Multiple sequence alignment - TraesCS4D01G323700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G323700 chr4D 100.000 4651 0 0 1 4651 484779643 484774993 0.000000e+00 8589.0
1 TraesCS4D01G323700 chr4B 93.325 1648 77 14 2073 3715 617858579 617856960 0.000000e+00 2403.0
2 TraesCS4D01G323700 chr4B 94.084 524 26 5 1543 2063 617859203 617858682 0.000000e+00 791.0
3 TraesCS4D01G323700 chr4B 89.764 381 16 4 934 1294 617859773 617859396 2.530000e-127 466.0
4 TraesCS4D01G323700 chr4B 87.745 204 6 10 1320 1510 617859404 617859207 2.180000e-53 220.0
5 TraesCS4D01G323700 chr5A 92.456 1405 84 14 2187 3589 665823650 665822266 0.000000e+00 1988.0
6 TraesCS4D01G323700 chr5A 90.113 1062 63 20 3626 4651 665822270 665821215 0.000000e+00 1341.0
7 TraesCS4D01G323700 chr5A 85.744 947 49 25 934 1814 665824834 665823908 0.000000e+00 922.0
8 TraesCS4D01G323700 chr5A 97.717 219 5 0 1863 2081 665823908 665823690 1.220000e-100 377.0
9 TraesCS4D01G323700 chr5A 86.626 329 37 2 3716 4044 475466974 475467295 1.590000e-94 357.0
10 TraesCS4D01G323700 chr5A 89.547 287 17 4 237 520 665825102 665824826 7.400000e-93 351.0
11 TraesCS4D01G323700 chr5A 87.500 256 15 5 1 240 665826146 665825892 3.540000e-71 279.0
12 TraesCS4D01G323700 chr1A 81.377 1525 214 33 1950 3421 54076693 54075186 0.000000e+00 1179.0
13 TraesCS4D01G323700 chr1D 83.397 1319 151 30 2160 3421 55670425 55669118 0.000000e+00 1160.0
14 TraesCS4D01G323700 chr1D 92.381 420 26 4 520 937 161031387 161030972 1.110000e-165 593.0
15 TraesCS4D01G323700 chr1B 83.232 1318 157 25 2159 3421 90994104 90992796 0.000000e+00 1151.0
16 TraesCS4D01G323700 chrUn 93.990 416 21 3 521 934 91570893 91571306 1.100000e-175 627.0
17 TraesCS4D01G323700 chr6D 93.301 418 23 3 521 935 2098956 2099371 3.080000e-171 612.0
18 TraesCS4D01G323700 chr6D 92.363 419 29 2 517 934 72443530 72443946 1.110000e-165 593.0
19 TraesCS4D01G323700 chr3A 92.891 422 26 3 513 933 745462644 745462226 1.110000e-170 610.0
20 TraesCS4D01G323700 chr2D 93.253 415 25 1 520 934 481968923 481969334 3.980000e-170 608.0
21 TraesCS4D01G323700 chr7D 92.381 420 25 6 520 935 117216810 117216394 4.010000e-165 592.0
22 TraesCS4D01G323700 chr6B 92.530 415 28 3 521 934 505322321 505321909 4.010000e-165 592.0
23 TraesCS4D01G323700 chr7B 92.308 416 28 3 519 933 610351368 610350956 5.180000e-164 588.0
24 TraesCS4D01G323700 chr5D 86.018 329 39 2 3716 4044 372109053 372109374 3.440000e-91 346.0
25 TraesCS4D01G323700 chr5B 86.018 329 39 2 3716 4044 442413746 442414067 3.440000e-91 346.0
26 TraesCS4D01G323700 chr5B 94.737 38 1 1 4163 4200 687732529 687732493 1.810000e-04 58.4
27 TraesCS4D01G323700 chr4A 93.878 49 3 0 4047 4095 572851261 572851213 1.790000e-09 75.0
28 TraesCS4D01G323700 chr4A 88.000 50 3 3 4171 4220 577107469 577107423 6.500000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G323700 chr4D 484774993 484779643 4650 True 8589.000000 8589 100.000000 1 4651 1 chr4D.!!$R1 4650
1 TraesCS4D01G323700 chr4B 617856960 617859773 2813 True 970.000000 2403 91.229500 934 3715 4 chr4B.!!$R1 2781
2 TraesCS4D01G323700 chr5A 665821215 665826146 4931 True 876.333333 1988 90.512833 1 4651 6 chr5A.!!$R1 4650
3 TraesCS4D01G323700 chr1A 54075186 54076693 1507 True 1179.000000 1179 81.377000 1950 3421 1 chr1A.!!$R1 1471
4 TraesCS4D01G323700 chr1D 55669118 55670425 1307 True 1160.000000 1160 83.397000 2160 3421 1 chr1D.!!$R1 1261
5 TraesCS4D01G323700 chr1B 90992796 90994104 1308 True 1151.000000 1151 83.232000 2159 3421 1 chr1B.!!$R1 1262

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
903 1714 0.109781 GCAAGGCACACGGTAACATG 60.110 55.0 0.00 0.0 0.00 3.21 F
907 1718 0.312416 GGCACACGGTAACATGCAAA 59.688 50.0 0.00 0.0 40.39 3.68 F
2767 3790 0.748450 CCATGGCCATTCACATGACC 59.252 55.0 17.92 0.0 45.55 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2201 3188 0.180406 GGGCGGTGATGAAGTATGGT 59.820 55.0 0.00 0.00 0.00 3.55 R
2771 3794 2.101415 TCCGAGTCACCATGATCATGAC 59.899 50.0 32.71 24.31 42.54 3.06 R
3871 4950 0.098552 TTGTTGCTGCAGTTGTCGTG 59.901 50.0 16.64 0.00 0.00 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 41 9.823647 TGAAAACCAACAATATAGCAAAGAAAA 57.176 25.926 0.00 0.00 0.00 2.29
92 94 8.262601 AGAACAGAAAAGGACCCAATAAAAAT 57.737 30.769 0.00 0.00 0.00 1.82
104 111 7.602644 GGACCCAATAAAAATGGAGAAAGAAAC 59.397 37.037 0.00 0.00 40.56 2.78
194 210 3.320826 CGGAAAACCCAAGAGGAAAACAT 59.679 43.478 0.00 0.00 39.89 2.71
264 1073 5.539048 ACTGTACAGAGCACGAAAAATACT 58.461 37.500 29.30 0.00 0.00 2.12
265 1074 5.989777 ACTGTACAGAGCACGAAAAATACTT 59.010 36.000 29.30 0.00 0.00 2.24
266 1075 6.145696 ACTGTACAGAGCACGAAAAATACTTC 59.854 38.462 29.30 0.00 0.00 3.01
267 1076 5.986741 TGTACAGAGCACGAAAAATACTTCA 59.013 36.000 0.00 0.00 0.00 3.02
268 1077 5.597813 ACAGAGCACGAAAAATACTTCAG 57.402 39.130 0.00 0.00 0.00 3.02
269 1078 5.297547 ACAGAGCACGAAAAATACTTCAGA 58.702 37.500 0.00 0.00 0.00 3.27
270 1079 5.177696 ACAGAGCACGAAAAATACTTCAGAC 59.822 40.000 0.00 0.00 0.00 3.51
271 1080 4.386049 AGAGCACGAAAAATACTTCAGACG 59.614 41.667 0.00 0.00 0.00 4.18
272 1081 4.304110 AGCACGAAAAATACTTCAGACGA 58.696 39.130 0.00 0.00 0.00 4.20
297 1106 5.127491 ACAGAAGCTAGTCTCGCTATAAGT 58.873 41.667 0.00 0.00 36.56 2.24
301 1110 7.171848 CAGAAGCTAGTCTCGCTATAAGTAAGA 59.828 40.741 0.00 0.00 36.56 2.10
322 1131 1.641577 ATAGCTCTCGCGGTTGAAAC 58.358 50.000 6.13 0.00 42.32 2.78
345 1154 5.645497 ACTGGATGAAGCTTTAACTCATGAC 59.355 40.000 0.00 0.00 0.00 3.06
378 1187 1.130373 CCGATGTGAATGGGACGTTTG 59.870 52.381 0.00 0.00 0.00 2.93
416 1225 4.408596 TGGAACAAAGAAAAATTCCAGGCT 59.591 37.500 0.42 0.00 44.43 4.58
429 1238 1.112315 CCAGGCTGGATAGACGCTCT 61.112 60.000 29.96 0.00 40.96 4.09
451 1260 6.817184 TCTCGTAATCATTTTCTTAGAGGGG 58.183 40.000 0.00 0.00 0.00 4.79
458 1267 1.486211 TTTCTTAGAGGGGGAGAGCG 58.514 55.000 0.00 0.00 0.00 5.03
470 1279 0.179081 GGAGAGCGGTGGACAATACC 60.179 60.000 0.00 0.00 34.81 2.73
479 1288 2.554344 GGTGGACAATACCCTCTTGCAA 60.554 50.000 0.00 0.00 31.89 4.08
480 1289 2.749621 GTGGACAATACCCTCTTGCAAG 59.250 50.000 20.81 20.81 0.00 4.01
481 1290 1.745653 GGACAATACCCTCTTGCAAGC 59.254 52.381 21.99 3.29 0.00 4.01
484 1293 2.224867 ACAATACCCTCTTGCAAGCAGT 60.225 45.455 21.99 18.74 0.00 4.40
485 1294 2.119801 ATACCCTCTTGCAAGCAGTG 57.880 50.000 21.99 12.96 0.00 3.66
487 1296 2.633509 CCCTCTTGCAAGCAGTGGC 61.634 63.158 21.99 0.00 41.61 5.01
490 1301 2.599578 CTTGCAAGCAGTGGCCCT 60.600 61.111 14.65 0.00 42.56 5.19
500 1311 4.008933 GTGGCCCTGAGTCGTGCT 62.009 66.667 0.00 0.00 0.00 4.40
