Multiple sequence alignment - TraesCS4D01G326200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G326200 chr4D 100.000 4800 0 0 1 4800 486098448 486103247 0.000000e+00 8865
1 TraesCS4D01G326200 chr4D 92.081 2955 153 20 1489 4411 486319088 486316183 0.000000e+00 4085
2 TraesCS4D01G326200 chr4D 88.817 769 53 13 747 1498 486342642 486341890 0.000000e+00 913
3 TraesCS4D01G326200 chr4D 93.900 541 27 6 4262 4800 486316198 486315662 0.000000e+00 811
4 TraesCS4D01G326200 chr4D 95.510 245 9 1 338 582 24775852 24775610 1.620000e-104 390
5 TraesCS4D01G326200 chr5A 94.277 2516 131 6 1803 4313 666704985 666707492 0.000000e+00 3836
6 TraesCS4D01G326200 chr5A 86.515 1053 71 37 768 1808 666703123 666704116 0.000000e+00 1092
7 TraesCS4D01G326200 chr5A 96.053 76 2 1 4 79 666702789 666702863 6.520000e-24 122
8 TraesCS4D01G326200 chr5A 93.590 78 4 1 574 651 566553098 566553022 1.090000e-21 115
9 TraesCS4D01G326200 chr1D 90.854 2810 227 15 1211 3999 240587279 240590079 0.000000e+00 3738
10 TraesCS4D01G326200 chr1D 95.926 270 8 3 72 339 131288934 131289202 7.380000e-118 435
11 TraesCS4D01G326200 chr1D 90.127 314 23 8 105 414 121243836 121243527 7.480000e-108 401
12 TraesCS4D01G326200 chr1D 94.841 252 11 1 331 582 448103129 448103378 4.500000e-105 392
13 TraesCS4D01G326200 chr1D 89.091 165 13 4 1004 1168 240587029 240587188 2.930000e-47 200
14 TraesCS4D01G326200 chr1D 95.890 73 2 1 574 646 131289196 131289267 3.040000e-22 117
15 TraesCS4D01G326200 chr1B 90.638 2820 230 15 1214 4008 333633689 333630879 0.000000e+00 3714
16 TraesCS4D01G326200 chr1B 94.872 273 11 3 72 342 188175961 188175690 1.600000e-114 424
17 TraesCS4D01G326200 chr1B 90.323 155 12 2 1005 1158 333633941 333633789 2.930000e-47 200
18 TraesCS4D01G326200 chr1B 95.890 73 2 1 574 646 550865351 550865280 3.040000e-22 117
19 TraesCS4D01G326200 chr1A 90.642 2725 227 11 1154 3851 304996255 304998978 0.000000e+00 3594
20 TraesCS4D01G326200 chr1A 89.571 163 12 4 1005 1167 304996075 304996232 8.150000e-48 202
21 TraesCS4D01G326200 chr1A 94.872 78 2 2 574 651 399247038 399247113 2.350000e-23 121
22 TraesCS4D01G326200 chr5D 93.253 415 25 2 72 485 104492994 104493406 4.110000e-170 608
23 TraesCS4D01G326200 chr5D 92.958 142 4 1 479 614 104557708 104557849 8.150000e-48 202
24 TraesCS4D01G326200 chr7D 94.928 276 13 1 65 339 38518514 38518789 9.540000e-117 431
25 TraesCS4D01G326200 chr7D 89.905 317 25 6 73 383 562060259 562059944 7.480000e-108 401
26 TraesCS4D01G326200 chr7D 94.521 73 3 1 574 646 69453344 69453415 1.410000e-20 111
27 TraesCS4D01G326200 chr2D 95.539 269 10 2 73 339 14100514 14100782 3.430000e-116 429
28 TraesCS4D01G326200 chr2D 95.902 244 8 1 339 582 541547289 541547530 1.250000e-105 394
29 TraesCS4D01G326200 chr4A 95.185 270 12 1 71 339 7128775 7129044 4.440000e-115 425
30 TraesCS4D01G326200 chr4A 94.245 278 15 1 63 339 65514681 65514958 1.600000e-114 424
31 TraesCS4D01G326200 chr6B 95.547 247 9 1 336 582 347227398 347227154 1.250000e-105 394
32 TraesCS4D01G326200 chr5B 95.528 246 9 1 337 582 198382038 198381795 4.500000e-105 392
33 TraesCS4D01G326200 chr5B 93.590 78 2 3 574 649 423739071 423739147 3.930000e-21 113
34 TraesCS4D01G326200 chr3D 95.142 247 10 1 338 584 210642604 210642360 5.830000e-104 388
35 TraesCS4D01G326200 chr2B 95.492 244 9 1 339 582 135101660 135101419 5.830000e-104 388
36 TraesCS4D01G326200 chr2A 94.800 250 11 1 338 587 573237795 573237548 5.830000e-104 388
37 TraesCS4D01G326200 chr2A 91.566 83 3 4 574 653 742869603 742869522 1.410000e-20 111
38 TraesCS4D01G326200 chr7A 95.833 72 2 1 574 645 225005065 225005135 1.090000e-21 115


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G326200 chr4D 486098448 486103247 4799 False 8865.000000 8865 100.000000 1 4800 1 chr4D.!!$F1 4799
1 TraesCS4D01G326200 chr4D 486315662 486319088 3426 True 2448.000000 4085 92.990500 1489 4800 2 chr4D.!!$R3 3311
2 TraesCS4D01G326200 chr4D 486341890 486342642 752 True 913.000000 913 88.817000 747 1498 1 chr4D.!!$R2 751
3 TraesCS4D01G326200 chr5A 666702789 666707492 4703 False 1683.333333 3836 92.281667 4 4313 3 chr5A.!!$F1 4309
4 TraesCS4D01G326200 chr1D 240587029 240590079 3050 False 1969.000000 3738 89.972500 1004 3999 2 chr1D.!!$F3 2995
5 TraesCS4D01G326200 chr1B 333630879 333633941 3062 True 1957.000000 3714 90.480500 1005 4008 2 chr1B.!!$R3 3003
6 TraesCS4D01G326200 chr1A 304996075 304998978 2903 False 1898.000000 3594 90.106500 1005 3851 2 chr1A.!!$F2 2846

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
747 761 0.034670 AGCATTGCTCTCAACCCTCC 60.035 55.000 5.03 0.0 30.62 4.30 F
748 762 0.034670 GCATTGCTCTCAACCCTCCT 60.035 55.000 0.16 0.0 34.60 3.69 F
906 1080 0.104304 ATATCGAGTTGGCCACGGAC 59.896 55.000 3.88 0.0 0.00 4.79 F
1233 1454 0.388294 AAGGCGGCTACGAGGATAAC 59.612 55.000 13.71 0.0 44.60 1.89 F
2582 3714 1.079405 GACCGGAAGCGAACATGGA 60.079 57.895 9.46 0.0 0.00 3.41 F
3342 4478 0.317160 GGGAACAAAAAGGAAGCCGG 59.683 55.000 0.00 0.0 0.00 6.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1704 1956 0.034059 ACCTGTCCAACTTGAGCGAG 59.966 55.000 0.00 0.00 0.00 5.03 R
2017 3143 0.615331 TGACTGCCTTGGACTCATCC 59.385 55.000 0.00 0.00 46.48 3.51 R
2281 3407 3.969312 TCCTTGCCTGATCATATGTCTCA 59.031 43.478 1.90 6.59 0.00 3.27 R
3054 4190 2.829023 ACGAGGGGAATAACTTCAGGA 58.171 47.619 0.00 0.00 32.70 3.86 R
3652 4788 0.032403 TTGGTTCAGCTGCAATGCAC 59.968 50.000 9.47 1.45 33.79 4.57 R
4244 5395 1.064906 CATGTCCATCCCAAGCTCTGT 60.065 52.381 0.00 0.00 0.00 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
65 66 6.153680 ACGGTGATGTAAAATCTTCTCTCTCT 59.846 38.462 0.00 0.00 0.00 3.10
68 69 9.308318 GGTGATGTAAAATCTTCTCTCTCTTAC 57.692 37.037 0.00 0.00 0.00 2.34
93 94 9.820725 ACCTTACTAATAATAATGTACGTGCAA 57.179 29.630 11.22 0.00 0.00 4.08
97 98 8.148807 ACTAATAATAATGTACGTGCAATGCA 57.851 30.769 11.22 2.72 35.60 3.96
113 114 7.184800 TGCAATGCACGTTTATATTAGGTAG 57.815 36.000 2.72 0.00 31.71 3.18
114 115 6.203915 TGCAATGCACGTTTATATTAGGTAGG 59.796 38.462 2.72 0.00 31.71 3.18
115 116 6.425721 GCAATGCACGTTTATATTAGGTAGGA 59.574 38.462 0.00 0.00 0.00 2.94
116 117 7.119262 GCAATGCACGTTTATATTAGGTAGGAT 59.881 37.037 0.00 0.00 0.00 3.24
117 118 9.647797 CAATGCACGTTTATATTAGGTAGGATA 57.352 33.333 0.00 0.00 0.00 2.59
129 130 6.720112 TTAGGTAGGATATTAGTTGCACGT 57.280 37.500 0.00 0.00 0.00 4.49
130 131 5.609533 AGGTAGGATATTAGTTGCACGTT 57.390 39.130 0.00 0.00 0.00 3.99
131 132 6.720112 AGGTAGGATATTAGTTGCACGTTA 57.280 37.500 0.00 0.00 0.00 3.18
132 133 7.299246 AGGTAGGATATTAGTTGCACGTTAT 57.701 36.000 0.00 0.00 0.00 1.89
133 134 8.413309 AGGTAGGATATTAGTTGCACGTTATA 57.587 34.615 0.00 0.00 0.00 0.98
134 135 9.032624 AGGTAGGATATTAGTTGCACGTTATAT 57.967 33.333 0.00 0.00 0.00 0.86
135 136 9.649167 GGTAGGATATTAGTTGCACGTTATATT 57.351 33.333 0.00 0.00 0.00 1.28
159 160 9.929180 ATTATGTAAGATATATCTGTTGCACGT 57.071 29.630 16.01 11.86 37.19 4.49
160 161 9.758651 TTATGTAAGATATATCTGTTGCACGTT 57.241 29.630 16.01 0.00 37.19 3.99
161 162 7.463469 TGTAAGATATATCTGTTGCACGTTG 57.537 36.000 16.01 0.00 37.19 4.10
162 163 5.991328 AAGATATATCTGTTGCACGTTGG 57.009 39.130 16.01 0.00 37.19 3.77
163 164 5.023533 AGATATATCTGTTGCACGTTGGT 57.976 39.130 14.60 0.00 35.42 3.67
164 165 6.156748 AGATATATCTGTTGCACGTTGGTA 57.843 37.500 14.60 0.00 35.42 3.25
165 166 6.759272 AGATATATCTGTTGCACGTTGGTAT 58.241 36.000 14.60 0.00 35.42 2.73
166 167 7.217200 AGATATATCTGTTGCACGTTGGTATT 58.783 34.615 14.60 0.00 35.42 1.89
167 168 7.715249 AGATATATCTGTTGCACGTTGGTATTT 59.285 33.333 14.60 0.00 35.42 1.40
168 169 3.617540 TCTGTTGCACGTTGGTATTTG 57.382 42.857 0.00 0.00 0.00 2.32
169 170 2.292016 TCTGTTGCACGTTGGTATTTGG 59.708 45.455 0.00 0.00 0.00 3.28
170 171 2.025155 TGTTGCACGTTGGTATTTGGT 58.975 42.857 0.00 0.00 0.00 3.67
171 172 3.211865 TGTTGCACGTTGGTATTTGGTA 58.788 40.909 0.00 0.00 0.00 3.25
172 173 3.630769 TGTTGCACGTTGGTATTTGGTAA 59.369 39.130 0.00 0.00 0.00 2.85
173 174 4.223659 GTTGCACGTTGGTATTTGGTAAG 58.776 43.478 0.00 0.00 0.00 2.34
174 175 3.741249 TGCACGTTGGTATTTGGTAAGA 58.259 40.909 0.00 0.00 0.00 2.10
175 176 4.328536 TGCACGTTGGTATTTGGTAAGAT 58.671 39.130 0.00 0.00 0.00 2.40
176 177 5.489249 TGCACGTTGGTATTTGGTAAGATA 58.511 37.500 0.00 0.00 0.00 1.98
177 178 6.116806 TGCACGTTGGTATTTGGTAAGATAT 58.883 36.000 0.00 0.00 0.00 1.63
178 179 6.259167 TGCACGTTGGTATTTGGTAAGATATC 59.741 38.462 0.00 0.00 0.00 1.63
179 180 6.259167 GCACGTTGGTATTTGGTAAGATATCA 59.741 38.462 5.32 0.00 0.00 2.15
180 181 7.201661 GCACGTTGGTATTTGGTAAGATATCAA 60.202 37.037 5.32 0.00 0.00 2.57
181 182 8.836413 CACGTTGGTATTTGGTAAGATATCAAT 58.164 33.333 5.32 0.00 33.02 2.57
