AutoCloner

Multiple sequence alignment - TraesCS4D01G325900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS4D01G325900	chr4D	100.000	3176	0	0	1	3176	485779404	485776229	0.000000e+00	5866.0
1	TraesCS4D01G325900	chr4D	95.946	148	6	0	3029	3176	213664713	213664860	1.140000e-59	241.0
2	TraesCS4D01G325900	chr4D	96.970	132	3	1	1271	1401	485778002	485777871	1.480000e-53	220.0
3	TraesCS4D01G325900	chr4D	96.970	132	3	1	1403	1534	485778134	485778004	1.480000e-53	220.0
4	TraesCS4D01G325900	chr4D	97.436	39	1	0	293	331	485779077	485779039	2.040000e-07	67.6
5	TraesCS4D01G325900	chr4D	97.436	39	1	0	328	366	485779112	485779074	2.040000e-07	67.6
6	TraesCS4D01G325900	chr4B	96.994	2728	52	12	457	3156	619976258	619973533	0.000000e+00	4556.0
7	TraesCS4D01G325900	chr4B	97.727	132	2	1	1403	1534	619975445	619975315	3.190000e-55	226.0
8	TraesCS4D01G325900	chr4B	96.970	132	3	1	1271	1401	619975313	619975182	1.480000e-53	220.0
9	TraesCS4D01G325900	chr7A	94.428	1651	50	13	1403	3032	691433803	691435432	0.000000e+00	2501.0
10	TraesCS4D01G325900	chr7A	98.438	640	8	1	566	1203	691433029	691433668	0.000000e+00	1125.0
11	TraesCS4D01G325900	chr7A	98.077	520	9	1	1	520	691432511	691433029	0.000000e+00	904.0
12	TraesCS4D01G325900	chr7A	95.960	198	6	1	1204	1401	691433736	691433931	1.420000e-83	320.0
13	TraesCS4D01G325900	chr7A	92.308	130	9	1	1	129	84316544	84316415	1.950000e-42	183.0
14	TraesCS4D01G325900	chr7A	91.892	111	5	2	221	331	691436020	691436126	5.490000e-33	152.0
15	TraesCS4D01G325900	chr7A	97.436	39	1	0	328	366	691432803	691432841	2.040000e-07	67.6
16	TraesCS4D01G325900	chr7D	94.777	1589	43	13	1403	2980	599180556	599182115	0.000000e+00	2438.0
17	TraesCS4D01G325900	chr7D	96.933	913	25	2	293	1203	599179497	599180408	0.000000e+00	1528.0
18	TraesCS4D01G325900	chr7D	96.995	366	10	1	1	366	599179171	599179535	5.820000e-172	614.0
19	TraesCS4D01G325900	chr7D	95.455	198	3	1	1204	1401	599180489	599180680	8.550000e-81	311.0
20	TraesCS4D01G325900	chr7D	92.617	149	11	0	3028	3176	525720963	525721111	6.900000e-52	215.0
21	TraesCS4D01G325900	chr7D	92.623	122	8	1	9	129	82618834	82618713	1.170000e-39	174.0
22	TraesCS4D01G325900	chr7D	90.076	131	11	2	1	129	579908922	579908792	5.450000e-38	169.0
23	TraesCS4D01G325900	chr5D	96.280	914	29	4	293	1203	445812625	445811714	0.000000e+00	1495.0
24	TraesCS4D01G325900	chr5D	94.963	814	16	7	1403	2216	445811566	445810778	0.000000e+00	1253.0
25	TraesCS4D01G325900	chr5D	96.950	623	17	2	2217	2837	445810643	445810021	0.000000e+00	1044.0
26	TraesCS4D01G325900	chr5D	97.268	366	9	1	1	366	445812951	445812587	1.250000e-173	619.0