504 1315 4.767255 CCCTGAGTCGTGCTGCCC 62.767 72.222 0.00 0.00 0.00 5.36
519 1330 2.274432 CCCCGTTAGGCCCTTTCC 59.726 66.667 0.00 0.00 35.76 3.13
520 1331 2.124860 CCCGTTAGGCCCTTTCCG 60.125 66.667 0.00 0.00 35.76 4.30
521 1332 2.124860 CCGTTAGGCCCTTTCCGG 60.125 66.667 0.00 0.00 0.00 5.14
522 1333 2.662070 CCGTTAGGCCCTTTCCGGA 61.662 63.158 0.00 0.00 37.66 5.14
523 1334 1.449070 CGTTAGGCCCTTTCCGGAC 60.449 63.158 1.83 0.00 33.16 4.79
524 1335 1.681076 GTTAGGCCCTTTCCGGACA 59.319 57.895 1.83 0.00 30.70 4.02
525 1336 0.392595 GTTAGGCCCTTTCCGGACAG 60.393 60.000 10.84 10.84 30.70 3.51
526 1337 0.545787 TTAGGCCCTTTCCGGACAGA 60.546 55.000 19.38 0.00 30.70 3.41
527 1338 0.976073 TAGGCCCTTTCCGGACAGAG 60.976 60.000 19.38 7.01 30.70 3.35
528 1339 2.291043 GGCCCTTTCCGGACAGAGA 61.291 63.158 19.38 0.00 33.16 3.10
529 1340 1.627297 GGCCCTTTCCGGACAGAGAT 61.627 60.000 19.38 0.00 33.16 2.75
530 1341 0.179070 GCCCTTTCCGGACAGAGATC 60.179 60.000 19.38 1.43 33.16 2.75
531 1342 1.195115 CCCTTTCCGGACAGAGATCA 58.805 55.000 19.38 0.00 33.16 2.92
532 1343 1.137872 CCCTTTCCGGACAGAGATCAG 59.862 57.143 19.38 0.86 33.16 2.90
533 1344 1.137872 CCTTTCCGGACAGAGATCAGG 59.862 57.143 19.38 3.78 35.44 3.86
534 1345 1.827969 CTTTCCGGACAGAGATCAGGT 59.172 52.381 12.49 0.00 35.61 4.00
535 1346 1.186200 TTCCGGACAGAGATCAGGTG 58.814 55.000 1.83 0.00 35.61 4.00
536 1347 0.331616 TCCGGACAGAGATCAGGTGA 59.668 55.000 0.00 0.00 35.61 4.02
537 1348 0.457851 CCGGACAGAGATCAGGTGAC 59.542 60.000 0.00 0.00 0.00 3.67
538 1349 1.177401 CGGACAGAGATCAGGTGACA 58.823 55.000 0.00 0.00 0.00 3.58
539 1350 1.753649 CGGACAGAGATCAGGTGACAT 59.246 52.381 0.00 0.00 0.00 3.06
540 1351 2.480932 CGGACAGAGATCAGGTGACATG 60.481 54.545 0.00 0.00 0.00 3.21
541 1352 2.548875 GACAGAGATCAGGTGACATGC 58.451 52.381 0.00 0.00 0.00 4.06
542 1353 1.904537 ACAGAGATCAGGTGACATGCA 59.095 47.619 0.00 0.00 0.00 3.96
543 1354 2.277969 CAGAGATCAGGTGACATGCAC 58.722 52.381 10.63 10.63 46.98 4.57
560 1371 3.343972 CCTTTGCAGGTCACCGTG 58.656 61.111 0.00 0.00 35.06 4.94
561 1372 1.525995 CCTTTGCAGGTCACCGTGT 60.526 57.895 0.00 0.00 35.06 4.49
562 1373 1.648720 CTTTGCAGGTCACCGTGTG 59.351 57.895 0.00 0.00 34.45 3.82
563 1374 2.392613 CTTTGCAGGTCACCGTGTGC 62.393 60.000 0.00 0.00 36.42 4.57
564 1375 4.927782 TGCAGGTCACCGTGTGCC 62.928 66.667 4.17 8.05 34.91 5.01
565 1376 4.626081 GCAGGTCACCGTGTGCCT 62.626 66.667 10.29 10.29 39.37 4.75
566 1377 2.111043 CAGGTCACCGTGTGCCTT 59.889 61.111 12.53 0.40 37.74 4.35
567 1378 2.111043 AGGTCACCGTGTGCCTTG 59.889 61.111 10.29 0.00 36.97 3.61
568 1379 3.660111 GGTCACCGTGTGCCTTGC 61.660 66.667 0.00 0.00 32.98 4.01
569 1380 4.012895 GTCACCGTGTGCCTTGCG 62.013 66.667 0.00 0.00 32.98 4.85
580 1391 2.749839 CCTTGCGGCCCGAATTCA 60.750 61.111 7.68 0.00 0.00 2.57
581 1392 2.339556 CCTTGCGGCCCGAATTCAA 61.340 57.895 7.68 0.00 0.00 2.69
582 1393 1.583986 CTTGCGGCCCGAATTCAAA 59.416 52.632 7.68 0.00 0.00 2.69
583 1394 0.173255 CTTGCGGCCCGAATTCAAAT 59.827 50.000 7.68 0.00 0.00 2.32
584 1395 0.605589 TTGCGGCCCGAATTCAAATT 59.394 45.000 7.68 0.00 0.00 1.82
585 1396 0.605589 TGCGGCCCGAATTCAAATTT 59.394 45.000 7.68 0.00 0.00 1.82
586 1397 1.819288 TGCGGCCCGAATTCAAATTTA 59.181 42.857 7.68 0.00 0.00 1.40
587 1398 2.231478 TGCGGCCCGAATTCAAATTTAA 59.769 40.909 7.68 0.00 0.00 1.52
588 1399 3.254892 GCGGCCCGAATTCAAATTTAAA 58.745 40.909 7.68 0.00 0.00 1.52
589 1400 3.061563 GCGGCCCGAATTCAAATTTAAAC 59.938 43.478 7.68 0.00 0.00 2.01
590 1401 4.238514 CGGCCCGAATTCAAATTTAAACA 58.761 39.130 0.00 0.00 0.00 2.83
591 1402 4.867608 CGGCCCGAATTCAAATTTAAACAT 59.132 37.500 0.00 0.00 0.00 2.71
592 1403 5.350091 CGGCCCGAATTCAAATTTAAACATT 59.650 36.000 0.00 0.00 0.00 2.71
593 1404 6.541969 GGCCCGAATTCAAATTTAAACATTG 58.458 36.000 6.22 8.56 0.00 2.82
594 1405 6.020984 GCCCGAATTCAAATTTAAACATTGC 58.979 36.000 6.22 0.00 0.00 3.56
595 1406 6.239945 CCCGAATTCAAATTTAAACATTGCG 58.760 36.000 6.22 7.85 0.00 4.85
596 1407 6.090088 CCCGAATTCAAATTTAAACATTGCGA 59.910 34.615 6.22 3.66 0.00 5.10
597 1408 7.359598 CCCGAATTCAAATTTAAACATTGCGAA 60.360 33.333 6.22 2.95 0.00 4.70
598 1409 8.006590 CCGAATTCAAATTTAAACATTGCGAAA 58.993 29.630 6.22 0.00 0.00 3.46
599 1410 9.362911 CGAATTCAAATTTAAACATTGCGAAAA 57.637 25.926 6.22 2.16 0.00 2.29
630 1441 3.945981 AAATCATGCATGTTCACAGCA 57.054 38.095 25.43 4.73 43.14 4.41
631 1442 2.933495 ATCATGCATGTTCACAGCAC 57.067 45.000 25.43 0.00 41.60 4.40
632 1443 1.606903 TCATGCATGTTCACAGCACA 58.393 45.000 25.43 0.00 41.60 4.57
633 1444 2.164338 TCATGCATGTTCACAGCACAT 58.836 42.857 25.43 0.00 41.60 3.21
634 1445 3.345414 TCATGCATGTTCACAGCACATA 58.655 40.909 25.43 0.00 41.60 2.29
635 1446 3.949113 TCATGCATGTTCACAGCACATAT 59.051 39.130 25.43 0.00 41.60 1.78
636 1447 4.399934 TCATGCATGTTCACAGCACATATT 59.600 37.500 25.43 0.00 41.60 1.28
637 1448 5.589452 TCATGCATGTTCACAGCACATATTA 59.411 36.000 25.43 0.00 41.60 0.98
638 1449 5.893897 TGCATGTTCACAGCACATATTAA 57.106 34.783 0.00 0.00 32.88 1.40
639 1450 5.882553 TGCATGTTCACAGCACATATTAAG 58.117 37.500 0.00 0.00 32.88 1.85
640 1451 5.647225 TGCATGTTCACAGCACATATTAAGA 59.353 36.000 0.00 0.00 32.88 2.10
641 1452 6.319405 TGCATGTTCACAGCACATATTAAGAT 59.681 34.615 0.00 0.00 32.88 2.40
642 1453 7.498570 TGCATGTTCACAGCACATATTAAGATA 59.501 33.333 0.00 0.00 32.88 1.98
643 1454 8.344831 GCATGTTCACAGCACATATTAAGATAA 58.655 33.333 0.00 0.00 32.88 1.75
644 1455 9.655769 CATGTTCACAGCACATATTAAGATAAC 57.344 33.333 0.00 0.00 32.88 1.89
645 1456 8.208718 TGTTCACAGCACATATTAAGATAACC 57.791 34.615 0.00 0.00 0.00 2.85
646 1457 7.282224 TGTTCACAGCACATATTAAGATAACCC 59.718 37.037 0.00 0.00 0.00 4.11
647 1458 6.296026 TCACAGCACATATTAAGATAACCCC 58.704 40.000 0.00 0.00 0.00 4.95
648 1459 6.101150 TCACAGCACATATTAAGATAACCCCT 59.899 38.462 0.00 0.00 0.00 4.79
649 1460 7.291416 TCACAGCACATATTAAGATAACCCCTA 59.709 37.037 0.00 0.00 0.00 3.53
650 1461 7.936847 CACAGCACATATTAAGATAACCCCTAA 59.063 37.037 0.00 0.00 0.00 2.69
651 1462 8.499406 ACAGCACATATTAAGATAACCCCTAAA 58.501 33.333 0.00 0.00 0.00 1.85
652 1463 9.349713 CAGCACATATTAAGATAACCCCTAAAA 57.650 33.333 0.00 0.00 0.00 1.52
653 1464 9.930158 AGCACATATTAAGATAACCCCTAAAAA 57.070 29.630 0.00 0.00 0.00 1.94
681 1492 9.859427 TCCAGATCAAAATTTGAAACATACATC 57.141 29.630 12.75 3.34 43.95 3.06
682 1493 8.800972 CCAGATCAAAATTTGAAACATACATCG 58.199 33.333 12.75 1.05 43.95 3.84
683 1494 9.558648 CAGATCAAAATTTGAAACATACATCGA 57.441 29.630 12.75 0.00 43.95 3.59
684 1495 9.778993 AGATCAAAATTTGAAACATACATCGAG 57.221 29.630 12.75 0.00 43.95 4.04