182 183 9.403583 ACGTTGGTATTTGGTAAGATATCAATT 57.596 29.630 5.32 0.00 33.02 2.32
192 193 9.997482 TTGGTAAGATATCAATTACTTTTTCGC 57.003 29.630 5.32 0.00 33.36 4.70
193 194 8.332464 TGGTAAGATATCAATTACTTTTTCGCG 58.668 33.333 0.00 0.00 33.36 5.87
194 195 7.797123 GGTAAGATATCAATTACTTTTTCGCGG 59.203 37.037 6.13 0.00 33.36 6.46
195 196 6.300354 AGATATCAATTACTTTTTCGCGGG 57.700 37.500 6.13 0.00 0.00 6.13
196 197 6.053005 AGATATCAATTACTTTTTCGCGGGA 58.947 36.000 6.13 0.00 0.00 5.14
197 198 6.540914 AGATATCAATTACTTTTTCGCGGGAA 59.459 34.615 11.32 11.32 0.00 3.97
198 199 5.576447 ATCAATTACTTTTTCGCGGGAAT 57.424 34.783 16.24 3.49 30.88 3.01
199 200 4.728534 TCAATTACTTTTTCGCGGGAATG 58.271 39.130 16.24 8.61 30.88 2.67
200 201 3.775661 ATTACTTTTTCGCGGGAATGG 57.224 42.857 16.24 11.05 30.88 3.16
201 202 2.188062 TACTTTTTCGCGGGAATGGT 57.812 45.000 16.24 15.65 30.88 3.55
202 203 2.188062 ACTTTTTCGCGGGAATGGTA 57.812 45.000 16.24 0.00 30.88 3.25
203 204 2.081462 ACTTTTTCGCGGGAATGGTAG 58.919 47.619 16.24 12.35 30.88 3.18
204 205 1.400494 CTTTTTCGCGGGAATGGTAGG 59.600 52.381 16.24 0.00 30.88 3.18
205 206 0.614294 TTTTCGCGGGAATGGTAGGA 59.386 50.000 16.24 0.00 30.88 2.94
206 207 0.834612 TTTCGCGGGAATGGTAGGAT 59.165 50.000 16.24 0.00 30.88 3.24
207 208 1.707106 TTCGCGGGAATGGTAGGATA 58.293 50.000 11.32 0.00 0.00 2.59
208 209 1.933021 TCGCGGGAATGGTAGGATAT 58.067 50.000 6.13 0.00 0.00 1.63
209 210 2.253610 TCGCGGGAATGGTAGGATATT 58.746 47.619 6.13 0.00 0.00 1.28
210 211 3.433343 TCGCGGGAATGGTAGGATATTA 58.567 45.455 6.13 0.00 0.00 0.98
211 212 3.833650 TCGCGGGAATGGTAGGATATTAA 59.166 43.478 6.13 0.00 0.00 1.40
212 213 4.468510 TCGCGGGAATGGTAGGATATTAAT 59.531 41.667 6.13 0.00 0.00 1.40
213 214 5.046159 TCGCGGGAATGGTAGGATATTAATT 60.046 40.000 6.13 0.00 0.00 1.40
214 215 6.154877 TCGCGGGAATGGTAGGATATTAATTA 59.845 38.462 6.13 0.00 0.00 1.40
215 216 6.257193 CGCGGGAATGGTAGGATATTAATTAC 59.743 42.308 0.00 0.00 0.00 1.89
216 217 7.107542 GCGGGAATGGTAGGATATTAATTACA 58.892 38.462 0.00 0.00 0.00 2.41
217 218 7.773690 GCGGGAATGGTAGGATATTAATTACAT 59.226 37.037 0.00 0.00 0.00 2.29
218 219 9.109393 CGGGAATGGTAGGATATTAATTACATG 57.891 37.037 0.00 0.00 0.00 3.21
219 220 9.408648 GGGAATGGTAGGATATTAATTACATGG 57.591 37.037 0.00 0.00 0.00 3.66
220 221 8.903820 GGAATGGTAGGATATTAATTACATGGC 58.096 37.037 0.00 0.00 0.00 4.40
221 222 9.461312 GAATGGTAGGATATTAATTACATGGCA 57.539 33.333 0.00 0.00 0.00 4.92
222 223 9.466497 AATGGTAGGATATTAATTACATGGCAG 57.534 33.333 0.00 0.00 0.00 4.85
223 224 8.213489 TGGTAGGATATTAATTACATGGCAGA 57.787 34.615 0.00 0.00 0.00 4.26
224 225 8.835734 TGGTAGGATATTAATTACATGGCAGAT 58.164 33.333 0.00 0.00 0.00 2.90
225 226 9.686683 GGTAGGATATTAATTACATGGCAGATT 57.313 33.333 0.00 0.00 0.00 2.40
228 229 9.812347 AGGATATTAATTACATGGCAGATTTCA 57.188 29.630 0.00 0.00 0.00 2.69
232 233 7.894753 TTAATTACATGGCAGATTTCATGGA 57.105 32.000 0.00 0.00 43.49 3.41
233 234 6.989155 AATTACATGGCAGATTTCATGGAT 57.011 33.333 0.00 0.00 43.49 3.41
234 235 9.585369 TTAATTACATGGCAGATTTCATGGATA 57.415 29.630 0.00 0.00 43.49 2.59
235 236 7.698506 ATTACATGGCAGATTTCATGGATAG 57.301 36.000 0.00 0.00 43.49 2.08
236 237 3.825014 ACATGGCAGATTTCATGGATAGC 59.175 43.478 0.00 0.00 43.49 2.97
237 238 2.497138 TGGCAGATTTCATGGATAGCG 58.503 47.619 0.00 0.00 0.00 4.26
238 239 2.158769 TGGCAGATTTCATGGATAGCGT 60.159 45.455 0.00 0.00 0.00 5.07
239 240 2.880890 GGCAGATTTCATGGATAGCGTT 59.119 45.455 0.00 0.00 0.00 4.84
240 241 3.304257 GGCAGATTTCATGGATAGCGTTG 60.304 47.826 0.00 0.00 0.00 4.10
241 242 3.561310 GCAGATTTCATGGATAGCGTTGA 59.439 43.478 0.00 0.00 0.00 3.18
242 243 4.319333 GCAGATTTCATGGATAGCGTTGAG 60.319 45.833 0.00 0.00 0.00 3.02
243 244 4.813161 CAGATTTCATGGATAGCGTTGAGT 59.187 41.667 0.00 0.00 0.00 3.41
244 245 5.050499 CAGATTTCATGGATAGCGTTGAGTC 60.050 44.000 0.00 0.00 0.00 3.36
245 246 3.885724 TTCATGGATAGCGTTGAGTCA 57.114 42.857 0.00 0.00 0.00 3.41
246 247 3.885724 TCATGGATAGCGTTGAGTCAA 57.114 42.857 0.08 0.08 0.00 3.18
247 248 4.200838 TCATGGATAGCGTTGAGTCAAA 57.799 40.909 7.25 0.00 0.00 2.69
248 249 4.574892 TCATGGATAGCGTTGAGTCAAAA 58.425 39.130 7.25 0.00 0.00 2.44
249 250 4.391830 TCATGGATAGCGTTGAGTCAAAAC 59.608 41.667 7.25 2.62 0.00 2.43
250 251 3.734463 TGGATAGCGTTGAGTCAAAACA 58.266 40.909 7.25 0.00 0.00 2.83
251 252 3.496884 TGGATAGCGTTGAGTCAAAACAC 59.503 43.478 7.25 0.00 0.00 3.32
252 253 3.423123 GGATAGCGTTGAGTCAAAACACG 60.423 47.826 7.25 8.92 0.00 4.49
253 254 1.365699 AGCGTTGAGTCAAAACACGT 58.634 45.000 7.25 0.00 0.00 4.49
254 255 1.735571 AGCGTTGAGTCAAAACACGTT 59.264 42.857 7.25 2.74 0.00 3.99
255 256 2.160813 AGCGTTGAGTCAAAACACGTTT 59.839 40.909 7.25 0.00 0.00 3.60
256 257 2.524699 GCGTTGAGTCAAAACACGTTTC 59.475 45.455 7.25 0.00 31.45 2.78
257 258 3.726782 GCGTTGAGTCAAAACACGTTTCT 60.727 43.478 7.25 0.00 31.45 2.52
258 259 4.492895 GCGTTGAGTCAAAACACGTTTCTA 60.493 41.667 7.25 0.00 31.45 2.10
259 260 5.552807 CGTTGAGTCAAAACACGTTTCTAA 58.447 37.500 7.25 0.00 31.45 2.10
260 261 5.446899 CGTTGAGTCAAAACACGTTTCTAAC 59.553 40.000 7.25 0.00 31.45 2.34
261 262 5.473796 TGAGTCAAAACACGTTTCTAACC 57.526 39.130 0.00 0.00 31.45 2.85
262 263 4.936411 TGAGTCAAAACACGTTTCTAACCA 59.064 37.500 0.00 0.00 31.45 3.67
263 264 5.411977 TGAGTCAAAACACGTTTCTAACCAA 59.588 36.000 0.00 0.00 31.45 3.67
264 265 6.094325 TGAGTCAAAACACGTTTCTAACCAAT 59.906 34.615 0.00 0.00 31.45 3.16
265 266 6.262601 AGTCAAAACACGTTTCTAACCAATG 58.737 36.000 0.00 0.00 31.45 2.82
266 267 5.457473 GTCAAAACACGTTTCTAACCAATGG 59.543 40.000 0.00 0.00 31.45 3.16
267 268 3.636282 AACACGTTTCTAACCAATGGC 57.364 42.857 0.00 0.00 0.00 4.40
268 269 2.577700 ACACGTTTCTAACCAATGGCA 58.422 42.857 0.00 0.00 0.00 4.92
269 270 2.552315 ACACGTTTCTAACCAATGGCAG 59.448 45.455 0.00 0.00 0.00 4.85
270 271 2.552315 CACGTTTCTAACCAATGGCAGT 59.448 45.455 0.00 0.00 0.00 4.40
271 272 2.552315 ACGTTTCTAACCAATGGCAGTG 59.448 45.455 8.18 8.18 0.00 3.66
272 273 2.095263 CGTTTCTAACCAATGGCAGTGG 60.095 50.000 30.65 30.65 42.28 4.00
277 278 2.118076 CCAATGGCAGTGGTGGGT 59.882 61.111 25.07 0.00 0.00 4.51
278 279 1.382240 CCAATGGCAGTGGTGGGTA 59.618 57.895 25.07 0.00 0.00 3.69
279 280 0.251564 CCAATGGCAGTGGTGGGTAA 60.252 55.000 25.07 0.00 0.00 2.85
280 281 1.619432 CCAATGGCAGTGGTGGGTAAT 60.619 52.381 25.07 0.00 0.00 1.89
281 282 2.178580 CAATGGCAGTGGTGGGTAATT 58.821 47.619 7.12 0.00 0.00 1.40
282 283 3.360867 CAATGGCAGTGGTGGGTAATTA 58.639 45.455 7.12 0.00 0.00 1.40
283 284 2.799126 TGGCAGTGGTGGGTAATTAG 57.201 50.000 0.00 0.00 0.00 1.73
284 285 2.270858 TGGCAGTGGTGGGTAATTAGA 58.729 47.619 0.00 0.00 0.00 2.10
285 286 2.238646 TGGCAGTGGTGGGTAATTAGAG 59.761 50.000 0.00 0.00 0.00 2.43
286 287 2.289565 GCAGTGGTGGGTAATTAGAGC 58.710 52.381 0.00 0.00 0.00 4.09
287 288 2.550978 CAGTGGTGGGTAATTAGAGCG 58.449 52.381 0.00 0.00 0.00 5.03
288 289 2.093658 CAGTGGTGGGTAATTAGAGCGT 60.094 50.000 0.00 0.00 0.00 5.07
289 290 2.570302 AGTGGTGGGTAATTAGAGCGTT 59.430 45.455 0.00 0.00 0.00 4.84
290 291 3.770933 AGTGGTGGGTAATTAGAGCGTTA 59.229 43.478 0.00 0.00 0.00 3.18
291 292 4.223477 AGTGGTGGGTAATTAGAGCGTTAA 59.777 41.667 0.00 0.00 0.00 2.01
292 293 4.937015 GTGGTGGGTAATTAGAGCGTTAAA 59.063 41.667 0.00 0.00 0.00 1.52
293 294 4.937015 TGGTGGGTAATTAGAGCGTTAAAC 59.063 41.667 0.00 0.00 0.00 2.01
294 295 4.033243 GGTGGGTAATTAGAGCGTTAAACG 59.967 45.833 0.00 0.00 45.88 3.60
295 296 4.627035 GTGGGTAATTAGAGCGTTAAACGT 59.373 41.667 0.00 0.00 44.73 3.99
296 297 4.626604 TGGGTAATTAGAGCGTTAAACGTG 59.373 41.667 0.00 0.00 44.73 4.49
297 298 4.627035 GGGTAATTAGAGCGTTAAACGTGT 59.373 41.667 0.00 0.00 44.73 4.49
298 299 5.120674 GGGTAATTAGAGCGTTAAACGTGTT 59.879 40.000 0.00 0.00 44.73 3.32
299 300 6.347644 GGGTAATTAGAGCGTTAAACGTGTTT 60.348 38.462 3.21 3.21 44.73 2.83
300 301 6.517374 GGTAATTAGAGCGTTAAACGTGTTTG 59.483 38.462 8.19 0.00 44.73 2.93
301 302 4.455917 TTAGAGCGTTAAACGTGTTTGG 57.544 40.909 8.19 0.00 44.73 3.28
302 303 2.282407 AGAGCGTTAAACGTGTTTGGT 58.718 42.857 8.19 0.00 44.73 3.67
303 304 3.456280 AGAGCGTTAAACGTGTTTGGTA 58.544 40.909 8.19 0.00 44.73 3.25
304 305 3.245990 AGAGCGTTAAACGTGTTTGGTAC 59.754 43.478 8.19 3.47 44.73 3.34
305 306 3.197265 AGCGTTAAACGTGTTTGGTACT 58.803 40.909 8.19 0.00 44.73 2.73
306 307 3.245990 AGCGTTAAACGTGTTTGGTACTC 59.754 43.478 8.19 0.24 44.73 2.59
307 308 3.001127 GCGTTAAACGTGTTTGGTACTCA 59.999 43.478 8.19 0.00 44.73 3.41
308 309 4.493872 GCGTTAAACGTGTTTGGTACTCAA 60.494 41.667 8.19 0.00 44.73 3.02
309 310 4.957372 CGTTAAACGTGTTTGGTACTCAAC 59.043 41.667 8.19 2.43 36.74 3.18
310 311 5.445673 CGTTAAACGTGTTTGGTACTCAACA 60.446 40.000 8.19 6.37 36.74 3.33