27	TraesCS4D01G325900	chr5D	98.485	198	3	0	1204	1401	445811633	445811436	1.810000e-92	350.0
28	TraesCS4D01G325900	chr5D	94.079	152	9	0	3025	3176	109940298	109940449	6.850000e-57	231.0
29	TraesCS4D01G325900	chr5D	94.406	143	8	0	3034	3176	15217013	15217155	1.480000e-53	220.0
30	TraesCS4D01G325900	chr5D	96.226	106	4	0	2875	2980	445810021	445809916	1.170000e-39	174.0
31	TraesCS4D01G325900	chr5D	97.436	39	1	0	293	331	445812590	445812552	2.040000e-07	67.6
32	TraesCS4D01G325900	chr7B	89.268	205	15	4	128	331	678634626	678634824	1.890000e-62	250.0
33	TraesCS4D01G325900	chr7B	92.617	149	11	0	3028	3176	595442059	595441911	6.900000e-52	215.0
34	TraesCS4D01G325900	chr7B	90.076	131	11	1	1	129	31564713	31564583	5.450000e-38	169.0
35	TraesCS4D01G325900	chr4A	94.595	148	8	0	3029	3176	30396703	30396556	2.460000e-56	230.0
36	TraesCS4D01G325900	chr1D	93.243	148	10	0	3029	3176	180851574	180851721	5.330000e-53	219.0
37	TraesCS4D01G325900	chr5A	92.667	150	11	0	3027	3176	458199044	458198895	1.920000e-52	217.0
38	TraesCS4D01G325900	chr2D	92.188	128	8	2	3	129	598934194	598934068	2.520000e-41	180.0
39	TraesCS4D01G325900	chr6D	91.538	130	10	1	1	129	17884830	17884959	9.050000e-41	178.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS4D01G325900	chr4D	485776229	485779404	3175	True	1288.240000	5866	97.762400	1	3176	5	chr4D.!!$R1	3175
1	TraesCS4D01G325900	chr4B	619973533	619976258	2725	True	1667.333333	4556	97.230333	457	3156	3	chr4B.!!$R1	2699
2	TraesCS4D01G325900	chr7A	691432511	691436126	3615	False	844.933333	2501	96.038500	1	3032	6	chr7A.!!$F1	3031
3	TraesCS4D01G325900	chr7D	599179171	599182115	2944	False	1222.750000	2438	96.040000	1	2980	4	chr7D.!!$F2	2979
4	TraesCS4D01G325900	chr5D	445809916	445812951	3035	True	714.657143	1495	96.801143	1	2980	7	chr5D.!!$R1	2979

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
919	1005	0.320421	TAAGCAGAACCACCGTGCTC	60.320	55.0	0.0	0.0	46.86	4.26	F
1764	1931	0.961019	TGAGGTTTGCAGTTCATGGC	59.039	50.0	0.0	0.0	0.00	4.40	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1869	2059	0.612732	AGCAGCAGCAGCCCATTTTA	60.613	50.000	6.1	0.0	45.49	1.52	R
2866	3207	2.805546	GCGGTCTGGTCTGCGATA	59.194	61.111	0.0	0.0	0.00	2.92	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
102	103	8.160765	TCCGGCTAATTTGATGATTAATTCCTA	58.839	33.333	0.00	0.00	0.00	2.94
378	414	3.944087	AGCAGGGATGTTCAGTAGAAAC	58.056	45.455	0.00	0.00	35.08	2.78
453	489	2.960129	GGGCGGTTCGTCATAGCG	60.960	66.667	0.00	0.00	39.33	4.26
519	555	2.256306	GGAAAAGGGGGAAATGCAGAA	58.744	47.619	0.00	0.00	0.00	3.02
520	556	2.637382	GGAAAAGGGGGAAATGCAGAAA	59.363	45.455	0.00	0.00	0.00	2.52
521	557	3.264193	GGAAAAGGGGGAAATGCAGAAAT	59.736	43.478	0.00	0.00	0.00	2.17