685 1496 9.773328 GATCAAAATTTGAAACATACATCGAGA 57.227 29.630 12.75 0.00 43.95 4.04
687 1498 9.611284 TCAAAATTTGAAACATACATCGAGAAG 57.389 29.630 5.87 0.00 36.59 2.85
688 1499 9.398170 CAAAATTTGAAACATACATCGAGAAGT 57.602 29.630 0.00 0.00 0.00 3.01
733 1544 9.291664 GTGAATAGTATATAGAGAACCATTCGC 57.708 37.037 0.00 0.00 34.02 4.70
734 1545 9.020731 TGAATAGTATATAGAGAACCATTCGCA 57.979 33.333 0.00 0.00 34.02 5.10
735 1546 9.856488 GAATAGTATATAGAGAACCATTCGCAA 57.144 33.333 0.00 0.00 34.02 4.85
736 1547 9.640963 AATAGTATATAGAGAACCATTCGCAAC 57.359 33.333 0.00 0.00 34.02 4.17
737 1548 7.291411 AGTATATAGAGAACCATTCGCAACT 57.709 36.000 0.00 0.00 34.02 3.16
738 1549 8.405418 AGTATATAGAGAACCATTCGCAACTA 57.595 34.615 0.00 0.00 34.02 2.24
739 1550 9.026121 AGTATATAGAGAACCATTCGCAACTAT 57.974 33.333 0.00 0.00 34.02 2.12
740 1551 9.640963 GTATATAGAGAACCATTCGCAACTATT 57.359 33.333 0.00 0.00 34.02 1.73
741 1552 8.764524 ATATAGAGAACCATTCGCAACTATTC 57.235 34.615 0.00 0.00 34.02 1.75
742 1553 4.832248 AGAGAACCATTCGCAACTATTCA 58.168 39.130 0.00 0.00 34.02 2.57
743 1554 5.431765 AGAGAACCATTCGCAACTATTCAT 58.568 37.500 0.00 0.00 34.02 2.57
744 1555 5.295292 AGAGAACCATTCGCAACTATTCATG 59.705 40.000 0.00 0.00 34.02 3.07
745 1556 5.185454 AGAACCATTCGCAACTATTCATGA 58.815 37.500 0.00 0.00 34.02 3.07
746 1557 4.882671 ACCATTCGCAACTATTCATGAC 57.117 40.909 0.00 0.00 0.00 3.06
747 1558 4.260985 ACCATTCGCAACTATTCATGACA 58.739 39.130 0.00 0.00 0.00 3.58
748 1559 4.333649 ACCATTCGCAACTATTCATGACAG 59.666 41.667 0.00 0.00 0.00 3.51
749 1560 4.571984 CCATTCGCAACTATTCATGACAGA 59.428 41.667 9.90 0.00 0.00 3.41
750 1561 5.237996 CCATTCGCAACTATTCATGACAGAT 59.762 40.000 9.90 0.00 0.00 2.90
751 1562 6.238566 CCATTCGCAACTATTCATGACAGATT 60.239 38.462 9.90 0.00 0.00 2.40
752 1563 6.741992 TTCGCAACTATTCATGACAGATTT 57.258 33.333 9.90 0.00 0.00 2.17
753 1564 6.349973 TCGCAACTATTCATGACAGATTTC 57.650 37.500 9.90 0.00 0.00 2.17
754 1565 6.108687 TCGCAACTATTCATGACAGATTTCT 58.891 36.000 9.90 0.00 0.00 2.52
755 1566 6.595326 TCGCAACTATTCATGACAGATTTCTT 59.405 34.615 9.90 0.00 0.00 2.52
756 1567 7.119699 TCGCAACTATTCATGACAGATTTCTTT 59.880 33.333 9.90 0.00 0.00 2.52
757 1568 7.752239 CGCAACTATTCATGACAGATTTCTTTT 59.248 33.333 9.90 0.00 0.00 2.27
758 1569 9.415544 GCAACTATTCATGACAGATTTCTTTTT 57.584 29.630 9.90 0.00 0.00 1.94
790 1601 9.611284 TCTTCTCGATGTATGTTTTGAATTTTG 57.389 29.630 0.00 0.00 0.00 2.44
791 1602 9.611284 CTTCTCGATGTATGTTTTGAATTTTGA 57.389 29.630 0.00 0.00 0.00 2.69
793 1604 9.773328 TCTCGATGTATGTTTTGAATTTTGATC 57.227 29.630 0.00 0.00 0.00 2.92
794 1605 9.778993 CTCGATGTATGTTTTGAATTTTGATCT 57.221 29.630 0.00 0.00 0.00 2.75
795 1606 9.558648 TCGATGTATGTTTTGAATTTTGATCTG 57.441 29.630 0.00 0.00 0.00 2.90
796 1607 9.558648 CGATGTATGTTTTGAATTTTGATCTGA 57.441 29.630 0.00 0.00 0.00 3.27
825 1636 9.930158 TTTTTAGGGGTTATCTTAATATGTGCT 57.070 29.630 0.00 0.00 0.00 4.40
826 1637 8.918202 TTTAGGGGTTATCTTAATATGTGCTG 57.082 34.615 0.00 0.00 0.00 4.41
827 1638 6.515512 AGGGGTTATCTTAATATGTGCTGT 57.484 37.500 0.00 0.00 0.00 4.40
828 1639 6.299141 AGGGGTTATCTTAATATGTGCTGTG 58.701 40.000 0.00 0.00 0.00 3.66
829 1640 6.101150 AGGGGTTATCTTAATATGTGCTGTGA 59.899 38.462 0.00 0.00 0.00 3.58
830 1641 6.770785 GGGGTTATCTTAATATGTGCTGTGAA 59.229 38.462 0.00 0.00 0.00 3.18
831 1642 7.255139 GGGGTTATCTTAATATGTGCTGTGAAC 60.255 40.741 0.00 0.00 0.00 3.18
832 1643 7.282224 GGGTTATCTTAATATGTGCTGTGAACA 59.718 37.037 0.00 0.00 0.00 3.18
833 1644 8.840321 GGTTATCTTAATATGTGCTGTGAACAT 58.160 33.333 0.00 0.00 41.14 2.71
836 1647 8.962884 ATCTTAATATGTGCTGTGAACATACA 57.037 30.769 0.92 3.97 41.88 2.29
837 1648 8.962884 TCTTAATATGTGCTGTGAACATACAT 57.037 30.769 14.18 14.18 41.88 2.29
838 1649 8.829612 TCTTAATATGTGCTGTGAACATACATG 58.170 33.333 17.12 0.00 41.88 3.21
839 1650 8.729805 TTAATATGTGCTGTGAACATACATGA 57.270 30.769 17.12 7.52 41.88 3.07
840 1651 7.812690 AATATGTGCTGTGAACATACATGAT 57.187 32.000 17.12 8.12 41.88 2.45
841 1652 7.812690 ATATGTGCTGTGAACATACATGATT 57.187 32.000 17.12 0.00 41.88 2.57
842 1653 5.963176 TGTGCTGTGAACATACATGATTT 57.037 34.783 0.00 0.00 0.00 2.17
843 1654 6.330004 TGTGCTGTGAACATACATGATTTT 57.670 33.333 0.00 0.00 0.00 1.82
844 1655 6.747125 TGTGCTGTGAACATACATGATTTTT 58.253 32.000 0.00 0.00 0.00 1.94
879 1690 8.910599 TTTCGCAATGTTTAAATTTGAATTCG 57.089 26.923 14.55 9.81 0.00 3.34
880 1691 7.043454 TCGCAATGTTTAAATTTGAATTCGG 57.957 32.000 14.55 0.00 0.00 4.30
881 1692 6.863645 TCGCAATGTTTAAATTTGAATTCGGA 59.136 30.769 14.55 0.00 0.00 4.55
882 1693 6.947680 CGCAATGTTTAAATTTGAATTCGGAC 59.052 34.615 14.55 0.00 0.00 4.79
883 1694 7.148820 CGCAATGTTTAAATTTGAATTCGGACT 60.149 33.333 14.55 0.00 0.00 3.85
884 1695 7.951565 GCAATGTTTAAATTTGAATTCGGACTG 59.048 33.333 14.55 0.00 0.00 3.51
885 1696 7.581011 ATGTTTAAATTTGAATTCGGACTGC 57.419 32.000 0.00 0.00 0.00 4.40
886 1697 6.507900 TGTTTAAATTTGAATTCGGACTGCA 58.492 32.000 0.00 0.00 0.00 4.41
887 1698 6.980978 TGTTTAAATTTGAATTCGGACTGCAA 59.019 30.769 0.00 0.00 0.00 4.08
888 1699 7.168972 TGTTTAAATTTGAATTCGGACTGCAAG 59.831 33.333 0.00 0.00 42.29 4.01
889 1700 3.855689 ATTTGAATTCGGACTGCAAGG 57.144 42.857 0.04 0.00 39.30 3.61
890 1701 0.881118 TTGAATTCGGACTGCAAGGC 59.119 50.000 0.04 0.00 46.31 4.35
897 1708 2.591715 GACTGCAAGGCACACGGT 60.592 61.111 0.00 0.00 46.27 4.83
898 1709 1.301401 GACTGCAAGGCACACGGTA 60.301 57.895 0.00 0.00 46.27 4.02
899 1710 0.882927 GACTGCAAGGCACACGGTAA 60.883 55.000 0.00 0.00 46.27 2.85
900 1711 1.164041 ACTGCAAGGCACACGGTAAC 61.164 55.000 0.00 0.00 39.30 2.50
901 1712 1.153147 TGCAAGGCACACGGTAACA 60.153 52.632 0.00 0.00 31.71 2.41
902 1713 0.536233 TGCAAGGCACACGGTAACAT 60.536 50.000 0.00 0.00 31.71 2.71
903 1714 0.109781 GCAAGGCACACGGTAACATG 60.110 55.000 0.00 0.00 0.00 3.21
904 1715 0.109781 CAAGGCACACGGTAACATGC 60.110 55.000 0.00 0.00 38.50 4.06
905 1716 0.536233 AAGGCACACGGTAACATGCA 60.536 50.000 0.00 0.00 40.39 3.96
906 1717 0.536233 AGGCACACGGTAACATGCAA 60.536 50.000 0.00 0.00 40.39 4.08
907 1718 0.312416 GGCACACGGTAACATGCAAA 59.688 50.000 0.00 0.00 40.39 3.68
908 1719 1.665735 GGCACACGGTAACATGCAAAG 60.666 52.381 0.00 0.00 40.39 2.77
909 1720 1.265635 GCACACGGTAACATGCAAAGA 59.734 47.619 0.00 0.00 38.93 2.52
910 1721 2.095263 GCACACGGTAACATGCAAAGAT 60.095 45.455 0.00 0.00 38.93 2.40
911 1722 3.491356 CACACGGTAACATGCAAAGATG 58.509 45.455 0.00 0.00 0.00 2.90
925 1736 4.288670 CAAAGATGCATGTCACCTGATC 57.711 45.455 2.46 0.00 0.00 2.92
926 1737 3.928005 AAGATGCATGTCACCTGATCT 57.072 42.857 2.46 0.00 0.00 2.75
