAT 59.518 38.462 0.00 0.00 0.00 2.29
3847 4911 5.813672 GTCCAGTCTGTTGTAACTTTGTGTA 59.186 40.000 0.00 0.00 0.00 2.90
3848 4912 4.634443 GTCCAGTCTGTTGTAACTTTGTGT 59.366 41.667 0.00 0.00 0.00 3.72
3849 4913 4.634004 TGTCCAGTCTGTTGTAACTTTGTG 59.366 41.667 0.00 0.00 0.00 3.33
3850 4914 4.839121 TGTCCAGTCTGTTGTAACTTTGT 58.161 39.130 0.00 0.00 0.00 2.83
3851 4915 4.260784 GCTGTCCAGTCTGTTGTAACTTTG 60.261 45.833 0.00 0.00 0.00 2.77
3852 4916 3.877508 GCTGTCCAGTCTGTTGTAACTTT 59.122 43.478 0.00 0.00 0.00 2.66
3853 4917 3.118408 TGCTGTCCAGTCTGTTGTAACTT 60.118 43.478 0.00 0.00 0.00 2.66
3854 4918 2.434336 TGCTGTCCAGTCTGTTGTAACT 59.566 45.455 0.00 0.00 0.00 2.24
3855 4919 2.544267 GTGCTGTCCAGTCTGTTGTAAC 59.456 50.000 0.00 0.00 0.00 2.50
3856 4920 2.434336 AGTGCTGTCCAGTCTGTTGTAA 59.566 45.455 0.00 0.00 0.00 2.41
3857 4921 2.039418 AGTGCTGTCCAGTCTGTTGTA 58.961 47.619 0.00 0.00 0.00 2.41
3858 4922 0.833287 AGTGCTGTCCAGTCTGTTGT 59.167 50.000 0.00 0.00 0.00 3.32
3859 4923 1.224075 CAGTGCTGTCCAGTCTGTTG 58.776 55.000 0.00 0.00 32.44 3.33
3860 4924 0.533755 GCAGTGCTGTCCAGTCTGTT 60.534 55.000 8.18 0.00 36.10 3.16
3861 4925 1.070445 GCAGTGCTGTCCAGTCTGT 59.930 57.895 8.18 0.00 36.10 3.41
3862 4926 0.605083 TAGCAGTGCTGTCCAGTCTG 59.395 55.000 27.97 13.29 40.10 3.51
3863 4927 0.894141 CTAGCAGTGCTGTCCAGTCT 59.106 55.000 27.97 0.00 40.10 3.24
3864 4928 0.739112 GCTAGCAGTGCTGTCCAGTC 60.739 60.000 27.97 9.17 40.10 3.51
3865 4929 1.294780 GCTAGCAGTGCTGTCCAGT 59.705 57.895 27.97 1.51 40.10 4.00
3949 5013 2.606308 GCATACATAGCAAGCACATGGC 60.606 50.000 0.00 0.00 45.30 4.40
3954 5018 3.811497 TGATCAGCATACATAGCAAGCAC 59.189 43.478 0.00 0.00 0.00 4.40
4021 5085 4.084328 GGTCTTCAGCGCACATATATGAAC 60.084 45.833 19.63 9.30 0.00 3.18
4046 5111 5.977635 TGATTCTACCACTGGTACATTCTG 58.022 41.667 3.57 0.00 38.20 3.02
4055 5120 4.256920 CTGGAAACTGATTCTACCACTGG 58.743 47.826 0.00 0.00 38.18 4.00
4070 5135 0.741915 TGTTTCGTTGGGCTGGAAAC 59.258 50.000 8.49 8.49 45.96 2.78
4131 5196 8.959734 AGTAGAAACAATGTTTTATAAACGCC 57.040 30.769 13.00 0.00 0.00 5.68
4187 5252 6.318900 GGAACCTGACCTTGGTAGAAAATATG 59.681 42.308 0.00 0.00 36.69 1.78
4242 5307 5.789643 ATTATCAGCAACCAACACAAGTT 57.210 34.783 0.00 0.00 38.88 2.66
4243 5308 5.509501 CCAATTATCAGCAACCAACACAAGT 60.510 40.000 0.00 0.00 0.00 3.16
4244 5309 4.925054 CCAATTATCAGCAACCAACACAAG 59.075 41.667 0.00 0.00 0.00 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.