522	558	4.469586	GGAAAAGGGGGAAATGCAGAAATA	59.530	41.667	0.00	0.00	0.00	1.40
523	559	5.419542	GAAAAGGGGGAAATGCAGAAATAC	58.580	41.667	0.00	0.00	0.00	1.89
524	560	2.654863	AGGGGGAAATGCAGAAATACG	58.345	47.619	0.00	0.00	0.00	3.06
525	561	1.681264	GGGGGAAATGCAGAAATACGG	59.319	52.381	0.00	0.00	0.00	4.02
526	562	1.067060	GGGGAAATGCAGAAATACGGC	59.933	52.381	0.00	0.00	39.97	5.68
527	563	1.067060	GGGAAATGCAGAAATACGGCC	59.933	52.381	0.00	0.00	38.85	6.13
528	564	1.268539	GGAAATGCAGAAATACGGCCG	60.269	52.381	26.86	26.86	38.85	6.13
529	565	1.668751	GAAATGCAGAAATACGGCCGA	59.331	47.619	35.90	16.57	38.85	5.54
530	566	1.014352	AATGCAGAAATACGGCCGAC	58.986	50.000	35.90	16.59	38.85	4.79
540	576	2.279252	CGGCCGACGGGTATCTTG	60.279	66.667	24.07	0.00	39.42	3.02
541	577	2.897972	GGCCGACGGGTATCTTGT	59.102	61.111	17.22	0.00	34.97	3.16
542	578	1.727511	CGGCCGACGGGTATCTTGTA	61.728	60.000	24.07	0.00	39.42	2.41
543	579	0.677842	GGCCGACGGGTATCTTGTAT	59.322	55.000	17.22	0.00	34.97	2.29
544	580	1.604693	GGCCGACGGGTATCTTGTATG	60.605	57.143	17.22	0.00	34.97	2.39
545	581	1.604693	GCCGACGGGTATCTTGTATGG	60.605	57.143	17.22	0.00	34.97	2.74
546	582	1.684983	CCGACGGGTATCTTGTATGGT	59.315	52.381	5.81	0.00	0.00	3.55
547	583	2.545113	CCGACGGGTATCTTGTATGGTG	60.545	54.545	5.81	0.00	0.00	4.17
548	584	2.545113	CGACGGGTATCTTGTATGGTGG	60.545	54.545	0.00	0.00	0.00	4.61
549	585	1.766496	ACGGGTATCTTGTATGGTGGG	59.234	52.381	0.00	0.00	0.00	4.61
550	586	1.542547	CGGGTATCTTGTATGGTGGGC	60.543	57.143	0.00	0.00	0.00	5.36
551	587	1.202891	GGGTATCTTGTATGGTGGGCC	60.203	57.143	0.00	0.00	0.00	5.80
560	596	2.123511	TGGTGGGCCAGGTTTGTG	60.124	61.111	6.40	0.00	40.46	3.33
561	597	2.917227	GGTGGGCCAGGTTTGTGG	60.917	66.667	6.40	0.00	41.01	4.17
562	598	2.123468	GTGGGCCAGGTTTGTGGT	60.123	61.111	6.40	0.00	40.09	4.16
563	599	2.123511	TGGGCCAGGTTTGTGGTG	60.124	61.111	0.00	0.00	40.09	4.17
564	600	2.917227	GGGCCAGGTTTGTGGTGG	60.917	66.667	4.39	0.00	40.09	4.61
598	680	4.022329	CCTTTAACGATTCAAAACAGGGCT	60.022	41.667	0.00	0.00	0.00	5.19
919	1005	0.320421	TAAGCAGAACCACCGTGCTC	60.320	55.000	0.00	0.00	46.86	4.26
1129	1215	2.499303	ATCGACCCAAAAGCCCCAGG	62.499	60.000	0.00	0.00	0.00	4.45
1440	1607	4.960938	GTCATTAGACAGTGGATGGCATA	58.039	43.478	0.00	0.00	40.68	3.14
1764	1931	0.961019	TGAGGTTTGCAGTTCATGGC	59.039	50.000	0.00	0.00	0.00	4.40
1845	2035	2.488153	GCTTAGTTCATGAAGCGGGTTT	59.512	45.455	8.80	0.00	38.79	3.27
1846	2036	3.057526	GCTTAGTTCATGAAGCGGGTTTT	60.058	43.478	8.80	0.00	38.79	2.43
1847	2037	4.475944	CTTAGTTCATGAAGCGGGTTTTG	58.524	43.478	8.80	0.00	0.00	2.44
1848	2038	2.306847	AGTTCATGAAGCGGGTTTTGT	58.693	42.857	8.80	0.00	0.00	2.83