927 1738 3.472283 AGATGCATGTCACCTGATCTC 57.528 47.619 2.46 0.00 0.00 2.75
928 1739 3.039743 AGATGCATGTCACCTGATCTCT 58.960 45.455 2.46 0.00 0.00 3.10
929 1740 2.685850 TGCATGTCACCTGATCTCTG 57.314 50.000 0.00 0.00 0.00 3.35
930 1741 1.904537 TGCATGTCACCTGATCTCTGT 59.095 47.619 0.00 0.00 0.00 3.41
931 1742 2.093816 TGCATGTCACCTGATCTCTGTC 60.094 50.000 0.00 0.00 0.00 3.51
932 1743 2.741228 GCATGTCACCTGATCTCTGTCC 60.741 54.545 0.00 0.00 0.00 4.02
951 1765 1.580845 CGCCCTTTCCTTGTCAGCAG 61.581 60.000 0.00 0.00 0.00 4.24
1008 1824 1.297819 CTACGATCCGCGCACGTAA 60.298 57.895 22.54 12.32 46.04 3.18
1094 1918 3.519579 CAAGAGCAGACACATCAGGTAG 58.480 50.000 0.00 0.00 0.00 3.18
1101 1925 3.034635 AGACACATCAGGTAGACCATCC 58.965 50.000 0.66 0.00 38.89 3.51
1171 2014 7.131565 GCCGACATCTTAGTTTAGTAGTAGTC 58.868 42.308 0.00 0.00 0.00 2.59
1219 2064 4.803908 CCCTCGCCTTCCCCTTGC 62.804 72.222 0.00 0.00 0.00 4.01
1320 2165 3.371063 GACTCGGGTCGCTCCACA 61.371 66.667 0.00 0.00 38.11 4.17
1347 2192 3.997021 CGACAGAGCTTAAGTTTGGACAT 59.003 43.478 4.02 0.00 0.00 3.06
1374 2219 1.382522 TGATGCTTTGAATCCCTCGC 58.617 50.000 0.00 0.00 0.00 5.03
1378 2223 1.819632 CTTTGAATCCCTCGCCCCG 60.820 63.158 0.00 0.00 0.00 5.73
1473 2330 6.209391 AGCCAGTATGATTTTGTAGTGCTTTT 59.791 34.615 0.00 0.00 39.69 2.27
1474 2331 6.308766 GCCAGTATGATTTTGTAGTGCTTTTG 59.691 38.462 0.00 0.00 39.69 2.44
1476 2333 7.867403 CCAGTATGATTTTGTAGTGCTTTTGTT 59.133 33.333 0.00 0.00 39.69 2.83
1478 2335 8.082242 AGTATGATTTTGTAGTGCTTTTGTTCC 58.918 33.333 0.00 0.00 0.00 3.62
1479 2336 6.463995 TGATTTTGTAGTGCTTTTGTTCCT 57.536 33.333 0.00 0.00 0.00 3.36
1480 2337 6.272318 TGATTTTGTAGTGCTTTTGTTCCTG 58.728 36.000 0.00 0.00 0.00 3.86
1481 2338 5.652994 TTTTGTAGTGCTTTTGTTCCTGT 57.347 34.783 0.00 0.00 0.00 4.00
1483 2340 6.761099 TTTGTAGTGCTTTTGTTCCTGTAA 57.239 33.333 0.00 0.00 0.00 2.41
1484 2341 6.371809 TTGTAGTGCTTTTGTTCCTGTAAG 57.628 37.500 0.00 0.00 0.00 2.34
1485 2342 5.433526 TGTAGTGCTTTTGTTCCTGTAAGT 58.566 37.500 0.00 0.00 0.00 2.24
1486 2343 6.584488 TGTAGTGCTTTTGTTCCTGTAAGTA 58.416 36.000 0.00 0.00 0.00 2.24
1487 2344 6.704493 TGTAGTGCTTTTGTTCCTGTAAGTAG 59.296 38.462 0.00 0.00 0.00 2.57
1488 2345 5.681639 AGTGCTTTTGTTCCTGTAAGTAGT 58.318 37.500 0.00 0.00 0.00 2.73
1489 2346 5.527582 AGTGCTTTTGTTCCTGTAAGTAGTG 59.472 40.000 0.00 0.00 0.00 2.74
1512 2369 6.705825 GTGGTTCAAATTGGCAAAGAACTATT 59.294 34.615 27.29 8.32 38.78 1.73
1520 2377 3.074687 TGGCAAAGAACTATTGTGGGGTA 59.925 43.478 0.00 0.00 0.00 3.69
1522 2379 3.128764 GCAAAGAACTATTGTGGGGTAGC 59.871 47.826 0.00 0.00 0.00 3.58
1530 2387 1.568504 TTGTGGGGTAGCACTAGAGG 58.431 55.000 0.00 0.00 0.00 3.69
1608 2485 5.784578 TTAGGCGTCTCTATTTCAGCATA 57.215 39.130 0.00 0.00 0.00 3.14
1630 2508 8.226448 GCATATTATAGACTTGAGTTGATGCAC 58.774 37.037 0.00 0.00 35.89 4.57
1653 2532 6.636044 CACTTTCTGCTCATTCTTTTCTGAAC 59.364 38.462 0.00 0.00 0.00 3.18
1727 2606 2.885616 AGGAGGAAAGTTCGTGGTCTA 58.114 47.619 0.00 0.00 0.00 2.59
1760 2639 5.466728 ACGCTATCATAAGTTTGTAGGCATG 59.533 40.000 0.00 0.00 0.00 4.06
1803 2686 9.013229 TCAATACATAGCAGAATGTTGACTTTT 57.987 29.630 4.91 0.00 40.52 2.27
1859 2742 9.822727 TGAGGTCATCCATTATAGTAGTATCAA 57.177 33.333 0.00 0.00 35.89 2.57
1899 2782 3.214328 GTGCCTTCTCTTTTGGAACTGA 58.786 45.455 0.00 0.00 0.00 3.41
2034 2918 7.677454 ATACCCTTACAAGTTTTACCTTTCG 57.323 36.000 0.00 0.00 0.00 3.46
2170 3157 1.335872 GCACCACCATTGTACTTGTGC 60.336 52.381 0.00 0.00 40.49 4.57
2201 3188 7.048629 TCAAATGCAGTTTTTAGATGGACAA 57.951 32.000 0.00 0.00 0.00 3.18
2439 3444 1.001624 TTGCGATCTTGACTGATGCG 58.998 50.000 0.00 0.00 0.00 4.73
2767 3790 0.748450 CCATGGCCATTCACATGACC 59.252 55.000 17.92 0.00 45.55 4.02
2768 3791 1.476477 CATGGCCATTCACATGACCA 58.524 50.000 17.92 0.00 46.13 4.02
2769 3792 2.464796 ATGGCCATTCACATGACCAT 57.535 45.000 14.09 0.00 45.84 3.55
2770 3793 1.476477 TGGCCATTCACATGACCATG 58.524 50.000 0.00 8.34 37.98 3.66
2771 3794 0.748450 GGCCATTCACATGACCATGG 59.252 55.000 11.19 11.19 42.91 3.66
2772 3795 1.477553 GCCATTCACATGACCATGGT 58.522 50.000 19.89 19.89 42.91 3.55
2885 3914 1.066929 CGTCACCACTCATCATCACCA 60.067 52.381 0.00 0.00 0.00 4.17
2976 4026 2.584608 GCTAAGGAGCCTCGCCAA 59.415 61.111 0.00 0.00 43.49 4.52
2997 4047 4.019919 ACGAAATATCAATGTGCACAGC 57.980 40.909 25.84 0.00 0.00 4.40
3117 4167 3.006217 TCATATGCACCCTCATCTTCTCG 59.994 47.826 0.00 0.00 0.00 4.04
3357 4407 2.655090 TGCTTGACAAGGTCATTGGA 57.345 45.000 16.80 0.00 42.40 3.53
3384 4434 3.056107 TCAAGGAAGAGTACAACATCGGG 60.056 47.826 0.00 0.00 0.00 5.14
3431 4500 2.171003 GTAAGGCCATTGTGCTTCCTT 58.829 47.619 5.01 0.00 40.05 3.36
3441 4510 4.572985 TTGTGCTTCCTTCACTTGAATG 57.427 40.909 0.00 0.00 35.58 2.67
3442 4511 3.819368 TGTGCTTCCTTCACTTGAATGA 58.181 40.909 0.00 0.00 35.58 2.57
3454 4524 6.279513 TCACTTGAATGAGTGTTGGTTTTT 57.720 33.333 5.09 0.00 45.64 1.94
3539 4611 1.507141 GGTGGTTCGTCCTTGCAGTG 61.507 60.000 0.00 0.00 37.07 3.66
3573 4645 0.994263 GTTTTCATGGCGCTGAATGC 59.006 50.000 12.26 5.68 35.20 3.56
3589 4661 0.968405 ATGCGCAAGGTTTTCATGGT 59.032 45.000 17.11 0.00 38.28 3.55
3591 4663 1.268352 TGCGCAAGGTTTTCATGGTAC 59.732 47.619 8.16 0.00 38.28 3.34
3593 4665 2.745281 GCGCAAGGTTTTCATGGTACTA 59.255 45.455 0.30 0.00 38.28 1.82
3594 4666 3.189702 GCGCAAGGTTTTCATGGTACTAA 59.810 43.478 0.30 0.00 38.28 2.24
3595 4667 4.320641 GCGCAAGGTTTTCATGGTACTAAA 60.321 41.667 0.30 0.00 38.28 1.85
3596 4668 5.621329 GCGCAAGGTTTTCATGGTACTAAAT 60.621 40.000 0.30 0.00 38.28 1.40
3771 4850 7.964559 CACCAAAATCATACTGTACTTCACATG 59.035 37.037 0.00 0.00 36.29 3.21
3808 4887 6.310711 GGAATTCGATTATCGGATCCTTGTAC 59.689 42.308 14.86 0.00 37.04 2.90
3812 4891 4.022242 CGATTATCGGATCCTTGTACCTGT 60.022 45.833 10.75 0.00 36.00 4.00
3855 4934 4.025040 TGATCAGTTCCTTCAGCATGTT 57.975 40.909 0.00 0.00 37.40 2.71
3871 4950 4.279420 AGCATGTTCCTTCTCCTTTTGTTC 59.721 41.667 0.00 0.00 0.00 3.18
3873 4952 5.523369 CATGTTCCTTCTCCTTTTGTTCAC 58.477 41.667 0.00 0.00 0.00 3.18
3900 4979 2.676839 CTGCAGCAACAAGGTATCTCAG 59.323 50.000 0.00 0.00 0.00 3.35
3907 4986 4.574013 GCAACAAGGTATCTCAGGAGATTG 59.426 45.833 16.30 11.74 45.31 2.67
3922 5001 2.612219 GATTGGGCGCGTTTGGATGG 62.612 60.000 8.43 0.00 0.00 3.51
3940 5019 5.549228 TGGATGGATAGCATTCAGATACCTT 59.451 40.000 0.00 0.00 0.00 3.50
3941 5020 5.879223 GGATGGATAGCATTCAGATACCTTG 59.121 44.000 0.00 0.00 0.00 3.61
3943 5022 4.006319 GGATAGCATTCAGATACCTTGCC 58.994 47.826 0.00 0.00 33.85 4.52