311 312 6.488817 GTTAAACGTGTTTGGTACTCAACAT 58.511 36.000 8.19 1.98 34.67 2.71
312 313 5.570234 AAACGTGTTTGGTACTCAACATT 57.430 34.783 11.86 3.44 34.67 2.71
313 314 6.680874 AAACGTGTTTGGTACTCAACATTA 57.319 33.333 11.86 0.00 34.67 1.90
314 315 5.917541 ACGTGTTTGGTACTCAACATTAG 57.082 39.130 11.86 9.69 34.67 1.73
315 316 5.603596 ACGTGTTTGGTACTCAACATTAGA 58.396 37.500 11.86 0.00 34.67 2.10
316 317 5.694910 ACGTGTTTGGTACTCAACATTAGAG 59.305 40.000 11.86 0.00 39.04 2.43
317 318 5.389516 CGTGTTTGGTACTCAACATTAGAGC 60.390 44.000 11.86 0.98 36.58 4.09
318 319 4.688879 TGTTTGGTACTCAACATTAGAGCG 59.311 41.667 6.37 0.00 36.58 5.03
319 320 4.794278 TTGGTACTCAACATTAGAGCGA 57.206 40.909 0.00 0.00 36.58 4.93
320 321 5.339008 TTGGTACTCAACATTAGAGCGAT 57.661 39.130 0.00 0.00 36.58 4.58
321 322 5.339008 TGGTACTCAACATTAGAGCGATT 57.661 39.130 0.00 0.00 36.58 3.34
322 323 5.730550 TGGTACTCAACATTAGAGCGATTT 58.269 37.500 0.00 0.00 36.58 2.17
323 324 5.580691 TGGTACTCAACATTAGAGCGATTTG 59.419 40.000 0.00 0.00 36.58 2.32
324 325 5.810587 GGTACTCAACATTAGAGCGATTTGA 59.189 40.000 0.00 0.00 36.58 2.69
325 326 6.312918 GGTACTCAACATTAGAGCGATTTGAA 59.687 38.462 0.00 0.00 36.58 2.69
326 327 6.170675 ACTCAACATTAGAGCGATTTGAAC 57.829 37.500 0.00 0.00 36.58 3.18
327 328 5.122396 ACTCAACATTAGAGCGATTTGAACC 59.878 40.000 0.00 0.00 36.58 3.62
328 329 4.092821 TCAACATTAGAGCGATTTGAACCG 59.907 41.667 0.00 0.00 0.00 4.44
337 338 4.116713 GCGATTTGAACCGCTAGATAAC 57.883 45.455 0.00 0.00 46.96 1.89
338 339 3.554324 GCGATTTGAACCGCTAGATAACA 59.446 43.478 0.00 0.00 46.96 2.41
339 340 4.550255 GCGATTTGAACCGCTAGATAACAC 60.550 45.833 0.00 0.00 46.96 3.32
340 341 4.804139 CGATTTGAACCGCTAGATAACACT 59.196 41.667 0.00 0.00 0.00 3.55
341 342 5.975344 CGATTTGAACCGCTAGATAACACTA 59.025 40.000 0.00 0.00 0.00 2.74
342 343 6.142480 CGATTTGAACCGCTAGATAACACTAG 59.858 42.308 0.00 0.00 41.70 2.57
343 344 5.909621 TTGAACCGCTAGATAACACTAGT 57.090 39.130 0.00 0.00 41.10 2.57
344 345 5.496133 TGAACCGCTAGATAACACTAGTC 57.504 43.478 0.00 0.00 41.10 2.59
345 346 4.945543 TGAACCGCTAGATAACACTAGTCA 59.054 41.667 0.00 0.00 41.10 3.41
346 347 5.416639 TGAACCGCTAGATAACACTAGTCAA 59.583 40.000 0.00 0.00 41.10 3.18
347 348 6.096423 TGAACCGCTAGATAACACTAGTCAAT 59.904 38.462 0.00 0.00 41.10 2.57
348 349 5.833082 ACCGCTAGATAACACTAGTCAATG 58.167 41.667 0.00 0.00 41.10 2.82
349 350 5.360144 ACCGCTAGATAACACTAGTCAATGT 59.640 40.000 0.00 0.00 41.10 2.71
350 351 5.687730 CCGCTAGATAACACTAGTCAATGTG 59.312 44.000 0.00 0.00 41.10 3.21
352 353 7.415229 CGCTAGATAACACTAGTCAATGTGTA 58.585 38.462 0.00 0.00 45.33 2.90
353 354 7.376336 CGCTAGATAACACTAGTCAATGTGTAC 59.624 40.741 0.00 0.00 45.33 2.90
354 355 7.376336 GCTAGATAACACTAGTCAATGTGTACG 59.624 40.741 0.00 0.00 45.33 3.67
355 356 7.154435 AGATAACACTAGTCAATGTGTACGT 57.846 36.000 0.00 0.00 45.33 3.57
356 357 7.027760 AGATAACACTAGTCAATGTGTACGTG 58.972 38.462 0.00 0.00 45.33 4.49
357 358 3.314553 ACACTAGTCAATGTGTACGTGC 58.685 45.455 0.00 0.00 44.40 5.34
358 359 3.243602 ACACTAGTCAATGTGTACGTGCA 60.244 43.478 0.82 0.82 44.40 4.57
359 360 3.738791 CACTAGTCAATGTGTACGTGCAA 59.261 43.478 8.25 0.00 0.00 4.08
360 361 4.388773 CACTAGTCAATGTGTACGTGCAAT 59.611 41.667 8.25 1.77 0.00 3.56
361 362 3.811722 AGTCAATGTGTACGTGCAATG 57.188 42.857 8.25 8.35 0.00 2.82
362 363 2.095768 AGTCAATGTGTACGTGCAATGC 60.096 45.455 8.25 0.00 0.00 3.56
363 364 1.876156 TCAATGTGTACGTGCAATGCA 59.124 42.857 8.25 2.72 35.60 3.96
375 376 3.650070 TGCAATGCACGTTAATTTGGA 57.350 38.095 2.72 0.00 31.71 3.53
376 377 3.982475 TGCAATGCACGTTAATTTGGAA 58.018 36.364 2.72 0.00 31.71 3.53
377 378 3.986572 TGCAATGCACGTTAATTTGGAAG 59.013 39.130 2.72 0.00 31.71 3.46
378 379 3.987220 GCAATGCACGTTAATTTGGAAGT 59.013 39.130 0.00 0.00 0.00 3.01
379 380 5.157781 GCAATGCACGTTAATTTGGAAGTA 58.842 37.500 0.00 0.00 0.00 2.24
380 381 5.804979 GCAATGCACGTTAATTTGGAAGTAT 59.195 36.000 0.00 0.00 0.00 2.12
381 382 6.970043 GCAATGCACGTTAATTTGGAAGTATA 59.030 34.615 0.00 0.00 0.00 1.47
382 383 7.647715 GCAATGCACGTTAATTTGGAAGTATAT 59.352 33.333 0.00 0.00 0.00 0.86
396 397 7.595311 TGGAAGTATATATTAAGTGCATGCG 57.405 36.000 14.09 0.00 0.00 4.73
397 398 6.593770 TGGAAGTATATATTAAGTGCATGCGG 59.406 38.462 14.09 0.00 0.00 5.69
398 399 6.816640 GGAAGTATATATTAAGTGCATGCGGA 59.183 38.462 14.09 0.00 0.00 5.54
399 400 7.495934 GGAAGTATATATTAAGTGCATGCGGAT 59.504 37.037 14.09 3.59 0.00 4.18
400 401 9.529325 GAAGTATATATTAAGTGCATGCGGATA 57.471 33.333 14.09 6.94 0.00 2.59
406 407 8.792830 ATATTAAGTGCATGCGGATATTAAGT 57.207 30.769 14.09 4.58 0.00 2.24
407 408 9.884636 ATATTAAGTGCATGCGGATATTAAGTA 57.115 29.630 14.09 8.17 0.00 2.24
408 409 7.652300 TTAAGTGCATGCGGATATTAAGTAG 57.348 36.000 14.09 0.00 0.00 2.57
409 410 4.569943 AGTGCATGCGGATATTAAGTAGG 58.430 43.478 14.09 0.00 0.00 3.18
410 411 4.283467 AGTGCATGCGGATATTAAGTAGGA 59.717 41.667 14.09 0.00 0.00 2.94
411 412 5.046304 AGTGCATGCGGATATTAAGTAGGAT 60.046 40.000 14.09 0.00 0.00 3.24
412 413 6.154534 AGTGCATGCGGATATTAAGTAGGATA 59.845 38.462 14.09 0.00 0.00 2.59
413 414 6.986817 GTGCATGCGGATATTAAGTAGGATAT 59.013 38.462 14.09 0.00 0.00 1.63
414 415 7.495934 GTGCATGCGGATATTAAGTAGGATATT 59.504 37.037 14.09 0.00 0.00 1.28
415 416 8.046708 TGCATGCGGATATTAAGTAGGATATTT 58.953 33.333 14.09 0.00 0.00 1.40
416 417 8.893727 GCATGCGGATATTAAGTAGGATATTTT 58.106 33.333 0.00 0.00 0.00 1.82
439 440 7.962934 TTTTGCGTGTTATTATGTGATTAGC 57.037 32.000 0.00 0.00 0.00 3.09
440 441 6.670077 TTGCGTGTTATTATGTGATTAGCA 57.330 33.333 0.00 0.00 0.00 3.49
468 469 6.645700 ATTTGGCATAAAATTAACTGCACG 57.354 33.333 7.93 0.00 36.34 5.34
469 470 3.506810 TGGCATAAAATTAACTGCACGC 58.493 40.909 7.93 0.00 36.34 5.34
470 471 3.192422 TGGCATAAAATTAACTGCACGCT 59.808 39.130 7.93 0.00 36.34 5.07
471 472 4.396478 TGGCATAAAATTAACTGCACGCTA 59.604 37.500 7.93 0.00 36.34 4.26
472 473 5.106118 TGGCATAAAATTAACTGCACGCTAA 60.106 36.000 7.93 0.00 36.34 3.09
473 474 5.802956 GGCATAAAATTAACTGCACGCTAAA 59.197 36.000 7.93 0.00 36.34 1.85
474 475 6.237463 GGCATAAAATTAACTGCACGCTAAAC 60.237 38.462 7.93 0.00 36.34 2.01
485 486 3.345087 CGCTAAACGTGTTGAGTGC 57.655 52.632 0.00 0.00 36.87 4.40
486 487 0.859232 CGCTAAACGTGTTGAGTGCT 59.141 50.000 0.00 0.00 36.87 4.40
487 488 1.136611 CGCTAAACGTGTTGAGTGCTC 60.137 52.381 0.00 0.00 36.87 4.26
488 489 1.136611 GCTAAACGTGTTGAGTGCTCG 60.137 52.381 0.00 0.00 0.00 5.03
489 490 2.390938 CTAAACGTGTTGAGTGCTCGA 58.609 47.619 0.00 0.00 0.00 4.04
490 491 0.928229 AAACGTGTTGAGTGCTCGAC 59.072 50.000 11.61 11.61 42.86 4.20
495 496 2.524569 TGTTGAGTGCTCGACATTGA 57.475 45.000 16.03 0.00 46.09 2.57
496 497 2.832563 TGTTGAGTGCTCGACATTGAA 58.167 42.857 16.03 0.00 46.09 2.69
497 498 2.802247 TGTTGAGTGCTCGACATTGAAG 59.198 45.455 16.03 0.00 46.09 3.02
498 499 1.432514 TGAGTGCTCGACATTGAAGC 58.567 50.000 0.00 0.00 0.00 3.86
499 500 1.270252 TGAGTGCTCGACATTGAAGCA 60.270 47.619 8.38 8.38 0.00 3.91
500 501 1.392853 GAGTGCTCGACATTGAAGCAG 59.607 52.381 11.48 0.00 36.10 4.24
501 502 1.151668 GTGCTCGACATTGAAGCAGT 58.848 50.000 11.48 0.00 36.10 4.40
502 503 1.127582 GTGCTCGACATTGAAGCAGTC 59.872 52.381 11.48 0.00 36.10 3.51
503 504 1.001293 TGCTCGACATTGAAGCAGTCT 59.999 47.619 8.38 0.00 0.00 3.24
504 505 2.231235 TGCTCGACATTGAAGCAGTCTA 59.769 45.455 8.38 0.00 0.00 2.59
505 506 2.857152 GCTCGACATTGAAGCAGTCTAG 59.143 50.000 0.00 0.00 0.00 2.43
506 507 3.443037 CTCGACATTGAAGCAGTCTAGG 58.557 50.000 0.00 0.00 0.00 3.02
507 508 2.826128 TCGACATTGAAGCAGTCTAGGT 59.174 45.455 0.00 0.00 0.00 3.08
508 509 3.119459 TCGACATTGAAGCAGTCTAGGTC 60.119 47.826 6.60 6.60 38.76 3.85
509 510 3.182967 GACATTGAAGCAGTCTAGGTCG 58.817 50.000 0.00 0.00 34.13 4.79
510 511 2.563179 ACATTGAAGCAGTCTAGGTCGT 59.437 45.455 0.00 0.00 0.00 4.34
511 512 3.006967 ACATTGAAGCAGTCTAGGTCGTT 59.993 43.478 0.00 0.00 0.00 3.85
512 513 2.724977 TGAAGCAGTCTAGGTCGTTG 57.275 50.000 0.00 0.00 0.00 4.10
513 514 1.272490 TGAAGCAGTCTAGGTCGTTGG 59.728 52.381 0.00 0.00 0.00 3.77
514 515 1.544691 GAAGCAGTCTAGGTCGTTGGA 59.455 52.381 0.00 0.00 0.00 3.53
515 516 1.853963 AGCAGTCTAGGTCGTTGGAT 58.146 50.000 0.00 0.00 0.00 3.41
516 517 2.180276 AGCAGTCTAGGTCGTTGGATT 58.820 47.619 0.00 0.00 0.00 3.01
517 518 2.093973 AGCAGTCTAGGTCGTTGGATTG 60.094 50.000 0.00 0.00 0.00 2.67
518 519 2.094182 GCAGTCTAGGTCGTTGGATTGA 60.094 50.000 0.00 0.00 0.00 2.57
519 520 3.512680 CAGTCTAGGTCGTTGGATTGAC 58.487 50.000 0.00 0.00 0.00 3.18
520 521 3.056821 CAGTCTAGGTCGTTGGATTGACA 60.057 47.826 0.00 0.00 36.83 3.58
521 522 3.769844 AGTCTAGGTCGTTGGATTGACAT 59.230 43.478 0.00 0.00 36.83 3.06
