Multiple sequence alignment - TraesCS4D01G324500
Loading Multiple Alignment...
BLAST Results
BLAST Results - Input Sequence
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this
to extract flanking regions for cloning. If the result of the multiple sequence alignment is
not as expected, these results could be used for further investigation.
qseqid
sseqid
percentage.identical
alignment.length
no.mismatch
no.gap.openings
qstart
qend
sstart
send
evalue
bitscore
0
TraesCS4D01G324500
chr4D
100.000
2302
0
0
916
3217
485065562
485063261
0.000000e+00
4252.0
1
TraesCS4D01G324500
chr4D
99.696
2301
6
1
916
3215
485043619
485041319
0.000000e+00
4209.0
2
TraesCS4D01G324500
chr4D
91.530
1464
102
12
919
2368
484952433
484950978
0.000000e+00
1997.0
3
TraesCS4D01G324500
chr4D
81.083
1570
208
39
916
2466
484927952
484926453
0.000000e+00
1171.0
4
TraesCS4D01G324500
chr4D
89.844
896
75
9
1486
2377
484929896
484929013
0.000000e+00
1136.0
5
TraesCS4D01G324500
chr4D
100.000
599
0
0
1
599
485066477
485065879
0.000000e+00
1107.0
6
TraesCS4D01G324500
chr4D
90.261
421
27
8
916
1325
484934512
484934095
3.650000e-149
538.0
7
TraesCS4D01G324500
chr4D
84.848
99
14
1
2630
2728
473975827
473975924
7.340000e-17
99.0
8
TraesCS4D01G324500
chr5A
93.980
1578
67
8
950
2523
666117233
666115680
0.000000e+00
2362.0
9
TraesCS4D01G324500
chr5A
90.392
791
70
4
1468
2257
666073533
666072748
0.000000e+00
1035.0
10
TraesCS4D01G324500
chr5A
92.034
590
39
5
2629
3215
749100
749684
0.000000e+00
822.0
11
TraesCS4D01G324500
chr5A
85.984
371
43
5
957
1321
666074004
666073637
3.890000e-104
388.0
12
TraesCS4D01G324500
chr4B
95.726
1170
45
3
1465
2630
618251542
618250374
0.000000e+00
1879.0
13
TraesCS4D01G324500
chr4B
80.102
1573
215
37
916
2466
618227673
618226177
0.000000e+00
1081.0
14
TraesCS4D01G324500
chr4B
94.363
479
16
5
916
1393
618252284
618251816
0.000000e+00
725.0
15
TraesCS4D01G324500
chr4B
90.909
407
23
8
916
1310
618241641
618241237
4.720000e-148
534.0
16
TraesCS4D01G324500
chr4B
90.756
119
8
2
2
117
618260679
618260561
4.300000e-34
156.0
17
TraesCS4D01G324500
chr4B
82.270
141
13
6
109
237
618257217
618257077
9.430000e-21
111.0
18
TraesCS4D01G324500
chrUn
84.987
766
114
1
1493
2257
46203795
46204560
0.000000e+00
776.0
19
TraesCS4D01G324500
chrUn
89.216
102
8
3
2635
2734
352484393
352484493
1.210000e-24
124.0
20
TraesCS4D01G324500
chrUn
88.235
102
9
3
2635
2734
352502269
352502369
5.640000e-23
119.0
21
TraesCS4D01G324500
chrUn
79.856
139
24
4
234
370
356995555
356995691
7.340000e-17
99.0
22
TraesCS4D01G324500
chr3B
82.781
784
132
2
1476
2258
813902530
813903311
0.000000e+00
697.0
23
TraesCS4D01G324500
chr3B
81.022
137
22
3
236
370
808527216
808527082
4.390000e-19
106.0
24
TraesCS4D01G324500
chr3B
90.278
72
7
0
2665
2736
804386899
804386828
9.500000e-16
95.3
25
TraesCS4D01G324500
chr3B
77.698
139
27
4
234
370
431261876
431262012
7.400000e-12
82.4
26
TraesCS4D01G324500
chr3A
81.377
741
132
5
1483
2219
735976101
735975363
1.650000e-167
599.0
27
TraesCS4D01G324500
chr3A
94.030
67
4
0
1202
1268
701219133
701219067
5.680000e-18
102.0
28
TraesCS4D01G324500
chr7D
75.900
361
73
10
242
589
453288430
453288789
4.270000e-39
172.0
29
TraesCS4D01G324500
chr7B
90.588
85
7
1
2634
2717
66466104
66466188
9.430000e-21
111.0
30
TraesCS4D01G324500
chr3D
77.714
175
35
4
1096
1268
566080716
566080888
1.580000e-18
104.0
31
TraesCS4D01G324500
chr2A
77.717
184
21
15
2626
2790
677173609
677173791
9.500000e-16
95.3
32
TraesCS4D01G324500
chr1B
79.137
139
25
4
234
370
524349872
524349736
3.420000e-15
93.5
33
TraesCS4D01G324500
chr1B
92.105
38
2
1
230
266
432381159
432381122
6.000000e-03
52.8
34
TraesCS4D01G324500
chr7A
92.063
63
5
0
2673
2735
41790954
41790892
4.420000e-14
89.8
35
TraesCS4D01G324500
chr2D
82.857
70
11
1
304
373
476344224
476344156
9.640000e-06
62.1
BLAST Results - HSPs grouped
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the
BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are
purely upstream or downstream may be removed if they don't overlap both primers.
query
scaffold
start
end
length
rev.comp
avg.bitscore
max.bitscore
avg.percent.identical
query.start
query.end
num_hsp
groupid
homo_length
0
TraesCS4D01G324500
chr4D
485063261
485066477
3216
True
2679.5
4252
100.0000
1
3217
2
chr4D.!!$R5
3216
1
TraesCS4D01G324500
chr4D
485041319
485043619
2300
True
4209.0
4209
99.6960
916
3215
1
chr4D.!!$R3
2299
2
TraesCS4D01G324500
chr4D
484950978
484952433
1455
True
1997.0
1997
91.5300
919
2368
1
chr4D.!!$R2
1449
3
TraesCS4D01G324500
chr4D
484926453
484929896
3443
True
1153.5
1171
85.4635
916
2466
2
chr4D.!!$R4
1550
4
TraesCS4D01G324500
chr5A
666115680
666117233
1553
True
2362.0
2362
93.9800
950
2523
1
chr5A.!!$R1
1573
5
TraesCS4D01G324500
chr5A
749100
749684
584
False
822.0
822
92.0340
2629
3215
1
chr5A.!!$F1
586
6
TraesCS4D01G324500
chr5A
666072748
666074004
1256
True
711.5
1035
88.1880
957
2257
2
chr5A.!!$R2
1300
7
TraesCS4D01G324500
chr4B
618250374
618252284
1910
True
1302.0
1879
95.0445
916
2630
2
chr4B.!!$R3
1714
8
TraesCS4D01G324500
chr4B
618226177
618227673
1496
True
1081.0
1081
80.1020
916
2466
1
chr4B.!!$R1
1550
9
TraesCS4D01G324500
chrUn
46203795
46204560
765
False
776.0
776
84.9870
1493
2257
1
chrUn.!!$F1
764
10
TraesCS4D01G324500
chr3B
813902530
813903311
781
False
697.0
697
82.7810
1476
2258
1
chr3B.!!$F2
782
11
TraesCS4D01G324500
chr3A
735975363
735976101
738
True
599.0
599
81.3770
1483
2219
1
chr3A.!!$R2
736
AutoCloner calculated primer pairs
These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3),
whilst remaining within the specified product range where possible.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
502
503
0.038251
CTTTCCCAAAAAGCTCCCGC
60.038
55.0
0.0
0.0