3947 5026 2.421952 GCATTCAGATACCTTGCCTGGA 60.422 50.000 0.00 0.00 0.00 3.86
3968 5047 2.392662 AGAAGAGCTCGATGATCCCAA 58.607 47.619 8.37 0.00 0.00 4.12
3987 5066 2.756760 CAACCCTTCCATTCTCACATGG 59.243 50.000 0.00 0.00 44.80 3.66
4063 5142 0.950836 TCGAGCATCTCTAGCAGAGC 59.049 55.000 7.94 0.00 42.04 4.09
4065 5144 0.039256 GAGCATCTCTAGCAGAGCCG 60.039 60.000 7.94 3.89 42.04 5.52
4070 5149 2.861147 TCTCTAGCAGAGCCGCTATA 57.139 50.000 0.00 0.00 43.35 1.31
4075 5154 1.807573 GCAGAGCCGCTATATCCGC 60.808 63.158 0.00 0.00 0.00 5.54
4076 5155 1.586541 CAGAGCCGCTATATCCGCA 59.413 57.895 0.00 0.00 0.00 5.69
4078 5157 1.179174 AGAGCCGCTATATCCGCACA 61.179 55.000 0.00 0.00 0.00 4.57
4081 5160 1.290324 CCGCTATATCCGCACAGCT 59.710 57.895 0.00 0.00 31.74 4.24
4083 5162 1.067743 CGCTATATCCGCACAGCTCG 61.068 60.000 0.00 0.00 31.74 5.03
4094 5173 1.882198 CACAGCTCGCAAAATAACCG 58.118 50.000 0.00 0.00 0.00 4.44
4095 5174 0.168128 ACAGCTCGCAAAATAACCGC 59.832 50.000 0.00 0.00 0.00 5.68
4130 5209 3.941483 CCGAATAGGTACCGTATATCCGT 59.059 47.826 6.18 0.00 34.51 4.69
4161 5240 4.870190 AAAAACACGGCGACCTCT 57.130 50.000 16.62 0.00 0.00 3.69
4330 5429 9.114952 TGTGAACAATTCTTTAACTGTCATGTA 57.885 29.630 0.00 0.00 0.00 2.29
4377 5476 6.377327 AAATTTGTCCCGTGATCATATGTC 57.623 37.500 0.00 0.80 0.00 3.06
4412 5511 1.452145 AATGTTCACGGGCGTTTGCT 61.452 50.000 0.00 0.00 42.25 3.91
4517 5625 5.163280 TGGTTTAGGAAGGTTATATGGACCG 60.163 44.000 4.90 0.00 42.11 4.79
4528 5636 5.451798 GGTTATATGGACCGGTTCGAACTTA 60.452 44.000 26.32 8.35 0.00 2.24
4534 5642 4.931002 TGGACCGGTTCGAACTTATTTTAG 59.069 41.667 26.32 9.75 0.00 1.85
4541 5649 7.308169 CCGGTTCGAACTTATTTTAGAACCTTT 60.308 37.037 26.32 0.00 44.69 3.11
4542 5650 7.532884 CGGTTCGAACTTATTTTAGAACCTTTG 59.467 37.037 26.32 6.60 44.69 2.77
4573 5685 8.422973 TTTTTCTTCTTTCATTTCCATGTGTG 57.577 30.769 0.00 0.00 0.00 3.82
4574 5686 6.713762 TTCTTCTTTCATTTCCATGTGTGT 57.286 33.333 0.00 0.00 0.00 3.72
4575 5687 6.075762 TCTTCTTTCATTTCCATGTGTGTG 57.924 37.500 0.00 0.00 0.00 3.82
4576 5688 5.593909 TCTTCTTTCATTTCCATGTGTGTGT 59.406 36.000 0.00 0.00 0.00 3.72
4577 5689 5.850557 TCTTTCATTTCCATGTGTGTGTT 57.149 34.783 0.00 0.00 0.00 3.32
4611 5723 4.127171 TCTCTTGGTTCTTTTCTTCACCG 58.873 43.478 0.00 0.00 31.24 4.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 8.801299 TCTTTGCTATATTGTTGGTTTTCATCA 58.199 29.630 0.00 0.00 0.00 3.07
11 12 9.638239 TTCTTTGCTATATTGTTGGTTTTCATC 57.362 29.630 0.00 0.00 0.00 2.92
63 65 2.372172 TGGGTCCTTTTCTGTTCTCTCC 59.628 50.000 0.00 0.00 0.00 3.71
71 73 7.003402 TCCATTTTTATTGGGTCCTTTTCTG 57.997 36.000 0.00 0.00 34.85 3.02
92 94 5.430007 TCTACGGTTTTGTTTCTTTCTCCA 58.570 37.500 0.00 0.00 0.00 3.86
173 189 4.955811 ATGTTTTCCTCTTGGGTTTTCC 57.044 40.909 0.00 0.00 39.75 3.13
179 195 2.985896 TCGCTATGTTTTCCTCTTGGG 58.014 47.619 0.00 0.00 0.00 4.12
194 210 1.267533 TCGCTGTAGTTGTGTTCGCTA 59.732 47.619 0.00 0.00 0.00 4.26
232 248 2.361119 TGCTCTGTACAGTATTAGGCCG 59.639 50.000 21.99 0.00 0.00 6.13
264 1073 3.413327 ACTAGCTTCTGTCTCGTCTGAA 58.587 45.455 0.00 0.00 0.00 3.02
265 1074 3.004171 GACTAGCTTCTGTCTCGTCTGA 58.996 50.000 0.00 0.00 0.00 3.27
266 1075 3.006940 AGACTAGCTTCTGTCTCGTCTG 58.993 50.000 9.86 0.00 39.04 3.51
267 1076 3.267483 GAGACTAGCTTCTGTCTCGTCT 58.733 50.000 20.50 8.85 46.10 4.18
268 1077 3.668596 GAGACTAGCTTCTGTCTCGTC 57.331 52.381 20.50 7.09 46.10 4.20
272 1081 2.122783 AGCGAGACTAGCTTCTGTCT 57.877 50.000 13.97 13.97 43.24 3.41
322 1131 5.645067 TGTCATGAGTTAAAGCTTCATCCAG 59.355 40.000 0.00 0.00 0.00 3.86
345 1154 4.028852 TCACATCGGACGAATCTAGTTG 57.971 45.455 0.00 0.00 0.00 3.16
378 1187 6.915843 TCTTTGTTCCAGTTAAATTTTCGCTC 59.084 34.615 0.00 0.00 0.00 5.03
424 1233 6.143118 CCTCTAAGAAAATGATTACGAGAGCG 59.857 42.308 0.00 0.00 44.79 5.03
429 1238 5.664006 TCCCCCTCTAAGAAAATGATTACGA 59.336 40.000 0.00 0.00 0.00 3.43
451 1260 0.179081 GGTATTGTCCACCGCTCTCC 60.179 60.000 0.00 0.00 0.00 3.71
458 1267 1.004277 TGCAAGAGGGTATTGTCCACC 59.996 52.381 0.00 0.00 35.15 4.61
470 1279 2.633509 GGCCACTGCTTGCAAGAGG 61.634 63.158 30.39 22.99 37.74 3.69
484 1293 4.007644 CAGCACGACTCAGGGCCA 62.008 66.667 6.18 0.00 42.61 5.36
487 1296 4.767255 GGGCAGCACGACTCAGGG 62.767 72.222 0.00 0.00 0.00 4.45
504 1315 2.124860 CCGGAAAGGGCCTAACGG 60.125 66.667 23.19 23.19 35.97 4.44
515 1326 1.550524 CACCTGATCTCTGTCCGGAAA 59.449 52.381 5.23 0.00 0.00 3.13
516 1327 1.186200 CACCTGATCTCTGTCCGGAA 58.814 55.000 5.23 0.00 0.00 4.30
517 1328 0.331616 TCACCTGATCTCTGTCCGGA 59.668 55.000 0.00 0.00 0.00 5.14
518 1329 0.457851 GTCACCTGATCTCTGTCCGG 59.542 60.000 0.00 0.00 0.00 5.14
519 1330 1.177401 TGTCACCTGATCTCTGTCCG 58.823 55.000 0.00 0.00 0.00 4.79
520 1331 2.741228 GCATGTCACCTGATCTCTGTCC 60.741 54.545 0.00 0.00 0.00 4.02
521 1332 2.093816 TGCATGTCACCTGATCTCTGTC 60.094 50.000 0.00 0.00 0.00 3.51
522 1333 1.904537 TGCATGTCACCTGATCTCTGT 59.095 47.619 0.00 0.00 0.00 3.41
523 1334 2.277969 GTGCATGTCACCTGATCTCTG 58.722 52.381 8.54 0.00 39.79 3.35
524 1335 2.687700 GTGCATGTCACCTGATCTCT 57.312 50.000 8.54 0.00 39.79 3.10
541 1352 1.525995 ACGGTGACCTGCAAAGGTG 60.526 57.895 1.69 0.00 43.24 4.00
542 1353 1.525995 CACGGTGACCTGCAAAGGT 60.526 57.895 0.74 0.00 46.40 3.50
543 1354 1.525995 ACACGGTGACCTGCAAAGG 60.526 57.895 16.29 0.00 0.00 3.11
544 1355 1.648720 CACACGGTGACCTGCAAAG 59.351 57.895 16.29 0.00 35.23 2.77
545 1356 2.477176 GCACACGGTGACCTGCAAA 61.477 57.895 16.29 0.00 35.23 3.68
546 1357 2.899838 GCACACGGTGACCTGCAA 60.900 61.111 16.29 0.00 35.23 4.08
547 1358 4.927782 GGCACACGGTGACCTGCA 62.928 66.667 16.29 0.00 35.14 4.41
548 1359 4.626081 AGGCACACGGTGACCTGC 62.626 66.667 21.09 16.95 43.69 4.85
549 1360 2.111043 AAGGCACACGGTGACCTG 59.889 61.111 22.02 9.82 43.69 4.00
550 1361 2.111043 CAAGGCACACGGTGACCT 59.889 61.111 16.29 17.15 43.69 3.85
551 1362 3.660111 GCAAGGCACACGGTGACC 61.660 66.667 16.29 15.16 43.69 4.02
552 1363 4.012895 CGCAAGGCACACGGTGAC 62.013 66.667 16.29 6.26 42.83 3.67
564 1375 0.173255 ATTTGAATTCGGGCCGCAAG 59.827 50.000 23.83 0.00 0.00 4.01
565 1376 0.605589 AATTTGAATTCGGGCCGCAA 59.394 45.000 23.83 16.89 0.00 4.85
566 1377 0.605589 AAATTTGAATTCGGGCCGCA 59.394 45.000 23.83 12.24 0.00 5.69
567 1378 2.570442 TAAATTTGAATTCGGGCCGC 57.430 45.000 23.83 7.83 0.00 6.53
568 1379 4.238514 TGTTTAAATTTGAATTCGGGCCG 58.761 39.130 22.51 22.51 0.00 6.13
569 1380 6.541969 CAATGTTTAAATTTGAATTCGGGCC 58.458 36.000 0.00 0.00 0.00 5.80
570 1381 6.020984 GCAATGTTTAAATTTGAATTCGGGC 58.979 36.000 14.55 0.00 0.00 6.13