522 523 3.865745 GTCTAGGTCGTTGGATTGACATG 59.134 47.826 0.00 0.00 36.83 3.21
523 524 3.767131 TCTAGGTCGTTGGATTGACATGA 59.233 43.478 0.00 0.00 36.83 3.07
524 525 3.634397 AGGTCGTTGGATTGACATGAT 57.366 42.857 0.00 0.00 36.83 2.45
525 526 3.955471 AGGTCGTTGGATTGACATGATT 58.045 40.909 0.00 0.00 36.83 2.57
526 527 4.335416 AGGTCGTTGGATTGACATGATTT 58.665 39.130 0.00 0.00 36.83 2.17
527 528 4.156556 AGGTCGTTGGATTGACATGATTTG 59.843 41.667 0.00 0.00 36.83 2.32
528 529 4.155826 GGTCGTTGGATTGACATGATTTGA 59.844 41.667 0.00 0.00 36.83 2.69
529 530 5.163622 GGTCGTTGGATTGACATGATTTGAT 60.164 40.000 0.00 0.00 36.83 2.57
530 531 5.740569 GTCGTTGGATTGACATGATTTGATG 59.259 40.000 0.00 0.00 35.20 3.07
531 532 5.038683 CGTTGGATTGACATGATTTGATGG 58.961 41.667 0.00 0.00 0.00 3.51
532 533 4.659111 TGGATTGACATGATTTGATGGC 57.341 40.909 0.00 0.00 0.00 4.40
533 534 3.385433 TGGATTGACATGATTTGATGGCC 59.615 43.478 0.00 0.00 29.16 5.36
534 535 3.551454 GGATTGACATGATTTGATGGCCG 60.551 47.826 0.00 0.00 29.16 6.13
535 536 2.416680 TGACATGATTTGATGGCCGA 57.583 45.000 0.00 0.00 29.16 5.54
536 537 2.291365 TGACATGATTTGATGGCCGAG 58.709 47.619 0.00 0.00 29.16 4.63
537 538 2.093021 TGACATGATTTGATGGCCGAGA 60.093 45.455 0.00 0.00 29.16 4.04
538 539 3.144506 GACATGATTTGATGGCCGAGAT 58.855 45.455 0.00 0.00 0.00 2.75
539 540 3.559069 ACATGATTTGATGGCCGAGATT 58.441 40.909 0.00 0.00 0.00 2.40
540 541 4.717877 ACATGATTTGATGGCCGAGATTA 58.282 39.130 0.00 0.00 0.00 1.75
541 542 5.132502 ACATGATTTGATGGCCGAGATTAA 58.867 37.500 0.00 0.00 0.00 1.40
542 543 5.771666 ACATGATTTGATGGCCGAGATTAAT 59.228 36.000 0.00 0.00 0.00 1.40
543 544 6.266103 ACATGATTTGATGGCCGAGATTAATT 59.734 34.615 0.00 0.00 0.00 1.40
544 545 6.075762 TGATTTGATGGCCGAGATTAATTG 57.924 37.500 0.00 0.00 0.00 2.32
545 546 5.827267 TGATTTGATGGCCGAGATTAATTGA 59.173 36.000 0.00 0.00 0.00 2.57
546 547 6.320926 TGATTTGATGGCCGAGATTAATTGAA 59.679 34.615 0.00 0.00 0.00 2.69
547 548 6.713762 TTTGATGGCCGAGATTAATTGAAT 57.286 33.333 0.00 0.00 0.00 2.57
548 549 5.947228 TGATGGCCGAGATTAATTGAATC 57.053 39.130 0.00 0.00 43.89 2.52
560 561 6.796785 ATTAATTGAATCTGTCCCTTTGGG 57.203 37.500 0.00 0.00 46.11 4.12
561 562 3.833559 ATTGAATCTGTCCCTTTGGGT 57.166 42.857 2.25 0.00 44.74 4.51
562 563 2.879103 TGAATCTGTCCCTTTGGGTC 57.121 50.000 2.25 0.00 44.74 4.46
563 564 2.348472 TGAATCTGTCCCTTTGGGTCT 58.652 47.619 2.25 0.00 44.74 3.85
564 565 2.716424 TGAATCTGTCCCTTTGGGTCTT 59.284 45.455 2.25 0.00 44.74 3.01
565 566 3.140144 TGAATCTGTCCCTTTGGGTCTTT 59.860 43.478 2.25 0.00 44.74 2.52
566 567 3.903530 ATCTGTCCCTTTGGGTCTTTT 57.096 42.857 2.25 0.00 44.74 2.27
567 568 3.680777 TCTGTCCCTTTGGGTCTTTTT 57.319 42.857 2.25 0.00 44.74 1.94
568 569 4.799715 TCTGTCCCTTTGGGTCTTTTTA 57.200 40.909 2.25 0.00 44.74 1.52
569 570 5.333566 TCTGTCCCTTTGGGTCTTTTTAT 57.666 39.130 2.25 0.00 44.74 1.40
570 571 6.457159 TCTGTCCCTTTGGGTCTTTTTATA 57.543 37.500 2.25 0.00 44.74 0.98
571 572 7.039722 TCTGTCCCTTTGGGTCTTTTTATAT 57.960 36.000 2.25 0.00 44.74 0.86
572 573 7.475299 TCTGTCCCTTTGGGTCTTTTTATATT 58.525 34.615 2.25 0.00 44.74 1.28
573 574 7.396055 TCTGTCCCTTTGGGTCTTTTTATATTG 59.604 37.037 2.25 0.00 44.74 1.90
574 575 7.242359 TGTCCCTTTGGGTCTTTTTATATTGA 58.758 34.615 2.25 0.00 44.74 2.57
575 576 7.898636 TGTCCCTTTGGGTCTTTTTATATTGAT 59.101 33.333 2.25 0.00 44.74 2.57
576 577 9.416284 GTCCCTTTGGGTCTTTTTATATTGATA 57.584 33.333 2.25 0.00 44.74 2.15
594 595 7.818493 ATTGATATAGATGATTTGACGGTCG 57.182 36.000 3.34 0.00 0.00 4.79
595 596 6.569179 TGATATAGATGATTTGACGGTCGA 57.431 37.500 3.34 0.00 0.00 4.20
596 597 6.612306 TGATATAGATGATTTGACGGTCGAG 58.388 40.000 3.34 0.00 0.00 4.04
597 598 6.430000 TGATATAGATGATTTGACGGTCGAGA 59.570 38.462 3.34 0.00 0.00 4.04
598 599 5.713792 ATAGATGATTTGACGGTCGAGAT 57.286 39.130 3.34 0.00 0.00 2.75
599 600 3.711086 AGATGATTTGACGGTCGAGATG 58.289 45.455 3.34 0.00 0.00 2.90
600 601 2.293677 TGATTTGACGGTCGAGATGG 57.706 50.000 3.34 0.00 0.00 3.51
601 602 1.548719 TGATTTGACGGTCGAGATGGT 59.451 47.619 3.34 0.00 0.00 3.55
602 603 2.028476 TGATTTGACGGTCGAGATGGTT 60.028 45.455 3.34 0.00 0.00 3.67
603 604 2.536761 TTTGACGGTCGAGATGGTTT 57.463 45.000 3.34 0.00 0.00 3.27
604 605 1.790755 TTGACGGTCGAGATGGTTTG 58.209 50.000 3.34 0.00 0.00 2.93
605 606 0.037697 TGACGGTCGAGATGGTTTGG 60.038 55.000 3.34 0.00 0.00 3.28
606 607 0.245539 GACGGTCGAGATGGTTTGGA 59.754 55.000 0.00 0.00 0.00 3.53
607 608 0.902531 ACGGTCGAGATGGTTTGGAT 59.097 50.000 0.00 0.00 0.00 3.41
608 609 1.134788 ACGGTCGAGATGGTTTGGATC 60.135 52.381 0.00 0.00 0.00 3.36
609 610 1.137086 CGGTCGAGATGGTTTGGATCT 59.863 52.381 0.00 0.00 32.63 2.75
610 611 2.555199 GGTCGAGATGGTTTGGATCTG 58.445 52.381 0.00 0.00 29.97 2.90
611 612 1.936547 GTCGAGATGGTTTGGATCTGC 59.063 52.381 0.00 0.00 29.97 4.26
612 613 1.134401 TCGAGATGGTTTGGATCTGCC 60.134 52.381 0.00 0.00 29.97 4.85
613 614 1.685148 GAGATGGTTTGGATCTGCCC 58.315 55.000 0.00 0.00 34.97 5.36
614 615 0.259938 AGATGGTTTGGATCTGCCCC 59.740 55.000 0.00 0.00 34.97 5.80
615 616 0.259938 GATGGTTTGGATCTGCCCCT 59.740 55.000 0.00 0.00 34.97 4.79
616 617 0.712380 ATGGTTTGGATCTGCCCCTT 59.288 50.000 0.00 0.00 34.97 3.95
617 618 0.486879 TGGTTTGGATCTGCCCCTTT 59.513 50.000 0.00 0.00 34.97 3.11
618 619 0.897621 GGTTTGGATCTGCCCCTTTG 59.102 55.000 0.00 0.00 34.97 2.77
619 620 1.549950 GGTTTGGATCTGCCCCTTTGA 60.550 52.381 0.00 0.00 34.97 2.69
620 621 1.821136 GTTTGGATCTGCCCCTTTGAG 59.179 52.381 0.00 0.00 34.97 3.02
621 622 1.075601 TTGGATCTGCCCCTTTGAGT 58.924 50.000 0.00 0.00 34.97 3.41
622 623 0.620556 TGGATCTGCCCCTTTGAGTC 59.379 55.000 0.00 0.00 34.97 3.36
623 624 0.915364 GGATCTGCCCCTTTGAGTCT 59.085 55.000 0.00 0.00 0.00 3.24
624 625 1.283321 GGATCTGCCCCTTTGAGTCTT 59.717 52.381 0.00 0.00 0.00 3.01
625 626 2.291217 GGATCTGCCCCTTTGAGTCTTT 60.291 50.000 0.00 0.00 0.00 2.52
626 627 3.425659 GATCTGCCCCTTTGAGTCTTTT 58.574 45.455 0.00 0.00 0.00 2.27
627 628 3.312736 TCTGCCCCTTTGAGTCTTTTT 57.687 42.857 0.00 0.00 0.00 1.94
628 629 4.447138 TCTGCCCCTTTGAGTCTTTTTA 57.553 40.909 0.00 0.00 0.00 1.52
629 630 4.998051 TCTGCCCCTTTGAGTCTTTTTAT 58.002 39.130 0.00 0.00 0.00 1.40
630 631 6.134535 TCTGCCCCTTTGAGTCTTTTTATA 57.865 37.500 0.00 0.00 0.00 0.98
631 632 6.731467 TCTGCCCCTTTGAGTCTTTTTATAT 58.269 36.000 0.00 0.00 0.00 0.86
632 633 7.182060 TCTGCCCCTTTGAGTCTTTTTATATT 58.818 34.615 0.00 0.00 0.00 1.28
633 634 7.122650 TCTGCCCCTTTGAGTCTTTTTATATTG 59.877 37.037 0.00 0.00 0.00 1.90
634 635 6.154363 TGCCCCTTTGAGTCTTTTTATATTGG 59.846 38.462 0.00 0.00 0.00 3.16
635 636 6.154534 GCCCCTTTGAGTCTTTTTATATTGGT 59.845 38.462 0.00 0.00 0.00 3.67
636 637 7.340999 GCCCCTTTGAGTCTTTTTATATTGGTA 59.659 37.037 0.00 0.00 0.00 3.25
637 638 9.421399 CCCCTTTGAGTCTTTTTATATTGGTAT 57.579 33.333 0.00 0.00 0.00 2.73
718 720 3.575965 AAAAATCACCTGTTGCCGATC 57.424 42.857 0.00 0.00 0.00 3.69
720 722 0.394352 AATCACCTGTTGCCGATCCC 60.394 55.000 0.00 0.00 0.00 3.85
744 758 4.519540 TTTTTAGCATTGCTCTCAACCC 57.480 40.909 15.81 0.00 40.44 4.11
745 759 3.439857 TTTAGCATTGCTCTCAACCCT 57.560 42.857 15.81 0.00 40.44 4.34
746 760 2.698855 TAGCATTGCTCTCAACCCTC 57.301 50.000 15.81 0.00 40.44 4.30
747 761 0.034670 AGCATTGCTCTCAACCCTCC 60.035 55.000 5.03 0.00 30.62 4.30
748 762 0.034670 GCATTGCTCTCAACCCTCCT 60.035 55.000 0.16 0.00 34.60 3.69
749 763 1.210478 GCATTGCTCTCAACCCTCCTA 59.790 52.381 0.16 0.00 34.60 2.94
773 787 1.153667 CGGGCTGTCTTGCTCTCTC 60.154 63.158 0.00 0.00 0.00 3.20
776 790 1.003003 GGGCTGTCTTGCTCTCTCTTT 59.997 52.381 0.00 0.00 0.00 2.52
819 993 3.495753 GGCCATCTTGCTTGAACAAAAAG 59.504 43.478 0.00 0.00 0.00 2.27
820 994 4.370917 GCCATCTTGCTTGAACAAAAAGA 58.629 39.130 11.82 11.82 31.68 2.52
902 1076 0.600255 CCCGATATCGAGTTGGCCAC 60.600 60.000 26.32 0.00 43.02 5.01
903 1077 0.939577 CCGATATCGAGTTGGCCACG 60.940 60.000 26.32 6.37 43.02 4.94
904 1078 0.939577 CGATATCGAGTTGGCCACGG 60.940 60.000 20.50 0.00 43.02 4.94
905 1079 0.387929 GATATCGAGTTGGCCACGGA 59.612 55.000 3.88 0.00 0.00 4.69
906 1080 0.104304 ATATCGAGTTGGCCACGGAC 59.896 55.000 3.88 0.00 0.00 4.79
946 1122 0.679960 AATAAAGCTGGCCACGGTCC 60.680 55.000 0.00 0.00 0.00 4.46
1198 1407 4.612412 GGCGTGGACGTGGGAACA 62.612 66.667 0.00 0.00 42.22 3.18
1233 1454 0.388294 AAGGCGGCTACGAGGATAAC 59.612 55.000 13.71 0.00 44.60 1.89
1257 1478 2.884894 ACGACGAGAACCAGAAGTTT 57.115 45.000 0.00 0.00 39.40 2.66
1263 1484 3.120792 CGAGAACCAGAAGTTTGACGAA 58.879 45.455 0.00 0.00 39.40 3.85
1295 1516 4.821589 CGCCGGCCTCTTCTCCAC 62.822 72.222 23.46 0.00 0.00 4.02
1473 1708 3.175152 CGATCTCAAGAGGAAACTGACG 58.825 50.000 0.00 0.00 44.43 4.35
1565 1800 3.793144 CGAGAGCTTTGTGCCGGC 61.793 66.667 22.73 22.73 44.23 6.13