0.0
6.13
F
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
2656
3981
1.504359
CGAGCCGTCCTTGTGTTTAA
58.496
50.0
0.0
0.0
0.0
1.52
R
All possible primers
Listed here are all possible primers based on the multiple sequence alignment and SNPs generated
previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work
during PCR or sequencing,
these could be used as alternatives.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
38
39
6.385649
ACTTACACATTTCAAATTCGGTGT
57.614
33.333
9.10
9.10
41.76
4.16
40
41
3.380142
ACACATTTCAAATTCGGTGTGC
58.620
40.909
4.37
0.00
40.27
4.57
41
42
3.181482
ACACATTTCAAATTCGGTGTGCA
60.181
39.130
4.37
0.00
40.27
4.57
42
43
3.989167
CACATTTCAAATTCGGTGTGCAT
59.011
39.130
0.00
0.00
31.83
3.96
43
44
3.989167
ACATTTCAAATTCGGTGTGCATG
59.011
39.130
0.00
0.00
0.00
4.06
44
45
3.724508
TTTCAAATTCGGTGTGCATGT
57.275
38.095
0.00
0.00
0.00
3.21
45
46
3.724508
TTCAAATTCGGTGTGCATGTT
57.275
38.095
0.00
0.00
0.00
2.71
46
47
3.724508
TCAAATTCGGTGTGCATGTTT
57.275
38.095
0.00
0.00
0.00
2.83
47
48
3.379240
TCAAATTCGGTGTGCATGTTTG
58.621
40.909
0.00
0.00
0.00
2.93
48
49
3.067320
TCAAATTCGGTGTGCATGTTTGA
59.933
39.130
0.00
0.00
33.30
2.69
49
50
2.704725
ATTCGGTGTGCATGTTTGAC
57.295
45.000
0.00
0.00
0.00
3.18
50
51
1.383523
TTCGGTGTGCATGTTTGACA
58.616
45.000
0.00
0.00
0.00
3.58
51
52
0.660488
TCGGTGTGCATGTTTGACAC
59.340
50.000
0.00
9.57
39.44
3.67
52
53
0.380024
CGGTGTGCATGTTTGACACA
59.620
50.000
16.18
9.43
41.50
3.72
54
55
2.543445
CGGTGTGCATGTTTGACACATT
60.543
45.455
16.18
0.00
44.40
2.71
56
57
3.490590
GGTGTGCATGTTTGACACATTCA
60.491
43.478
16.18
0.00
44.40
2.57
59
60
3.967401
TGCATGTTTGACACATTCACAG
58.033
40.909
0.00
0.00
44.40
3.66
60
61
2.727798
GCATGTTTGACACATTCACAGC
59.272
45.455
0.00
0.00
44.40
4.40
62
63
2.653726
TGTTTGACACATTCACAGCCT
58.346
42.857
0.00
0.00
32.26
4.58
65
66
1.882912
TGACACATTCACAGCCTGAC
58.117
50.000
0.00
0.00
0.00
3.51
67
68
0.106708
ACACATTCACAGCCTGACGT
59.893
50.000
0.00
0.00
0.00
4.34
68
69
0.514255
CACATTCACAGCCTGACGTG
59.486
55.000
0.00
0.00
34.34
4.49
69
70
0.106708
ACATTCACAGCCTGACGTGT
59.893
50.000
0.00
0.00
34.66
4.49
70
71
0.792640
CATTCACAGCCTGACGTGTC
59.207
55.000
0.00
0.00
34.66
3.67
71
72
0.681733
ATTCACAGCCTGACGTGTCT
59.318
50.000
0.00
0.00
34.66
3.41
72
73
0.464036
TTCACAGCCTGACGTGTCTT
59.536
50.000
0.00
0.00
34.66
3.01
73
74
0.464036
TCACAGCCTGACGTGTCTTT
59.536
50.000
0.00
0.00
34.66
2.52
74
75
1.134521
TCACAGCCTGACGTGTCTTTT
60.135
47.619
0.00
0.00
34.66
2.27
94
95
4.370364
TTTTTCTTCTTGTGCTGTGGAC
57.630
40.909
0.00
0.00
0.00
4.02
95
96
3.281727
TTTCTTCTTGTGCTGTGGACT
57.718
42.857
0.00
0.00
0.00
3.85
98
99
2.170397
TCTTCTTGTGCTGTGGACTGAA
59.830
45.455
0.00
0.00
0.00
3.02
99
100
2.936919
TCTTGTGCTGTGGACTGAAT
57.063
45.000
0.00
0.00
0.00
2.57
100
101
3.213206
TCTTGTGCTGTGGACTGAATT
57.787
42.857
0.00
0.00
0.00
2.17
101
102
3.554934
TCTTGTGCTGTGGACTGAATTT
58.445
40.909
0.00
0.00
0.00
1.82
102
103
3.953612
TCTTGTGCTGTGGACTGAATTTT
59.046
39.130
0.00
0.00
0.00
1.82
103
104
3.713858
TGTGCTGTGGACTGAATTTTG
57.286
42.857
0.00
0.00
0.00
2.44
104
105
3.286353
TGTGCTGTGGACTGAATTTTGA
58.714
40.909
0.00
0.00
0.00
2.69
105
106
3.698539
TGTGCTGTGGACTGAATTTTGAA
59.301
39.130
0.00
0.00
0.00
2.69
106
107
4.159321
TGTGCTGTGGACTGAATTTTGAAA
59.841
37.500
0.00
0.00
0.00
2.69
107
108
5.163426
TGTGCTGTGGACTGAATTTTGAAAT
60.163
36.000
0.00
0.00
0.00
2.17
108
109
5.176223
GTGCTGTGGACTGAATTTTGAAATG
59.824
40.000
0.00
0.00
0.00
2.32
110
111
4.630111
TGTGGACTGAATTTTGAAATGGC
58.370
39.130
0.00
0.00
0.00
4.40
111
112
4.100653
TGTGGACTGAATTTTGAAATGGCA
59.899
37.500
0.00
0.00
0.00
4.92
112
113
5.055812
GTGGACTGAATTTTGAAATGGCAA
58.944
37.500
0.00
0.00
0.00
4.52
113
114
5.702209
GTGGACTGAATTTTGAAATGGCAAT
59.298
36.000
0.00
0.00
0.00
3.56
114
115
6.205270
GTGGACTGAATTTTGAAATGGCAATT
59.795
34.615
0.00
0.00
0.00
2.32
124
125
3.244976
GAAATGGCAATTTCTGACGTGG
58.755
45.455
17.82
0.00
45.56
4.94
128
129
1.606668
GGCAATTTCTGACGTGGTGAA
59.393
47.619
0.00
0.00
0.00
3.18
129
130
2.034053
GGCAATTTCTGACGTGGTGAAA
59.966
45.455
0.00
0.77
34.75
2.69
130
131
3.490078
GGCAATTTCTGACGTGGTGAAAA
60.490
43.478
0.00
0.00
34.09
2.29
132
133
4.667262
CAATTTCTGACGTGGTGAAAACA
58.333
39.130
0.00
0.00
34.09
2.83
133
134
5.280945
CAATTTCTGACGTGGTGAAAACAT
58.719
37.500
0.00
0.00
34.09
2.71
134
135
4.545823
TTTCTGACGTGGTGAAAACATC
57.454
40.909
0.00
0.00
0.00
3.06
135
136
3.469008
TCTGACGTGGTGAAAACATCT
57.531
42.857
0.00
0.00
0.00
2.90
137
138
3.559655
TCTGACGTGGTGAAAACATCTTG
59.440
43.478
0.00
0.00
0.00
3.02
138
139
3.275143
TGACGTGGTGAAAACATCTTGT
58.725
40.909
0.00
0.00
0.00
3.16
140
141
5.060506
TGACGTGGTGAAAACATCTTGTAT
58.939
37.500
0.00
0.00
0.00
2.29
141
142
5.529430
TGACGTGGTGAAAACATCTTGTATT
59.471
36.000
0.00
0.00
0.00
1.89
142
143
6.706716
TGACGTGGTGAAAACATCTTGTATTA
59.293
34.615
0.00
0.00
0.00
0.98
143
144
7.226918
TGACGTGGTGAAAACATCTTGTATTAA
59.773
33.333
0.00
0.00
0.00
1.40
144
145
8.106247
ACGTGGTGAAAACATCTTGTATTAAT
57.894
30.769
0.00
0.00
0.00
1.40
145
146
8.020819
ACGTGGTGAAAACATCTTGTATTAATG
58.979
33.333
0.00
0.00
0.00
1.90
146
147
8.020819
CGTGGTGAAAACATCTTGTATTAATGT
58.979
33.333
0.00
0.00
35.20
2.71
148
149
9.689976
TGGTGAAAACATCTTGTATTAATGTTG
57.310
29.630
0.00
0.00
41.47
3.33
149
150
9.691362
GGTGAAAACATCTTGTATTAATGTTGT
57.309
29.630
0.00
0.00
41.47
3.32
183
184
9.533253
AAACTGTAATAATTAAAGGCATGCATC
57.467
29.630
21.36
2.42
0.00
3.91
184
185
8.469309
ACTGTAATAATTAAAGGCATGCATCT
57.531
30.769
21.36
0.25
0.00
2.90
185
186
8.355169
ACTGTAATAATTAAAGGCATGCATCTG
58.645
33.333
21.36
3.06
0.00
2.90
186
187
7.660112
TGTAATAATTAAAGGCATGCATCTGG
58.340
34.615
21.36
0.00
0.00
3.86
187
188
6.736110
AATAATTAAAGGCATGCATCTGGT
57.264
33.333
21.36
1.47
0.00
4.00
189
190
