Multiple sequence alignment - TraesCS4D01G324500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G324500 chr4D 100.000 2302 0 0 916 3217 485065562 485063261 0.000000e+00 4252.0
1 TraesCS4D01G324500 chr4D 99.696 2301 6 1 916 3215 485043619 485041319 0.000000e+00 4209.0
2 TraesCS4D01G324500 chr4D 91.530 1464 102 12 919 2368 484952433 484950978 0.000000e+00 1997.0
3 TraesCS4D01G324500 chr4D 81.083 1570 208 39 916 2466 484927952 484926453 0.000000e+00 1171.0
4 TraesCS4D01G324500 chr4D 89.844 896 75 9 1486 2377 484929896 484929013 0.000000e+00 1136.0
5 TraesCS4D01G324500 chr4D 100.000 599 0 0 1 599 485066477 485065879 0.000000e+00 1107.0
6 TraesCS4D01G324500 chr4D 90.261 421 27 8 916 1325 484934512 484934095 3.650000e-149 538.0
7 TraesCS4D01G324500 chr4D 84.848 99 14 1 2630 2728 473975827 473975924 7.340000e-17 99.0
8 TraesCS4D01G324500 chr5A 93.980 1578 67 8 950 2523 666117233 666115680 0.000000e+00 2362.0
9 TraesCS4D01G324500 chr5A 90.392 791 70 4 1468 2257 666073533 666072748 0.000000e+00 1035.0
10 TraesCS4D01G324500 chr5A 92.034 590 39 5 2629 3215 749100 749684 0.000000e+00 822.0
11 TraesCS4D01G324500 chr5A 85.984 371 43 5 957 1321 666074004 666073637 3.890000e-104 388.0
12 TraesCS4D01G324500 chr4B 95.726 1170 45 3 1465 2630 618251542 618250374 0.000000e+00 1879.0
13 TraesCS4D01G324500 chr4B 80.102 1573 215 37 916 2466 618227673 618226177 0.000000e+00 1081.0
14 TraesCS4D01G324500 chr4B 94.363 479 16 5 916 1393 618252284 618251816 0.000000e+00 725.0
15 TraesCS4D01G324500 chr4B 90.909 407 23 8 916 1310 618241641 618241237 4.720000e-148 534.0
16 TraesCS4D01G324500 chr4B 90.756 119 8 2 2 117 618260679 618260561 4.300000e-34 156.0
17 TraesCS4D01G324500 chr4B 82.270 141 13 6 109 237 618257217 618257077 9.430000e-21 111.0
18 TraesCS4D01G324500 chrUn 84.987 766 114 1 1493 2257 46203795 46204560 0.000000e+00 776.0
19 TraesCS4D01G324500 chrUn 89.216 102 8 3 2635 2734 352484393 352484493 1.210000e-24 124.0
20 TraesCS4D01G324500 chrUn 88.235 102 9 3 2635 2734 352502269 352502369 5.640000e-23 119.0
21 TraesCS4D01G324500 chrUn 79.856 139 24 4 234 370 356995555 356995691 7.340000e-17 99.0
22 TraesCS4D01G324500 chr3B 82.781 784 132 2 1476 2258 813902530 813903311 0.000000e+00 697.0
23 TraesCS4D01G324500 chr3B 81.022 137 22 3 236 370 808527216 808527082 4.390000e-19 106.0
24 TraesCS4D01G324500 chr3B 90.278 72 7 0 2665 2736 804386899 804386828 9.500000e-16 95.3
25 TraesCS4D01G324500 chr3B 77.698 139 27 4 234 370 431261876 431262012 7.400000e-12 82.4
26 TraesCS4D01G324500 chr3A 81.377 741 132 5 1483 2219 735976101 735975363 1.650000e-167 599.0
27 TraesCS4D01G324500 chr3A 94.030 67 4 0 1202 1268 701219133 701219067 5.680000e-18 102.0
28 TraesCS4D01G324500 chr7D 75.900 361 73 10 242 589 453288430 453288789 4.270000e-39 172.0
29 TraesCS4D01G324500 chr7B 90.588 85 7 1 2634 2717 66466104 66466188 9.430000e-21 111.0
30 TraesCS4D01G324500 chr3D 77.714 175 35 4 1096 1268 566080716 566080888 1.580000e-18 104.0
31 TraesCS4D01G324500 chr2A 77.717 184 21 15 2626 2790 677173609 677173791 9.500000e-16 95.3
32 TraesCS4D01G324500 chr1B 79.137 139 25 4 234 370 524349872 524349736 3.420000e-15 93.5
33 TraesCS4D01G324500 chr1B 92.105 38 2 1 230 266 432381159 432381122 6.000000e-03 52.8
34 TraesCS4D01G324500 chr7A 92.063 63 5 0 2673 2735 41790954 41790892 4.420000e-14 89.8
35 TraesCS4D01G324500 chr2D 82.857 70 11 1 304 373 476344224 476344156 9.640000e-06 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G324500 chr4D 485063261 485066477 3216 True 2679.5 4252 100.0000 1 3217 2 chr4D.!!$R5 3216
1 TraesCS4D01G324500 chr4D 485041319 485043619 2300 True 4209.0 4209 99.6960 916 3215 1 chr4D.!!$R3 2299
2 TraesCS4D01G324500 chr4D 484950978 484952433 1455 True 1997.0 1997 91.5300 919 2368 1 chr4D.!!$R2 1449
3 TraesCS4D01G324500 chr4D 484926453 484929896 3443 True 1153.5 1171 85.4635 916 2466 2 chr4D.!!$R4 1550
4 TraesCS4D01G324500 chr5A 666115680 666117233 1553 True 2362.0 2362 93.9800 950 2523 1 chr5A.!!$R1 1573
5 TraesCS4D01G324500 chr5A 749100 749684 584 False 822.0 822 92.0340 2629 3215 1 chr5A.!!$F1 586
6 TraesCS4D01G324500 chr5A 666072748 666074004 1256 True 711.5 1035 88.1880 957 2257 2 chr5A.!!$R2 1300
7 TraesCS4D01G324500 chr4B 618250374 618252284 1910 True 1302.0 1879 95.0445 916 2630 2 chr4B.!!$R3 1714
8 TraesCS4D01G324500 chr4B 618226177 618227673 1496 True 1081.0 1081 80.1020 916 2466 1 chr4B.!!$R1 1550
9 TraesCS4D01G324500 chrUn 46203795 46204560 765 False 776.0 776 84.9870 1493 2257 1 chrUn.!!$F1 764
10 TraesCS4D01G324500 chr3B 813902530 813903311 781 False 697.0 697 82.7810 1476 2258 1 chr3B.!!$F2 782
11 TraesCS4D01G324500 chr3A 735975363 735976101 738 True 599.0 599 81.3770 1483 2219 1 chr3A.!!$R2 736

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
502 503 0.038251 CTTTCCCAAAAAGCTCCCGC 60.038 55.0 0.0 0.0 0.0 6.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2656 3981 1.504359 CGAGCCGTCCTTGTGTTTAA 58.496 50.0 0.0 0.0 0.0 1.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 6.385649 ACTTACACATTTCAAATTCGGTGT 57.614 33.333 9.10 9.10 41.76 4.16
40 41 3.380142 ACACATTTCAAATTCGGTGTGC 58.620 40.909 4.37 0.00 40.27 4.57
41 42 3.181482 ACACATTTCAAATTCGGTGTGCA 60.181 39.130 4.37 0.00 40.27 4.57
42 43 3.989167 CACATTTCAAATTCGGTGTGCAT 59.011 39.130 0.00 0.00 31.83 3.96
43 44 3.989167 ACATTTCAAATTCGGTGTGCATG 59.011 39.130 0.00 0.00 0.00 4.06
44 45 3.724508 TTTCAAATTCGGTGTGCATGT 57.275 38.095 0.00 0.00 0.00 3.21
45 46 3.724508 TTCAAATTCGGTGTGCATGTT 57.275 38.095 0.00 0.00 0.00 2.71
46 47 3.724508 TCAAATTCGGTGTGCATGTTT 57.275 38.095 0.00 0.00 0.00 2.83