1680 1932 1.870055 TTACCGACCTGACTGCCGTC 61.870 60.000 0.64 0.64 40.64 4.79
1727 1979 1.604278 GCTCAAGTTGGACAGGTTGTC 59.396 52.381 2.34 0.62 46.23 3.18
1748 2000 1.090052 GGATTCAGTTTCCGGGCTCG 61.090 60.000 0.00 0.00 0.00 5.03
2005 3131 2.250741 TTTGGATCGAGGCATGCCGA 62.251 55.000 30.50 24.33 41.95 5.54
2473 3605 2.124403 GACAGGGAGGCATGGCTG 60.124 66.667 28.55 15.50 0.00 4.85
2521 3653 1.614317 GGGTCTGTGCTTACTTGCCAT 60.614 52.381 0.00 0.00 0.00 4.40
2582 3714 1.079405 GACCGGAAGCGAACATGGA 60.079 57.895 9.46 0.00 0.00 3.41
2870 4002 2.846371 GCTTATGCTGCTATCCCCG 58.154 57.895 0.00 0.00 36.03 5.73
2903 4035 3.701205 TCTGGTTAGCTGCATTCAAGA 57.299 42.857 1.02 0.00 0.00 3.02
3023 4155 5.843019 TGTTGAGAGGGAACTAGGAAATT 57.157 39.130 0.00 0.00 44.43 1.82
3054 4190 1.821088 AGGAGGTTGTTGGAGGAAGT 58.179 50.000 0.00 0.00 0.00 3.01
3204 4340 2.099921 CTCTTTGGCTCTCGCTAGCTAA 59.900 50.000 13.93 6.22 40.68 3.09
3340 4476 1.037493 ACGGGAACAAAAAGGAAGCC 58.963 50.000 0.00 0.00 0.00 4.35
3342 4478 0.317160 GGGAACAAAAAGGAAGCCGG 59.683 55.000 0.00 0.00 0.00 6.13
3352 4488 1.187087 AGGAAGCCGGTTCTCTACTG 58.813 55.000 1.90 0.00 35.25 2.74
3366 4502 1.996786 CTACTGGCCAAGGCATTGCG 61.997 60.000 7.01 0.24 44.11 4.85
3475 4611 7.495279 GCTATAAAGAGATGTGATCATGATCCC 59.505 40.741 28.61 20.27 37.02 3.85
3652 4788 3.081804 ACAAAGGGATGTTCTAAAGCGG 58.918 45.455 0.00 0.00 0.00 5.52
3786 4922 3.578282 GGTGTGGAAGAAAATCCCAATGT 59.422 43.478 0.00 0.00 38.82 2.71
3818 4954 6.502863 ACCCTAGTCCTTAATGTTCTGGTAAA 59.497 38.462 0.00 0.00 0.00 2.01
3833 4970 4.505191 TCTGGTAAAGTTTTCGTCTGTTCG 59.495 41.667 0.00 0.00 0.00 3.95
3865 5002 6.430007 AGAAATTTGCCTCCATGTATTCTCT 58.570 36.000 0.00 0.00 0.00 3.10
4032 5181 7.961326 AACTCCTTTTGTGGCTATCATTAAT 57.039 32.000 0.00 0.00 0.00 1.40
4244 5395 7.804843 TTTAAAGATTTACCGGAGTGTGAAA 57.195 32.000 9.46 0.00 0.00 2.69
4265 5416 1.064906 CAGAGCTTGGGATGGACATGT 60.065 52.381 0.00 0.00 0.00 3.21
4331 5616 2.836154 TCCAGGTGTGGCTTGGAC 59.164 61.111 0.00 0.00 46.76 4.02
4364 5649 9.874215 GCTTCTTATAATTTACCCATAAACGAC 57.126 33.333 0.00 0.00 33.09 4.34
4376 5661 5.163693 ACCCATAAACGACGAAATTTCCATC 60.164 40.000 12.54 9.36 0.00 3.51
4382 5667 4.250464 ACGACGAAATTTCCATCTGCTTA 58.750 39.130 12.54 0.00 0.00 3.09
4469 5754 2.401583 ATATGTGCGCTGAAGACCAA 57.598 45.000 9.73 0.00 0.00 3.67
4478 5763 3.375299 GCGCTGAAGACCAAAGAATGTAT 59.625 43.478 0.00 0.00 0.00 2.29
4493 5778 9.334947 CAAAGAATGTATCAGTGGTAGAATCAT 57.665 33.333 0.00 0.00 0.00 2.45
4554 5839 6.330178 AGTCAGGGTATACTACTCTTCAGT 57.670 41.667 2.25 0.00 37.41 3.41
4571 5856 8.349983 ACTCTTCAGTGCGTTTATAAAACATTT 58.650 29.630 0.00 0.00 0.00 2.32
4669 5955 2.803956 CACCTTTTGCAGCAATCCTTTG 59.196 45.455 9.12 0.00 35.85 2.77
4677 5963 2.380064 AGCAATCCTTTGGTGTTGGA 57.620 45.000 0.00 0.00 41.81 3.53
4703 5989 4.858850 TGATAATTGGCCTGCCTATATGG 58.141 43.478 9.97 0.00 36.94 2.74
4787 6073 8.080363 AGTCCTACTTCCTTAAGGTATTCTTG 57.920 38.462 21.04 2.35 37.01 3.02
4788 6074 7.679025 AGTCCTACTTCCTTAAGGTATTCTTGT 59.321 37.037 21.04 8.10 37.01 3.16
4789 6075 8.975295 GTCCTACTTCCTTAAGGTATTCTTGTA 58.025 37.037 21.04 8.77 37.01 2.41
4790 6076 9.725206 TCCTACTTCCTTAAGGTATTCTTGTAT 57.275 33.333 21.04 0.09 37.01 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
89 90 6.203915 CCTACCTAATATAAACGTGCATTGCA 59.796 38.462 7.38 7.38 35.60 4.08
90 91 6.425721 TCCTACCTAATATAAACGTGCATTGC 59.574 38.462 0.46 0.46 0.00 3.56
91 92 7.956420 TCCTACCTAATATAAACGTGCATTG 57.044 36.000 0.00 0.00 0.00 2.82
103 104 9.032624 ACGTGCAACTAATATCCTACCTAATAT 57.967 33.333 0.00 0.00 31.75 1.28
104 105 8.413309 ACGTGCAACTAATATCCTACCTAATA 57.587 34.615 0.00 0.00 31.75 0.98
105 106 7.299246 ACGTGCAACTAATATCCTACCTAAT 57.701 36.000 0.00 0.00 31.75 1.73
106 107 6.720112 ACGTGCAACTAATATCCTACCTAA 57.280 37.500 0.00 0.00 31.75 2.69
107 108 6.720112 AACGTGCAACTAATATCCTACCTA 57.280 37.500 0.00 0.00 31.75 3.08
108 109 5.609533 AACGTGCAACTAATATCCTACCT 57.390 39.130 0.00 0.00 31.75 3.08
109 110 9.649167 AATATAACGTGCAACTAATATCCTACC 57.351 33.333 0.00 0.00 31.75 3.18
133 134 9.929180 ACGTGCAACAGATATATCTTACATAAT 57.071 29.630 12.75 0.00 35.74 1.28
134 135 9.758651 AACGTGCAACAGATATATCTTACATAA 57.241 29.630 12.75 0.00 35.74 1.90
135 136 9.191995 CAACGTGCAACAGATATATCTTACATA 57.808 33.333 12.75 0.00 35.74 2.29
136 137 7.171508 CCAACGTGCAACAGATATATCTTACAT 59.828 37.037 12.75 0.00 35.74 2.29
137 138 6.478673 CCAACGTGCAACAGATATATCTTACA 59.521 38.462 12.75 6.15 35.74 2.41
138 139 6.479001 ACCAACGTGCAACAGATATATCTTAC 59.521 38.462 12.75 6.63 35.74 2.34
139 140 6.578944 ACCAACGTGCAACAGATATATCTTA 58.421 36.000 12.75 0.00 35.74 2.10
140 141 5.428253 ACCAACGTGCAACAGATATATCTT 58.572 37.500 12.75 2.49 35.74 2.40
141 142 5.023533 ACCAACGTGCAACAGATATATCT 57.976 39.130 9.57 9.57 35.74 1.98
142 143 7.421530 AATACCAACGTGCAACAGATATATC 57.578 36.000 4.42 4.42 35.74 1.63
143 144 7.255104 CCAAATACCAACGTGCAACAGATATAT 60.255 37.037 0.00 0.00 35.74 0.86
144 145 6.037720 CCAAATACCAACGTGCAACAGATATA 59.962 38.462 0.00 0.00 35.74 0.86
145 146 5.163663 CCAAATACCAACGTGCAACAGATAT 60.164 40.000 0.00 0.00 35.74 1.63
146 147 4.155099 CCAAATACCAACGTGCAACAGATA 59.845 41.667 0.00 0.00 35.74 1.98
147 148 3.057596 CCAAATACCAACGTGCAACAGAT 60.058 43.478 0.00 0.00 35.74 2.90
148 149 2.292016 CCAAATACCAACGTGCAACAGA 59.708 45.455 0.00 0.00 35.74 3.41
149 150 2.034053 ACCAAATACCAACGTGCAACAG 59.966 45.455 0.00 0.00 35.74 3.16
150 151 2.025155 ACCAAATACCAACGTGCAACA 58.975 42.857 0.00 0.00 35.74 3.33
151 152 2.785713 ACCAAATACCAACGTGCAAC 57.214 45.000 0.00 0.00 0.00 4.17
152 153 4.135306 TCTTACCAAATACCAACGTGCAA 58.865 39.130 0.00 0.00 0.00 4.08
153 154 3.741249 TCTTACCAAATACCAACGTGCA 58.259 40.909 0.00 0.00 0.00 4.57
154 155 4.957759 ATCTTACCAAATACCAACGTGC 57.042 40.909 0.00 0.00 0.00 5.34
155 156 7.780008 TGATATCTTACCAAATACCAACGTG 57.220 36.000 3.98 0.00 0.00 4.49
156 157 8.974060 ATTGATATCTTACCAAATACCAACGT 57.026 30.769 3.98 0.00 0.00 3.99
166 167 9.997482 GCGAAAAAGTAATTGATATCTTACCAA 57.003 29.630 3.98 0.00 0.00 3.67
167 168 8.332464 CGCGAAAAAGTAATTGATATCTTACCA 58.668 33.333 0.00 0.00 0.00 3.25
168 169 7.797123 CCGCGAAAAAGTAATTGATATCTTACC 59.203 37.037 8.23 0.00 0.00 2.85
169 170 7.797123 CCCGCGAAAAAGTAATTGATATCTTAC 59.203 37.037 8.23 5.62 0.00 2.34
170 171 7.711772 TCCCGCGAAAAAGTAATTGATATCTTA 59.288 33.333 8.23 0.00 0.00 2.10
171 172 6.540914 TCCCGCGAAAAAGTAATTGATATCTT 59.459 34.615 8.23 0.00 0.00 2.40
172 173 6.053005 TCCCGCGAAAAAGTAATTGATATCT 58.947 36.000 8.23 0.00 0.00 1.98
173 174 6.295039 TCCCGCGAAAAAGTAATTGATATC 57.705 37.500 8.23 0.00 0.00 1.63
174 175 6.687081 TTCCCGCGAAAAAGTAATTGATAT 57.313 33.333 8.23 0.00 0.00 1.63
175 176 6.459024 CCATTCCCGCGAAAAAGTAATTGATA 60.459 38.462 8.23 0.00 0.00 2.15
176 177 5.339990 CATTCCCGCGAAAAAGTAATTGAT 58.660 37.500 8.23 0.00 0.00 2.57
177 178 4.380023 CCATTCCCGCGAAAAAGTAATTGA 60.380 41.667 8.23 0.00 0.00 2.57
178 179 3.857093 CCATTCCCGCGAAAAAGTAATTG 59.143 43.478 8.23 0.00 0.00 2.32
179 180 3.508402 ACCATTCCCGCGAAAAAGTAATT 59.492 39.130 8.23 0.00 0.00 1.40
180 181 3.086282 ACCATTCCCGCGAAAAAGTAAT 58.914 40.909 8.23 0.00 0.00 1.89
181 182 2.506444 ACCATTCCCGCGAAAAAGTAA 58.494 42.857 8.23 0.00 0.00 2.24
182 183 2.188062 ACCATTCCCGCGAAAAAGTA 57.812 45.000 8.23 0.00 0.00 2.24
183 184 2.081462 CTACCATTCCCGCGAAAAAGT 58.919 47.619 8.23 6.23 0.00 2.66
184 185 1.400494 CCTACCATTCCCGCGAAAAAG 59.600 52.381 8.23 0.00 0.00 2.27
185 186 1.003349 TCCTACCATTCCCGCGAAAAA 59.997 47.619 8.23 0.00 0.00 1.94
186 187 0.614294 TCCTACCATTCCCGCGAAAA 59.386 50.000 8.23 0.61 0.00 2.29
187 188 0.834612 ATCCTACCATTCCCGCGAAA 59.165 50.000 8.23 1.06 0.00 3.46
188 189 1.707106 TATCCTACCATTCCCGCGAA 58.293 50.000 8.23 0.00 0.00 4.70
189 190 1.933021 ATATCCTACCATTCCCGCGA 58.067 50.000 8.23 0.00 0.00 5.87
190 191 2.762535 AATATCCTACCATTCCCGCG 57.237 50.000 0.00 0.00 0.00 6.46
191 192 7.107542 TGTAATTAATATCCTACCATTCCCGC 58.892 38.462 0.00 0.00 0.00 6.13
192 193 9.109393 CATGTAATTAATATCCTACCATTCCCG 57.891 37.037 0.00 0.00 0.00 5.14
193 194 9.408648 CCATGTAATTAATATCCTACCATTCCC 57.591 37.037 0.00 0.00 0.00 3.97
194 195 8.903820 GCCATGTAATTAATATCCTACCATTCC 58.096 37.037 0.00 0.00 0.00 3.01
195 196 9.461312 TGCCATGTAATTAATATCCTACCATTC 57.539 33.333 0.00 0.00 0.00 2.67
196 197 9.466497 CTGCCATGTAATTAATATCCTACCATT 57.534 33.333 0.00 0.00 0.00 3.16
197 198 8.835734 TCTGCCATGTAATTAATATCCTACCAT 58.164 33.333 0.00 0.00 0.00 3.55
198 199 8.213489 TCTGCCATGTAATTAATATCCTACCA 57.787 34.615 0.00 0.00 0.00 3.25
199 200 9.686683 AATCTGCCATGTAATTAATATCCTACC 57.313 33.333 0.00 0.00 0.00 3.18