3.370840
TTAAAGGCATGCATCTGGTCT
57.629
42.857
21.36
1.85
0.00
3.85
191
192
0.622136
AAGGCATGCATCTGGTCTGA
59.378
50.000
21.36
0.00
0.00
3.27
192
193
0.622136
AGGCATGCATCTGGTCTGAA
59.378
50.000
21.36
0.00
0.00
3.02
194
195
1.456296
GCATGCATCTGGTCTGAACA
58.544
50.000
14.21
0.00
0.00
3.18
196
197
2.426024
GCATGCATCTGGTCTGAACATT
59.574
45.455
14.21
0.00
0.00
2.71
199
200
2.224843
TGCATCTGGTCTGAACATTGGT
60.225
45.455
0.00
0.00
0.00
3.67
200
201
2.163010
GCATCTGGTCTGAACATTGGTG
59.837
50.000
0.00
0.00
0.00
4.17
202
203
2.849942
TCTGGTCTGAACATTGGTGTG
58.150
47.619
0.00
0.00
38.92
3.82
203
204
2.437651
TCTGGTCTGAACATTGGTGTGA
59.562
45.455
0.00
0.00
38.92
3.58
204
205
3.072915
TCTGGTCTGAACATTGGTGTGAT
59.927
43.478
0.00
0.00
38.92
3.06
205
206
3.822735
CTGGTCTGAACATTGGTGTGATT
59.177
43.478
0.00
0.00
38.92
2.57
206
207
3.820467
TGGTCTGAACATTGGTGTGATTC
59.180
43.478
0.00
0.00
38.92
2.52
207
208
3.120199
GGTCTGAACATTGGTGTGATTCG
60.120
47.826
0.00
0.00
38.92
3.34
208
209
3.745975
GTCTGAACATTGGTGTGATTCGA
59.254
43.478
0.00
0.00
38.92
3.71
209
210
4.213270
GTCTGAACATTGGTGTGATTCGAA
59.787
41.667
0.00
0.00
38.92
3.71
210
211
4.452114
TCTGAACATTGGTGTGATTCGAAG
59.548
41.667
3.35
0.00
38.92
3.79
211
212
3.058293
TGAACATTGGTGTGATTCGAAGC
60.058
43.478
6.43
6.43
38.92
3.86
212
213
1.812571
ACATTGGTGTGATTCGAAGCC
59.187
47.619
11.45
2.97
37.14
4.35
213
214
1.086696
ATTGGTGTGATTCGAAGCCG
58.913
50.000
11.45
0.00
37.07
5.52
214
215
0.250124
TTGGTGTGATTCGAAGCCGT
60.250
50.000
11.45
0.00
37.05
5.68
215
216
0.250124
TGGTGTGATTCGAAGCCGTT
60.250
50.000
11.45
0.00
37.05
4.44
216
217
0.442699
GGTGTGATTCGAAGCCGTTC
59.557
55.000
11.45
0.00
37.05
3.95
217
218
1.144969
GTGTGATTCGAAGCCGTTCA
58.855
50.000
11.45
2.40
37.05
3.18
218
219
1.529438
GTGTGATTCGAAGCCGTTCAA
59.471
47.619
11.45
0.00
37.05
2.69
219
220
2.159627
GTGTGATTCGAAGCCGTTCAAT
59.840
45.455
11.45
0.00
37.05
2.57
220
221
2.811431
TGTGATTCGAAGCCGTTCAATT
59.189
40.909
11.45
0.00
37.05
2.32
221
222
3.252215
TGTGATTCGAAGCCGTTCAATTT
59.748
39.130
11.45
0.00
37.05
1.82
225
226
3.536158
TCGAAGCCGTTCAATTTTCTG
57.464
42.857
0.00
0.00
37.05
3.02
226
227
2.225491
TCGAAGCCGTTCAATTTTCTGG
59.775
45.455
0.00
0.00
37.05
3.86
227
228
2.031157
CGAAGCCGTTCAATTTTCTGGT
60.031
45.455
0.00
0.00
32.36
4.00
231
232
2.223947
GCCGTTCAATTTTCTGGTTGGT
60.224
45.455
0.00
0.00
0.00
3.67
232
233
3.380142
CCGTTCAATTTTCTGGTTGGTG
58.620
45.455
0.00
0.00
0.00
4.17
233
234
2.794350
CGTTCAATTTTCTGGTTGGTGC
59.206
45.455
0.00
0.00
0.00
5.01
234
235
2.791383
TCAATTTTCTGGTTGGTGCG
57.209
45.000
0.00
0.00
0.00
5.34
235
236
2.302260
TCAATTTTCTGGTTGGTGCGA
58.698
42.857
0.00
0.00
0.00
5.10
236
237
2.890311
TCAATTTTCTGGTTGGTGCGAT
59.110
40.909
0.00
0.00
0.00
4.58
238
239
4.083003
TCAATTTTCTGGTTGGTGCGATAC
60.083
41.667
0.00
0.00
0.00
2.24
239
240
2.851263
TTTCTGGTTGGTGCGATACT
57.149
45.000
0.00
0.00
0.00
2.12
241
242
3.965379
TTCTGGTTGGTGCGATACTAA
57.035
42.857
0.00
0.00
0.00
2.24
242
243
3.520290
TCTGGTTGGTGCGATACTAAG
57.480
47.619
0.00
0.00
29.73
2.18
243
244
3.093814
TCTGGTTGGTGCGATACTAAGA
58.906
45.455
0.00
0.00
29.73
2.10
244
245
3.130516
TCTGGTTGGTGCGATACTAAGAG
59.869
47.826
0.00
0.00
29.73
2.85
245
246
2.202566
GGTTGGTGCGATACTAAGAGC
58.797
52.381
0.00
0.00
29.73
4.09
246
247
2.418197
GGTTGGTGCGATACTAAGAGCA
60.418
50.000
0.00
0.00
37.26
4.26
247
248
3.259064
GTTGGTGCGATACTAAGAGCAA
58.741
45.455
0.00
0.00
41.56
3.91
248
249
2.888594
TGGTGCGATACTAAGAGCAAC
58.111
47.619
0.00
0.00
46.51
4.17
249
250
2.496070
TGGTGCGATACTAAGAGCAACT
59.504
45.455
5.91
0.00
46.47
3.16
250
251
3.117046
GGTGCGATACTAAGAGCAACTC
58.883
50.000
0.00
0.00
43.34
3.01
251
252
3.117046
GTGCGATACTAAGAGCAACTCC
58.883
50.000
0.00
0.00
41.56
3.85
252
253
2.758423
TGCGATACTAAGAGCAACTCCA
59.242
45.455
0.00
0.00
36.60
3.86
253
254
3.194755
TGCGATACTAAGAGCAACTCCAA
59.805
43.478
0.00
0.00
36.60
3.53
254
255
4.141937
TGCGATACTAAGAGCAACTCCAAT
60.142
41.667
0.00
0.00
36.60
3.16
255
256
4.210120
GCGATACTAAGAGCAACTCCAATG
59.790
45.833
0.00
0.00
0.00
2.82
256
257
4.210120
CGATACTAAGAGCAACTCCAATGC
59.790
45.833
0.00
0.00
44.15
3.56
263
264
2.746277
AACTCCAATGCGGCGACC
60.746
61.111
12.98
0.00
33.14
4.79
265
266
1.895020
AACTCCAATGCGGCGACCTA
61.895
55.000
12.98
0.00
33.14
3.08
266
267
1.069765
CTCCAATGCGGCGACCTAT
59.930
57.895
12.98
0.00
33.14
2.57
267
268
0.532862
CTCCAATGCGGCGACCTATT
60.533
55.000
12.98
1.93
33.14
1.73
271
272
0.461339
AATGCGGCGACCTATTTCGT
60.461
50.000
12.98
0.00
41.26
3.85
273
274
2.235699
GCGGCGACCTATTTCGTCC
61.236
63.158
12.98
0.00
40.60
4.79
274
275
1.942712
CGGCGACCTATTTCGTCCG
60.943
63.158
0.00
11.78
45.30
4.79
275
276
2.235699
GGCGACCTATTTCGTCCGC
61.236
63.158
0.00
0.00
41.26
5.54
277
278
1.749609
GCGACCTATTTCGTCCGCAC
61.750
60.000
0.00
0.00
41.26
5.34
279
280
1.143969
GACCTATTTCGTCCGCACGG
61.144
60.000
0.00
1.73
46.70
4.94
280
281
1.153706
CCTATTTCGTCCGCACGGT
60.154
57.895
9.23
0.00
46.70
4.83
281
282
0.738412
CCTATTTCGTCCGCACGGTT
60.738
55.000
9.23
0.00
46.70
4.44
283
284
1.072116
TATTTCGTCCGCACGGTTCG
61.072
55.000
9.23
14.49
46.70
3.95
286
287
3.332409
CGTCCGCACGGTTCGTTT
61.332
61.111
9.23
0.00
42.73
3.60
288
289
2.968156
TCCGCACGGTTCGTTTGG
60.968
61.111
9.23
0.00
38.32
3.28
289
290
4.020378
CCGCACGGTTCGTTTGGG
62.020
66.667
0.00
0.00
38.32
4.12
290
291
3.273834
CGCACGGTTCGTTTGGGT
61.274
61.111
0.00
0.00
38.32
4.51
291
292
2.635338
GCACGGTTCGTTTGGGTC
59.365
61.111
0.00
0.00
38.32
4.46
293
294
1.716826
GCACGGTTCGTTTGGGTCAA
61.717
55.000
0.00
0.00
38.32
3.18
294
295
0.733729
CACGGTTCGTTTGGGTCAAA
59.266
50.000
0.00
0.00
38.32
2.69
300
301
3.431856
GTTCGTTTGGGTCAAAACTGAC
58.568
45.455
0.00
0.00
37.80
3.51
301
302
2.712709
TCGTTTGGGTCAAAACTGACA
58.287
42.857
7.51
0.00
40.38
3.58
302
303
2.420722