1849	2039	2.034558	AGTTCATGAAGCGGGTTTTGTG	59.965	45.455	8.80	0.00	0.00	3.33
1850	2040	1.686355	TCATGAAGCGGGTTTTGTGT	58.314	45.000	0.00	0.00	0.00	3.72
1851	2041	1.336440	TCATGAAGCGGGTTTTGTGTG	59.664	47.619	0.00	0.00	0.00	3.82
1852	2042	1.336440	CATGAAGCGGGTTTTGTGTGA	59.664	47.619	0.00	0.00	0.00	3.58
1853	2043	1.686355	TGAAGCGGGTTTTGTGTGAT	58.314	45.000	0.00	0.00	0.00	3.06
1854	2044	2.028130	TGAAGCGGGTTTTGTGTGATT	58.972	42.857	0.00	0.00	0.00	2.57
1855	2045	2.223688	TGAAGCGGGTTTTGTGTGATTG	60.224	45.455	0.00	0.00	0.00	2.67
1856	2046	1.398692	AGCGGGTTTTGTGTGATTGT	58.601	45.000	0.00	0.00	0.00	2.71
1857	2047	1.066908	AGCGGGTTTTGTGTGATTGTG	59.933	47.619	0.00	0.00	0.00	3.33
1858	2048	1.066303	GCGGGTTTTGTGTGATTGTGA	59.934	47.619	0.00	0.00	0.00	3.58
1859	2049	2.726633	CGGGTTTTGTGTGATTGTGAC	58.273	47.619	0.00	0.00	0.00	3.67
1860	2050	2.357637	CGGGTTTTGTGTGATTGTGACT	59.642	45.455	0.00	0.00	0.00	3.41
1861	2051	3.548014	CGGGTTTTGTGTGATTGTGACTC	60.548	47.826	0.00	0.00	0.00	3.36
1862	2052	3.243401	GGGTTTTGTGTGATTGTGACTCC	60.243	47.826	0.00	0.00	0.00	3.85
1863	2053	3.548014	GGTTTTGTGTGATTGTGACTCCG	60.548	47.826	0.00	0.00	0.00	4.63
1864	2054	2.613026	TTGTGTGATTGTGACTCCGT	57.387	45.000	0.00	0.00	0.00	4.69
1869	2059	4.056050	GTGTGATTGTGACTCCGTAACTT	58.944	43.478	0.00	0.00	0.00	2.66
2111	2307	3.950397	TCGACTATTGCCATTGGACTTT	58.050	40.909	6.95	0.00	0.00	2.66
2367	2703	5.445069	TCTTCCTTTGTGACTTCCAAATCA	58.555	37.500	0.00	0.00	31.85	2.57
2456	2793	4.388485	ACAAATGACCCAATTTCTTTGCC	58.612	39.130	0.00	0.00	33.73	4.52
2528	2866	4.442073	GTGCTTTTGTACTGACTTTGCATG	59.558	41.667	0.00	0.00	32.12	4.06
2578	2916	7.412020	GCACTAGCAAGTTCACACTTAGATAAC	60.412	40.741	0.00	0.00	41.69	1.89
2617	2955	5.860182	CACTGAAGCTGTTATTTCACCATTG	59.140	40.000	0.00	0.00	30.66	2.82
2866	3207	3.760684	GAGGTTTCCTTGACTGCATTCAT	59.239	43.478	7.66	0.00	31.76	2.57
3135	3887	4.631377	TGTAGATTCACTCATTTTGCTCCG	59.369	41.667	0.00	0.00	0.00	4.63
3146	3898	6.767902	ACTCATTTTGCTCCGTATGTAATCAT	59.232	34.615	0.00	0.00	38.00	2.45
3147	3899	7.283127	ACTCATTTTGCTCCGTATGTAATCATT	59.717	33.333	0.00	0.00	35.70	2.57
3156	3908	7.915397	GCTCCGTATGTAATCATTTGTTGAAAT	59.085	33.333	0.00	0.00	38.03	2.17
3158	3910	9.173021	TCCGTATGTAATCATTTGTTGAAATCT	57.827	29.630	0.00	0.00	38.03	2.40
3159	3911	9.438291	CCGTATGTAATCATTTGTTGAAATCTC	57.562	33.333	0.00	0.00	38.03	2.75

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
7	8	4.202233	TGAACCAAGCAGATGCAATTGAAA	60.202	37.500	10.34	0.00	45.16	2.69
102	103	8.225603	ACTTGAGTTGAAATTGTACAATCAGT	57.774	30.769	21.02	9.92	0.00	3.41