202 203 9.812347 TGAAATCTGCCATGTAATTAATATCCT 57.188 29.630 0.00 0.00 0.00 3.24
206 207 9.585369 TCCATGAAATCTGCCATGTAATTAATA 57.415 29.630 0.00 0.00 38.69 0.98
207 208 8.481492 TCCATGAAATCTGCCATGTAATTAAT 57.519 30.769 0.00 0.00 38.69 1.40
208 209 7.894753 TCCATGAAATCTGCCATGTAATTAA 57.105 32.000 0.00 0.00 38.69 1.40
209 210 9.234827 CTATCCATGAAATCTGCCATGTAATTA 57.765 33.333 0.00 0.00 38.69 1.40
210 211 6.989155 ATCCATGAAATCTGCCATGTAATT 57.011 33.333 0.00 0.00 38.69 1.40
211 212 6.152323 GCTATCCATGAAATCTGCCATGTAAT 59.848 38.462 0.00 0.00 38.69 1.89
212 213 5.474532 GCTATCCATGAAATCTGCCATGTAA 59.525 40.000 0.00 0.00 38.69 2.41
213 214 5.005740 GCTATCCATGAAATCTGCCATGTA 58.994 41.667 0.00 0.00 38.69 2.29
214 215 3.825014 GCTATCCATGAAATCTGCCATGT 59.175 43.478 0.00 0.00 38.69 3.21
215 216 3.119955 CGCTATCCATGAAATCTGCCATG 60.120 47.826 0.00 0.00 39.72 3.66
216 217 3.079578 CGCTATCCATGAAATCTGCCAT 58.920 45.455 0.00 0.00 0.00 4.40
217 218 2.158769 ACGCTATCCATGAAATCTGCCA 60.159 45.455 0.00 0.00 0.00 4.92
218 219 2.498167 ACGCTATCCATGAAATCTGCC 58.502 47.619 0.00 0.00 0.00 4.85
219 220 3.561310 TCAACGCTATCCATGAAATCTGC 59.439 43.478 0.00 0.00 0.00 4.26
220 221 4.813161 ACTCAACGCTATCCATGAAATCTG 59.187 41.667 0.00 0.00 0.00 2.90
221 222 5.028549 ACTCAACGCTATCCATGAAATCT 57.971 39.130 0.00 0.00 0.00 2.40
222 223 4.811024 TGACTCAACGCTATCCATGAAATC 59.189 41.667 0.00 0.00 0.00 2.17
223 224 4.769688 TGACTCAACGCTATCCATGAAAT 58.230 39.130 0.00 0.00 0.00 2.17
224 225 4.200838 TGACTCAACGCTATCCATGAAA 57.799 40.909 0.00 0.00 0.00 2.69
225 226 3.885724 TGACTCAACGCTATCCATGAA 57.114 42.857 0.00 0.00 0.00 2.57
226 227 3.885724 TTGACTCAACGCTATCCATGA 57.114 42.857 0.00 0.00 0.00 3.07
227 228 4.154015 TGTTTTGACTCAACGCTATCCATG 59.846 41.667 0.00 0.00 0.00 3.66
228 229 4.154195 GTGTTTTGACTCAACGCTATCCAT 59.846 41.667 0.00 0.00 32.82 3.41
229 230 3.496884 GTGTTTTGACTCAACGCTATCCA 59.503 43.478 0.00 0.00 32.82 3.41
230 231 3.423123 CGTGTTTTGACTCAACGCTATCC 60.423 47.826 0.00 0.00 33.30 2.59
231 232 3.183775 ACGTGTTTTGACTCAACGCTATC 59.816 43.478 0.00 0.00 33.30 2.08
232 233 3.128349 ACGTGTTTTGACTCAACGCTAT 58.872 40.909 0.00 0.00 33.30 2.97
233 234 2.542597 ACGTGTTTTGACTCAACGCTA 58.457 42.857 0.00 0.00 33.30 4.26
234 235 1.365699 ACGTGTTTTGACTCAACGCT 58.634 45.000 0.00 0.00 33.30 5.07
235 236 2.168201 AACGTGTTTTGACTCAACGC 57.832 45.000 0.00 0.00 0.00 4.84
236 237 3.998522 AGAAACGTGTTTTGACTCAACG 58.001 40.909 0.00 0.00 32.11 4.10
237 238 5.735892 GGTTAGAAACGTGTTTTGACTCAAC 59.264 40.000 0.00 0.00 32.11 3.18
238 239 5.411977 TGGTTAGAAACGTGTTTTGACTCAA 59.588 36.000 0.00 0.00 32.11 3.02
239 240 4.936411 TGGTTAGAAACGTGTTTTGACTCA 59.064 37.500 0.00 0.00 32.11 3.41
240 241 5.473796 TGGTTAGAAACGTGTTTTGACTC 57.526 39.130 0.00 0.00 32.11 3.36
241 242 5.883503 TTGGTTAGAAACGTGTTTTGACT 57.116 34.783 0.00 0.00 32.11 3.41
242 243 5.457473 CCATTGGTTAGAAACGTGTTTTGAC 59.543 40.000 0.00 0.09 32.11 3.18
243 244 5.583495 CCATTGGTTAGAAACGTGTTTTGA 58.417 37.500 0.00 0.00 32.11 2.69
244 245 4.208253 GCCATTGGTTAGAAACGTGTTTTG 59.792 41.667 4.26 0.00 32.11 2.44
245 246 4.142138 TGCCATTGGTTAGAAACGTGTTTT 60.142 37.500 4.26 0.00 32.11 2.43
246 247 3.381908 TGCCATTGGTTAGAAACGTGTTT 59.618 39.130 4.26 0.00 35.14 2.83
247 248 2.952978 TGCCATTGGTTAGAAACGTGTT 59.047 40.909 4.26 0.00 0.00 3.32
248 249 2.552315 CTGCCATTGGTTAGAAACGTGT 59.448 45.455 4.26 0.00 0.00 4.49
249 250 2.552315 ACTGCCATTGGTTAGAAACGTG 59.448 45.455 13.74 0.00 0.00 4.49
250 251 2.552315 CACTGCCATTGGTTAGAAACGT 59.448 45.455 13.74 0.00 0.00 3.99
251 252 2.095263 CCACTGCCATTGGTTAGAAACG 60.095 50.000 13.74 0.00 0.00 3.60
252 253 2.890945 ACCACTGCCATTGGTTAGAAAC 59.109 45.455 0.04 0.00 45.62 2.78
253 254 2.890311 CACCACTGCCATTGGTTAGAAA 59.110 45.455 3.63 0.00 45.62 2.52
254 255 2.513753 CACCACTGCCATTGGTTAGAA 58.486 47.619 3.63 0.00 45.62 2.10
255 256 1.271871 CCACCACTGCCATTGGTTAGA 60.272 52.381 3.63 0.00 45.62 2.10
256 257 1.176527 CCACCACTGCCATTGGTTAG 58.823 55.000 3.63 6.10 45.62 2.34
257 258 0.251564 CCCACCACTGCCATTGGTTA 60.252 55.000 3.63 0.00 45.62 2.85
258 259 1.533753 CCCACCACTGCCATTGGTT 60.534 57.895 3.63 0.00 45.62 3.67
260 261 0.251564 TTACCCACCACTGCCATTGG 60.252 55.000 0.00 0.00 40.32 3.16
261 262 1.851304 ATTACCCACCACTGCCATTG 58.149 50.000 0.00 0.00 0.00 2.82
262 263 2.621556 AATTACCCACCACTGCCATT 57.378 45.000 0.00 0.00 0.00 3.16
263 264 2.849943 TCTAATTACCCACCACTGCCAT 59.150 45.455 0.00 0.00 0.00 4.40
264 265 2.238646 CTCTAATTACCCACCACTGCCA 59.761 50.000 0.00 0.00 0.00 4.92
265 266 2.919228 CTCTAATTACCCACCACTGCC 58.081 52.381 0.00 0.00 0.00 4.85
266 267 2.289565 GCTCTAATTACCCACCACTGC 58.710 52.381 0.00 0.00 0.00 4.40
267 268 2.093658 ACGCTCTAATTACCCACCACTG 60.094 50.000 0.00 0.00 0.00 3.66
268 269 2.185387 ACGCTCTAATTACCCACCACT 58.815 47.619 0.00 0.00 0.00 4.00
269 270 2.685850 ACGCTCTAATTACCCACCAC 57.314 50.000 0.00 0.00 0.00 4.16
270 271 4.822685 TTAACGCTCTAATTACCCACCA 57.177 40.909 0.00 0.00 0.00 4.17
271 272 4.033243 CGTTTAACGCTCTAATTACCCACC 59.967 45.833 4.11 0.00 33.65 4.61
272 273 5.134978 CGTTTAACGCTCTAATTACCCAC 57.865 43.478 4.11 0.00 33.65 4.61
284 285 8.567796 GTTGAGTACCAAACACGTTTAACGCT 62.568 42.308 17.81 2.87 40.00 5.07
285 286 6.496883 GTTGAGTACCAAACACGTTTAACGC 61.497 44.000 17.81 0.00 40.00 4.84
286 287 4.957372 GTTGAGTACCAAACACGTTTAACG 59.043 41.667 16.31 16.31 41.26 3.18
287 288 5.867166 TGTTGAGTACCAAACACGTTTAAC 58.133 37.500 6.82 0.00 36.36 2.01
288 289 6.680874 ATGTTGAGTACCAAACACGTTTAA 57.319 33.333 11.89 0.00 36.36 1.52
289 290 6.680874 AATGTTGAGTACCAAACACGTTTA 57.319 33.333 11.89 0.00 36.36 2.01
290 291 5.570234 AATGTTGAGTACCAAACACGTTT 57.430 34.783 11.89 2.63 36.36 3.60
291 292 6.050432 TCTAATGTTGAGTACCAAACACGTT 58.950 36.000 11.89 7.42 36.36 3.99
292 293 5.603596 TCTAATGTTGAGTACCAAACACGT 58.396 37.500 11.89 7.12 36.36 4.49
293 294 5.389516 GCTCTAATGTTGAGTACCAAACACG 60.390 44.000 11.89 5.76 36.36 4.49
294 295 5.389516 CGCTCTAATGTTGAGTACCAAACAC 60.390 44.000 11.89 0.58 36.36 3.32
295 296 4.688879 CGCTCTAATGTTGAGTACCAAACA 59.311 41.667 12.00 12.00 36.36 2.83
296 297 4.927425 TCGCTCTAATGTTGAGTACCAAAC 59.073 41.667 2.11 2.11 36.36 2.93
297 298 5.142061 TCGCTCTAATGTTGAGTACCAAA 57.858 39.130 0.00 0.00 36.36 3.28
298 299 4.794278 TCGCTCTAATGTTGAGTACCAA 57.206 40.909 0.00 0.00 34.30 3.67
299 300 5.339008 AATCGCTCTAATGTTGAGTACCA 57.661 39.130 0.00 0.00 34.30 3.25
300 301 5.810587 TCAAATCGCTCTAATGTTGAGTACC 59.189 40.000 0.00 0.00 34.30 3.34
301 302 6.887376 TCAAATCGCTCTAATGTTGAGTAC 57.113 37.500 0.00 0.00 34.30 2.73
302 303 6.312918 GGTTCAAATCGCTCTAATGTTGAGTA 59.687 38.462 0.00 0.00 34.30 2.59
303 304 5.122396 GGTTCAAATCGCTCTAATGTTGAGT 59.878 40.000 0.00 0.00 34.30 3.41
304 305 5.563842 GGTTCAAATCGCTCTAATGTTGAG 58.436 41.667 0.00 0.00 34.87 3.02
305 306 4.092821 CGGTTCAAATCGCTCTAATGTTGA 59.907 41.667 0.00 0.00 0.00 3.18
306 307 4.334443 CGGTTCAAATCGCTCTAATGTTG 58.666 43.478 0.00 0.00 0.00 3.33
307 308 4.600012 CGGTTCAAATCGCTCTAATGTT 57.400 40.909 0.00 0.00 0.00 2.71
317 318 4.804139 AGTGTTATCTAGCGGTTCAAATCG 59.196 41.667 0.00 0.00 35.16 3.34
318 319 6.979238 ACTAGTGTTATCTAGCGGTTCAAATC 59.021 38.462 0.00 0.00 40.50 2.17
319 320 6.875076 ACTAGTGTTATCTAGCGGTTCAAAT 58.125 36.000 0.00 0.00 40.50 2.32
320 321 6.071784 TGACTAGTGTTATCTAGCGGTTCAAA 60.072 38.462 0.00 0.00 40.50 2.69
321 322 5.416639 TGACTAGTGTTATCTAGCGGTTCAA 59.583 40.000 0.00 0.00 40.50 2.69
322 323 4.945543 TGACTAGTGTTATCTAGCGGTTCA 59.054 41.667 0.00 0.00 40.50 3.18
323 324 5.496133 TGACTAGTGTTATCTAGCGGTTC 57.504 43.478 0.00 0.00 40.50 3.62
324 325 5.909621 TTGACTAGTGTTATCTAGCGGTT 57.090 39.130 0.00 0.00 40.50 4.44
325 326 5.360144 ACATTGACTAGTGTTATCTAGCGGT 59.640 40.000 0.00 0.00 40.50 5.68
326 327 5.687730 CACATTGACTAGTGTTATCTAGCGG 59.312 44.000 0.00 0.00 40.50 5.52
327 328 6.266323 ACACATTGACTAGTGTTATCTAGCG 58.734 40.000 0.00 0.00 46.04 4.26
328 329 7.376336 CGTACACATTGACTAGTGTTATCTAGC 59.624 40.741 0.00 0.00 46.04 3.42
329 330 8.396390 ACGTACACATTGACTAGTGTTATCTAG 58.604 37.037 0.00 0.00 46.04 2.43
330 331 8.179615 CACGTACACATTGACTAGTGTTATCTA 58.820 37.037 0.00 0.00 46.04 1.98
331 332 7.027760 CACGTACACATTGACTAGTGTTATCT 58.972 38.462 0.00 0.00 46.04 1.98
332 333 6.237490 GCACGTACACATTGACTAGTGTTATC 60.237 42.308 0.00 0.00 46.04 1.75
333 334 5.575606 GCACGTACACATTGACTAGTGTTAT 59.424 40.000 0.00 0.00 46.04 1.89
334 335 4.919168 GCACGTACACATTGACTAGTGTTA 59.081 41.667 0.00 0.00 46.04 2.41
335 336 3.739300 GCACGTACACATTGACTAGTGTT 59.261 43.478 0.00 0.00 46.04 3.32
337 338 3.313690 TGCACGTACACATTGACTAGTG 58.686 45.455 0.00 0.00 41.40 2.74