TCGTTTGGGTCAAAACTGACAC
59.579
45.455
7.51
4.18
42.26
3.67
308
309
4.450082
GGGTCAAAACTGACACAAAAGT
57.550
40.909
7.51
0.00
41.59
2.66
310
311
4.095610
GGTCAAAACTGACACAAAAGTCG
58.904
43.478
7.51
0.00
41.41
4.18
313
314
1.021968
AACTGACACAAAAGTCGGCC
58.978
50.000
0.00
0.00
46.48
6.13
314
315
0.818040
ACTGACACAAAAGTCGGCCC
60.818
55.000
0.00
0.00
46.48
5.80
316
317
0.394488
TGACACAAAAGTCGGCCCAA
60.394
50.000
0.00
0.00
41.41
4.12
317
318
0.958822
GACACAAAAGTCGGCCCAAT
59.041
50.000
0.00
0.00
0.00
3.16
318
319
0.673437
ACACAAAAGTCGGCCCAATG
59.327
50.000
0.00
0.00
0.00
2.82
319
320
0.667184
CACAAAAGTCGGCCCAATGC
60.667
55.000
0.00
0.00
40.16
3.56
320
321
1.112315
ACAAAAGTCGGCCCAATGCA
61.112
50.000
0.00
0.00
43.89
3.96
321
322
0.247185
CAAAAGTCGGCCCAATGCAT
59.753
50.000
0.00
0.00
43.89
3.96
324
325
2.513666
GTCGGCCCAATGCATCGA
60.514
61.111
0.00
0.70
43.89
3.59
325
326
2.513666
TCGGCCCAATGCATCGAC
60.514
61.111
0.00
0.00
43.89
4.20
327
328
3.219198
GGCCCAATGCATCGACCC
61.219
66.667
0.00
0.00
43.89
4.46
329
330
2.051518
GCCCAATGCATCGACCCAA
61.052
57.895
0.00
0.00
40.77
4.12
330
331
1.603236
GCCCAATGCATCGACCCAAA
61.603
55.000
0.00
0.00
40.77
3.28
331
332
0.173255
CCCAATGCATCGACCCAAAC
59.827
55.000
0.00
0.00
0.00
2.93
332
333
0.179166
CCAATGCATCGACCCAAACG
60.179
55.000
0.00
0.00
0.00
3.60
335
336
0.802494
ATGCATCGACCCAAACGAAC
59.198
50.000
0.00
0.00
42.80
3.95
336
337
0.533085
TGCATCGACCCAAACGAACA
60.533
50.000
0.00
0.00
42.80
3.18
337
338
0.802494
GCATCGACCCAAACGAACAT
59.198
50.000
0.00
0.00
42.80
2.71
338
339
1.465689
GCATCGACCCAAACGAACATG
60.466
52.381
0.00
0.00
42.80
3.21
339
340
1.804151
CATCGACCCAAACGAACATGT
59.196
47.619
0.00
0.00
42.80
3.21
340
341
1.222300
TCGACCCAAACGAACATGTG
58.778
50.000
0.00
0.00
36.84
3.21
341
342
0.941542
CGACCCAAACGAACATGTGT
59.058
50.000
0.00
0.00
0.00
3.72
343
344
2.223386
CGACCCAAACGAACATGTGTTT
60.223
45.455
0.00
3.59
38.56
2.83
348
349
4.838665
CAAACGAACATGTGTTTGCTTT
57.161
36.364
21.76
9.28
45.64
3.51
350
351
5.247340
CAAACGAACATGTGTTTGCTTTTC
58.753
37.500
21.76
4.11
45.64
2.29
351
352
3.105203
ACGAACATGTGTTTGCTTTTCG
58.895
40.909
12.00
4.03
41.91
3.46
352
353
3.105203
CGAACATGTGTTTGCTTTTCGT
58.895
40.909
0.00
0.00
38.56
3.85
353
354
3.545873
CGAACATGTGTTTGCTTTTCGTT
59.454
39.130
0.00
0.00
38.56
3.85
354
355
4.316377
CGAACATGTGTTTGCTTTTCGTTC
60.316
41.667
0.00
0.00
38.56
3.95
356
357
1.540407
TGTGTTTGCTTTTCGTTCGC
58.460
45.000
0.00
0.00
0.00
4.70
357
358
1.131504
TGTGTTTGCTTTTCGTTCGCT
59.868
42.857
0.00
0.00
0.00
4.93
358
359
2.182014
GTGTTTGCTTTTCGTTCGCTT
58.818
42.857
0.00
0.00
0.00
4.68
359
360
2.035756
GTGTTTGCTTTTCGTTCGCTTG
60.036
45.455
0.00
0.00
0.00
4.01
360
361
1.072154
GTTTGCTTTTCGTTCGCTTGC
60.072
47.619
0.00
0.00
0.00
4.01
362
363
2.074920
GCTTTTCGTTCGCTTGCCG
61.075
57.895
0.00
0.00
38.61
5.69
363
364
1.567537
CTTTTCGTTCGCTTGCCGA
59.432
52.632
0.00
0.00
45.77
5.54
371
372
3.508840
CGCTTGCCGACCCATTCC
61.509
66.667
0.00
0.00
40.02
3.01
373
374
2.354729
CTTGCCGACCCATTCCCA
59.645
61.111
0.00
0.00
0.00
4.37
374
375
1.750399
CTTGCCGACCCATTCCCAG
60.750
63.158
0.00
0.00
0.00
4.45
375
376
3.936772
TTGCCGACCCATTCCCAGC
62.937
63.158
0.00
0.00
0.00
4.85
376
377
4.115199
GCCGACCCATTCCCAGCT
62.115
66.667
0.00
0.00
0.00
4.24
377
378
2.190578
CCGACCCATTCCCAGCTC
59.809
66.667
0.00
0.00
0.00
4.09
378
379
2.669133
CCGACCCATTCCCAGCTCA
61.669
63.158
0.00
0.00
0.00
4.26
379
380
1.299648
CGACCCATTCCCAGCTCAA
59.700
57.895
0.00
0.00
0.00
3.02
381
382
1.177401
GACCCATTCCCAGCTCAAAC
58.823
55.000
0.00
0.00
0.00
2.93
383
384
0.251742
CCCATTCCCAGCTCAAACCA
60.252
55.000
0.00
0.00
0.00
3.67
385
386
1.272092
CCATTCCCAGCTCAAACCAGA
60.272
52.381
0.00
0.00
0.00
3.86
386
387
2.622452
CCATTCCCAGCTCAAACCAGAT
60.622
50.000
0.00
0.00
0.00
2.90
388
389
2.978156
TCCCAGCTCAAACCAGATTT
57.022
45.000
0.00
0.00
0.00
2.17
390
391
3.686016
TCCCAGCTCAAACCAGATTTAC
58.314
45.455
0.00
0.00
0.00
2.01
392
393
3.074412
CCAGCTCAAACCAGATTTACGT
58.926
45.455
0.00
0.00
0.00
3.57
393
394
3.120199
CCAGCTCAAACCAGATTTACGTG
60.120
47.826
0.00
0.00
0.00
4.49
394
395
3.074412
AGCTCAAACCAGATTTACGTGG
58.926
45.455
0.00
0.00
39.98
4.94
396
397
2.156098
TCAAACCAGATTTACGTGGGC
58.844
47.619
0.00
0.00
38.25
5.36
399
400
2.701006
CAGATTTACGTGGGCGCG
59.299
61.111
0.00
0.00
42.83
6.86
400
401
2.510691
AGATTTACGTGGGCGCGG
60.511
61.111
8.83
0.00
42.83
6.46
401
402
3.569690
GATTTACGTGGGCGCGGG
61.570
66.667
8.83
0.00
42.83
6.13
422
423
3.475774
GAAACGGACGCGCGTGAT
61.476
61.111
42.90
22.39
0.00
3.06
423
424
3.680072
GAAACGGACGCGCGTGATG
62.680
63.158
42.90
29.50
0.00
3.07
436
437
2.041922
TGATGGGCGCCTACTCCT
60.042
61.111
28.56
4.43
0.00
3.69
437
438
2.134287
TGATGGGCGCCTACTCCTC
61.134
63.158
28.56
15.47
0.00
3.71
438
439
2.844839
ATGGGCGCCTACTCCTCC
60.845
66.667
28.56
7.32
0.00
4.30
440
441
4.862823
GGGCGCCTACTCCTCCCT
62.863
72.222
28.56
0.00
34.19
4.20
441
442
2.764547
GGCGCCTACTCCTCCCTT
60.765
66.667
22.15
0.00
0.00
3.95
444
445
2.911928
GCCTACTCCTCCCTTGGC
59.088
66.667
0.00
0.00
0.00
4.52
445
446
2.747443
GCCTACTCCTCCCTTGGCC
61.747
68.421
0.00
0.00
34.81
5.36
446
447
1.003573
CCTACTCCTCCCTTGGCCT
59.996
63.158
3.32
0.00
0.00
5.19
447
448
1.341156
CCTACTCCTCCCTTGGCCTG
61.341
65.000
3.32
0.00
0.00
4.85
448
449
1.977293
CTACTCCTCCCTTGGCCTGC
61.977
65.000
3.32
0.00
0.00
4.85
449
450
4.120755
CTCCTCCCTTGGCCTGCC
62.121
72.222
3.32
0.00
0.00
4.85
469
470
4.858680
TCGGCGGCACAACCACAA
62.859
61.111
10.53
0.00
39.03
3.33
470
471
3.669344
CGGCGGCACAACCACAAT
61.669
61.111
10.53
0.00
39.03
2.71
471
472
2.258286
GGCGGCACAACCACAATC
59.742
61.111
3.07
0.00
39.03
2.67
472
473
2.560119
GGCGGCACAACCACAATCA
61.560
57.895
3.07
0.00
39.03
2.57
473
474
1.586028
GCGGCACAACCACAATCAT
59.414
52.632
0.00
0.00
39.03
2.45