571 1382 6.090088 TCGCAATGTTTAAATTTGAATTCGGG 59.910 34.615 14.55 0.00 0.00 5.14
572 1383 7.043454 TCGCAATGTTTAAATTTGAATTCGG 57.957 32.000 14.55 0.00 0.00 4.30
573 1384 8.910599 TTTCGCAATGTTTAAATTTGAATTCG 57.089 26.923 14.55 9.81 0.00 3.34
608 1419 4.449743 GTGCTGTGAACATGCATGATTTTT 59.550 37.500 32.75 16.45 39.00 1.94
609 1420 3.991773 GTGCTGTGAACATGCATGATTTT 59.008 39.130 32.75 16.83 39.00 1.82
610 1421 3.006003 TGTGCTGTGAACATGCATGATTT 59.994 39.130 32.75 17.59 39.00 2.17
611 1422 2.559231 TGTGCTGTGAACATGCATGATT 59.441 40.909 32.75 21.39 39.00 2.57
612 1423 2.164338 TGTGCTGTGAACATGCATGAT 58.836 42.857 32.75 22.02 39.00 2.45
613 1424 1.606903 TGTGCTGTGAACATGCATGA 58.393 45.000 32.75 8.19 39.00 3.07
614 1425 2.647529 ATGTGCTGTGAACATGCATG 57.352 45.000 25.09 25.09 36.89 4.06
615 1426 4.994907 AATATGTGCTGTGAACATGCAT 57.005 36.364 0.00 0.00 38.67 3.96
616 1427 5.647225 TCTTAATATGTGCTGTGAACATGCA 59.353 36.000 1.67 0.00 38.67 3.96
617 1428 6.122850 TCTTAATATGTGCTGTGAACATGC 57.877 37.500 1.67 0.00 38.67 4.06
618 1429 9.655769 GTTATCTTAATATGTGCTGTGAACATG 57.344 33.333 1.67 0.00 38.67 3.21
619 1430 8.840321 GGTTATCTTAATATGTGCTGTGAACAT 58.160 33.333 0.00 0.00 41.14 2.71
620 1431 7.282224 GGGTTATCTTAATATGTGCTGTGAACA 59.718 37.037 0.00 0.00 0.00 3.18
621 1432 7.255139 GGGGTTATCTTAATATGTGCTGTGAAC 60.255 40.741 0.00 0.00 0.00 3.18
622 1433 6.770785 GGGGTTATCTTAATATGTGCTGTGAA 59.229 38.462 0.00 0.00 0.00 3.18
623 1434 6.101150 AGGGGTTATCTTAATATGTGCTGTGA 59.899 38.462 0.00 0.00 0.00 3.58
624 1435 6.299141 AGGGGTTATCTTAATATGTGCTGTG 58.701 40.000 0.00 0.00 0.00 3.66
625 1436 6.515512 AGGGGTTATCTTAATATGTGCTGT 57.484 37.500 0.00 0.00 0.00 4.40
626 1437 8.918202 TTTAGGGGTTATCTTAATATGTGCTG 57.082 34.615 0.00 0.00 0.00 4.41
627 1438 9.930158 TTTTTAGGGGTTATCTTAATATGTGCT 57.070 29.630 0.00 0.00 0.00 4.40
655 1466 9.859427 GATGTATGTTTCAAATTTTGATCTGGA 57.141 29.630 12.39 0.00 39.84 3.86
656 1467 8.800972 CGATGTATGTTTCAAATTTTGATCTGG 58.199 33.333 12.39 0.00 39.84 3.86
657 1468 9.558648 TCGATGTATGTTTCAAATTTTGATCTG 57.441 29.630 12.39 2.96 39.84 2.90
658 1469 9.778993 CTCGATGTATGTTTCAAATTTTGATCT 57.221 29.630 12.39 1.71 39.84 2.75
659 1470 9.773328 TCTCGATGTATGTTTCAAATTTTGATC 57.227 29.630 12.39 9.48 39.84 2.92
661 1472 9.611284 CTTCTCGATGTATGTTTCAAATTTTGA 57.389 29.630 7.74 7.74 38.04 2.69
662 1473 9.398170 ACTTCTCGATGTATGTTTCAAATTTTG 57.602 29.630 2.59 2.59 0.00 2.44
707 1518 9.291664 GCGAATGGTTCTCTATATACTATTCAC 57.708 37.037 10.47 0.60 38.75 3.18
708 1519 9.020731 TGCGAATGGTTCTCTATATACTATTCA 57.979 33.333 10.47 0.00 38.75 2.57
709 1520 9.856488 TTGCGAATGGTTCTCTATATACTATTC 57.144 33.333 0.00 0.00 36.80 1.75
710 1521 9.640963 GTTGCGAATGGTTCTCTATATACTATT 57.359 33.333 0.00 0.00 0.00 1.73
711 1522 9.026121 AGTTGCGAATGGTTCTCTATATACTAT 57.974 33.333 0.00 0.00 0.00 2.12
712 1523 8.405418 AGTTGCGAATGGTTCTCTATATACTA 57.595 34.615 0.00 0.00 0.00 1.82
713 1524 7.291411 AGTTGCGAATGGTTCTCTATATACT 57.709 36.000 0.00 0.00 0.00 2.12
714 1525 9.640963 AATAGTTGCGAATGGTTCTCTATATAC 57.359 33.333 0.00 0.00 0.00 1.47
715 1526 9.856488 GAATAGTTGCGAATGGTTCTCTATATA 57.144 33.333 0.00 0.00 0.00 0.86
716 1527 8.367911 TGAATAGTTGCGAATGGTTCTCTATAT 58.632 33.333 0.00 0.00 0.00 0.86
717 1528 7.722363 TGAATAGTTGCGAATGGTTCTCTATA 58.278 34.615 0.00 0.00 0.00 1.31
718 1529 6.582636 TGAATAGTTGCGAATGGTTCTCTAT 58.417 36.000 0.00 0.00 0.00 1.98
719 1530 5.972935 TGAATAGTTGCGAATGGTTCTCTA 58.027 37.500 0.00 0.00 0.00 2.43
720 1531 4.832248 TGAATAGTTGCGAATGGTTCTCT 58.168 39.130 0.00 0.00 0.00 3.10
721 1532 5.294306 TCATGAATAGTTGCGAATGGTTCTC 59.706 40.000 0.00 0.00 0.00 2.87
722 1533 5.065218 GTCATGAATAGTTGCGAATGGTTCT 59.935 40.000 0.00 0.00 0.00 3.01
723 1534 5.163764 TGTCATGAATAGTTGCGAATGGTTC 60.164 40.000 0.00 0.00 0.00 3.62
724 1535 4.699735 TGTCATGAATAGTTGCGAATGGTT 59.300 37.500 0.00 0.00 0.00 3.67
725 1536 4.260985 TGTCATGAATAGTTGCGAATGGT 58.739 39.130 0.00 0.00 0.00 3.55
726 1537 4.571984 TCTGTCATGAATAGTTGCGAATGG 59.428 41.667 0.00 0.00 0.00 3.16
727 1538 5.723492 TCTGTCATGAATAGTTGCGAATG 57.277 39.130 0.00 0.00 0.00 2.67
728 1539 6.932356 AATCTGTCATGAATAGTTGCGAAT 57.068 33.333 0.00 0.00 0.00 3.34
729 1540 6.595326 AGAAATCTGTCATGAATAGTTGCGAA 59.405 34.615 0.00 0.00 0.00 4.70
730 1541 6.108687 AGAAATCTGTCATGAATAGTTGCGA 58.891 36.000 0.00 0.00 0.00 5.10
731 1542 6.355397 AGAAATCTGTCATGAATAGTTGCG 57.645 37.500 0.00 0.00 0.00 4.85
732 1543 8.976986 AAAAGAAATCTGTCATGAATAGTTGC 57.023 30.769 0.00 0.00 0.00 4.17
764 1575 9.611284 CAAAATTCAAAACATACATCGAGAAGA 57.389 29.630 0.00 0.00 0.00 2.87
765 1576 9.611284 TCAAAATTCAAAACATACATCGAGAAG 57.389 29.630 0.00 0.00 0.00 2.85
767 1578 9.773328 GATCAAAATTCAAAACATACATCGAGA 57.227 29.630 0.00 0.00 0.00 4.04
768 1579 9.778993 AGATCAAAATTCAAAACATACATCGAG 57.221 29.630 0.00 0.00 0.00 4.04
769 1580 9.558648 CAGATCAAAATTCAAAACATACATCGA 57.441 29.630 0.00 0.00 0.00 3.59
770 1581 9.558648 TCAGATCAAAATTCAAAACATACATCG 57.441 29.630 0.00 0.00 0.00 3.84
799 1610 9.930158 AGCACATATTAAGATAACCCCTAAAAA 57.070 29.630 0.00 0.00 0.00 1.94
800 1611 9.349713 CAGCACATATTAAGATAACCCCTAAAA 57.650 33.333 0.00 0.00 0.00 1.52
801 1612 8.499406 ACAGCACATATTAAGATAACCCCTAAA 58.501 33.333 0.00 0.00 0.00 1.85
802 1613 7.936847 CACAGCACATATTAAGATAACCCCTAA 59.063 37.037 0.00 0.00 0.00 2.69
803 1614 7.291416 TCACAGCACATATTAAGATAACCCCTA 59.709 37.037 0.00 0.00 0.00 3.53
804 1615 6.101150 TCACAGCACATATTAAGATAACCCCT 59.899 38.462 0.00 0.00 0.00 4.79
805 1616 6.296026 TCACAGCACATATTAAGATAACCCC 58.704 40.000 0.00 0.00 0.00 4.95
806 1617 7.282224 TGTTCACAGCACATATTAAGATAACCC 59.718 37.037 0.00 0.00 0.00 4.11
807 1618 8.208718 TGTTCACAGCACATATTAAGATAACC 57.791 34.615 0.00 0.00 0.00 2.85
811 1622 8.962884 TGTATGTTCACAGCACATATTAAGAT 57.037 30.769 0.00 0.00 38.93 2.40
812 1623 8.829612 CATGTATGTTCACAGCACATATTAAGA 58.170 33.333 8.78 0.00 38.93 2.10
813 1624 8.829612 TCATGTATGTTCACAGCACATATTAAG 58.170 33.333 8.78 0.41 38.93 1.85
814 1625 8.729805 TCATGTATGTTCACAGCACATATTAA 57.270 30.769 8.78 0.00 38.93 1.40
815 1626 8.907222 ATCATGTATGTTCACAGCACATATTA 57.093 30.769 8.78 1.73 38.93 0.98
816 1627 7.812690 ATCATGTATGTTCACAGCACATATT 57.187 32.000 8.78 0.49 38.93 1.28
817 1628 7.812690 AATCATGTATGTTCACAGCACATAT 57.187 32.000 8.78 3.51 38.93 1.78
818 1629 7.628769 AAATCATGTATGTTCACAGCACATA 57.371 32.000 8.78 0.00 35.20 2.29
819 1630 6.519679 AAATCATGTATGTTCACAGCACAT 57.480 33.333 0.00 4.78 36.49 3.21
820 1631 5.963176 AAATCATGTATGTTCACAGCACA 57.037 34.783 0.00 0.95 31.92 4.57