47 48 3.379240 TCAAATTCGGTGTGCATGTTTG 58.621 40.909 0.00 0.00 0.00 2.93
48 49 3.067320 TCAAATTCGGTGTGCATGTTTGA 59.933 39.130 0.00 0.00 33.30 2.69
49 50 2.704725 ATTCGGTGTGCATGTTTGAC 57.295 45.000 0.00 0.00 0.00 3.18
50 51 1.383523 TTCGGTGTGCATGTTTGACA 58.616 45.000 0.00 0.00 0.00 3.58
51 52 0.660488 TCGGTGTGCATGTTTGACAC 59.340 50.000 0.00 9.57 39.44 3.67
52 53 0.380024 CGGTGTGCATGTTTGACACA 59.620 50.000 16.18 9.43 41.50 3.72
54 55 2.543445 CGGTGTGCATGTTTGACACATT 60.543 45.455 16.18 0.00 44.40 2.71
56 57 3.490590 GGTGTGCATGTTTGACACATTCA 60.491 43.478 16.18 0.00 44.40 2.57
59 60 3.967401 TGCATGTTTGACACATTCACAG 58.033 40.909 0.00 0.00 44.40 3.66
60 61 2.727798 GCATGTTTGACACATTCACAGC 59.272 45.455 0.00 0.00 44.40 4.40
62 63 2.653726 TGTTTGACACATTCACAGCCT 58.346 42.857 0.00 0.00 32.26 4.58
65 66 1.882912 TGACACATTCACAGCCTGAC 58.117 50.000 0.00 0.00 0.00 3.51
67 68 0.106708 ACACATTCACAGCCTGACGT 59.893 50.000 0.00 0.00 0.00 4.34
68 69 0.514255 CACATTCACAGCCTGACGTG 59.486 55.000 0.00 0.00 34.34 4.49
69 70 0.106708 ACATTCACAGCCTGACGTGT 59.893 50.000 0.00 0.00 34.66 4.49
70 71 0.792640 CATTCACAGCCTGACGTGTC 59.207 55.000 0.00 0.00 34.66 3.67
71 72 0.681733 ATTCACAGCCTGACGTGTCT 59.318 50.000 0.00 0.00 34.66 3.41
72 73 0.464036 TTCACAGCCTGACGTGTCTT 59.536 50.000 0.00 0.00 34.66 3.01
73 74 0.464036 TCACAGCCTGACGTGTCTTT 59.536 50.000 0.00 0.00 34.66 2.52
74 75 1.134521 TCACAGCCTGACGTGTCTTTT 60.135 47.619 0.00 0.00 34.66 2.27
94 95 4.370364 TTTTTCTTCTTGTGCTGTGGAC 57.630 40.909 0.00 0.00 0.00 4.02
95 96 3.281727 TTTCTTCTTGTGCTGTGGACT 57.718 42.857 0.00 0.00 0.00 3.85
98 99 2.170397 TCTTCTTGTGCTGTGGACTGAA 59.830 45.455 0.00 0.00 0.00 3.02
99 100 2.936919 TCTTGTGCTGTGGACTGAAT 57.063 45.000 0.00 0.00 0.00 2.57
100 101 3.213206 TCTTGTGCTGTGGACTGAATT 57.787 42.857 0.00 0.00 0.00 2.17
101 102 3.554934 TCTTGTGCTGTGGACTGAATTT 58.445 40.909 0.00 0.00 0.00 1.82
102 103 3.953612 TCTTGTGCTGTGGACTGAATTTT 59.046 39.130 0.00 0.00 0.00 1.82
103 104 3.713858 TGTGCTGTGGACTGAATTTTG 57.286 42.857 0.00 0.00 0.00 2.44
104 105 3.286353 TGTGCTGTGGACTGAATTTTGA 58.714 40.909 0.00 0.00 0.00 2.69
105 106 3.698539 TGTGCTGTGGACTGAATTTTGAA 59.301 39.130 0.00 0.00 0.00 2.69
106 107 4.159321 TGTGCTGTGGACTGAATTTTGAAA 59.841 37.500 0.00 0.00 0.00 2.69
107 108 5.163426 TGTGCTGTGGACTGAATTTTGAAAT 60.163 36.000 0.00 0.00 0.00 2.17
108 109 5.176223 GTGCTGTGGACTGAATTTTGAAATG 59.824 40.000 0.00 0.00 0.00 2.32
110 111 4.630111 TGTGGACTGAATTTTGAAATGGC 58.370 39.130 0.00 0.00 0.00 4.40
111 112 4.100653 TGTGGACTGAATTTTGAAATGGCA 59.899 37.500 0.00 0.00 0.00 4.92
112 113 5.055812 GTGGACTGAATTTTGAAATGGCAA 58.944 37.500 0.00 0.00 0.00 4.52
113 114 5.702209 GTGGACTGAATTTTGAAATGGCAAT 59.298 36.000 0.00 0.00 0.00 3.56
114 115 6.205270 GTGGACTGAATTTTGAAATGGCAATT 59.795 34.615 0.00 0.00 0.00 2.32
124 125 3.244976 GAAATGGCAATTTCTGACGTGG 58.755 45.455 17.82 0.00 45.56 4.94
128 129 1.606668 GGCAATTTCTGACGTGGTGAA 59.393 47.619 0.00 0.00 0.00 3.18
129 130 2.034053 GGCAATTTCTGACGTGGTGAAA 59.966 45.455 0.00 0.77 34.75 2.69
130 131 3.490078 GGCAATTTCTGACGTGGTGAAAA 60.490 43.478 0.00 0.00 34.09 2.29
132 133 4.667262 CAATTTCTGACGTGGTGAAAACA 58.333 39.130 0.00 0.00 34.09 2.83
133 134 5.280945 CAATTTCTGACGTGGTGAAAACAT 58.719 37.500 0.00 0.00 34.09 2.71
134 135 4.545823 TTTCTGACGTGGTGAAAACATC 57.454 40.909 0.00 0.00 0.00 3.06
135 136 3.469008 TCTGACGTGGTGAAAACATCT 57.531 42.857 0.00 0.00 0.00 2.90
137 138 3.559655 TCTGACGTGGTGAAAACATCTTG 59.440 43.478 0.00 0.00 0.00 3.02
138 139 3.275143 TGACGTGGTGAAAACATCTTGT 58.725 40.909 0.00 0.00 0.00 3.16
140 141 5.060506 TGACGTGGTGAAAACATCTTGTAT 58.939 37.500 0.00 0.00 0.00 2.29
141 142 5.529430 TGACGTGGTGAAAACATCTTGTATT 59.471 36.000 0.00 0.00 0.00 1.89
142 143 6.706716 TGACGTGGTGAAAACATCTTGTATTA 59.293 34.615 0.00 0.00 0.00 0.98
143 144 7.226918 TGACGTGGTGAAAACATCTTGTATTAA 59.773 33.333 0.00 0.00 0.00 1.40
144 145 8.106247 ACGTGGTGAAAACATCTTGTATTAAT 57.894 30.769 0.00 0.00 0.00 1.40
145 146 8.020819 ACGTGGTGAAAACATCTTGTATTAATG 58.979 33.333 0.00 0.00 0.00 1.90
146 147 8.020819 CGTGGTGAAAACATCTTGTATTAATGT 58.979 33.333 0.00 0.00 35.20 2.71
148 149 9.689976 TGGTGAAAACATCTTGTATTAATGTTG 57.310 29.630 0.00 0.00 41.47 3.33
149 150 9.691362 GGTGAAAACATCTTGTATTAATGTTGT 57.309 29.630 0.00 0.00 41.47 3.32
183 184 9.533253 AAACTGTAATAATTAAAGGCATGCATC 57.467 29.630 21.36 2.42 0.00 3.91
184 185 8.469309 ACTGTAATAATTAAAGGCATGCATCT 57.531 30.769 21.36 0.25 0.00 2.90
185 186 8.355169 ACTGTAATAATTAAAGGCATGCATCTG 58.645 33.333 21.36 3.06 0.00 2.90
186 187 7.660112 TGTAATAATTAAAGGCATGCATCTGG 58.340 34.615 21.36 0.00 0.00 3.86
187 188 6.736110 AATAATTAAAGGCATGCATCTGGT 57.264 33.333 21.36 1.47 0.00 4.00
189 190 3.370840 TTAAAGGCATGCATCTGGTCT 57.629 42.857 21.36 1.85 0.00 3.85
191 192 0.622136 AAGGCATGCATCTGGTCTGA 59.378 50.000 21.36 0.00 0.00 3.27
192 193 0.622136 AGGCATGCATCTGGTCTGAA 59.378 50.000 21.36 0.00 0.00 3.02
194 195 1.456296 GCATGCATCTGGTCTGAACA 58.544 50.000 14.21 0.00 0.00 3.18
196 197 2.426024 GCATGCATCTGGTCTGAACATT 59.574 45.455 14.21 0.00 0.00 2.71
199 200 2.224843 TGCATCTGGTCTGAACATTGGT 60.225 45.455 0.00 0.00 0.00 3.67
200 201 2.163010 GCATCTGGTCTGAACATTGGTG 59.837 50.000 0.00 0.00 0.00 4.17
202 203 2.849942 TCTGGTCTGAACATTGGTGTG 58.150 47.619 0.00 0.00 38.92 3.82
203 204 2.437651 TCTGGTCTGAACATTGGTGTGA 59.562 45.455 0.00 0.00 38.92 3.58
204 205 3.072915 TCTGGTCTGAACATTGGTGTGAT 59.927 43.478 0.00 0.00 38.92 3.06
205 206 3.822735 CTGGTCTGAACATTGGTGTGATT 59.177 43.478 0.00 0.00 38.92 2.57