475
476
1.605202
GCGGCACAACCACAATCATTT
60.605
47.619
0.00
0.00
39.03
2.32
476
477
2.327568
CGGCACAACCACAATCATTTC
58.672
47.619
0.00
0.00
39.03
2.17
478
479
2.612721
GGCACAACCACAATCATTTCCC
60.613
50.000
0.00
0.00
38.86
3.97
479
480
2.612721
GCACAACCACAATCATTTCCCC
60.613
50.000
0.00
0.00
0.00
4.81
480
481
2.028203
CACAACCACAATCATTTCCCCC
60.028
50.000
0.00
0.00
0.00
5.40
496
497
0.396435
CCCCCACTTTCCCAAAAAGC
59.604
55.000
0.00
0.00
0.00
3.51
497
498
1.423584
CCCCACTTTCCCAAAAAGCT
58.576
50.000
0.00
0.00
0.00
3.74
498
499
1.344438
CCCCACTTTCCCAAAAAGCTC
59.656
52.381
0.00
0.00
0.00
4.09
499
500
1.344438
CCCACTTTCCCAAAAAGCTCC
59.656
52.381
0.00
0.00
0.00
4.70
500
501
1.344438
CCACTTTCCCAAAAAGCTCCC
59.656
52.381
0.00
0.00
0.00
4.30
501
502
1.000274
CACTTTCCCAAAAAGCTCCCG
60.000
52.381
0.00
0.00
0.00
5.14
502
503
0.038251
CTTTCCCAAAAAGCTCCCGC
60.038
55.000
0.00
0.00
0.00
6.13
503
504
1.468506
TTTCCCAAAAAGCTCCCGCC
61.469
55.000
0.00
0.00
36.60
6.13
504
505
2.283173
CCCAAAAAGCTCCCGCCT
60.283
61.111
0.00
0.00
36.60
5.52
505
506
2.639327
CCCAAAAAGCTCCCGCCTG
61.639
63.158
0.00
0.00
36.60
4.85
506
507
2.259511
CAAAAAGCTCCCGCCTGC
59.740
61.111
0.00
0.00
36.60
4.85
508
509
1.973812
AAAAAGCTCCCGCCTGCTC
60.974
57.895
0.00
0.00
38.75
4.26
509
510
3.927481
AAAAGCTCCCGCCTGCTCC
62.927
63.158
0.00
0.00
38.75
4.70
536
537
3.499737
CCGCTTGCCATGGACGAC
61.500
66.667
18.40
0.00
0.00
4.34
537
538
3.853330
CGCTTGCCATGGACGACG
61.853
66.667
18.40
9.67
0.00
5.12
540
541
3.027170
CTTGCCATGGACGACGTGC
62.027
63.158
18.40
13.06
34.66
5.34
542
543
3.490759
GCCATGGACGACGTGCTG
61.491
66.667
18.40
14.70
34.66
4.41
544
545
2.094659
CCATGGACGACGTGCTGAC
61.095
63.158
20.39
0.00
34.66
3.51
545
546
2.094659
CATGGACGACGTGCTGACC
61.095
63.158
20.39
8.32
0.00
4.02
546
547
3.296709
ATGGACGACGTGCTGACCC
62.297
63.158
20.39
7.59
0.00
4.46
547
548
3.681835
GGACGACGTGCTGACCCT
61.682
66.667
12.67
0.00
0.00
4.34
548
549
2.126424
GACGACGTGCTGACCCTC
60.126
66.667
4.58
0.00
0.00
4.30
549
550
3.948086
GACGACGTGCTGACCCTCG
62.948
68.421
4.58
0.00
0.00
4.63
550
551
3.733960
CGACGTGCTGACCCTCGA
61.734
66.667
0.00
0.00
0.00
4.04
552
553
3.948086
GACGTGCTGACCCTCGACG
62.948
68.421
0.00
0.00
36.14
5.12
575
576
3.855853
GCCTCCCTCGCCTCCTTC
61.856
72.222
0.00
0.00
0.00
3.46
576
577
3.532155
CCTCCCTCGCCTCCTTCG
61.532
72.222
0.00
0.00
0.00
3.79
577
578
3.532155
CTCCCTCGCCTCCTTCGG
61.532
72.222
0.00
0.00
0.00
4.30
584
585
4.475135
GCCTCCTTCGGCCTCACC
62.475
72.222
0.00
0.00
44.41
4.02
585
586
2.685380
CCTCCTTCGGCCTCACCT
60.685
66.667
0.00
0.00
35.61
4.00
586
587
2.726351
CCTCCTTCGGCCTCACCTC
61.726
68.421
0.00
0.00
35.61
3.85
588
589
4.148825
CCTTCGGCCTCACCTCCG
62.149
72.222
0.00
0.00
46.52
4.63
589
590
3.382832
CTTCGGCCTCACCTCCGT
61.383
66.667
0.00
0.00
45.44
4.69
590
591
3.358076
CTTCGGCCTCACCTCCGTC
62.358
68.421
0.00
0.00
45.44
4.79
595
596
3.691342
CCTCACCTCCGTCGCCAA
61.691
66.667
0.00
0.00
0.00
4.52
598
599
2.742372
CACCTCCGTCGCCAAAGG
60.742
66.667
0.00
0.00
34.94
3.11
2611
3935
3.463944
AGTTTCACGAGGAAATGACGTT
58.536
40.909
9.51
0.00
46.55
3.99
2656
3981
0.252103
TTCTGCTTCGGTAGACCCCT
60.252
55.000
0.00
0.00
36.46
4.79
3095
4421
3.802722
TTTTTACGCCATGCATTTTGC
57.197
38.095
0.00
0.00
45.29
3.68
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
15
16
6.205784
CACACCGAATTTGAAATGTGTAAGT
58.794
36.000
10.81
0.00
35.36
2.24
16
17
5.116983
GCACACCGAATTTGAAATGTGTAAG
59.883
40.000
18.34
3.74
39.65
2.34
19
20
3.181482
TGCACACCGAATTTGAAATGTGT
60.181
39.130
18.34
8.11
39.65
3.72
21
22
3.724508
TGCACACCGAATTTGAAATGT
57.275
38.095
0.00
0.00
0.00
2.71
22
23
3.989167
ACATGCACACCGAATTTGAAATG
59.011
39.130
0.00
0.00
0.00
2.32
23
24
4.255833
ACATGCACACCGAATTTGAAAT
57.744
36.364
0.00
0.00
0.00
2.17
24
25
3.724508
ACATGCACACCGAATTTGAAA
57.275
38.095
0.00
0.00
0.00
2.69
25
26
3.724508
AACATGCACACCGAATTTGAA
57.275
38.095
0.00
0.00
0.00
2.69
27
28
3.182173
GTCAAACATGCACACCGAATTTG
59.818
43.478
0.00
0.00
0.00
2.32
28
29
3.181482
TGTCAAACATGCACACCGAATTT
60.181
39.130
0.00
0.00
0.00
1.82
29
30
2.360483
TGTCAAACATGCACACCGAATT
59.640
40.909
0.00
0.00
0.00
2.17
32
33
0.660488
GTGTCAAACATGCACACCGA
59.340
50.000
0.00
0.00
35.38
4.69
33
34
0.380024
TGTGTCAAACATGCACACCG
59.620
50.000
12.67
0.00
39.83
4.94
34
35
3.490590
TGAATGTGTCAAACATGCACACC
60.491
43.478
12.67
6.55
46.23
4.16
35
36
3.704512
TGAATGTGTCAAACATGCACAC
58.295
40.909
5.40
7.77
46.23
3.82
42
43
2.358582
CAGGCTGTGAATGTGTCAAACA
59.641
45.455
6.28
0.00
44.79
2.83
43
44
2.618241
TCAGGCTGTGAATGTGTCAAAC
59.382
45.455
15.27
0.00
38.23
2.93
44
45
2.618241
GTCAGGCTGTGAATGTGTCAAA
59.382
45.455
15.27
0.00
38.23
2.69
45
46
2.221169
GTCAGGCTGTGAATGTGTCAA
58.779
47.619
15.27
0.00
38.23
3.18
46
47
1.873486
CGTCAGGCTGTGAATGTGTCA
60.873
52.381
15.27
0.00
36.74
3.58
47
48
0.792640
CGTCAGGCTGTGAATGTGTC
59.207
55.000
15.27
0.00
36.74
3.67
48
49
0.106708
ACGTCAGGCTGTGAATGTGT
59.893
50.000
15.27
1.23
36.74
3.72
49
50
0.514255
CACGTCAGGCTGTGAATGTG
59.486
55.000
15.27
12.90
36.74
3.21
50
51
0.106708
ACACGTCAGGCTGTGAATGT
59.893
50.000
15.27
11.78
39.38
2.71
51
52
0.792640
GACACGTCAGGCTGTGAATG
59.207
55.000
15.27
11.17
39.38
2.67
52
53
0.681733
AGACACGTCAGGCTGTGAAT
59.318
50.000
15.27
2.65
39.38
2.57
53
54
0.464036
AAGACACGTCAGGCTGTGAA
59.536
50.000
15.27
0.00
39.38
3.18
54
55
0.464036
AAAGACACGTCAGGCTGTGA
59.536
50.000
15.27
0.00
39.38
3.58
56
57
2.038387
AAAAAGACACGTCAGGCTGT
57.962
45.000
15.27
0.00
0.00
4.40
73
74
4.016444
AGTCCACAGCACAAGAAGAAAAA
58.984
39.130
0.00
0.00
0.00
1.94
74
75
3.378112
CAGTCCACAGCACAAGAAGAAAA
59.622
43.478
0.00
0.00
0.00
2.29
77
78
1.762370
TCAGTCCACAGCACAAGAAGA
59.238
47.619
0.00
0.00
0.00
2.87
78
79
2.245159
TCAGTCCACAGCACAAGAAG
57.755
50.000
0.00
0.00
0.00
2.85
79
80
2.708216