114	115	4.464008	TCAGCAGGAACTTGAGTTGAAAT	58.536	39.130	0.30	0.00	38.56	2.17
395	431	2.413371	GCTCGAGTTCAGAAACAATGCC	60.413	50.000	15.13	0.00	37.88	4.40
398	434	3.248602	GTGTGCTCGAGTTCAGAAACAAT	59.751	43.478	15.13	0.00	37.88	2.71
519	555	0.825010	AGATACCCGTCGGCCGTATT	60.825	55.000	27.15	8.83	33.66	1.89
520	556	0.825010	AAGATACCCGTCGGCCGTAT	60.825	55.000	27.15	15.20	33.66	3.06
521	557	1.453745	AAGATACCCGTCGGCCGTA	60.454	57.895	27.15	10.29	33.66	4.02
522	558	2.757099	AAGATACCCGTCGGCCGT	60.757	61.111	27.15	7.91	33.66	5.68
523	559	1.727511	TACAAGATACCCGTCGGCCG	61.728	60.000	22.12	22.12	0.00	6.13
524	560	0.677842	ATACAAGATACCCGTCGGCC	59.322	55.000	5.50	0.00	0.00	6.13
525	561	1.604693	CCATACAAGATACCCGTCGGC	60.605	57.143	5.50	0.00	0.00	5.54
526	562	1.684983	ACCATACAAGATACCCGTCGG	59.315	52.381	3.60	3.60	0.00	4.79
527	563	2.545113	CCACCATACAAGATACCCGTCG	60.545	54.545	0.00	0.00	0.00	5.12
528	564	2.224209	CCCACCATACAAGATACCCGTC	60.224	54.545	0.00	0.00	0.00	4.79
529	565	1.766496	CCCACCATACAAGATACCCGT	59.234	52.381	0.00	0.00	0.00	5.28
530	566	1.542547	GCCCACCATACAAGATACCCG	60.543	57.143	0.00	0.00	0.00	5.28
531	567	1.202891	GGCCCACCATACAAGATACCC	60.203	57.143	0.00	0.00	35.26	3.69
532	568	1.493022	TGGCCCACCATACAAGATACC	59.507	52.381	0.00	0.00	42.67	2.73
543	579	2.123511	CACAAACCTGGCCCACCA	60.124	61.111	0.00	0.00	46.51	4.17
544	580	2.917227	CCACAAACCTGGCCCACC	60.917	66.667	0.00	0.00	0.00	4.61
545	581	2.123468	ACCACAAACCTGGCCCAC	60.123	61.111	0.00	0.00	34.20	4.61
546	582	2.123511	CACCACAAACCTGGCCCA	60.124	61.111	0.00	0.00	34.20	5.36
547	583	2.917227	CCACCACAAACCTGGCCC	60.917	66.667	0.00	0.00	34.20	5.80
548	584	1.903404	CTCCACCACAAACCTGGCC	60.903	63.158	0.00	0.00	34.20	5.36
549	585	1.903404	CCTCCACCACAAACCTGGC	60.903	63.158	0.00	0.00	34.20	4.85
550	586	0.250901	CTCCTCCACCACAAACCTGG	60.251	60.000	0.00	0.00	37.33	4.45
551	587	0.890996	GCTCCTCCACCACAAACCTG	60.891	60.000	0.00	0.00	0.00	4.00
552	588	1.352622	TGCTCCTCCACCACAAACCT	61.353	55.000	0.00	0.00	0.00	3.50
553	589	1.150536	TGCTCCTCCACCACAAACC	59.849	57.895	0.00	0.00	0.00	3.27
554	590	2.331265	GTGCTCCTCCACCACAAAC	58.669	57.895	0.00	0.00	0.00	2.93
555	591	4.898607	GTGCTCCTCCACCACAAA	57.101	55.556	0.00	0.00	0.00	2.83
919	1005	0.457166	TGCCATCGTTAACGTCCTCG	60.457	55.000	25.98	12.09	40.80	4.63
1129	1215	8.608844	AATAAATTCATACCTTCGAGTCCATC	57.391	34.615	0.00	0.00	0.00	3.51
1440	1607	6.485984	TGCAAAATTTTCCAACTGCATTATGT	59.514	30.769	8.51	0.00	35.02	2.29
1450	1617	6.902224	AAGTACAGTGCAAAATTTTCCAAC	57.098	33.333	0.00	0.11	0.00	3.77
1481	1648	7.041235	CCAAATTTTAACCTGTGCAATGTCATT	60.041	33.333	0.00	0.00	0.00	2.57
1522	1689	7.630242	AAACTGTGACCATGTATTTAGGATG	57.370	36.000	0.00	0.00	0.00	3.51