206 207 3.820467 TGGTCTGAACATTGGTGTGATTC 59.180 43.478 0.00 0.00 38.92 2.52
207 208 3.120199 GGTCTGAACATTGGTGTGATTCG 60.120 47.826 0.00 0.00 38.92 3.34
208 209 3.745975 GTCTGAACATTGGTGTGATTCGA 59.254 43.478 0.00 0.00 38.92 3.71
209 210 4.213270 GTCTGAACATTGGTGTGATTCGAA 59.787 41.667 0.00 0.00 38.92 3.71
210 211 4.452114 TCTGAACATTGGTGTGATTCGAAG 59.548 41.667 3.35 0.00 38.92 3.79
211 212 3.058293 TGAACATTGGTGTGATTCGAAGC 60.058 43.478 6.43 6.43 38.92 3.86
212 213 1.812571 ACATTGGTGTGATTCGAAGCC 59.187 47.619 11.45 2.97 37.14 4.35
213 214 1.086696 ATTGGTGTGATTCGAAGCCG 58.913 50.000 11.45 0.00 37.07 5.52
214 215 0.250124 TTGGTGTGATTCGAAGCCGT 60.250 50.000 11.45 0.00 37.05 5.68
215 216 0.250124 TGGTGTGATTCGAAGCCGTT 60.250 50.000 11.45 0.00 37.05 4.44
216 217 0.442699 GGTGTGATTCGAAGCCGTTC 59.557 55.000 11.45 0.00 37.05 3.95
217 218 1.144969 GTGTGATTCGAAGCCGTTCA 58.855 50.000 11.45 2.40 37.05 3.18
218 219 1.529438 GTGTGATTCGAAGCCGTTCAA 59.471 47.619 11.45 0.00 37.05 2.69
219 220 2.159627 GTGTGATTCGAAGCCGTTCAAT 59.840 45.455 11.45 0.00 37.05 2.57
220 221 2.811431 TGTGATTCGAAGCCGTTCAATT 59.189 40.909 11.45 0.00 37.05 2.32
221 222 3.252215 TGTGATTCGAAGCCGTTCAATTT 59.748 39.130 11.45 0.00 37.05 1.82
225 226 3.536158 TCGAAGCCGTTCAATTTTCTG 57.464 42.857 0.00 0.00 37.05 3.02
226 227 2.225491 TCGAAGCCGTTCAATTTTCTGG 59.775 45.455 0.00 0.00 37.05 3.86
227 228 2.031157 CGAAGCCGTTCAATTTTCTGGT 60.031 45.455 0.00 0.00 32.36 4.00
231 232 2.223947 GCCGTTCAATTTTCTGGTTGGT 60.224 45.455 0.00 0.00 0.00 3.67
232 233 3.380142 CCGTTCAATTTTCTGGTTGGTG 58.620 45.455 0.00 0.00 0.00 4.17
233 234 2.794350 CGTTCAATTTTCTGGTTGGTGC 59.206 45.455 0.00 0.00 0.00 5.01
234 235 2.791383 TCAATTTTCTGGTTGGTGCG 57.209 45.000 0.00 0.00 0.00 5.34
235 236 2.302260 TCAATTTTCTGGTTGGTGCGA 58.698 42.857 0.00 0.00 0.00 5.10
236 237 2.890311 TCAATTTTCTGGTTGGTGCGAT 59.110 40.909 0.00 0.00 0.00 4.58
238 239 4.083003 TCAATTTTCTGGTTGGTGCGATAC 60.083 41.667 0.00 0.00 0.00 2.24
239 240 2.851263 TTTCTGGTTGGTGCGATACT 57.149 45.000 0.00 0.00 0.00 2.12
241 242 3.965379 TTCTGGTTGGTGCGATACTAA 57.035 42.857 0.00 0.00 0.00 2.24
242 243 3.520290 TCTGGTTGGTGCGATACTAAG 57.480 47.619 0.00 0.00 29.73 2.18
243 244 3.093814 TCTGGTTGGTGCGATACTAAGA 58.906 45.455 0.00 0.00 29.73 2.10
244 245 3.130516 TCTGGTTGGTGCGATACTAAGAG 59.869 47.826 0.00 0.00 29.73 2.85
245 246 2.202566 GGTTGGTGCGATACTAAGAGC 58.797 52.381 0.00 0.00 29.73 4.09
246 247 2.418197 GGTTGGTGCGATACTAAGAGCA 60.418 50.000 0.00 0.00 37.26 4.26
247 248 3.259064 GTTGGTGCGATACTAAGAGCAA 58.741 45.455 0.00 0.00 41.56 3.91
248 249 2.888594 TGGTGCGATACTAAGAGCAAC 58.111 47.619 0.00 0.00 46.51 4.17
249 250 2.496070 TGGTGCGATACTAAGAGCAACT 59.504 45.455 5.91 0.00 46.47 3.16
250 251 3.117046 GGTGCGATACTAAGAGCAACTC 58.883 50.000 0.00 0.00 43.34 3.01
251 252 3.117046 GTGCGATACTAAGAGCAACTCC 58.883 50.000 0.00 0.00 41.56 3.85
252 253 2.758423 TGCGATACTAAGAGCAACTCCA 59.242 45.455 0.00 0.00 36.60 3.86
253 254 3.194755 TGCGATACTAAGAGCAACTCCAA 59.805 43.478 0.00 0.00 36.60 3.53
254 255 4.141937 TGCGATACTAAGAGCAACTCCAAT 60.142 41.667 0.00 0.00 36.60 3.16
255 256 4.210120 GCGATACTAAGAGCAACTCCAATG 59.790 45.833 0.00 0.00 0.00 2.82
256 257 4.210120 CGATACTAAGAGCAACTCCAATGC 59.790 45.833 0.00 0.00 44.15 3.56
263 264 2.746277 AACTCCAATGCGGCGACC 60.746 61.111 12.98 0.00 33.14 4.79
265 266 1.895020 AACTCCAATGCGGCGACCTA 61.895 55.000 12.98 0.00 33.14 3.08
266 267 1.069765 CTCCAATGCGGCGACCTAT 59.930 57.895 12.98 0.00 33.14 2.57
267 268 0.532862 CTCCAATGCGGCGACCTATT 60.533 55.000 12.98 1.93 33.14 1.73
271 272 0.461339 AATGCGGCGACCTATTTCGT 60.461 50.000 12.98 0.00 41.26 3.85
273 274 2.235699 GCGGCGACCTATTTCGTCC 61.236 63.158 12.98 0.00 40.60 4.79
274 275 1.942712 CGGCGACCTATTTCGTCCG 60.943 63.158 0.00 11.78 45.30 4.79
275 276 2.235699 GGCGACCTATTTCGTCCGC 61.236 63.158 0.00 0.00 41.26 5.54
277 278 1.749609 GCGACCTATTTCGTCCGCAC 61.750 60.000 0.00 0.00 41.26 5.34
279 280 1.143969 GACCTATTTCGTCCGCACGG 61.144 60.000 0.00 1.73 46.70 4.94
280 281 1.153706 CCTATTTCGTCCGCACGGT 60.154 57.895 9.23 0.00 46.70 4.83
281 282 0.738412 CCTATTTCGTCCGCACGGTT 60.738 55.000 9.23 0.00 46.70 4.44
283 284 1.072116 TATTTCGTCCGCACGGTTCG 61.072 55.000 9.23 14.49 46.70 3.95
286 287 3.332409 CGTCCGCACGGTTCGTTT 61.332 61.111 9.23 0.00 42.73 3.60
288 289 2.968156 TCCGCACGGTTCGTTTGG 60.968 61.111 9.23 0.00 38.32 3.28
289 290 4.020378 CCGCACGGTTCGTTTGGG 62.020 66.667 0.00 0.00 38.32 4.12
290 291 3.273834 CGCACGGTTCGTTTGGGT 61.274 61.111 0.00 0.00 38.32 4.51
291 292 2.635338 GCACGGTTCGTTTGGGTC 59.365 61.111 0.00 0.00 38.32 4.46
293 294 1.716826 GCACGGTTCGTTTGGGTCAA 61.717 55.000 0.00 0.00 38.32 3.18
294 295 0.733729 CACGGTTCGTTTGGGTCAAA 59.266 50.000 0.00 0.00 38.32 2.69
300 301 3.431856 GTTCGTTTGGGTCAAAACTGAC 58.568 45.455 0.00 0.00 37.80 3.51
301 302 2.712709 TCGTTTGGGTCAAAACTGACA 58.287 42.857 7.51 0.00 40.38 3.58
302 303 2.420722 TCGTTTGGGTCAAAACTGACAC 59.579 45.455 7.51 4.18 42.26 3.67
308 309 4.450082 GGGTCAAAACTGACACAAAAGT 57.550 40.909 7.51 0.00 41.59 2.66
310 311 4.095610 GGTCAAAACTGACACAAAAGTCG 58.904 43.478 7.51 0.00 41.41 4.18
313 314 1.021968 AACTGACACAAAAGTCGGCC 58.978 50.000 0.00 0.00 46.48 6.13
314 315 0.818040 ACTGACACAAAAGTCGGCCC 60.818 55.000 0.00 0.00 46.48 5.80
316 317 0.394488 TGACACAAAAGTCGGCCCAA 60.394 50.000 0.00 0.00 41.41 4.12
317 318 0.958822 GACACAAAAGTCGGCCCAAT 59.041 50.000 0.00 0.00 0.00 3.16
318 319 0.673437 ACACAAAAGTCGGCCCAATG 59.327 50.000 0.00 0.00 0.00 2.82
319 320 0.667184 CACAAAAGTCGGCCCAATGC 60.667 55.000 0.00 0.00 40.16 3.56
320 321 1.112315 ACAAAAGTCGGCCCAATGCA 61.112 50.000 0.00 0.00 43.89 3.96