TTCAGTCCACAGCACAAGAA
57.292
45.000
0.00
0.00
0.00
2.52
80
81
2.936919
ATTCAGTCCACAGCACAAGA
57.063
45.000
0.00
0.00
0.00
3.02
81
82
3.996150
AAATTCAGTCCACAGCACAAG
57.004
42.857
0.00
0.00
0.00
3.16
83
84
3.286353
TCAAAATTCAGTCCACAGCACA
58.714
40.909
0.00
0.00
0.00
4.57
84
85
3.988379
TCAAAATTCAGTCCACAGCAC
57.012
42.857
0.00
0.00
0.00
4.40
85
86
4.998671
TTTCAAAATTCAGTCCACAGCA
57.001
36.364
0.00
0.00
0.00
4.41
86
87
4.687483
CCATTTCAAAATTCAGTCCACAGC
59.313
41.667
0.00
0.00
0.00
4.40
87
88
4.687483
GCCATTTCAAAATTCAGTCCACAG
59.313
41.667
0.00
0.00
0.00
3.66
88
89
4.100653
TGCCATTTCAAAATTCAGTCCACA
59.899
37.500
0.00
0.00
0.00
4.17
89
90
4.630111
TGCCATTTCAAAATTCAGTCCAC
58.370
39.130
0.00
0.00
0.00
4.02
90
91
4.952071
TGCCATTTCAAAATTCAGTCCA
57.048
36.364
0.00
0.00
0.00
4.02
91
92
6.806388
AATTGCCATTTCAAAATTCAGTCC
57.194
33.333
0.00
0.00
0.00
3.85
103
104
3.244976
CCACGTCAGAAATTGCCATTTC
58.755
45.455
13.93
13.93
46.20
2.17
104
105
2.627699
ACCACGTCAGAAATTGCCATTT
59.372
40.909
0.00
0.00
35.12
2.32
105
106
2.030007
CACCACGTCAGAAATTGCCATT
60.030
45.455
0.00
0.00
0.00
3.16
106
107
1.541147
CACCACGTCAGAAATTGCCAT
59.459
47.619
0.00
0.00
0.00
4.40
107
108
0.950836
CACCACGTCAGAAATTGCCA
59.049
50.000
0.00
0.00
0.00
4.92
108
109
1.234821
TCACCACGTCAGAAATTGCC
58.765
50.000
0.00
0.00
0.00
4.52
110
111
4.667262
TGTTTTCACCACGTCAGAAATTG
58.333
39.130
7.23
0.00
32.00
2.32
111
112
4.974368
TGTTTTCACCACGTCAGAAATT
57.026
36.364
7.23
0.00
32.00
1.82
112
113
4.821805
AGATGTTTTCACCACGTCAGAAAT
59.178
37.500
7.23
0.00
33.25
2.17
113
114
4.196193
AGATGTTTTCACCACGTCAGAAA
58.804
39.130
3.28
3.28
33.25
2.52
114
115
3.804036
AGATGTTTTCACCACGTCAGAA
58.196
40.909
0.00
0.00
33.25
3.02
118
119
3.963383
ACAAGATGTTTTCACCACGTC
57.037
42.857
0.00
0.00
0.00
4.34
119
120
7.499321
TTAATACAAGATGTTTTCACCACGT
57.501
32.000
0.00
0.00
0.00
4.49
120
121
8.020819
ACATTAATACAAGATGTTTTCACCACG
58.979
33.333
0.00
0.00
30.22
4.94
121
122
9.691362
AACATTAATACAAGATGTTTTCACCAC
57.309
29.630
0.00
0.00
40.11
4.16
122
123
9.689976
CAACATTAATACAAGATGTTTTCACCA
57.310
29.630
0.00
0.00
40.84
4.17
155
156
9.717942
TGCATGCCTTTAATTATTACAGTTTTT
57.282
25.926
16.68
0.00
0.00
1.94
159
160
8.355169
CAGATGCATGCCTTTAATTATTACAGT
58.645
33.333
16.68
0.00
0.00
3.55
160
161
7.811236
CCAGATGCATGCCTTTAATTATTACAG
59.189
37.037
16.68
0.00
0.00
2.74
161
162
7.287466
ACCAGATGCATGCCTTTAATTATTACA
59.713
33.333
16.68
0.00
0.00
2.41
162
163
7.661040
ACCAGATGCATGCCTTTAATTATTAC
58.339
34.615
16.68
0.00
0.00
1.89
163
164
7.725397
AGACCAGATGCATGCCTTTAATTATTA
59.275
33.333
16.68
0.00
0.00
0.98
165
166
6.015688
CAGACCAGATGCATGCCTTTAATTAT
60.016
38.462
16.68
0.00
0.00
1.28
166
167
5.300034
CAGACCAGATGCATGCCTTTAATTA
59.700
40.000
16.68
0.00
0.00
1.40
168
169
3.635373
CAGACCAGATGCATGCCTTTAAT
59.365
43.478
16.68
0.26
0.00
1.40
169
170
3.018856
CAGACCAGATGCATGCCTTTAA
58.981
45.455
16.68
0.00
0.00
1.52
170
171
2.239402
TCAGACCAGATGCATGCCTTTA
59.761
45.455
16.68
0.00
0.00
1.85
171
172
1.005097
TCAGACCAGATGCATGCCTTT
59.995
47.619
16.68
0.00
0.00
3.11
173
174
0.622136
TTCAGACCAGATGCATGCCT
59.378
50.000
16.68
4.84
0.00
4.75
174
175
0.737219
GTTCAGACCAGATGCATGCC
59.263
55.000
16.68
0.00
0.00
4.40
175
176
1.456296
TGTTCAGACCAGATGCATGC
58.544
50.000
11.82
11.82
0.00
4.06
176
177
3.181490
CCAATGTTCAGACCAGATGCATG
60.181
47.826
2.46
0.00
0.00
4.06
177
178
3.021695
CCAATGTTCAGACCAGATGCAT
58.978
45.455
0.00
0.00
0.00
3.96
178
179
2.224843
ACCAATGTTCAGACCAGATGCA
60.225
45.455
0.00
0.00
0.00
3.96
179
180
2.163010
CACCAATGTTCAGACCAGATGC
59.837
50.000
0.00
0.00
0.00
3.91
183
184
2.849942
TCACACCAATGTTCAGACCAG
58.150
47.619
0.00
0.00
36.72
4.00
184
185
3.507162
ATCACACCAATGTTCAGACCA
57.493
42.857
0.00
0.00
36.72
4.02
185
186
3.120199
CGAATCACACCAATGTTCAGACC
60.120
47.826
0.00
0.00
36.72
3.85
186
187
3.745975
TCGAATCACACCAATGTTCAGAC
59.254
43.478
0.00
0.00
36.72
3.51
187
188
4.001618
TCGAATCACACCAATGTTCAGA
57.998
40.909
0.00
0.00
36.72
3.27
189
190
3.058293
GCTTCGAATCACACCAATGTTCA
60.058
43.478
0.00
0.00
36.72
3.18
191
192
2.228822
GGCTTCGAATCACACCAATGTT
59.771
45.455
0.00
0.00
36.72
2.71
192
193
1.812571
GGCTTCGAATCACACCAATGT
59.187
47.619
0.00
0.00
40.80
2.71
194
195
1.086696
CGGCTTCGAATCACACCAAT
58.913
50.000
0.00
0.00
35.61
3.16
196
197
0.250124
AACGGCTTCGAATCACACCA
60.250
50.000
0.00
0.00
37.63
4.17
199
200
1.872388
TTGAACGGCTTCGAATCACA
58.128
45.000
0.00
0.00
34.83
3.58
200
201
3.471495
AATTGAACGGCTTCGAATCAC
57.529
42.857
0.00
0.00
34.83
3.06
202
203
4.554973
CAGAAAATTGAACGGCTTCGAATC
59.445
41.667
0.00
0.00
37.63
2.52
203
204
4.475944
CAGAAAATTGAACGGCTTCGAAT
58.524
39.130
0.00
0.00
37.63
3.34
204
205
3.304391
CCAGAAAATTGAACGGCTTCGAA
60.304
43.478
0.00
0.00
37.63
3.71
205
206
2.225491
CCAGAAAATTGAACGGCTTCGA
59.775
45.455
0.00
0.00
37.63
3.71
206
207
2.031157
ACCAGAAAATTGAACGGCTTCG
60.031
45.455
0.00
0.00
40.22
3.79
207
208
3.643159
ACCAGAAAATTGAACGGCTTC
57.357
42.857
0.00
0.00
0.00
3.86
208
209
3.492482
CCAACCAGAAAATTGAACGGCTT
60.492
43.478
0.00
0.00
0.00
4.35
209
210
2.035832
CCAACCAGAAAATTGAACGGCT
59.964
45.455
0.00
0.00
0.00
5.52
210
211
2.223947
ACCAACCAGAAAATTGAACGGC
60.224
45.455
0.00
0.00
0.00
5.68
211
212
3.380142
CACCAACCAGAAAATTGAACGG
58.620
45.455
0.00
0.00
0.00
4.44
212
213
2.794350
GCACCAACCAGAAAATTGAACG
59.206
45.455
0.00
0.00
0.00
3.95
213
214
2.794350
CGCACCAACCAGAAAATTGAAC
59.206
45.455
0.00
0.00
0.00
3.18
214
215
2.690497
TCGCACCAACCAGAAAATTGAA
59.310
40.909
0.00
0.00
0.00
2.69
215
216
2.302260
TCGCACCAACCAGAAAATTGA
58.698
42.857
0.00
0.00
0.00
2.57
216
217
2.791383
TCGCACCAACCAGAAAATTG
57.209
45.000
0.00
0.00
0.00
2.32
217
218
4.079253
AGTATCGCACCAACCAGAAAATT
58.921
39.130
0.00
0.00
0.00
1.82
218
219
3.686016
AGTATCGCACCAACCAGAAAAT
58.314
40.909