1764	1931	9.533253	AACATTTTTCAAGTCTTTTATCAGTGG	57.467	29.630	0.00	0.00	0.00	4.00
1845	2035	2.613026	ACGGAGTCACAATCACACAA	57.387	45.000	0.00	0.00	29.74	3.33
1846	2036	3.069016	AGTTACGGAGTCACAATCACACA	59.931	43.478	0.00	0.00	43.93	3.72
1847	2037	3.650139	AGTTACGGAGTCACAATCACAC	58.350	45.455	0.00	0.00	43.93	3.82
1848	2038	4.330944	AAGTTACGGAGTCACAATCACA	57.669	40.909	0.00	0.00	43.93	3.58
1849	2039	6.774354	TTTAAGTTACGGAGTCACAATCAC	57.226	37.500	0.00	0.00	43.93	3.06
1850	2040	7.094975	CCATTTTAAGTTACGGAGTCACAATCA	60.095	37.037	0.00	0.00	43.93	2.57
1851	2041	7.241376	CCATTTTAAGTTACGGAGTCACAATC	58.759	38.462	0.00	0.00	43.93	2.67
1852	2042	6.150474	CCCATTTTAAGTTACGGAGTCACAAT	59.850	38.462	0.00	0.00	43.93	2.71
1853	2043	5.470777	CCCATTTTAAGTTACGGAGTCACAA	59.529	40.000	0.00	0.00	43.93	3.33
1854	2044	4.998672	CCCATTTTAAGTTACGGAGTCACA	59.001	41.667	0.00	0.00	43.93	3.58
1855	2045	4.142752	GCCCATTTTAAGTTACGGAGTCAC	60.143	45.833	0.00	0.00	43.93	3.67
1856	2046	4.004982	GCCCATTTTAAGTTACGGAGTCA	58.995	43.478	0.00	0.00	43.93	3.41
1857	2047	4.094442	CAGCCCATTTTAAGTTACGGAGTC	59.906	45.833	0.00	0.00	43.93	3.36
1859	2049	3.181500	GCAGCCCATTTTAAGTTACGGAG	60.181	47.826	0.00	0.00	0.00	4.63
1860	2050	2.750712	GCAGCCCATTTTAAGTTACGGA	59.249	45.455	0.00	0.00	0.00	4.69
1861	2051	2.752903	AGCAGCCCATTTTAAGTTACGG	59.247	45.455	0.00	0.00	0.00	4.02
1862	2052	3.758300	CAGCAGCCCATTTTAAGTTACG	58.242	45.455	0.00	0.00	0.00	3.18
1863	2053	3.193479	AGCAGCAGCCCATTTTAAGTTAC	59.807	43.478	0.00	0.00	43.56	2.50
1864	2054	3.193267	CAGCAGCAGCCCATTTTAAGTTA	59.807	43.478	0.00	0.00	43.56	2.24
1869	2059	0.612732	AGCAGCAGCAGCCCATTTTA	60.613	50.000	6.10	0.00	45.49	1.52
2111	2307	4.155826	CGTATGCTTCACCCAAAAGAATCA	59.844	41.667	0.00	0.00	0.00	2.57
2191	2387	6.931281	CCATACCACTATACATCAGTTTCAGG	59.069	42.308	0.00	0.00	0.00	3.86
2305	2638	7.870509	TTCTCCAGACTGAAATCATATTTGG	57.129	36.000	3.32	0.41	0.00	3.28
2367	2703	3.199727	ACAACCCAGTGGCTTTTGATTTT	59.800	39.130	18.37	0.00	33.59	1.82
2407	2744	8.455682	TCCTACTTTGTGTTAACAACTTTCAAG	58.544	33.333	10.51	8.58	45.91	3.02
2456	2793	5.816449	AAGCAAACCCAACAAAAATGAAG	57.184	34.783	0.00	0.00	0.00	3.02
2528	2866	6.128526	GCATACAAAATACTAGGATTCGGAGC	60.129	42.308	0.00	0.00	0.00	4.70
2578	2916	5.873712	AGCTTCAGTGTGATCACAAGAATAG	59.126	40.000	29.96	23.95	46.01	1.73
2617	2955	3.363970	CGGTGACAATCAGTACAACTTGC	60.364	47.826	0.00	0.00	0.00	4.01
2866	3207	2.805546	GCGGTCTGGTCTGCGATA	59.194	61.111	0.00	0.00	0.00	2.92
2932	3273	4.706842	AGTTGAGGTGTACAGATGGTTT	57.293	40.909	0.00	0.00	0.00	3.27

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.