321 322 0.247185 CAAAAGTCGGCCCAATGCAT 59.753 50.000 0.00 0.00 43.89 3.96
324 325 2.513666 GTCGGCCCAATGCATCGA 60.514 61.111 0.00 0.70 43.89 3.59
325 326 2.513666 TCGGCCCAATGCATCGAC 60.514 61.111 0.00 0.00 43.89 4.20
327 328 3.219198 GGCCCAATGCATCGACCC 61.219 66.667 0.00 0.00 43.89 4.46
329 330 2.051518 GCCCAATGCATCGACCCAA 61.052 57.895 0.00 0.00 40.77 4.12
330 331 1.603236 GCCCAATGCATCGACCCAAA 61.603 55.000 0.00 0.00 40.77 3.28
331 332 0.173255 CCCAATGCATCGACCCAAAC 59.827 55.000 0.00 0.00 0.00 2.93
332 333 0.179166 CCAATGCATCGACCCAAACG 60.179 55.000 0.00 0.00 0.00 3.60
335 336 0.802494 ATGCATCGACCCAAACGAAC 59.198 50.000 0.00 0.00 42.80 3.95
336 337 0.533085 TGCATCGACCCAAACGAACA 60.533 50.000 0.00 0.00 42.80 3.18
337 338 0.802494 GCATCGACCCAAACGAACAT 59.198 50.000 0.00 0.00 42.80 2.71
338 339 1.465689 GCATCGACCCAAACGAACATG 60.466 52.381 0.00 0.00 42.80 3.21
339 340 1.804151 CATCGACCCAAACGAACATGT 59.196 47.619 0.00 0.00 42.80 3.21
340 341 1.222300 TCGACCCAAACGAACATGTG 58.778 50.000 0.00 0.00 36.84 3.21
341 342 0.941542 CGACCCAAACGAACATGTGT 59.058 50.000 0.00 0.00 0.00 3.72
343 344 2.223386 CGACCCAAACGAACATGTGTTT 60.223 45.455 0.00 3.59 38.56 2.83
348 349 4.838665 CAAACGAACATGTGTTTGCTTT 57.161 36.364 21.76 9.28 45.64 3.51
350 351 5.247340 CAAACGAACATGTGTTTGCTTTTC 58.753 37.500 21.76 4.11 45.64 2.29
351 352 3.105203 ACGAACATGTGTTTGCTTTTCG 58.895 40.909 12.00 4.03 41.91 3.46
352 353 3.105203 CGAACATGTGTTTGCTTTTCGT 58.895 40.909 0.00 0.00 38.56 3.85
353 354 3.545873 CGAACATGTGTTTGCTTTTCGTT 59.454 39.130 0.00 0.00 38.56 3.85
354 355 4.316377 CGAACATGTGTTTGCTTTTCGTTC 60.316 41.667 0.00 0.00 38.56 3.95
356 357 1.540407 TGTGTTTGCTTTTCGTTCGC 58.460 45.000 0.00 0.00 0.00 4.70
357 358 1.131504 TGTGTTTGCTTTTCGTTCGCT 59.868 42.857 0.00 0.00 0.00 4.93
358 359 2.182014 GTGTTTGCTTTTCGTTCGCTT 58.818 42.857 0.00 0.00 0.00 4.68
359 360 2.035756 GTGTTTGCTTTTCGTTCGCTTG 60.036 45.455 0.00 0.00 0.00 4.01
360 361 1.072154 GTTTGCTTTTCGTTCGCTTGC 60.072 47.619 0.00 0.00 0.00 4.01
362 363 2.074920 GCTTTTCGTTCGCTTGCCG 61.075 57.895 0.00 0.00 38.61 5.69
363 364 1.567537 CTTTTCGTTCGCTTGCCGA 59.432 52.632 0.00 0.00 45.77 5.54
371 372 3.508840 CGCTTGCCGACCCATTCC 61.509 66.667 0.00 0.00 40.02 3.01
373 374 2.354729 CTTGCCGACCCATTCCCA 59.645 61.111 0.00 0.00 0.00 4.37
374 375 1.750399 CTTGCCGACCCATTCCCAG 60.750 63.158 0.00 0.00 0.00 4.45
375 376 3.936772 TTGCCGACCCATTCCCAGC 62.937 63.158 0.00 0.00 0.00 4.85
376 377 4.115199 GCCGACCCATTCCCAGCT 62.115 66.667 0.00 0.00 0.00 4.24
377 378 2.190578 CCGACCCATTCCCAGCTC 59.809 66.667 0.00 0.00 0.00 4.09
378 379 2.669133 CCGACCCATTCCCAGCTCA 61.669 63.158 0.00 0.00 0.00 4.26
379 380 1.299648 CGACCCATTCCCAGCTCAA 59.700 57.895 0.00 0.00 0.00 3.02
381 382 1.177401 GACCCATTCCCAGCTCAAAC 58.823 55.000 0.00 0.00 0.00 2.93
383 384 0.251742 CCCATTCCCAGCTCAAACCA 60.252 55.000 0.00 0.00 0.00 3.67
385 386 1.272092 CCATTCCCAGCTCAAACCAGA 60.272 52.381 0.00 0.00 0.00 3.86
386 387 2.622452 CCATTCCCAGCTCAAACCAGAT 60.622 50.000 0.00 0.00 0.00 2.90
388 389 2.978156 TCCCAGCTCAAACCAGATTT 57.022 45.000 0.00 0.00 0.00 2.17
390 391 3.686016 TCCCAGCTCAAACCAGATTTAC 58.314 45.455 0.00 0.00 0.00 2.01
392 393 3.074412 CCAGCTCAAACCAGATTTACGT 58.926 45.455 0.00 0.00 0.00 3.57
393 394 3.120199 CCAGCTCAAACCAGATTTACGTG 60.120 47.826 0.00 0.00 0.00 4.49
394 395 3.074412 AGCTCAAACCAGATTTACGTGG 58.926 45.455 0.00 0.00 39.98 4.94
396 397 2.156098 TCAAACCAGATTTACGTGGGC 58.844 47.619 0.00 0.00 38.25 5.36
399 400 2.701006 CAGATTTACGTGGGCGCG 59.299 61.111 0.00 0.00 42.83 6.86
400 401 2.510691 AGATTTACGTGGGCGCGG 60.511 61.111 8.83 0.00 42.83 6.46
401 402 3.569690 GATTTACGTGGGCGCGGG 61.570 66.667 8.83 0.00 42.83 6.13
422 423 3.475774 GAAACGGACGCGCGTGAT 61.476 61.111 42.90 22.39 0.00 3.06
423 424 3.680072 GAAACGGACGCGCGTGATG 62.680 63.158 42.90 29.50 0.00 3.07
436 437 2.041922 TGATGGGCGCCTACTCCT 60.042 61.111 28.56 4.43 0.00 3.69
437 438 2.134287 TGATGGGCGCCTACTCCTC 61.134 63.158 28.56 15.47 0.00 3.71
438 439 2.844839 ATGGGCGCCTACTCCTCC 60.845 66.667 28.56 7.32 0.00 4.30
440 441 4.862823 GGGCGCCTACTCCTCCCT 62.863 72.222 28.56 0.00 34.19 4.20
441 442 2.764547 GGCGCCTACTCCTCCCTT 60.765 66.667 22.15 0.00 0.00 3.95
444 445 2.911928 GCCTACTCCTCCCTTGGC 59.088 66.667 0.00 0.00 0.00 4.52
445 446 2.747443 GCCTACTCCTCCCTTGGCC 61.747 68.421 0.00 0.00 34.81 5.36
446 447 1.003573 CCTACTCCTCCCTTGGCCT 59.996 63.158 3.32 0.00 0.00 5.19
447 448 1.341156 CCTACTCCTCCCTTGGCCTG 61.341 65.000 3.32 0.00 0.00 4.85
448 449 1.977293 CTACTCCTCCCTTGGCCTGC 61.977 65.000 3.32 0.00 0.00 4.85
449 450 4.120755 CTCCTCCCTTGGCCTGCC 62.121 72.222 3.32 0.00 0.00 4.85
469 470 4.858680 TCGGCGGCACAACCACAA 62.859 61.111 10.53 0.00 39.03 3.33
470 471 3.669344 CGGCGGCACAACCACAAT 61.669 61.111 10.53 0.00 39.03 2.71
471 472 2.258286 GGCGGCACAACCACAATC 59.742 61.111 3.07 0.00 39.03 2.67
472 473 2.560119 GGCGGCACAACCACAATCA 61.560 57.895 3.07 0.00 39.03 2.57
473 474 1.586028 GCGGCACAACCACAATCAT 59.414 52.632 0.00 0.00 39.03 2.45
475 476 1.605202 GCGGCACAACCACAATCATTT 60.605 47.619 0.00 0.00 39.03 2.32
476 477 2.327568 CGGCACAACCACAATCATTTC 58.672 47.619 0.00 0.00 39.03 2.17
478 479 2.612721 GGCACAACCACAATCATTTCCC 60.613 50.000 0.00 0.00 38.86 3.97
479 480 2.612721 GCACAACCACAATCATTTCCCC 60.613 50.000 0.00 0.00 0.00 4.81
480 481 2.028203 CACAACCACAATCATTTCCCCC 60.028 50.000 0.00 0.00 0.00 5.40
496 497 0.396435 CCCCCACTTTCCCAAAAAGC 59.604 55.000 0.00 0.00 0.00 3.51
497 498 1.423584 CCCCACTTTCCCAAAAAGCT 58.576 50.000 0.00 0.00 0.00 3.74