0.00
0.00
0.00
1.82
219
220
3.134574
AGTATCGCACCAACCAGAAAA
57.865
42.857
0.00
0.00
0.00
2.29
220
221
2.851263
AGTATCGCACCAACCAGAAA
57.149
45.000
0.00
0.00
0.00
2.52
221
222
3.512329
TCTTAGTATCGCACCAACCAGAA
59.488
43.478
0.00
0.00
0.00
3.02
225
226
2.202566
GCTCTTAGTATCGCACCAACC
58.797
52.381
0.00
0.00
0.00
3.77
226
227
2.888594
TGCTCTTAGTATCGCACCAAC
58.111
47.619
0.00
0.00
0.00
3.77
227
228
3.056107
AGTTGCTCTTAGTATCGCACCAA
60.056
43.478
0.00
0.00
31.24
3.67
231
232
2.758423
TGGAGTTGCTCTTAGTATCGCA
59.242
45.455
0.00
0.00
0.00
5.10
232
233
3.438297
TGGAGTTGCTCTTAGTATCGC
57.562
47.619
0.00
0.00
0.00
4.58
233
234
4.210120
GCATTGGAGTTGCTCTTAGTATCG
59.790
45.833
0.00
0.00
37.14
2.92
234
235
4.210120
CGCATTGGAGTTGCTCTTAGTATC
59.790
45.833
0.00
0.00
37.96
2.24
235
236
4.122776
CGCATTGGAGTTGCTCTTAGTAT
58.877
43.478
0.00
0.00
37.96
2.12
236
237
3.521560
CGCATTGGAGTTGCTCTTAGTA
58.478
45.455
0.00
0.00
37.96
1.82
238
239
1.667724
CCGCATTGGAGTTGCTCTTAG
59.332
52.381
0.00
0.00
42.00
2.18
239
240
1.737838
CCGCATTGGAGTTGCTCTTA
58.262
50.000
0.00
0.00
42.00
2.10
241
242
2.042831
GCCGCATTGGAGTTGCTCT
61.043
57.895
0.00
0.00
42.00
4.09
242
243
2.486966
GCCGCATTGGAGTTGCTC
59.513
61.111
0.00
0.00
42.00
4.26
243
244
3.434319
CGCCGCATTGGAGTTGCT
61.434
61.111
0.00
0.00
42.00
3.91
244
245
3.430862
TCGCCGCATTGGAGTTGC
61.431
61.111
0.00
0.00
42.00
4.17
245
246
2.480555
GTCGCCGCATTGGAGTTG
59.519
61.111
0.00
0.00
42.00
3.16
246
247
1.895020
TAGGTCGCCGCATTGGAGTT
61.895
55.000
0.00
0.00
42.00
3.01
247
248
1.686325
ATAGGTCGCCGCATTGGAGT
61.686
55.000
0.00
0.00
42.00
3.85
248
249
0.532862
AATAGGTCGCCGCATTGGAG
60.533
55.000
0.00
0.00
42.00
3.86
249
250
0.107410
AAATAGGTCGCCGCATTGGA
60.107
50.000
0.00
0.00
42.00
3.53
250
251
0.307760
GAAATAGGTCGCCGCATTGG
59.692
55.000
0.00
0.00
42.50
3.16
251
252
0.042188
CGAAATAGGTCGCCGCATTG
60.042
55.000
0.00
0.00
33.66
2.82
252
253
0.461339
ACGAAATAGGTCGCCGCATT
60.461
50.000
0.00
0.00
45.00
3.56
253
254
0.874607
GACGAAATAGGTCGCCGCAT
60.875
55.000
0.00
0.00
45.00
4.73
254
255
1.517694
GACGAAATAGGTCGCCGCA
60.518
57.895
0.00
0.00
45.00
5.69
255
256
2.235699
GGACGAAATAGGTCGCCGC
61.236
63.158
0.00
0.00
45.00
6.53
256
257
1.942712
CGGACGAAATAGGTCGCCG
60.943
63.158
13.13
13.13
46.21
6.46
257
258
2.235699
GCGGACGAAATAGGTCGCC
61.236
63.158
0.00
0.00
45.00
5.54
258
259
1.517694
TGCGGACGAAATAGGTCGC
60.518
57.895
0.00
0.00
45.00
5.19
259
260
2.285154
GTGCGGACGAAATAGGTCG
58.715
57.895
0.00
0.00
46.54
4.79
271
272
2.968156
CCAAACGAACCGTGCGGA
60.968
61.111
18.16
0.00
39.99
5.54
273
274
3.231324
GACCCAAACGAACCGTGCG
62.231
63.158
0.00
0.00
39.99
5.34
274
275
1.716826
TTGACCCAAACGAACCGTGC
61.717
55.000
0.00
0.00
39.99
5.34
275
276
0.733729
TTTGACCCAAACGAACCGTG
59.266
50.000
0.00
0.00
39.99
4.94
277
278
1.402613
AGTTTTGACCCAAACGAACCG
59.597
47.619
0.00
0.00
32.79
4.44
278
279
2.424246
TCAGTTTTGACCCAAACGAACC
59.576
45.455
0.00
0.00
32.79
3.62
279
280
3.431856
GTCAGTTTTGACCCAAACGAAC
58.568
45.455
0.00
0.00
46.47
3.95
280
281
3.768468
GTCAGTTTTGACCCAAACGAA
57.232
42.857
0.00
0.00
46.47
3.85
290
291
3.426963
GCCGACTTTTGTGTCAGTTTTGA
60.427
43.478
0.00
0.00
36.82
2.69
291
292
2.851824
GCCGACTTTTGTGTCAGTTTTG
59.148
45.455
0.00
0.00
36.82
2.44
293
294
1.404035
GGCCGACTTTTGTGTCAGTTT
59.596
47.619
0.00
0.00
36.82
2.66
294
295
1.021968
GGCCGACTTTTGTGTCAGTT
58.978
50.000
0.00
0.00
36.82
3.16
300
301
0.667184
GCATTGGGCCGACTTTTGTG
60.667
55.000
0.00
0.00
36.11
3.33
301
302
1.112315
TGCATTGGGCCGACTTTTGT
61.112
50.000
0.00
0.00
43.89
2.83
302
303
0.247185
ATGCATTGGGCCGACTTTTG
59.753
50.000
0.00
0.00
43.89
2.44
304
305
1.656818
CGATGCATTGGGCCGACTTT
61.657
55.000
5.98
0.00
43.89
2.66
306
307
2.514592
CGATGCATTGGGCCGACT
60.515
61.111
5.98
0.00
43.89
4.18
307
308
2.513666
TCGATGCATTGGGCCGAC
60.514
61.111
14.12
0.00
43.89
4.79
308
309
2.513666
GTCGATGCATTGGGCCGA
60.514
61.111
14.12
8.65
43.89
5.54
310
311
3.219198
GGGTCGATGCATTGGGCC
61.219
66.667
14.12
13.24
43.89
5.80
311
312
1.603236
TTTGGGTCGATGCATTGGGC
61.603
55.000
14.12
4.46
45.13
5.36
313
314
0.179166
CGTTTGGGTCGATGCATTGG
60.179
55.000
14.12
3.25
0.00
3.16
314
315
0.801872
TCGTTTGGGTCGATGCATTG
59.198
50.000
7.70
7.70
32.30
2.82
316
317
0.802494
GTTCGTTTGGGTCGATGCAT
59.198
50.000
0.00
0.00
37.18
3.96
317
318
0.533085
TGTTCGTTTGGGTCGATGCA
60.533
50.000
0.00
0.00
37.18
3.96
318
319
0.802494
ATGTTCGTTTGGGTCGATGC
59.198
50.000
0.00
0.00
37.18
3.91
319
320
1.804151
ACATGTTCGTTTGGGTCGATG
59.196
47.619
0.00
0.00
37.18
3.84
320
321
1.804151
CACATGTTCGTTTGGGTCGAT
59.196
47.619
0.00
0.00
37.18
3.59
321
322
1.222300
CACATGTTCGTTTGGGTCGA
58.778
50.000
0.00
0.00
35.50
4.20
324
325
3.157932
CAAACACATGTTCGTTTGGGT
57.842
42.857
24.07
4.97
45.23
4.51
329
330
3.545873
CGAAAAGCAAACACATGTTCGTT
59.454
39.130
0.00
0.00
37.25
3.85
330
331
3.105203
CGAAAAGCAAACACATGTTCGT
58.895
40.909
0.00
0.00
37.25
3.85
331
332
3.105203
ACGAAAAGCAAACACATGTTCG
58.895
40.909
0.00
2.08
41.46
3.95
332
333
4.316377
CGAACGAAAAGCAAACACATGTTC
60.316
41.667
0.00
0.00
37.25
3.18
335
336
2.097925
GCGAACGAAAAGCAAACACATG
60.098
45.455
0.00
0.00
0.00
3.21
336
337
2.116366
GCGAACGAAAAGCAAACACAT
58.884
42.857
0.00
0.00
0.00
3.21
337
338
1.131504
AGCGAACGAAAAGCAAACACA
59.868
42.857
0.00
0.00
0.00
3.72
338
339
1.822581
AGCGAACGAAAAGCAAACAC
58.177
45.000
0.00
0.00
0.00
3.32
339
340
2.181205
CAAGCGAACGAAAAGCAAACA
58.819
42.857
0.00
0.00
0.00
2.83
340
341
1.072154
GCAAGCGAACGAAAAGCAAAC
60.072
47.619
0.00
0.00
0.00
2.93
341
342
1.196200
GCAAGCGAACGAAAAGCAAA
58.804
45.000
0.00
0.00
0.00
3.68
343
344
1.008995
GGCAAGCGAACGAAAAGCA
60.009
52.632
0.00
0.00
0.00
3.91
345
346
0.721483
GTCGGCAAGCGAACGAAAAG
60.721
55.000
0.00
0.00
38.46
2.27
346
347
1.277440
GTCGGCAAGCGAACGAAAA
59.723
52.632