853 1664 9.362911 CGAATTCAAATTTAAACATTGCGAAAA 57.637 25.926 6.22 2.16 0.00 2.29
854 1665 8.006590 CCGAATTCAAATTTAAACATTGCGAAA 58.993 29.630 6.22 0.00 0.00 3.46
855 1666 7.382488 TCCGAATTCAAATTTAAACATTGCGAA 59.618 29.630 6.22 2.95 0.00 4.70
856 1667 6.863645 TCCGAATTCAAATTTAAACATTGCGA 59.136 30.769 6.22 3.66 0.00 5.10
857 1668 6.947680 GTCCGAATTCAAATTTAAACATTGCG 59.052 34.615 6.22 7.85 0.00 4.85
858 1669 7.951565 CAGTCCGAATTCAAATTTAAACATTGC 59.048 33.333 6.22 0.00 0.00 3.56
859 1670 7.951565 GCAGTCCGAATTCAAATTTAAACATTG 59.048 33.333 6.22 8.56 0.00 2.82
860 1671 7.655328 TGCAGTCCGAATTCAAATTTAAACATT 59.345 29.630 6.22 0.00 0.00 2.71
861 1672 7.151308 TGCAGTCCGAATTCAAATTTAAACAT 58.849 30.769 6.22 0.00 0.00 2.71
862 1673 6.507900 TGCAGTCCGAATTCAAATTTAAACA 58.492 32.000 6.22 0.00 0.00 2.83
863 1674 7.359181 CCTTGCAGTCCGAATTCAAATTTAAAC 60.359 37.037 6.22 0.00 0.00 2.01
864 1675 6.644592 CCTTGCAGTCCGAATTCAAATTTAAA 59.355 34.615 6.22 0.00 0.00 1.52
865 1676 6.155827 CCTTGCAGTCCGAATTCAAATTTAA 58.844 36.000 6.22 0.00 0.00 1.52
866 1677 5.708948 CCTTGCAGTCCGAATTCAAATTTA 58.291 37.500 6.22 0.00 0.00 1.40
867 1678 4.559153 CCTTGCAGTCCGAATTCAAATTT 58.441 39.130 6.22 0.00 0.00 1.82
868 1679 3.614870 GCCTTGCAGTCCGAATTCAAATT 60.615 43.478 6.22 0.00 0.00 1.82
869 1680 2.094545 GCCTTGCAGTCCGAATTCAAAT 60.095 45.455 6.22 0.00 0.00 2.32
870 1681 1.269448 GCCTTGCAGTCCGAATTCAAA 59.731 47.619 6.22 0.00 0.00 2.69
871 1682 0.881118 GCCTTGCAGTCCGAATTCAA 59.119 50.000 6.22 0.00 0.00 2.69
872 1683 0.250684 TGCCTTGCAGTCCGAATTCA 60.251 50.000 6.22 0.00 33.32 2.57
873 1684 0.169009 GTGCCTTGCAGTCCGAATTC 59.831 55.000 0.00 0.00 40.08 2.17
874 1685 0.537143 TGTGCCTTGCAGTCCGAATT 60.537 50.000 0.00 0.00 40.08 2.17
875 1686 1.073025 TGTGCCTTGCAGTCCGAAT 59.927 52.632 0.00 0.00 40.08 3.34
876 1687 1.891919 GTGTGCCTTGCAGTCCGAA 60.892 57.895 0.00 0.00 40.08 4.30
877 1688 2.280797 GTGTGCCTTGCAGTCCGA 60.281 61.111 0.00 0.00 40.08 4.55
878 1689 3.716006 CGTGTGCCTTGCAGTCCG 61.716 66.667 0.00 0.00 40.08 4.79
879 1690 2.725203 TACCGTGTGCCTTGCAGTCC 62.725 60.000 0.00 0.00 40.08 3.85
880 1691 0.882927 TTACCGTGTGCCTTGCAGTC 60.883 55.000 0.00 0.00 40.08 3.51
881 1692 1.147376 TTACCGTGTGCCTTGCAGT 59.853 52.632 0.00 0.00 40.08 4.40
882 1693 1.163420 TGTTACCGTGTGCCTTGCAG 61.163 55.000 0.00 0.00 40.08 4.41
883 1694 0.536233 ATGTTACCGTGTGCCTTGCA 60.536 50.000 0.00 0.00 35.60 4.08
884 1695 0.109781 CATGTTACCGTGTGCCTTGC 60.110 55.000 0.00 0.00 0.00 4.01
885 1696 0.109781 GCATGTTACCGTGTGCCTTG 60.110 55.000 0.00 0.00 0.00 3.61
886 1697 0.536233 TGCATGTTACCGTGTGCCTT 60.536 50.000 0.00 0.00 36.79 4.35
887 1698 0.536233 TTGCATGTTACCGTGTGCCT 60.536 50.000 0.00 0.00 36.79 4.75
888 1699 0.312416 TTTGCATGTTACCGTGTGCC 59.688 50.000 0.00 0.00 36.79 5.01
889 1700 1.265635 TCTTTGCATGTTACCGTGTGC 59.734 47.619 0.00 0.00 38.05 4.57
890 1701 3.491356 CATCTTTGCATGTTACCGTGTG 58.509 45.455 0.00 0.00 0.00 3.82
891 1702 3.829886 CATCTTTGCATGTTACCGTGT 57.170 42.857 0.00 0.00 0.00 4.49
904 1715 3.945921 AGATCAGGTGACATGCATCTTTG 59.054 43.478 0.00 0.00 35.17 2.77
905 1716 4.080469 AGAGATCAGGTGACATGCATCTTT 60.080 41.667 11.39 5.69 35.17 2.52
906 1717 3.455177 AGAGATCAGGTGACATGCATCTT 59.545 43.478 11.39 0.00 35.17 2.40
907 1718 3.039743 AGAGATCAGGTGACATGCATCT 58.960 45.455 10.38 10.38 38.94 2.90
908 1719 3.132160 CAGAGATCAGGTGACATGCATC 58.868 50.000 0.00 0.00 0.00 3.91
909 1720 2.504585 ACAGAGATCAGGTGACATGCAT 59.495 45.455 0.00 0.00 0.00 3.96
910 1721 1.904537 ACAGAGATCAGGTGACATGCA 59.095 47.619 0.00 0.00 0.00 3.96
911 1722 2.548875 GACAGAGATCAGGTGACATGC 58.451 52.381 0.00 0.00 0.00 4.06
912 1723 2.480932 CGGACAGAGATCAGGTGACATG 60.481 54.545 0.00 0.00 0.00 3.21
913 1724 1.753649 CGGACAGAGATCAGGTGACAT 59.246 52.381 0.00 0.00 0.00 3.06
914 1725 1.177401 CGGACAGAGATCAGGTGACA 58.823 55.000 0.00 0.00 0.00 3.58
915 1726 0.179124 GCGGACAGAGATCAGGTGAC 60.179 60.000 0.00 0.00 0.00 3.67
916 1727 1.323271 GGCGGACAGAGATCAGGTGA 61.323 60.000 0.00 0.00 0.00 4.02
917 1728 1.142748 GGCGGACAGAGATCAGGTG 59.857 63.158 0.00 0.00 0.00 4.00
918 1729 2.060980 GGGCGGACAGAGATCAGGT 61.061 63.158 0.00 0.00 0.00 4.00
919 1730 1.333636 AAGGGCGGACAGAGATCAGG 61.334 60.000 0.00 0.00 0.00 3.86
920 1731 0.539051 AAAGGGCGGACAGAGATCAG 59.461 55.000 0.00 0.00 0.00 2.90
921 1732 0.537188 GAAAGGGCGGACAGAGATCA 59.463 55.000 0.00 0.00 0.00 2.92
922 1733 0.179070 GGAAAGGGCGGACAGAGATC 60.179 60.000 0.00 0.00 0.00 2.75
923 1734 0.618968 AGGAAAGGGCGGACAGAGAT 60.619 55.000 0.00 0.00 0.00 2.75
924 1735 0.836400 AAGGAAAGGGCGGACAGAGA 60.836 55.000 0.00 0.00 0.00 3.10
925 1736 0.674895 CAAGGAAAGGGCGGACAGAG 60.675 60.000 0.00 0.00 0.00 3.35
926 1737 1.374947 CAAGGAAAGGGCGGACAGA 59.625 57.895 0.00 0.00 0.00 3.41
927 1738 0.955919 GACAAGGAAAGGGCGGACAG 60.956 60.000 0.00 0.00 0.00 3.51
928 1739 1.072505 GACAAGGAAAGGGCGGACA 59.927 57.895 0.00 0.00 0.00 4.02
929 1740 0.955919 CTGACAAGGAAAGGGCGGAC 60.956 60.000 0.00 0.00 0.00 4.79
930 1741 1.374947 CTGACAAGGAAAGGGCGGA 59.625 57.895 0.00 0.00 0.00 5.54
931 1742 2.335712 GCTGACAAGGAAAGGGCGG 61.336 63.158 0.00 0.00 0.00 6.13
932 1743 1.580845 CTGCTGACAAGGAAAGGGCG 61.581 60.000 0.00 0.00 0.00 6.13
951 1765 2.096980 GTGGTGAGCGTTTTATAAGGCC 59.903 50.000 0.00 0.00 44.19 5.19
1008 1824 0.181350 GGGGGCGAATGATCTTGACT 59.819 55.000 0.00 0.00 0.00 3.41
1094 1918 1.347062 GAGGAGGAGGATGGATGGTC 58.653 60.000 0.00 0.00 0.00 4.02
1267 2112 2.445654 GGGCTGGAGAGGAGGAGG 60.446 72.222 0.00 0.00 0.00 4.30
1268 2113 2.445654 GGGGCTGGAGAGGAGGAG 60.446 72.222 0.00 0.00 0.00 3.69
1269 2114 3.284251 TGGGGCTGGAGAGGAGGA 61.284 66.667 0.00 0.00 0.00 3.71
1320 2165 0.969894 ACTTAAGCTCTGTCGCACCT 59.030 50.000 1.29 0.00 0.00 4.00
1347 2192 7.083062 AGGGATTCAAAGCATCATGAGTATA 57.917 36.000 0.09 0.00 0.00 1.47
1378 2223 2.821810 GAAGGGAGAAGCAGCGGC 60.822 66.667 0.00 0.00 41.61 6.53
1384 2229 2.694213 GAAGTCACAGAAGGGAGAAGC 58.306 52.381 0.00 0.00 0.00 3.86
1385 2230 2.297597 ACGAAGTCACAGAAGGGAGAAG 59.702 50.000 0.00 0.00 29.74 2.85
1386 2231 2.317040 ACGAAGTCACAGAAGGGAGAA 58.683 47.619 0.00 0.00 29.74 2.87
1388 2233 2.035961 TCAACGAAGTCACAGAAGGGAG 59.964 50.000 0.00 0.00 45.00 4.30
1389 2234 2.035961 CTCAACGAAGTCACAGAAGGGA 59.964 50.000 0.00 0.00 45.00 4.20
1390 2235 2.224066 ACTCAACGAAGTCACAGAAGGG 60.224 50.000 0.00 0.00 45.00 3.95
1473 2330 5.617528 TTGAACCACTACTTACAGGAACA 57.382 39.130 0.00 0.00 0.00 3.18
1474 2331 7.360361 CAATTTGAACCACTACTTACAGGAAC 58.640 38.462 0.00 0.00 0.00 3.62