498 499 1.344438 CCCCACTTTCCCAAAAAGCTC 59.656 52.381 0.00 0.00 0.00 4.09
499 500 1.344438 CCCACTTTCCCAAAAAGCTCC 59.656 52.381 0.00 0.00 0.00 4.70
500 501 1.344438 CCACTTTCCCAAAAAGCTCCC 59.656 52.381 0.00 0.00 0.00 4.30
501 502 1.000274 CACTTTCCCAAAAAGCTCCCG 60.000 52.381 0.00 0.00 0.00 5.14
502 503 0.038251 CTTTCCCAAAAAGCTCCCGC 60.038 55.000 0.00 0.00 0.00 6.13
503 504 1.468506 TTTCCCAAAAAGCTCCCGCC 61.469 55.000 0.00 0.00 36.60 6.13
504 505 2.283173 CCCAAAAAGCTCCCGCCT 60.283 61.111 0.00 0.00 36.60 5.52
505 506 2.639327 CCCAAAAAGCTCCCGCCTG 61.639 63.158 0.00 0.00 36.60 4.85
506 507 2.259511 CAAAAAGCTCCCGCCTGC 59.740 61.111 0.00 0.00 36.60 4.85
508 509 1.973812 AAAAAGCTCCCGCCTGCTC 60.974 57.895 0.00 0.00 38.75 4.26
509 510 3.927481 AAAAGCTCCCGCCTGCTCC 62.927 63.158 0.00 0.00 38.75 4.70
536 537 3.499737 CCGCTTGCCATGGACGAC 61.500 66.667 18.40 0.00 0.00 4.34
537 538 3.853330 CGCTTGCCATGGACGACG 61.853 66.667 18.40 9.67 0.00 5.12
540 541 3.027170 CTTGCCATGGACGACGTGC 62.027 63.158 18.40 13.06 34.66 5.34
542 543 3.490759 GCCATGGACGACGTGCTG 61.491 66.667 18.40 14.70 34.66 4.41
544 545 2.094659 CCATGGACGACGTGCTGAC 61.095 63.158 20.39 0.00 34.66 3.51
545 546 2.094659 CATGGACGACGTGCTGACC 61.095 63.158 20.39 8.32 0.00 4.02
546 547 3.296709 ATGGACGACGTGCTGACCC 62.297 63.158 20.39 7.59 0.00 4.46
547 548 3.681835 GGACGACGTGCTGACCCT 61.682 66.667 12.67 0.00 0.00 4.34
548 549 2.126424 GACGACGTGCTGACCCTC 60.126 66.667 4.58 0.00 0.00 4.30
549 550 3.948086 GACGACGTGCTGACCCTCG 62.948 68.421 4.58 0.00 0.00 4.63
550 551 3.733960 CGACGTGCTGACCCTCGA 61.734 66.667 0.00 0.00 0.00 4.04
552 553 3.948086 GACGTGCTGACCCTCGACG 62.948 68.421 0.00 0.00 36.14 5.12
575 576 3.855853 GCCTCCCTCGCCTCCTTC 61.856 72.222 0.00 0.00 0.00 3.46
576 577 3.532155 CCTCCCTCGCCTCCTTCG 61.532 72.222 0.00 0.00 0.00 3.79
577 578 3.532155 CTCCCTCGCCTCCTTCGG 61.532 72.222 0.00 0.00 0.00 4.30
584 585 4.475135 GCCTCCTTCGGCCTCACC 62.475 72.222 0.00 0.00 44.41 4.02
585 586 2.685380 CCTCCTTCGGCCTCACCT 60.685 66.667 0.00 0.00 35.61 4.00
586 587 2.726351 CCTCCTTCGGCCTCACCTC 61.726 68.421 0.00 0.00 35.61 3.85
588 589 4.148825 CCTTCGGCCTCACCTCCG 62.149 72.222 0.00 0.00 46.52 4.63
589 590 3.382832 CTTCGGCCTCACCTCCGT 61.383 66.667 0.00 0.00 45.44 4.69
590 591 3.358076 CTTCGGCCTCACCTCCGTC 62.358 68.421 0.00 0.00 45.44 4.79
595 596 3.691342 CCTCACCTCCGTCGCCAA 61.691 66.667 0.00 0.00 0.00 4.52
598 599 2.742372 CACCTCCGTCGCCAAAGG 60.742 66.667 0.00 0.00 34.94 3.11
2611 3935 3.463944 AGTTTCACGAGGAAATGACGTT 58.536 40.909 9.51 0.00 46.55 3.99
2656 3981 0.252103 TTCTGCTTCGGTAGACCCCT 60.252 55.000 0.00 0.00 36.46 4.79
3095 4421 3.802722 TTTTTACGCCATGCATTTTGC 57.197 38.095 0.00 0.00 45.29 3.68
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 6.205784 CACACCGAATTTGAAATGTGTAAGT 58.794 36.000 10.81 0.00 35.36 2.24
16 17 5.116983 GCACACCGAATTTGAAATGTGTAAG 59.883 40.000 18.34 3.74 39.65 2.34
19 20 3.181482 TGCACACCGAATTTGAAATGTGT 60.181 39.130 18.34 8.11 39.65 3.72
21 22 3.724508 TGCACACCGAATTTGAAATGT 57.275 38.095 0.00 0.00 0.00 2.71
22 23 3.989167 ACATGCACACCGAATTTGAAATG 59.011 39.130 0.00 0.00 0.00 2.32
23 24 4.255833 ACATGCACACCGAATTTGAAAT 57.744 36.364 0.00 0.00 0.00 2.17
24 25 3.724508 ACATGCACACCGAATTTGAAA 57.275 38.095 0.00 0.00 0.00 2.69
25 26 3.724508 AACATGCACACCGAATTTGAA 57.275 38.095 0.00 0.00 0.00 2.69
27 28 3.182173 GTCAAACATGCACACCGAATTTG 59.818 43.478 0.00 0.00 0.00 2.32
28 29 3.181482 TGTCAAACATGCACACCGAATTT 60.181 39.130 0.00 0.00 0.00 1.82
29 30 2.360483 TGTCAAACATGCACACCGAATT 59.640 40.909 0.00 0.00 0.00 2.17
32 33 0.660488 GTGTCAAACATGCACACCGA 59.340 50.000 0.00 0.00 35.38 4.69
33 34 0.380024 TGTGTCAAACATGCACACCG 59.620 50.000 12.67 0.00 39.83 4.94
34 35 3.490590 TGAATGTGTCAAACATGCACACC 60.491 43.478 12.67 6.55 46.23 4.16
35 36 3.704512 TGAATGTGTCAAACATGCACAC 58.295 40.909 5.40 7.77 46.23 3.82
42 43 2.358582 CAGGCTGTGAATGTGTCAAACA 59.641 45.455 6.28 0.00 44.79 2.83
43 44 2.618241 TCAGGCTGTGAATGTGTCAAAC 59.382 45.455 15.27 0.00 38.23 2.93
44 45 2.618241 GTCAGGCTGTGAATGTGTCAAA 59.382 45.455 15.27 0.00 38.23 2.69
45 46 2.221169 GTCAGGCTGTGAATGTGTCAA 58.779 47.619 15.27 0.00 38.23 3.18
46 47 1.873486 CGTCAGGCTGTGAATGTGTCA 60.873 52.381 15.27 0.00 36.74 3.58
47 48 0.792640 CGTCAGGCTGTGAATGTGTC 59.207 55.000 15.27 0.00 36.74 3.67
48 49 0.106708 ACGTCAGGCTGTGAATGTGT 59.893 50.000 15.27 1.23 36.74 3.72
49 50 0.514255 CACGTCAGGCTGTGAATGTG 59.486 55.000 15.27 12.90 36.74 3.21
50 51 0.106708 ACACGTCAGGCTGTGAATGT 59.893 50.000 15.27 11.78 39.38 2.71
51 52 0.792640 GACACGTCAGGCTGTGAATG 59.207 55.000 15.27 11.17 39.38 2.67
52 53 0.681733 AGACACGTCAGGCTGTGAAT 59.318 50.000 15.27 2.65 39.38 2.57
53 54 0.464036 AAGACACGTCAGGCTGTGAA 59.536 50.000 15.27 0.00 39.38 3.18
54 55 0.464036 AAAGACACGTCAGGCTGTGA 59.536 50.000 15.27 0.00 39.38 3.58
56 57 2.038387 AAAAAGACACGTCAGGCTGT 57.962 45.000 15.27 0.00 0.00 4.40
73 74 4.016444 AGTCCACAGCACAAGAAGAAAAA 58.984 39.130 0.00 0.00 0.00 1.94
74 75 3.378112 CAGTCCACAGCACAAGAAGAAAA 59.622 43.478 0.00 0.00 0.00 2.29
77 78 1.762370 TCAGTCCACAGCACAAGAAGA 59.238 47.619 0.00 0.00 0.00 2.87
78 79 2.245159 TCAGTCCACAGCACAAGAAG 57.755 50.000 0.00 0.00 0.00 2.85
79 80 2.708216 TTCAGTCCACAGCACAAGAA 57.292 45.000 0.00 0.00 0.00 2.52
80 81 2.936919 ATTCAGTCCACAGCACAAGA 57.063 45.000 0.00 0.00 0.00 3.02
81 82 3.996150 AAATTCAGTCCACAGCACAAG 57.004 42.857 0.00 0.00 0.00 3.16
83 84 3.286353 TCAAAATTCAGTCCACAGCACA 58.714 40.909 0.00 0.00 0.00 4.57
84 85 3.988379 TCAAAATTCAGTCCACAGCAC 57.012 42.857 0.00 0.00 0.00 4.40
85 86 4.998671 TTTCAAAATTCAGTCCACAGCA 57.001 36.364 0.00 0.00 0.00 4.41