0.00
0.00
38.46
2.29
347
348
2.600475
GGTCGGCAAGCGAACGAAA
61.600
57.895
0.00
0.00
38.46
3.46
348
349
3.039588
GGTCGGCAAGCGAACGAA
61.040
61.111
0.00
0.00
38.46
3.85
351
352
2.253414
GAATGGGTCGGCAAGCGAAC
62.253
60.000
0.00
0.00
0.00
3.95
352
353
2.033448
AATGGGTCGGCAAGCGAA
59.967
55.556
0.00
0.00
0.00
4.70
353
354
2.435938
GAATGGGTCGGCAAGCGA
60.436
61.111
0.00
0.00
0.00
4.93
354
355
3.508840
GGAATGGGTCGGCAAGCG
61.509
66.667
0.00
0.00
0.00
4.68
356
357
1.750399
CTGGGAATGGGTCGGCAAG
60.750
63.158
0.00
0.00
0.00
4.01
357
358
2.354729
CTGGGAATGGGTCGGCAA
59.645
61.111
0.00
0.00
0.00
4.52
358
359
4.424711
GCTGGGAATGGGTCGGCA
62.425
66.667
0.00
0.00
0.00
5.69
359
360
4.115199
AGCTGGGAATGGGTCGGC
62.115
66.667
0.00
0.00
0.00
5.54
360
361
2.190578
GAGCTGGGAATGGGTCGG
59.809
66.667
0.00
0.00
0.00
4.79
362
363
1.177401
GTTTGAGCTGGGAATGGGTC
58.823
55.000
0.00
0.00
0.00
4.46
363
364
0.251787
GGTTTGAGCTGGGAATGGGT
60.252
55.000
0.00
0.00
0.00
4.51
364
365
0.251742
TGGTTTGAGCTGGGAATGGG
60.252
55.000
0.00
0.00
0.00
4.00
365
366
1.180029
CTGGTTTGAGCTGGGAATGG
58.820
55.000
0.00
0.00
0.00
3.16
366
367
2.205022
TCTGGTTTGAGCTGGGAATG
57.795
50.000
0.00
0.00
0.00
2.67
367
368
3.463048
AATCTGGTTTGAGCTGGGAAT
57.537
42.857
0.00
0.00
0.00
3.01
368
369
2.978156
AATCTGGTTTGAGCTGGGAA
57.022
45.000
0.00
0.00
0.00
3.97
369
370
2.978156
AAATCTGGTTTGAGCTGGGA
57.022
45.000
0.00
0.00
0.00
4.37
371
372
3.074412
ACGTAAATCTGGTTTGAGCTGG
58.926
45.455
0.00
0.00
0.00
4.85
373
374
3.074412
CCACGTAAATCTGGTTTGAGCT
58.926
45.455
0.00
0.00
0.00
4.09
374
375
2.161609
CCCACGTAAATCTGGTTTGAGC
59.838
50.000
0.00
0.00
0.00
4.26
375
376
2.161609
GCCCACGTAAATCTGGTTTGAG
59.838
50.000
0.00
0.00
0.00
3.02
376
377
2.156098
GCCCACGTAAATCTGGTTTGA
58.844
47.619
0.00
0.00
0.00
2.69
377
378
1.135803
CGCCCACGTAAATCTGGTTTG
60.136
52.381
0.00
0.00
33.53
2.93
378
379
1.161843
CGCCCACGTAAATCTGGTTT
58.838
50.000
0.00
0.00
33.53
3.27
379
380
1.303091
GCGCCCACGTAAATCTGGTT
61.303
55.000
0.00
0.00
42.83
3.67
381
382
2.808958
CGCGCCCACGTAAATCTGG
61.809
63.158
0.00
0.00
42.83
3.86
383
384
2.510691
CCGCGCCCACGTAAATCT
60.511
61.111
0.00
0.00
42.83
2.40
406
407
3.773630
CATCACGCGCGTCCGTTT
61.774
61.111
35.61
13.15
39.83
3.60
417
418
2.279517
GAGTAGGCGCCCATCACG
60.280
66.667
26.15
0.00
0.00
4.35
418
419
2.109181
GGAGTAGGCGCCCATCAC
59.891
66.667
26.15
16.24
0.00
3.06
419
420
2.041922
AGGAGTAGGCGCCCATCA
60.042
61.111
26.15
2.56
34.94
3.07
420
421
2.737830
GAGGAGTAGGCGCCCATC
59.262
66.667
26.15
18.58
34.94
3.51
421
422
2.844839
GGAGGAGTAGGCGCCCAT
60.845
66.667
26.15
9.54
34.94
4.00
423
424
4.862823
AGGGAGGAGTAGGCGCCC
62.863
72.222
26.15
9.10
39.12
6.13
424
425
2.764547
AAGGGAGGAGTAGGCGCC
60.765
66.667
21.89
21.89
34.56
6.53
425
426
2.501610
CAAGGGAGGAGTAGGCGC
59.498
66.667
0.00
0.00
0.00
6.53
426
427
3.095347
GCCAAGGGAGGAGTAGGCG
62.095
68.421
0.00
0.00
31.88
5.52
427
428
2.747443
GGCCAAGGGAGGAGTAGGC
61.747
68.421
0.00
0.00
41.29
3.93
428
429
1.003573
AGGCCAAGGGAGGAGTAGG
59.996
63.158
5.01
0.00
0.00
3.18
429
430
1.977293
GCAGGCCAAGGGAGGAGTAG
61.977
65.000
5.01
0.00
0.00
2.57
430
431
1.995626
GCAGGCCAAGGGAGGAGTA
60.996
63.158
5.01
0.00
0.00
2.59
431
432
3.334054
GCAGGCCAAGGGAGGAGT
61.334
66.667
5.01
0.00
0.00
3.85
432
433
4.120755
GGCAGGCCAAGGGAGGAG
62.121
72.222
5.01
0.00
35.81
3.69
436
437
3.650950
GACTGGCAGGCCAAGGGA
61.651
66.667
20.34
0.00
46.63
4.20
454
455
1.876497
ATGATTGTGGTTGTGCCGCC
61.876
55.000
0.00
0.00
46.96
6.13
456
457
2.327568
GAAATGATTGTGGTTGTGCCG
58.672
47.619
0.00
0.00
41.21
5.69
457
458
2.612721
GGGAAATGATTGTGGTTGTGCC
60.613
50.000
0.00
0.00
37.90
5.01
458
459
2.612721
GGGGAAATGATTGTGGTTGTGC
60.613
50.000
0.00
0.00
0.00
4.57
459
460
2.028203
GGGGGAAATGATTGTGGTTGTG
60.028
50.000
0.00
0.00
0.00
3.33
460
461
2.256306
GGGGGAAATGATTGTGGTTGT
58.744
47.619
0.00
0.00
0.00
3.32
478
479
1.344438
GAGCTTTTTGGGAAAGTGGGG
59.656
52.381
0.00
0.00
0.00
4.96
479
480
1.344438
GGAGCTTTTTGGGAAAGTGGG
59.656
52.381
0.00
0.00
0.00
4.61
480
481
1.344438
GGGAGCTTTTTGGGAAAGTGG
59.656
52.381
0.00
0.00
0.00
4.00
481
482
1.000274
CGGGAGCTTTTTGGGAAAGTG
60.000
52.381
0.00
0.00
0.00
3.16
482
483
1.328279
CGGGAGCTTTTTGGGAAAGT
58.672
50.000
0.00
0.00
0.00
2.66
519
520
3.499737
GTCGTCCATGGCAAGCGG
61.500
66.667
6.96
0.00
0.00
5.52
521
522
2.742372
ACGTCGTCCATGGCAAGC
60.742
61.111
6.96
0.00
0.00
4.01
522
523
3.027170
GCACGTCGTCCATGGCAAG
62.027
63.158
6.96
0.27
0.00
4.01
524
525
4.002506
AGCACGTCGTCCATGGCA
62.003
61.111
6.96
0.00
0.00
4.92
528
529
2.261671
GGTCAGCACGTCGTCCAT
59.738
61.111
0.00
0.00
0.00
3.41
529
530
3.986006
GGGTCAGCACGTCGTCCA
61.986
66.667
0.00
0.00
0.00
4.02
530
531
3.628280
GAGGGTCAGCACGTCGTCC
62.628
68.421
0.00
0.00
0.00
4.79
531
532
2.126424
GAGGGTCAGCACGTCGTC
60.126
66.667
0.00
0.00
0.00
4.20
532
533
4.039357
CGAGGGTCAGCACGTCGT
62.039
66.667
0.00
0.00
40.23
4.34
533
534
3.733960
TCGAGGGTCAGCACGTCG
61.734
66.667
0.00
0.00
44.71
5.12
534
535
2.126424
GTCGAGGGTCAGCACGTC
60.126
66.667
0.00
0.00
0.00
4.34
535
536
4.039357
CGTCGAGGGTCAGCACGT
62.039
66.667
0.00
0.00
0.00
4.49
558
559
3.855853
GAAGGAGGCGAGGGAGGC
61.856
72.222
0.00
0.00
0.00
4.70
559
560
3.532155
CGAAGGAGGCGAGGGAGG
61.532
72.222
0.00
0.00
0.00
4.30
578
579
3.234630
TTTGGCGACGGAGGTGAGG
62.235
63.158
0.00
0.00
0.00
3.86
579
580
1.738099
CTTTGGCGACGGAGGTGAG
60.738
63.158
0.00
0.00
0.00
3.51
580
581
2.342279
CTTTGGCGACGGAGGTGA
59.658
61.111
0.00
0.00
0.00
4.02
581
582
2.742372
CCTTTGGCGACGGAGGTG
60.742
66.667
1.64
0.00
32.14
4.00
2656
3981
1.504359
CGAGCCGTCCTTGTGTTTAA
58.496
50.000
0.00
0.00
0.00
1.52
3095
4421
2.675348
GAGAAGTCGCTTTCCATGGAAG
59.325
50.000
25.69
19.95
35.38
3.46
Based at the University of Bristol with support from BBSRC .
AutoCloner maintained by Alex Coulton.