338 339 3.653539 TGCACGTACACATTGACTAGT 57.346 42.857 0.00 0.00 0.00 2.57
339 340 4.724885 GCATTGCACGTACACATTGACTAG 60.725 45.833 3.15 0.00 0.00 2.57
340 341 3.124466 GCATTGCACGTACACATTGACTA 59.876 43.478 3.15 0.00 0.00 2.59
341 342 2.095768 GCATTGCACGTACACATTGACT 60.096 45.455 3.15 0.00 0.00 3.41
342 343 2.241722 GCATTGCACGTACACATTGAC 58.758 47.619 3.15 1.49 0.00 3.18
343 344 1.876156 TGCATTGCACGTACACATTGA 59.124 42.857 7.38 0.00 31.71 2.57
344 345 2.328655 TGCATTGCACGTACACATTG 57.671 45.000 7.38 0.00 31.71 2.82
355 356 3.650070 TCCAAATTAACGTGCATTGCA 57.350 38.095 7.38 7.38 35.60 4.08
356 357 3.987220 ACTTCCAAATTAACGTGCATTGC 59.013 39.130 0.46 0.46 0.00 3.56
370 371 8.503196 CGCATGCACTTAATATATACTTCCAAA 58.497 33.333 19.57 0.00 0.00 3.28
371 372 7.119116 CCGCATGCACTTAATATATACTTCCAA 59.881 37.037 19.57 0.00 0.00 3.53
372 373 6.593770 CCGCATGCACTTAATATATACTTCCA 59.406 38.462 19.57 0.00 0.00 3.53
373 374 6.816640 TCCGCATGCACTTAATATATACTTCC 59.183 38.462 19.57 0.00 0.00 3.46
374 375 7.827819 TCCGCATGCACTTAATATATACTTC 57.172 36.000 19.57 0.00 0.00 3.01
380 381 9.884636 ACTTAATATCCGCATGCACTTAATATA 57.115 29.630 19.57 4.53 0.00 0.86
381 382 8.792830 ACTTAATATCCGCATGCACTTAATAT 57.207 30.769 19.57 9.48 0.00 1.28
382 383 9.366216 CTACTTAATATCCGCATGCACTTAATA 57.634 33.333 19.57 7.60 0.00 0.98
383 384 7.334421 CCTACTTAATATCCGCATGCACTTAAT 59.666 37.037 19.57 5.58 0.00 1.40
384 385 6.649141 CCTACTTAATATCCGCATGCACTTAA 59.351 38.462 19.57 11.55 0.00 1.85
385 386 6.014925 TCCTACTTAATATCCGCATGCACTTA 60.015 38.462 19.57 5.72 0.00 2.24
386 387 4.997395 CCTACTTAATATCCGCATGCACTT 59.003 41.667 19.57 3.39 0.00 3.16
387 388 4.283467 TCCTACTTAATATCCGCATGCACT 59.717 41.667 19.57 3.59 0.00 4.40
388 389 4.566004 TCCTACTTAATATCCGCATGCAC 58.434 43.478 19.57 0.00 0.00 4.57
389 390 4.882842 TCCTACTTAATATCCGCATGCA 57.117 40.909 19.57 0.00 0.00 3.96
390 391 8.438676 AAATATCCTACTTAATATCCGCATGC 57.561 34.615 7.91 7.91 0.00 4.06
414 415 8.023706 TGCTAATCACATAATAACACGCAAAAA 58.976 29.630 0.00 0.00 0.00 1.94
415 416 7.483375 GTGCTAATCACATAATAACACGCAAAA 59.517 33.333 0.00 0.00 44.98 2.44
416 417 6.964370 GTGCTAATCACATAATAACACGCAAA 59.036 34.615 0.00 0.00 44.98 3.68
417 418 6.482835 GTGCTAATCACATAATAACACGCAA 58.517 36.000 0.00 0.00 44.98 4.85
418 419 6.043327 GTGCTAATCACATAATAACACGCA 57.957 37.500 0.00 0.00 44.98 5.24
442 443 9.457110 CGTGCAGTTAATTTTATGCCAAATATA 57.543 29.630 0.00 0.00 37.89 0.86
443 444 7.042791 GCGTGCAGTTAATTTTATGCCAAATAT 60.043 33.333 0.00 0.00 37.89 1.28
444 445 6.254589 GCGTGCAGTTAATTTTATGCCAAATA 59.745 34.615 0.00 0.00 37.89 1.40
445 446 5.063312 GCGTGCAGTTAATTTTATGCCAAAT 59.937 36.000 0.00 0.00 37.89 2.32
446 447 4.387256 GCGTGCAGTTAATTTTATGCCAAA 59.613 37.500 0.00 0.00 37.89 3.28
447 448 3.923461 GCGTGCAGTTAATTTTATGCCAA 59.077 39.130 0.00 0.00 37.89 4.52
448 449 3.192422 AGCGTGCAGTTAATTTTATGCCA 59.808 39.130 0.00 0.00 37.89 4.92
449 450 3.769536 AGCGTGCAGTTAATTTTATGCC 58.230 40.909 0.00 0.00 37.89 4.40
450 451 6.504180 CGTTTAGCGTGCAGTTAATTTTATGC 60.504 38.462 0.00 2.49 39.14 3.14
451 452 6.897050 CGTTTAGCGTGCAGTTAATTTTATG 58.103 36.000 0.00 0.00 35.54 1.90
468 469 1.136611 CGAGCACTCAACACGTTTAGC 60.137 52.381 0.00 0.00 0.00 3.09
469 470 2.153247 GTCGAGCACTCAACACGTTTAG 59.847 50.000 0.00 0.00 0.00 1.85
470 471 2.121786 GTCGAGCACTCAACACGTTTA 58.878 47.619 0.00 0.00 0.00 2.01
471 472 0.928229 GTCGAGCACTCAACACGTTT 59.072 50.000 0.00 0.00 0.00 3.60
472 473 0.179121 TGTCGAGCACTCAACACGTT 60.179 50.000 0.00 0.00 0.00 3.99
473 474 0.032130 ATGTCGAGCACTCAACACGT 59.968 50.000 0.00 0.00 0.00 4.49
474 475 1.136529 CAATGTCGAGCACTCAACACG 60.137 52.381 0.00 0.00 0.00 4.49
475 476 2.135139 TCAATGTCGAGCACTCAACAC 58.865 47.619 0.00 0.00 0.00 3.32
476 477 2.524569 TCAATGTCGAGCACTCAACA 57.475 45.000 0.00 0.00 0.00 3.33
477 478 2.412065 GCTTCAATGTCGAGCACTCAAC 60.412 50.000 0.00 0.00 36.45 3.18
478 479 1.800586 GCTTCAATGTCGAGCACTCAA 59.199 47.619 0.00 0.00 36.45 3.02
479 480 1.270252 TGCTTCAATGTCGAGCACTCA 60.270 47.619 5.06 0.00 41.15 3.41
480 481 1.392853 CTGCTTCAATGTCGAGCACTC 59.607 52.381 5.06 0.00 41.15 3.51
481 482 1.270518 ACTGCTTCAATGTCGAGCACT 60.271 47.619 5.06 0.00 41.15 4.40
482 483 1.127582 GACTGCTTCAATGTCGAGCAC 59.872 52.381 5.06 0.00 41.15 4.40
483 484 1.001293 AGACTGCTTCAATGTCGAGCA 59.999 47.619 8.00 8.00 43.56 4.26
484 485 1.719600 AGACTGCTTCAATGTCGAGC 58.280 50.000 0.00 0.00 36.01 5.03
485 486 3.119316 ACCTAGACTGCTTCAATGTCGAG 60.119 47.826 0.00 0.00 36.01 4.04
486 487 2.826128 ACCTAGACTGCTTCAATGTCGA 59.174 45.455 0.00 0.00 36.01 4.20
487 488 3.182967 GACCTAGACTGCTTCAATGTCG 58.817 50.000 0.00 0.00 36.01 4.35
488 489 3.182967 CGACCTAGACTGCTTCAATGTC 58.817 50.000 0.00 0.00 0.00 3.06
489 490 2.563179 ACGACCTAGACTGCTTCAATGT 59.437 45.455 0.00 0.00 0.00 2.71
490 491 3.238108 ACGACCTAGACTGCTTCAATG 57.762 47.619 0.00 0.00 0.00 2.82
491 492 3.589988 CAACGACCTAGACTGCTTCAAT 58.410 45.455 0.00 0.00 0.00 2.57
492 493 2.288825 CCAACGACCTAGACTGCTTCAA 60.289 50.000 0.00 0.00 0.00 2.69
493 494 1.272490 CCAACGACCTAGACTGCTTCA 59.728 52.381 0.00 0.00 0.00 3.02
494 495 1.544691 TCCAACGACCTAGACTGCTTC 59.455 52.381 0.00 0.00 0.00 3.86
495 496 1.629043 TCCAACGACCTAGACTGCTT 58.371 50.000 0.00 0.00 0.00 3.91
496 497 1.853963 ATCCAACGACCTAGACTGCT 58.146 50.000 0.00 0.00 0.00 4.24
497 498 2.094182 TCAATCCAACGACCTAGACTGC 60.094 50.000 0.00 0.00 0.00 4.40
498 499 3.056821 TGTCAATCCAACGACCTAGACTG 60.057 47.826 0.00 0.00 0.00 3.51
499 500 3.162666 TGTCAATCCAACGACCTAGACT 58.837 45.455 0.00 0.00 0.00 3.24
500 501 3.587797 TGTCAATCCAACGACCTAGAC 57.412 47.619 0.00 0.00 0.00 2.59
501 502 3.767131 TCATGTCAATCCAACGACCTAGA 59.233 43.478 0.00 0.00 0.00 2.43
502 503 4.123497 TCATGTCAATCCAACGACCTAG 57.877 45.455 0.00 0.00 0.00 3.02
503 504 4.753516 ATCATGTCAATCCAACGACCTA 57.246 40.909 0.00 0.00 0.00 3.08
504 505 3.634397 ATCATGTCAATCCAACGACCT 57.366 42.857 0.00 0.00 0.00 3.85
505 506 4.155826 TCAAATCATGTCAATCCAACGACC 59.844 41.667 0.00 0.00 0.00 4.79
506 507 5.295431 TCAAATCATGTCAATCCAACGAC 57.705 39.130 0.00 0.00 0.00 4.34
507 508 5.163632 CCATCAAATCATGTCAATCCAACGA 60.164 40.000 0.00 0.00 0.00 3.85
508 509 5.038683 CCATCAAATCATGTCAATCCAACG 58.961 41.667 0.00 0.00 0.00 4.10
509 510 4.807304 GCCATCAAATCATGTCAATCCAAC 59.193 41.667 0.00 0.00 0.00 3.77
510 511 4.141892 GGCCATCAAATCATGTCAATCCAA 60.142 41.667 0.00 0.00 0.00 3.53
511 512 3.385433 GGCCATCAAATCATGTCAATCCA 59.615 43.478 0.00 0.00 0.00 3.41
512 513 3.551454 CGGCCATCAAATCATGTCAATCC 60.551 47.826 2.24 0.00 0.00 3.01
513 514 3.316029 TCGGCCATCAAATCATGTCAATC 59.684 43.478 2.24 0.00 0.00 2.67
514 515 3.289836 TCGGCCATCAAATCATGTCAAT 58.710 40.909 2.24 0.00 0.00 2.57
515 516 2.684374 CTCGGCCATCAAATCATGTCAA 59.316 45.455 2.24 0.00 0.00 3.18
516 517 2.093021 TCTCGGCCATCAAATCATGTCA 60.093 45.455 2.24 0.00 0.00 3.58
517 518 2.564771 TCTCGGCCATCAAATCATGTC 58.435 47.619 2.24 0.00 0.00 3.06
518 519 2.715749 TCTCGGCCATCAAATCATGT 57.284 45.000 2.24 0.00 0.00 3.21
519 520 5.694231 TTAATCTCGGCCATCAAATCATG 57.306 39.130 2.24 0.00 0.00 3.07
520 521 6.491062 TCAATTAATCTCGGCCATCAAATCAT 59.509 34.615 2.24 0.00 0.00 2.45
521 522 5.827267 TCAATTAATCTCGGCCATCAAATCA 59.173 36.000 2.24 0.00 0.00 2.57
522 523 6.317789 TCAATTAATCTCGGCCATCAAATC 57.682 37.500 2.24 0.00 0.00 2.17
523 524 6.713762 TTCAATTAATCTCGGCCATCAAAT 57.286 33.333 2.24 0.00 0.00 2.32
524 525 6.713762 ATTCAATTAATCTCGGCCATCAAA 57.286 33.333 2.24 0.00 0.00 2.69
525 526 6.317789 GATTCAATTAATCTCGGCCATCAA 57.682 37.500 2.24 0.00 40.82 2.57
526 527 5.947228 GATTCAATTAATCTCGGCCATCA 57.053 39.130 2.24 0.00 40.82 3.07
533 534 7.467811 CCAAAGGGACAGATTCAATTAATCTCG 60.468 40.741 0.00 0.00 44.10 4.04
534 535 7.710896 CCAAAGGGACAGATTCAATTAATCTC 58.289 38.462 0.00 0.00 44.10 2.75
535 536 7.651027 CCAAAGGGACAGATTCAATTAATCT 57.349 36.000 0.00 0.00 45.60 2.40
568 569 9.521503 CGACCGTCAAATCATCTATATCAATAT 57.478 33.333 0.00 0.00 0.00 1.28
569 570 8.736244 TCGACCGTCAAATCATCTATATCAATA 58.264 33.333 0.00 0.00 0.00 1.90
570 571 7.602753 TCGACCGTCAAATCATCTATATCAAT 58.397 34.615 0.00 0.00 0.00 2.57
571 572 6.977213 TCGACCGTCAAATCATCTATATCAA 58.023 36.000 0.00 0.00 0.00 2.57
572 573 6.430000 TCTCGACCGTCAAATCATCTATATCA 59.570 38.462 0.00 0.00 0.00 2.15
573 574 6.843208 TCTCGACCGTCAAATCATCTATATC 58.157 40.000 0.00 0.00 0.00 1.63
574 575 6.819397 TCTCGACCGTCAAATCATCTATAT 57.181 37.500 0.00 0.00 0.00 0.86
575 576 6.349363 CCATCTCGACCGTCAAATCATCTATA 60.349 42.308 0.00 0.00 0.00 1.31
576 577 5.465051 CATCTCGACCGTCAAATCATCTAT 58.535 41.667 0.00 0.00 0.00 1.98