86 87 4.687483 CCATTTCAAAATTCAGTCCACAGC 59.313 41.667 0.00 0.00 0.00 4.40
87 88 4.687483 GCCATTTCAAAATTCAGTCCACAG 59.313 41.667 0.00 0.00 0.00 3.66
88 89 4.100653 TGCCATTTCAAAATTCAGTCCACA 59.899 37.500 0.00 0.00 0.00 4.17
89 90 4.630111 TGCCATTTCAAAATTCAGTCCAC 58.370 39.130 0.00 0.00 0.00 4.02
90 91 4.952071 TGCCATTTCAAAATTCAGTCCA 57.048 36.364 0.00 0.00 0.00 4.02
91 92 6.806388 AATTGCCATTTCAAAATTCAGTCC 57.194 33.333 0.00 0.00 0.00 3.85
103 104 3.244976 CCACGTCAGAAATTGCCATTTC 58.755 45.455 13.93 13.93 46.20 2.17
104 105 2.627699 ACCACGTCAGAAATTGCCATTT 59.372 40.909 0.00 0.00 35.12 2.32
105 106 2.030007 CACCACGTCAGAAATTGCCATT 60.030 45.455 0.00 0.00 0.00 3.16
106 107 1.541147 CACCACGTCAGAAATTGCCAT 59.459 47.619 0.00 0.00 0.00 4.40
107 108 0.950836 CACCACGTCAGAAATTGCCA 59.049 50.000 0.00 0.00 0.00 4.92
108 109 1.234821 TCACCACGTCAGAAATTGCC 58.765 50.000 0.00 0.00 0.00 4.52
110 111 4.667262 TGTTTTCACCACGTCAGAAATTG 58.333 39.130 7.23 0.00 32.00 2.32
111 112 4.974368 TGTTTTCACCACGTCAGAAATT 57.026 36.364 7.23 0.00 32.00 1.82
112 113 4.821805 AGATGTTTTCACCACGTCAGAAAT 59.178 37.500 7.23 0.00 33.25 2.17
113 114 4.196193 AGATGTTTTCACCACGTCAGAAA 58.804 39.130 3.28 3.28 33.25 2.52
114 115 3.804036 AGATGTTTTCACCACGTCAGAA 58.196 40.909 0.00 0.00 33.25 3.02
118 119 3.963383 ACAAGATGTTTTCACCACGTC 57.037 42.857 0.00 0.00 0.00 4.34
119 120 7.499321 TTAATACAAGATGTTTTCACCACGT 57.501 32.000 0.00 0.00 0.00 4.49
120 121 8.020819 ACATTAATACAAGATGTTTTCACCACG 58.979 33.333 0.00 0.00 30.22 4.94
121 122 9.691362 AACATTAATACAAGATGTTTTCACCAC 57.309 29.630 0.00 0.00 40.11 4.16
122 123 9.689976 CAACATTAATACAAGATGTTTTCACCA 57.310 29.630 0.00 0.00 40.84 4.17
155 156 9.717942 TGCATGCCTTTAATTATTACAGTTTTT 57.282 25.926 16.68 0.00 0.00 1.94
159 160 8.355169 CAGATGCATGCCTTTAATTATTACAGT 58.645 33.333 16.68 0.00 0.00 3.55
160 161 7.811236 CCAGATGCATGCCTTTAATTATTACAG 59.189 37.037 16.68 0.00 0.00 2.74
161 162 7.287466 ACCAGATGCATGCCTTTAATTATTACA 59.713 33.333 16.68 0.00 0.00 2.41
162 163 7.661040 ACCAGATGCATGCCTTTAATTATTAC 58.339 34.615 16.68 0.00 0.00 1.89
163 164 7.725397 AGACCAGATGCATGCCTTTAATTATTA 59.275 33.333 16.68 0.00 0.00 0.98
165 166 6.015688 CAGACCAGATGCATGCCTTTAATTAT 60.016 38.462 16.68 0.00 0.00 1.28
166 167 5.300034 CAGACCAGATGCATGCCTTTAATTA 59.700 40.000 16.68 0.00 0.00 1.40
168 169 3.635373 CAGACCAGATGCATGCCTTTAAT 59.365 43.478 16.68 0.26 0.00 1.40
169 170 3.018856 CAGACCAGATGCATGCCTTTAA 58.981 45.455 16.68 0.00 0.00 1.52
170 171 2.239402 TCAGACCAGATGCATGCCTTTA 59.761 45.455 16.68 0.00 0.00 1.85
171 172 1.005097 TCAGACCAGATGCATGCCTTT 59.995 47.619 16.68 0.00 0.00 3.11
173 174 0.622136 TTCAGACCAGATGCATGCCT 59.378 50.000 16.68 4.84 0.00 4.75
174 175 0.737219 GTTCAGACCAGATGCATGCC 59.263 55.000 16.68 0.00 0.00 4.40
175 176 1.456296 TGTTCAGACCAGATGCATGC 58.544 50.000 11.82 11.82 0.00 4.06
176 177 3.181490 CCAATGTTCAGACCAGATGCATG 60.181 47.826 2.46 0.00 0.00 4.06
177 178 3.021695 CCAATGTTCAGACCAGATGCAT 58.978 45.455 0.00 0.00 0.00 3.96
178 179 2.224843 ACCAATGTTCAGACCAGATGCA 60.225 45.455 0.00 0.00 0.00 3.96
179 180 2.163010 CACCAATGTTCAGACCAGATGC 59.837 50.000 0.00 0.00 0.00 3.91
183 184 2.849942 TCACACCAATGTTCAGACCAG 58.150 47.619 0.00 0.00 36.72 4.00
184 185 3.507162 ATCACACCAATGTTCAGACCA 57.493 42.857 0.00 0.00 36.72 4.02
185 186 3.120199 CGAATCACACCAATGTTCAGACC 60.120 47.826 0.00 0.00 36.72 3.85
186 187 3.745975 TCGAATCACACCAATGTTCAGAC 59.254 43.478 0.00 0.00 36.72 3.51
187 188 4.001618 TCGAATCACACCAATGTTCAGA 57.998 40.909 0.00 0.00 36.72 3.27
189 190 3.058293 GCTTCGAATCACACCAATGTTCA 60.058 43.478 0.00 0.00 36.72 3.18
191 192 2.228822 GGCTTCGAATCACACCAATGTT 59.771 45.455 0.00 0.00 36.72 2.71
192 193 1.812571 GGCTTCGAATCACACCAATGT 59.187 47.619 0.00 0.00 40.80 2.71
194 195 1.086696 CGGCTTCGAATCACACCAAT 58.913 50.000 0.00 0.00 35.61 3.16
196 197 0.250124 AACGGCTTCGAATCACACCA 60.250 50.000 0.00 0.00 37.63 4.17
199 200 1.872388 TTGAACGGCTTCGAATCACA 58.128 45.000 0.00 0.00 34.83 3.58
200 201 3.471495 AATTGAACGGCTTCGAATCAC 57.529 42.857 0.00 0.00 34.83 3.06
202 203 4.554973 CAGAAAATTGAACGGCTTCGAATC 59.445 41.667 0.00 0.00 37.63 2.52
203 204 4.475944 CAGAAAATTGAACGGCTTCGAAT 58.524 39.130 0.00 0.00 37.63 3.34
204 205 3.304391 CCAGAAAATTGAACGGCTTCGAA 60.304 43.478 0.00 0.00 37.63 3.71
205 206 2.225491 CCAGAAAATTGAACGGCTTCGA 59.775 45.455 0.00 0.00 37.63 3.71
206 207 2.031157 ACCAGAAAATTGAACGGCTTCG 60.031 45.455 0.00 0.00 40.22 3.79
207 208 3.643159 ACCAGAAAATTGAACGGCTTC 57.357 42.857 0.00 0.00 0.00 3.86
208 209 3.492482 CCAACCAGAAAATTGAACGGCTT 60.492 43.478 0.00 0.00 0.00 4.35
209 210 2.035832 CCAACCAGAAAATTGAACGGCT 59.964 45.455 0.00 0.00 0.00 5.52
210 211 2.223947 ACCAACCAGAAAATTGAACGGC 60.224 45.455 0.00 0.00 0.00 5.68
211 212 3.380142 CACCAACCAGAAAATTGAACGG 58.620 45.455 0.00 0.00 0.00 4.44
212 213 2.794350 GCACCAACCAGAAAATTGAACG 59.206 45.455 0.00 0.00 0.00 3.95
213 214 2.794350 CGCACCAACCAGAAAATTGAAC 59.206 45.455 0.00 0.00 0.00 3.18
214 215 2.690497 TCGCACCAACCAGAAAATTGAA 59.310 40.909 0.00 0.00 0.00 2.69
215 216 2.302260 TCGCACCAACCAGAAAATTGA 58.698 42.857 0.00 0.00 0.00 2.57
216 217 2.791383 TCGCACCAACCAGAAAATTG 57.209 45.000 0.00 0.00 0.00 2.32
217 218 4.079253 AGTATCGCACCAACCAGAAAATT 58.921 39.130 0.00 0.00 0.00 1.82
218 219 3.686016 AGTATCGCACCAACCAGAAAAT 58.314 40.909 0.00 0.00 0.00 1.82
219 220 3.134574 AGTATCGCACCAACCAGAAAA 57.865 42.857 0.00 0.00 0.00 2.29
220 221 2.851263 AGTATCGCACCAACCAGAAA 57.149 45.000 0.00 0.00 0.00 2.52
221 222 3.512329 TCTTAGTATCGCACCAACCAGAA 59.488 43.478 0.00 0.00 0.00 3.02