1476 2333 6.001460 CCAATTTGAACCACTACTTACAGGA 58.999 40.000 0.00 0.00 0.00 3.86
1478 2335 5.240623 TGCCAATTTGAACCACTACTTACAG 59.759 40.000 0.00 0.00 0.00 2.74
1479 2336 5.133941 TGCCAATTTGAACCACTACTTACA 58.866 37.500 0.00 0.00 0.00 2.41
1480 2337 5.699097 TGCCAATTTGAACCACTACTTAC 57.301 39.130 0.00 0.00 0.00 2.34
1481 2338 6.547880 TCTTTGCCAATTTGAACCACTACTTA 59.452 34.615 0.00 0.00 0.00 2.24
1483 2340 4.892934 TCTTTGCCAATTTGAACCACTACT 59.107 37.500 0.00 0.00 0.00 2.57
1484 2341 5.195001 TCTTTGCCAATTTGAACCACTAC 57.805 39.130 0.00 0.00 0.00 2.73
1485 2342 5.362430 AGTTCTTTGCCAATTTGAACCACTA 59.638 36.000 11.95 0.00 38.10 2.74
1486 2343 4.162131 AGTTCTTTGCCAATTTGAACCACT 59.838 37.500 11.95 0.00 38.10 4.00
1487 2344 4.441792 AGTTCTTTGCCAATTTGAACCAC 58.558 39.130 11.95 0.00 38.10 4.16
1488 2345 4.751767 AGTTCTTTGCCAATTTGAACCA 57.248 36.364 11.95 0.00 38.10 3.67
1489 2346 6.705825 ACAATAGTTCTTTGCCAATTTGAACC 59.294 34.615 11.95 0.00 38.10 3.62
1512 2369 0.708209 TCCTCTAGTGCTACCCCACA 59.292 55.000 0.00 0.00 38.18 4.17
1520 2377 2.419297 CGCAGGAATTTCCTCTAGTGCT 60.419 50.000 15.24 0.00 45.66 4.40
1522 2379 1.936547 GCGCAGGAATTTCCTCTAGTG 59.063 52.381 15.24 11.82 45.66 2.74
1530 2387 0.451783 AATCACCGCGCAGGAATTTC 59.548 50.000 22.10 0.00 45.00 2.17
1541 2418 1.154225 CGCAGAACCAAATCACCGC 60.154 57.895 0.00 0.00 0.00 5.68
1608 2485 8.798859 AAAGTGCATCAACTCAAGTCTATAAT 57.201 30.769 0.00 0.00 0.00 1.28
1630 2508 6.968250 AGTTCAGAAAAGAATGAGCAGAAAG 58.032 36.000 0.00 0.00 0.00 2.62
1637 2515 6.149142 AGCTAGCAAGTTCAGAAAAGAATGAG 59.851 38.462 18.83 0.00 0.00 2.90
1653 2532 1.135199 CAAATGGCCACAGCTAGCAAG 60.135 52.381 18.83 11.61 39.73 4.01
1789 2672 6.150140 GTCAGCTATGGAAAAGTCAACATTCT 59.850 38.462 0.00 0.00 0.00 2.40
1803 2686 4.410228 AGCTATGAAAAGGTCAGCTATGGA 59.590 41.667 0.00 0.00 40.43 3.41
1859 2742 4.248859 GCACATCTAGACCGCATCATAAT 58.751 43.478 0.00 0.00 0.00 1.28
1861 2744 2.029020 GGCACATCTAGACCGCATCATA 60.029 50.000 10.92 0.00 0.00 2.15
1899 2782 7.067008 AGCGCAAGTGGATTATATTTTGTTAGT 59.933 33.333 11.47 0.00 41.68 2.24
2099 3076 4.494350 ACAACATTTCTCATGTGCACTC 57.506 40.909 19.41 0.00 31.80 3.51
2101 3078 4.863491 AGAACAACATTTCTCATGTGCAC 58.137 39.130 10.75 10.75 29.24 4.57
2146 3128 1.838112 AGTACAATGGTGGTGCATGG 58.162 50.000 0.00 0.00 0.00 3.66
2170 3157 8.644619 CATCTAAAAACTGCATTTGAGTCAATG 58.355 33.333 6.36 8.40 0.00 2.82
2201 3188 0.180406 GGGCGGTGATGAAGTATGGT 59.820 55.000 0.00 0.00 0.00 3.55
2767 3790 3.813724 GAGTCACCATGATCATGACCATG 59.186 47.826 32.71 21.56 43.10 3.66
2768 3791 3.493873 CGAGTCACCATGATCATGACCAT 60.494 47.826 32.71 16.35 43.10 3.55
2769 3792 2.159057 CGAGTCACCATGATCATGACCA 60.159 50.000 32.71 15.08 43.10 4.02
2770 3793 2.477825 CGAGTCACCATGATCATGACC 58.522 52.381 32.71 17.99 43.10 4.02
2771 3794 2.101415 TCCGAGTCACCATGATCATGAC 59.899 50.000 32.71 24.31 42.54 3.06
2772 3795 2.363359 CTCCGAGTCACCATGATCATGA 59.637 50.000 32.71 14.76 41.20 3.07
2885 3914 3.569701 GTGTTGTCCAGTGGTTGAATGAT 59.430 43.478 9.54 0.00 0.00 2.45
2975 4025 4.414852 GCTGTGCACATTGATATTTCGTT 58.585 39.130 22.00 0.00 0.00 3.85
2976 4026 3.485711 CGCTGTGCACATTGATATTTCGT 60.486 43.478 22.00 0.00 0.00 3.85
2979 4029 2.801063 GCGCTGTGCACATTGATATTT 58.199 42.857 22.00 0.00 45.45 1.40
2997 4047 0.578683 CGATCACATGCAGGTAAGCG 59.421 55.000 2.51 0.00 37.31 4.68
3357 4407 6.980978 CGATGTTGTACTCTTCCTTGATGTAT 59.019 38.462 0.00 0.00 0.00 2.29
3454 4524 5.752472 CCATTCACACAATAAAGCACAACAA 59.248 36.000 0.00 0.00 0.00 2.83
3539 4611 3.802866 TGAAAACTTTGCCAAATGGACC 58.197 40.909 2.98 0.00 37.39 4.46
3573 4645 5.365403 TTTAGTACCATGAAAACCTTGCG 57.635 39.130 0.00 0.00 0.00 4.85
3623 4695 7.875041 CCACCAAAACCATACAAAATCAATGTA 59.125 33.333 0.00 0.00 37.64 2.29
3771 4850 0.449388 CGAATTCCCAGAGTGCTTGC 59.551 55.000 0.00 0.00 0.00 4.01
3808 4887 0.907486 TCCAGCAGGATCAGAACAGG 59.093 55.000 0.00 0.00 39.61 4.00
3855 4934 3.118555 TGTCGTGAACAAAAGGAGAAGGA 60.119 43.478 0.00 0.00 34.03 3.36
3871 4950 0.098552 TTGTTGCTGCAGTTGTCGTG 59.901 50.000 16.64 0.00 0.00 4.35
3873 4952 0.317269 CCTTGTTGCTGCAGTTGTCG 60.317 55.000 16.64 0.00 0.00 4.35
3900 4979 2.485122 CAAACGCGCCCAATCTCC 59.515 61.111 5.73 0.00 0.00 3.71
3907 4986 1.507141 CTATCCATCCAAACGCGCCC 61.507 60.000 5.73 0.00 0.00 6.13
3922 5001 4.694509 CAGGCAAGGTATCTGAATGCTATC 59.305 45.833 0.00 0.00 37.20 2.08
3940 5019 0.900182 TCGAGCTCTTCTTCCAGGCA 60.900 55.000 12.85 0.00 0.00 4.75
3941 5020 0.463620 ATCGAGCTCTTCTTCCAGGC 59.536 55.000 12.85 0.00 0.00 4.85
3943 5022 3.552684 GGATCATCGAGCTCTTCTTCCAG 60.553 52.174 12.85 0.00 0.00 3.86
3947 5026 2.392662 TGGGATCATCGAGCTCTTCTT 58.607 47.619 12.85 0.00 0.00 2.52
3987 5066 3.938334 GGAGCCTCTTCATCTTCTTCAAC 59.062 47.826 0.00 0.00 0.00 3.18
4063 5142 0.734253 GAGCTGTGCGGATATAGCGG 60.734 60.000 0.00 0.00 39.46 5.52
4065 5144 1.347817 GCGAGCTGTGCGGATATAGC 61.348 60.000 0.00 3.26 35.32 2.97
4070 5149 1.308069 ATTTTGCGAGCTGTGCGGAT 61.308 50.000 0.00 0.00 34.24 4.18
4075 5154 1.882198 CGGTTATTTTGCGAGCTGTG 58.118 50.000 0.00 0.00 0.00 3.66
4076 5155 0.168128 GCGGTTATTTTGCGAGCTGT 59.832 50.000 0.00 0.00 0.00 4.40
4078 5157 1.800681 GGCGGTTATTTTGCGAGCT 59.199 52.632 0.00 0.00 0.00 4.09
4081 5160 0.873054 TTTCGGCGGTTATTTTGCGA 59.127 45.000 7.21 0.00 0.00 5.10
4112 5191 3.535561 CGGACGGATATACGGTACCTAT 58.464 50.000 12.94 9.34 38.39 2.57
4144 5223 2.243602 TTAGAGGTCGCCGTGTTTTT 57.756 45.000 0.00 0.00 0.00 1.94
4147 5226 1.549170 AGATTTAGAGGTCGCCGTGTT 59.451 47.619 0.00 0.00 0.00 3.32
4148 5227 1.183549 AGATTTAGAGGTCGCCGTGT 58.816 50.000 0.00 0.00 0.00 4.49
4149 5228 2.295253 AAGATTTAGAGGTCGCCGTG 57.705 50.000 0.00 0.00 0.00 4.94
4285 5384 8.013947 TGTTCACACATTTCAAAAACATGTTTG 58.986 29.630 23.93 13.73 39.41 2.93
4286 5385 8.092521 TGTTCACACATTTCAAAAACATGTTT 57.907 26.923 18.13 18.13 0.00 2.83
4303 5402 7.915397 ACATGACAGTTAAAGAATTGTTCACAC 59.085 33.333 0.00 0.00 35.79 3.82
4304 5403 7.995289 ACATGACAGTTAAAGAATTGTTCACA 58.005 30.769 0.00 0.00 35.79 3.58
4412 5511 0.916086 ATCGGTCACAAATAGCCCCA 59.084 50.000 0.00 0.00 0.00 4.96
4480 5579 9.448587 ACCTTCCTAAACCACTACATAATCTAT 57.551 33.333 0.00 0.00 0.00 1.98
4481 5580 8.849543 ACCTTCCTAAACCACTACATAATCTA 57.150 34.615 0.00 0.00 0.00 1.98
4517 5625 8.562052 TCAAAGGTTCTAAAATAAGTTCGAACC 58.438 33.333 24.22 11.44 43.44 3.62
4581 5693 9.203421 GAAGAAAAGAACCAAGAGAAACAAAAA 57.797 29.630 0.00 0.00 0.00 1.94
4585 5697 6.127730 GGTGAAGAAAAGAACCAAGAGAAACA 60.128 38.462 0.00 0.00 32.69 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.