577 578 4.261614 CCATCTCGACCGTCAAATCATCTA 60.262 45.833 0.00 0.00 0.00 1.98
578 579 3.491619 CCATCTCGACCGTCAAATCATCT 60.492 47.826 0.00 0.00 0.00 2.90
579 580 2.797156 CCATCTCGACCGTCAAATCATC 59.203 50.000 0.00 0.00 0.00 2.92
580 581 2.168521 ACCATCTCGACCGTCAAATCAT 59.831 45.455 0.00 0.00 0.00 2.45
581 582 1.548719 ACCATCTCGACCGTCAAATCA 59.451 47.619 0.00 0.00 0.00 2.57
582 583 2.295253 ACCATCTCGACCGTCAAATC 57.705 50.000 0.00 0.00 0.00 2.17
583 584 2.742053 CAAACCATCTCGACCGTCAAAT 59.258 45.455 0.00 0.00 0.00 2.32
584 585 2.139917 CAAACCATCTCGACCGTCAAA 58.860 47.619 0.00 0.00 0.00 2.69
585 586 1.606994 CCAAACCATCTCGACCGTCAA 60.607 52.381 0.00 0.00 0.00 3.18
586 587 0.037697 CCAAACCATCTCGACCGTCA 60.038 55.000 0.00 0.00 0.00 4.35
587 588 0.245539 TCCAAACCATCTCGACCGTC 59.754 55.000 0.00 0.00 0.00 4.79
588 589 0.902531 ATCCAAACCATCTCGACCGT 59.097 50.000 0.00 0.00 0.00 4.83
589 590 1.137086 AGATCCAAACCATCTCGACCG 59.863 52.381 0.00 0.00 0.00 4.79
590 591 2.555199 CAGATCCAAACCATCTCGACC 58.445 52.381 0.00 0.00 0.00 4.79
591 592 1.936547 GCAGATCCAAACCATCTCGAC 59.063 52.381 0.00 0.00 0.00 4.20
592 593 1.134401 GGCAGATCCAAACCATCTCGA 60.134 52.381 0.00 0.00 34.01 4.04
593 594 1.303309 GGCAGATCCAAACCATCTCG 58.697 55.000 0.00 0.00 34.01 4.04
594 595 1.685148 GGGCAGATCCAAACCATCTC 58.315 55.000 0.00 0.00 36.21 2.75
595 596 0.259938 GGGGCAGATCCAAACCATCT 59.740 55.000 0.00 0.00 36.21 2.90
596 597 0.259938 AGGGGCAGATCCAAACCATC 59.740 55.000 0.00 0.00 36.21 3.51
597 598 0.712380 AAGGGGCAGATCCAAACCAT 59.288 50.000 0.00 0.00 36.21 3.55
598 599 0.486879 AAAGGGGCAGATCCAAACCA 59.513 50.000 0.00 0.00 36.21 3.67
599 600 0.897621 CAAAGGGGCAGATCCAAACC 59.102 55.000 0.00 0.00 36.21 3.27
600 601 1.821136 CTCAAAGGGGCAGATCCAAAC 59.179 52.381 0.00 0.00 36.21 2.93
601 602 1.428912 ACTCAAAGGGGCAGATCCAAA 59.571 47.619 0.00 0.00 36.21 3.28
602 603 1.004745 GACTCAAAGGGGCAGATCCAA 59.995 52.381 0.00 0.00 36.21 3.53
603 604 0.620556 GACTCAAAGGGGCAGATCCA 59.379 55.000 0.00 0.00 36.21 3.41
604 605 0.915364 AGACTCAAAGGGGCAGATCC 59.085 55.000 0.00 0.00 0.00 3.36
605 606 2.797177 AAGACTCAAAGGGGCAGATC 57.203 50.000 0.00 0.00 0.00 2.75
606 607 3.532641 AAAAGACTCAAAGGGGCAGAT 57.467 42.857 0.00 0.00 0.00 2.90
607 608 3.312736 AAAAAGACTCAAAGGGGCAGA 57.687 42.857 0.00 0.00 0.00 4.26
608 609 7.260603 CAATATAAAAAGACTCAAAGGGGCAG 58.739 38.462 0.00 0.00 0.00 4.85
609 610 6.154363 CCAATATAAAAAGACTCAAAGGGGCA 59.846 38.462 0.00 0.00 0.00 5.36
610 611 6.154534 ACCAATATAAAAAGACTCAAAGGGGC 59.845 38.462 0.00 0.00 0.00 5.80
611 612 7.718334 ACCAATATAAAAAGACTCAAAGGGG 57.282 36.000 0.00 0.00 0.00 4.79
732 746 1.573108 CCTAGGAGGGTTGAGAGCAA 58.427 55.000 1.05 0.00 0.00 3.91
733 747 0.978146 GCCTAGGAGGGTTGAGAGCA 60.978 60.000 14.75 0.00 35.37 4.26
734 748 0.978146 TGCCTAGGAGGGTTGAGAGC 60.978 60.000 14.75 0.00 35.37 4.09
735 749 1.118838 CTGCCTAGGAGGGTTGAGAG 58.881 60.000 14.75 0.00 35.37 3.20
736 750 0.978146 GCTGCCTAGGAGGGTTGAGA 60.978 60.000 14.75 0.00 35.37 3.27
737 751 1.524482 GCTGCCTAGGAGGGTTGAG 59.476 63.158 14.75 0.00 35.37 3.02
738 752 2.359169 CGCTGCCTAGGAGGGTTGA 61.359 63.158 14.75 0.00 35.37 3.18
739 753 2.187946 CGCTGCCTAGGAGGGTTG 59.812 66.667 14.75 0.00 35.37 3.77
740 754 3.083997 CCGCTGCCTAGGAGGGTT 61.084 66.667 14.75 0.00 35.37 4.11
744 758 4.232878 CAGCCCGCTGCCTAGGAG 62.233 72.222 14.75 8.40 42.71 3.69
776 790 3.494398 CCCACTTCTCCTCTCACGAAAAA 60.494 47.826 0.00 0.00 0.00 1.94
782 796 1.194781 TGGCCCACTTCTCCTCTCAC 61.195 60.000 0.00 0.00 0.00 3.51
789 963 0.034670 AGCAAGATGGCCCACTTCTC 60.035 55.000 0.00 0.44 32.86 2.87
790 964 0.407139 AAGCAAGATGGCCCACTTCT 59.593 50.000 0.00 3.17 35.29 2.85
837 1011 3.308530 GTTGTTGTAATTGTGCTCCTGC 58.691 45.455 0.00 0.00 40.20 4.85
845 1019 4.098807 GTGGACTTGGGTTGTTGTAATTGT 59.901 41.667 0.00 0.00 0.00 2.71
929 1105 2.058125 TTGGACCGTGGCCAGCTTTA 62.058 55.000 5.11 0.00 36.64 1.85
930 1106 2.920076 TTTGGACCGTGGCCAGCTTT 62.920 55.000 5.11 0.00 36.64 3.51
931 1107 3.429372 TTTGGACCGTGGCCAGCTT 62.429 57.895 5.11 0.00 36.64 3.74
932 1108 3.884774 TTTGGACCGTGGCCAGCT 61.885 61.111 5.11 0.00 36.64 4.24
933 1109 3.670377 GTTTGGACCGTGGCCAGC 61.670 66.667 5.11 0.00 36.64 4.85
934 1110 2.983592 GGTTTGGACCGTGGCCAG 60.984 66.667 5.11 0.00 36.64 4.85
946 1122 2.561037 GGTGGAGCGGTTGGGTTTG 61.561 63.158 0.00 0.00 0.00 2.93
979 1155 2.446802 GCCGGGGAGAGGAGGATT 60.447 66.667 2.18 0.00 0.00 3.01
980 1156 4.924187 CGCCGGGGAGAGGAGGAT 62.924 72.222 14.46 0.00 0.00 3.24
1062 1238 0.980423 GCTTGGAGTTGAGGAGGTCT 59.020 55.000 0.00 0.00 0.00 3.85
1197 1406 1.664321 CTTCGTCCTCGTAGGGGGTG 61.664 65.000 0.27 0.00 35.59 4.61
1198 1407 1.379576 CTTCGTCCTCGTAGGGGGT 60.380 63.158 0.27 0.00 35.59 4.95
1204 1413 2.874648 TAGCCGCCTTCGTCCTCGTA 62.875 60.000 0.00 0.00 38.33 3.43
1222 1443 2.731451 CGTCGTATCCGTTATCCTCGTA 59.269 50.000 0.00 0.00 35.01 3.43
1233 1454 1.012086 TCTGGTTCTCGTCGTATCCG 58.988 55.000 0.00 0.00 0.00 4.18
1257 1478 1.011968 CGTTGCCCTCGAATTCGTCA 61.012 55.000 25.93 16.50 40.80 4.35
1263 1484 2.813908 GCGTCGTTGCCCTCGAAT 60.814 61.111 0.00 0.00 39.01 3.34
1412 1647 2.029369 GGTTGGACGCACGGTACA 59.971 61.111 0.00 0.00 37.84 2.90
1473 1708 1.808945 CACTCCTGCACTGAAACATCC 59.191 52.381 0.00 0.00 0.00 3.51
1565 1800 4.778415 CGACCAGAGTGTCCGGCG 62.778 72.222 0.00 0.00 31.35 6.46
1579 1814 4.821589 CTGCCGGGCCTTCTCGAC 62.822 72.222 17.97 0.00 0.00 4.20
1693 1945 2.829458 GAGCGAGAGGGCCGTACT 60.829 66.667 0.00 0.00 0.00 2.73
1698 1950 1.743252 CAACTTGAGCGAGAGGGCC 60.743 63.158 0.00 0.00 0.00 5.80
1700 1952 0.390472 GTCCAACTTGAGCGAGAGGG 60.390 60.000 0.00 0.00 0.00 4.30
1701 1953 0.318441 TGTCCAACTTGAGCGAGAGG 59.682 55.000 0.00 0.00 0.00 3.69
1704 1956 0.034059 ACCTGTCCAACTTGAGCGAG 59.966 55.000 0.00 0.00 0.00 5.03
1748 2000 1.611491 TCCTTTTGGATCAACAACGGC 59.389 47.619 0.00 0.00 45.19 5.68
1858 2984 0.890683 GATGCTTTGGGTTGGTCTGG 59.109 55.000 0.00 0.00 0.00 3.86
2005 3131 1.056700 ACTCATCCGGGCTAGCCAAT 61.057 55.000 34.09 20.81 37.98 3.16
2017 3143 0.615331 TGACTGCCTTGGACTCATCC 59.385 55.000 0.00 0.00 46.48 3.51
2281 3407 3.969312 TCCTTGCCTGATCATATGTCTCA 59.031 43.478 1.90 6.59 0.00 3.27
2521 3653 7.230510 ACTCCAATAGTGTTTTTGACAATAGCA 59.769 33.333 0.00 0.00 41.56 3.49
3023 4155 4.453480 ACAACCTCCTTTCCTCATTCAA 57.547 40.909 0.00 0.00 0.00 2.69
3054 4190 2.829023 ACGAGGGGAATAACTTCAGGA 58.171 47.619 0.00 0.00 32.70 3.86
3204 4340 5.914452 AGCCATTTATCCTCTCCTCTAGAT 58.086 41.667 0.00 0.00 32.41 1.98
3340 4476 0.108138 CCTTGGCCAGTAGAGAACCG 60.108 60.000 5.11 0.00 0.00 4.44
3342 4478 0.324943 TGCCTTGGCCAGTAGAGAAC 59.675 55.000 5.11 0.00 0.00 3.01
3352 4488 2.751436 TCTCGCAATGCCTTGGCC 60.751 61.111 9.35 0.00 32.72 5.36
3430 4566 8.743085 TTATAGCATCTGAGCTCTTTGATTTT 57.257 30.769 16.19 8.59 45.26 1.82
3475 4611 1.215244 CTACAGCTGCGATGACATGG 58.785 55.000 15.27 0.00 0.00 3.66
3652 4788 0.032403 TTGGTTCAGCTGCAATGCAC 59.968 50.000 9.47 1.45 33.79 4.57
3786 4922 7.456902 AGAACATTAAGGACTAGGGTTCTGTAA 59.543 37.037 0.00 0.00 41.16 2.41
3833 4970 6.096001 ACATGGAGGCAAATTTCTATCTGTTC 59.904 38.462 0.00 0.00 0.00 3.18
3969 5111 7.216494 AGTTGCAACACAAGCCTTATAAAATT 58.784 30.769 30.11 0.88 39.50 1.82
4032 5181 6.070424 TGCATATTCAGGCATGATAGAGATCA 60.070 38.462 0.03 0.00 46.13 2.92
4244 5395 1.064906 CATGTCCATCCCAAGCTCTGT 60.065 52.381 0.00 0.00 0.00 3.41
4247 5398 2.134789 AACATGTCCATCCCAAGCTC 57.865 50.000 0.00 0.00 0.00 4.09
4265 5416 8.452534 CCAGTTTGTTGTAACTTTGTGTACTAA 58.547 33.333 0.00 0.00 36.24 2.24
4364 5649 7.251704 ACATAGTAAGCAGATGGAAATTTCG 57.748 36.000 11.95 0.00 0.00 3.46
4371 5656 5.539955 TCAGCATACATAGTAAGCAGATGGA 59.460 40.000 7.08 0.00 0.00 3.41
4376 5661 7.902387 AATGATCAGCATACATAGTAAGCAG 57.098 36.000 0.09 0.00 35.78 4.24
4443 5728 5.007626 GGTCTTCAGCGCACATATATGAAAA 59.992 40.000 19.63 0.00 30.10 2.29
4444 5729 4.511454 GGTCTTCAGCGCACATATATGAAA 59.489 41.667 19.63 0.00 30.10 2.69
4469 5754 9.911788 AAATGATTCTACCACTGATACATTCTT 57.088 29.630 0.00 0.00 0.00 2.52
4478 5763 4.943705 GCTGGAAAATGATTCTACCACTGA 59.056 41.667 0.00 0.00 0.00 3.41
4493 5778 1.475403 TGTTTCGTTGGGCTGGAAAA 58.525 45.000 0.00 0.00 32.08 2.29
4664 5950 1.619654 TCAGCATCCAACACCAAAGG 58.380 50.000 0.00 0.00 0.00 3.11
4665 5951 5.587388 ATTATCAGCATCCAACACCAAAG 57.413 39.130 0.00 0.00 0.00 2.77
4666 5952 5.337410 CCAATTATCAGCATCCAACACCAAA 60.337 40.000 0.00 0.00 0.00 3.28
4669 5955 3.491447 GCCAATTATCAGCATCCAACACC 60.491 47.826 0.00 0.00 0.00 4.16
4677 5963 1.133262 AGGCAGGCCAATTATCAGCAT 60.133 47.619 13.63 0.00 38.92 3.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.