225 226 2.202566 GCTCTTAGTATCGCACCAACC 58.797 52.381 0.00 0.00 0.00 3.77
226 227 2.888594 TGCTCTTAGTATCGCACCAAC 58.111 47.619 0.00 0.00 0.00 3.77
227 228 3.056107 AGTTGCTCTTAGTATCGCACCAA 60.056 43.478 0.00 0.00 31.24 3.67
231 232 2.758423 TGGAGTTGCTCTTAGTATCGCA 59.242 45.455 0.00 0.00 0.00 5.10
232 233 3.438297 TGGAGTTGCTCTTAGTATCGC 57.562 47.619 0.00 0.00 0.00 4.58
233 234 4.210120 GCATTGGAGTTGCTCTTAGTATCG 59.790 45.833 0.00 0.00 37.14 2.92
234 235 4.210120 CGCATTGGAGTTGCTCTTAGTATC 59.790 45.833 0.00 0.00 37.96 2.24
235 236 4.122776 CGCATTGGAGTTGCTCTTAGTAT 58.877 43.478 0.00 0.00 37.96 2.12
236 237 3.521560 CGCATTGGAGTTGCTCTTAGTA 58.478 45.455 0.00 0.00 37.96 1.82
238 239 1.667724 CCGCATTGGAGTTGCTCTTAG 59.332 52.381 0.00 0.00 42.00 2.18
239 240 1.737838 CCGCATTGGAGTTGCTCTTA 58.262 50.000 0.00 0.00 42.00 2.10
241 242 2.042831 GCCGCATTGGAGTTGCTCT 61.043 57.895 0.00 0.00 42.00 4.09
242 243 2.486966 GCCGCATTGGAGTTGCTC 59.513 61.111 0.00 0.00 42.00 4.26
243 244 3.434319 CGCCGCATTGGAGTTGCT 61.434 61.111 0.00 0.00 42.00 3.91
244 245 3.430862 TCGCCGCATTGGAGTTGC 61.431 61.111 0.00 0.00 42.00 4.17
245 246 2.480555 GTCGCCGCATTGGAGTTG 59.519 61.111 0.00 0.00 42.00 3.16
246 247 1.895020 TAGGTCGCCGCATTGGAGTT 61.895 55.000 0.00 0.00 42.00 3.01
247 248 1.686325 ATAGGTCGCCGCATTGGAGT 61.686 55.000 0.00 0.00 42.00 3.85
248 249 0.532862 AATAGGTCGCCGCATTGGAG 60.533 55.000 0.00 0.00 42.00 3.86
249 250 0.107410 AAATAGGTCGCCGCATTGGA 60.107 50.000 0.00 0.00 42.00 3.53
250 251 0.307760 GAAATAGGTCGCCGCATTGG 59.692 55.000 0.00 0.00 42.50 3.16
251 252 0.042188 CGAAATAGGTCGCCGCATTG 60.042 55.000 0.00 0.00 33.66 2.82
252 253 0.461339 ACGAAATAGGTCGCCGCATT 60.461 50.000 0.00 0.00 45.00 3.56
253 254 0.874607 GACGAAATAGGTCGCCGCAT 60.875 55.000 0.00 0.00 45.00 4.73
254 255 1.517694 GACGAAATAGGTCGCCGCA 60.518 57.895 0.00 0.00 45.00 5.69
255 256 2.235699 GGACGAAATAGGTCGCCGC 61.236 63.158 0.00 0.00 45.00 6.53
256 257 1.942712 CGGACGAAATAGGTCGCCG 60.943 63.158 13.13 13.13 46.21 6.46
257 258 2.235699 GCGGACGAAATAGGTCGCC 61.236 63.158 0.00 0.00 45.00 5.54
258 259 1.517694 TGCGGACGAAATAGGTCGC 60.518 57.895 0.00 0.00 45.00 5.19
259 260 2.285154 GTGCGGACGAAATAGGTCG 58.715 57.895 0.00 0.00 46.54 4.79
271 272 2.968156 CCAAACGAACCGTGCGGA 60.968 61.111 18.16 0.00 39.99 5.54
273 274 3.231324 GACCCAAACGAACCGTGCG 62.231 63.158 0.00 0.00 39.99 5.34
274 275 1.716826 TTGACCCAAACGAACCGTGC 61.717 55.000 0.00 0.00 39.99 5.34
275 276 0.733729 TTTGACCCAAACGAACCGTG 59.266 50.000 0.00 0.00 39.99 4.94
277 278 1.402613 AGTTTTGACCCAAACGAACCG 59.597 47.619 0.00 0.00 32.79 4.44
278 279 2.424246 TCAGTTTTGACCCAAACGAACC 59.576 45.455 0.00 0.00 32.79 3.62
279 280 3.431856 GTCAGTTTTGACCCAAACGAAC 58.568 45.455 0.00 0.00 46.47 3.95
280 281 3.768468 GTCAGTTTTGACCCAAACGAA 57.232 42.857 0.00 0.00 46.47 3.85
290 291 3.426963 GCCGACTTTTGTGTCAGTTTTGA 60.427 43.478 0.00 0.00 36.82 2.69
291 292 2.851824 GCCGACTTTTGTGTCAGTTTTG 59.148 45.455 0.00 0.00 36.82 2.44
293 294 1.404035 GGCCGACTTTTGTGTCAGTTT 59.596 47.619 0.00 0.00 36.82 2.66
294 295 1.021968 GGCCGACTTTTGTGTCAGTT 58.978 50.000 0.00 0.00 36.82 3.16
300 301 0.667184 GCATTGGGCCGACTTTTGTG 60.667 55.000 0.00 0.00 36.11 3.33
301 302 1.112315 TGCATTGGGCCGACTTTTGT 61.112 50.000 0.00 0.00 43.89 2.83
302 303 0.247185 ATGCATTGGGCCGACTTTTG 59.753 50.000 0.00 0.00 43.89 2.44
304 305 1.656818 CGATGCATTGGGCCGACTTT 61.657 55.000 5.98 0.00 43.89 2.66
306 307 2.514592 CGATGCATTGGGCCGACT 60.515 61.111 5.98 0.00 43.89 4.18
307 308 2.513666 TCGATGCATTGGGCCGAC 60.514 61.111 14.12 0.00 43.89 4.79
308 309 2.513666 GTCGATGCATTGGGCCGA 60.514 61.111 14.12 8.65 43.89 5.54
310 311 3.219198 GGGTCGATGCATTGGGCC 61.219 66.667 14.12 13.24 43.89 5.80
311 312 1.603236 TTTGGGTCGATGCATTGGGC 61.603 55.000 14.12 4.46 45.13 5.36
313 314 0.179166 CGTTTGGGTCGATGCATTGG 60.179 55.000 14.12 3.25 0.00 3.16
314 315 0.801872 TCGTTTGGGTCGATGCATTG 59.198 50.000 7.70 7.70 32.30 2.82
316 317 0.802494 GTTCGTTTGGGTCGATGCAT 59.198 50.000 0.00 0.00 37.18 3.96
317 318 0.533085 TGTTCGTTTGGGTCGATGCA 60.533 50.000 0.00 0.00 37.18 3.96
318 319 0.802494 ATGTTCGTTTGGGTCGATGC 59.198 50.000 0.00 0.00 37.18 3.91
319 320 1.804151 ACATGTTCGTTTGGGTCGATG 59.196 47.619 0.00 0.00 37.18 3.84
320 321 1.804151 CACATGTTCGTTTGGGTCGAT 59.196 47.619 0.00 0.00 37.18 3.59
321 322 1.222300 CACATGTTCGTTTGGGTCGA 58.778 50.000 0.00 0.00 35.50 4.20
324 325 3.157932 CAAACACATGTTCGTTTGGGT 57.842 42.857 24.07 4.97 45.23 4.51
329 330 3.545873 CGAAAAGCAAACACATGTTCGTT 59.454 39.130 0.00 0.00 37.25 3.85
330 331 3.105203 CGAAAAGCAAACACATGTTCGT 58.895 40.909 0.00 0.00 37.25 3.85
331 332 3.105203 ACGAAAAGCAAACACATGTTCG 58.895 40.909 0.00 2.08 41.46 3.95
332 333 4.316377 CGAACGAAAAGCAAACACATGTTC 60.316 41.667 0.00 0.00 37.25 3.18
335 336 2.097925 GCGAACGAAAAGCAAACACATG 60.098 45.455 0.00 0.00 0.00 3.21
336 337 2.116366 GCGAACGAAAAGCAAACACAT 58.884 42.857 0.00 0.00 0.00 3.21
337 338 1.131504 AGCGAACGAAAAGCAAACACA 59.868 42.857 0.00 0.00 0.00 3.72
338 339 1.822581 AGCGAACGAAAAGCAAACAC 58.177 45.000 0.00 0.00 0.00 3.32
339 340 2.181205 CAAGCGAACGAAAAGCAAACA 58.819 42.857 0.00 0.00 0.00 2.83
340 341 1.072154 GCAAGCGAACGAAAAGCAAAC 60.072 47.619 0.00 0.00 0.00 2.93
341 342 1.196200 GCAAGCGAACGAAAAGCAAA 58.804 45.000 0.00 0.00 0.00 3.68
343 344 1.008995 GGCAAGCGAACGAAAAGCA 60.009 52.632 0.00 0.00 0.00 3.91
345 346 0.721483 GTCGGCAAGCGAACGAAAAG 60.721 55.000 0.00 0.00 38.46 2.27
346 347 1.277440 GTCGGCAAGCGAACGAAAA 59.723 52.632 0.00 0.00 38.46 2.29
347 348 2.600475 GGTCGGCAAGCGAACGAAA 61.600 57.895 0.00 0.00 38.46 3.46
348 349 3.039588 GGTCGGCAAGCGAACGAA 61.040 61.111 0.00 0.00 38.46 3.85
351 352 2.253414 GAATGGGTCGGCAAGCGAAC 62.253 60.000 0.00 0.00 0.00 3.95
352 353 2.033448 AATGGGTCGGCAAGCGAA 59.967 55.556 0.00 0.00 0.00 4.70
353 354 2.435938 GAATGGGTCGGCAAGCGA 60.436 61.111 0.00 0.00 0.00 4.93
354 355 3.508840 GGAATGGGTCGGCAAGCG 61.509 66.667 0.00 0.00 0.00 4.68
356 357 1.750399 CTGGGAATGGGTCGGCAAG 60.750 63.158 0.00 0.00 0.00 4.01
357 358 2.354729 CTGGGAATGGGTCGGCAA 59.645 61.111 0.00 0.00 0.00 4.52
358 359 4.424711 GCTGGGAATGGGTCGGCA 62.425 66.667 0.00 0.00 0.00 5.69
359 360 4.115199 AGCTGGGAATGGGTCGGC 62.115 66.667 0.00 0.00 0.00 5.54
360 361 2.190578 GAGCTGGGAATGGGTCGG 59.809 66.667 0.00 0.00 0.00 4.79
362 363 1.177401 GTTTGAGCTGGGAATGGGTC 58.823 55.000 0.00 0.00 0.00 4.46
363 364 0.251787 GGTTTGAGCTGGGAATGGGT 60.252 55.000 0.00 0.00 0.00 4.51
364 365 0.251742 TGGTTTGAGCTGGGAATGGG 60.252 55.000 0.00 0.00 0.00 4.00
365 366 1.180029 CTGGTTTGAGCTGGGAATGG 58.820 55.000 0.00 0.00 0.00 3.16
366 367 2.205022 TCTGGTTTGAGCTGGGAATG 57.795 50.000 0.00 0.00 0.00 2.67
367 368 3.463048 AATCTGGTTTGAGCTGGGAAT 57.537 42.857 0.00 0.00 0.00 3.01
368 369 2.978156 AATCTGGTTTGAGCTGGGAA 57.022 45.000 0.00 0.00 0.00 3.97
369 370 2.978156 AAATCTGGTTTGAGCTGGGA 57.022 45.000 0.00 0.00 0.00 4.37
371 372 3.074412 ACGTAAATCTGGTTTGAGCTGG 58.926 45.455 0.00 0.00 0.00 4.85
373 374 3.074412 CCACGTAAATCTGGTTTGAGCT 58.926 45.455 0.00 0.00 0.00 4.09
374 375 2.161609 CCCACGTAAATCTGGTTTGAGC 59.838 50.000 0.00 0.00 0.00 4.26
375 376 2.161609 GCCCACGTAAATCTGGTTTGAG 59.838 50.000 0.00 0.00 0.00 3.02
376 377 2.156098 GCCCACGTAAATCTGGTTTGA 58.844 47.619 0.00 0.00 0.00 2.69
377 378 1.135803 CGCCCACGTAAATCTGGTTTG 60.136 52.381 0.00 0.00 33.53 2.93
378 379 1.161843 CGCCCACGTAAATCTGGTTT 58.838 50.000 0.00 0.00 33.53 3.27
379 380 1.303091 GCGCCCACGTAAATCTGGTT 61.303 55.000 0.00 0.00 42.83 3.67
381 382 2.808958 CGCGCCCACGTAAATCTGG 61.809 63.158 0.00 0.00 42.83 3.86
383 384 2.510691 CCGCGCCCACGTAAATCT 60.511 61.111 0.00 0.00 42.83 2.40
406 407 3.773630 CATCACGCGCGTCCGTTT 61.774 61.111 35.61 13.15 39.83 3.60
417 418 2.279517 GAGTAGGCGCCCATCACG 60.280 66.667 26.15 0.00 0.00 4.35
418 419 2.109181 GGAGTAGGCGCCCATCAC 59.891 66.667 26.15 16.24 0.00 3.06
419 420 2.041922 AGGAGTAGGCGCCCATCA 60.042 61.111 26.15 2.56 34.94 3.07
420 421 2.737830 GAGGAGTAGGCGCCCATC 59.262 66.667 26.15 18.58 34.94 3.51
421 422 2.844839 GGAGGAGTAGGCGCCCAT 60.845 66.667 26.15 9.54 34.94 4.00
423 424 4.862823 AGGGAGGAGTAGGCGCCC 62.863 72.222 26.15 9.10 39.12 6.13
424 425 2.764547 AAGGGAGGAGTAGGCGCC 60.765 66.667 21.89 21.89 34.56 6.53
425 426 2.501610 CAAGGGAGGAGTAGGCGC 59.498 66.667 0.00 0.00 0.00 6.53
426 427 3.095347 GCCAAGGGAGGAGTAGGCG 62.095 68.421 0.00 0.00 31.88 5.52
427 428 2.747443 GGCCAAGGGAGGAGTAGGC 61.747 68.421 0.00 0.00 41.29 3.93
428 429 1.003573 AGGCCAAGGGAGGAGTAGG 59.996 63.158 5.01 0.00 0.00 3.18
429 430 1.977293 GCAGGCCAAGGGAGGAGTAG 61.977 65.000 5.01 0.00 0.00 2.57
430 431 1.995626 GCAGGCCAAGGGAGGAGTA 60.996 63.158 5.01 0.00 0.00 2.59
431 432 3.334054 GCAGGCCAAGGGAGGAGT 61.334 66.667 5.01 0.00 0.00 3.85
432 433 4.120755 GGCAGGCCAAGGGAGGAG 62.121 72.222 5.01 0.00 35.81 3.69
436 437 3.650950 GACTGGCAGGCCAAGGGA 61.651 66.667 20.34 0.00 46.63 4.20
454 455 1.876497 ATGATTGTGGTTGTGCCGCC 61.876 55.000 0.00 0.00 46.96 6.13
456 457 2.327568 GAAATGATTGTGGTTGTGCCG 58.672 47.619 0.00 0.00 41.21 5.69
457 458 2.612721 GGGAAATGATTGTGGTTGTGCC 60.613 50.000 0.00 0.00 37.90 5.01
458 459 2.612721 GGGGAAATGATTGTGGTTGTGC 60.613 50.000 0.00 0.00 0.00 4.57
459 460 2.028203 GGGGGAAATGATTGTGGTTGTG 60.028 50.000 0.00 0.00 0.00 3.33
460 461 2.256306 GGGGGAAATGATTGTGGTTGT 58.744 47.619 0.00 0.00 0.00 3.32
478 479 1.344438 GAGCTTTTTGGGAAAGTGGGG 59.656 52.381 0.00 0.00 0.00 4.96
479 480 1.344438 GGAGCTTTTTGGGAAAGTGGG 59.656 52.381 0.00 0.00 0.00 4.61
480 481 1.344438 GGGAGCTTTTTGGGAAAGTGG 59.656 52.381 0.00 0.00 0.00 4.00
481 482 1.000274 CGGGAGCTTTTTGGGAAAGTG 60.000 52.381 0.00 0.00 0.00 3.16
482 483 1.328279 CGGGAGCTTTTTGGGAAAGT 58.672 50.000 0.00 0.00 0.00 2.66
519 520 3.499737 GTCGTCCATGGCAAGCGG 61.500 66.667 6.96 0.00 0.00 5.52
521 522 2.742372 ACGTCGTCCATGGCAAGC 60.742 61.111 6.96 0.00 0.00 4.01
522 523 3.027170 GCACGTCGTCCATGGCAAG 62.027 63.158 6.96 0.27 0.00 4.01
524 525 4.002506 AGCACGTCGTCCATGGCA 62.003 61.111 6.96 0.00 0.00 4.92
528 529 2.261671 GGTCAGCACGTCGTCCAT 59.738 61.111 0.00 0.00 0.00 3.41
529 530 3.986006 GGGTCAGCACGTCGTCCA 61.986 66.667 0.00 0.00 0.00 4.02
530 531 3.628280 GAGGGTCAGCACGTCGTCC 62.628 68.421 0.00 0.00 0.00 4.79
531 532 2.126424 GAGGGTCAGCACGTCGTC 60.126 66.667 0.00 0.00 0.00 4.20
532 533 4.039357 CGAGGGTCAGCACGTCGT 62.039 66.667 0.00 0.00 40.23 4.34
533 534 3.733960 TCGAGGGTCAGCACGTCG 61.734 66.667 0.00 0.00 44.71 5.12
534 535 2.126424 GTCGAGGGTCAGCACGTC 60.126 66.667 0.00 0.00 0.00 4.34
535 536 4.039357 CGTCGAGGGTCAGCACGT 62.039 66.667 0.00 0.00 0.00 4.49
558 559 3.855853 GAAGGAGGCGAGGGAGGC 61.856 72.222 0.00 0.00 0.00 4.70
559 560 3.532155 CGAAGGAGGCGAGGGAGG 61.532 72.222 0.00 0.00 0.00 4.30
578 579 3.234630 TTTGGCGACGGAGGTGAGG 62.235 63.158 0.00 0.00 0.00 3.86
579 580 1.738099 CTTTGGCGACGGAGGTGAG 60.738 63.158 0.00 0.00 0.00 3.51
580 581 2.342279 CTTTGGCGACGGAGGTGA 59.658 61.111 0.00 0.00 0.00 4.02
581 582 2.742372 CCTTTGGCGACGGAGGTG 60.742 66.667 1.64 0.00 32.14 4.00
2656 3981 1.504359 CGAGCCGTCCTTGTGTTTAA 58.496 50.000 0.00 0.00 0.00 1.52
3095 4421 2.675348 GAGAAGTCGCTTTCCATGGAAG 59.325 50.000 25.69 19.95 35.38 3.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.