Multiple sequence alignment - TraesCS4D01G323200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G323200 chr4D 100.000 4425 0 0 1 4425 484687290 484691714 0.000000e+00 8172.0
1 TraesCS4D01G323200 chr4D 98.214 168 3 0 1162 1329 62772199 62772366 1.200000e-75 294.0
2 TraesCS4D01G323200 chr4D 87.574 169 13 1 4265 4425 484705422 484705590 5.840000e-44 189.0
3 TraesCS4D01G323200 chr4B 91.805 2831 154 40 1624 4425 617380476 617383257 0.000000e+00 3871.0
4 TraesCS4D01G323200 chr4B 88.490 808 46 21 742 1539 617379654 617380424 0.000000e+00 933.0
5 TraesCS4D01G323200 chr4B 92.439 410 18 6 1 409 617333301 617333698 1.380000e-159 573.0
6 TraesCS4D01G323200 chr4B 85.799 169 16 1 4265 4425 617392077 617392245 5.880000e-39 172.0
7 TraesCS4D01G323200 chr4B 88.288 111 9 2 3977 4083 617390542 617390652 3.590000e-26 130.0
8 TraesCS4D01G323200 chr4B 86.420 81 8 3 419 498 617333830 617333908 7.890000e-13 86.1
9 TraesCS4D01G323200 chr5A 94.980 2012 79 12 1729 3725 665612717 665614721 0.000000e+00 3136.0
10 TraesCS4D01G323200 chr5A 88.967 852 39 17 704 1540 665611774 665612585 0.000000e+00 1002.0
11 TraesCS4D01G323200 chr5A 91.264 538 35 6 3712 4246 665614823 665615351 0.000000e+00 723.0
12 TraesCS4D01G323200 chr5A 91.866 418 21 7 1 409 665609966 665610379 4.970000e-159 571.0
13 TraesCS4D01G323200 chr5A 99.248 133 1 0 4293 4425 665615349 665615481 1.590000e-59 241.0
14 TraesCS4D01G323200 chr5A 87.574 169 13 1 4265 4425 665701771 665701939 5.840000e-44 189.0
15 TraesCS4D01G323200 chr5A 90.090 111 7 3 3977 4083 665695856 665695966 1.660000e-29 141.0
16 TraesCS4D01G323200 chr5A 77.108 166 28 9 518 681 150402468 150402311 2.190000e-13 87.9
17 TraesCS4D01G323200 chr5A 91.379 58 3 1 1624 1681 665612636 665612691 1.320000e-10 78.7
18 TraesCS4D01G323200 chr1D 99.184 245 2 0 1162 1406 11241427 11241183 4.060000e-120 442.0
19 TraesCS4D01G323200 chr1D 98.235 170 3 0 1162 1331 479723142 479723311 9.300000e-77 298.0
20 TraesCS4D01G323200 chr5D 96.407 167 6 0 1165 1331 533530915 533530749 4.360000e-70 276.0
21 TraesCS4D01G323200 chr5D 82.237 152 23 4 515 665 461043995 461043847 1.290000e-25 128.0
22 TraesCS4D01G323200 chr7A 79.657 408 58 17 5 396 524699977 524699579 2.030000e-68 270.0
23 TraesCS4D01G323200 chr3D 87.634 186 20 2 498 680 394193432 394193617 3.470000e-51 213.0
24 TraesCS4D01G323200 chr1B 84.699 183 24 1 499 681 532058940 532058762 3.520000e-41 180.0
25 TraesCS4D01G323200 chr7D 84.906 159 23 1 519 677 173900780 173900937 4.580000e-35 159.0
26 TraesCS4D01G323200 chr7B 80.663 181 31 4 500 678 590262350 590262172 2.150000e-28 137.0
27 TraesCS4D01G323200 chr3B 92.754 69 5 0 571 639 12314523 12314455 2.820000e-17 100.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G323200 chr4D 484687290 484691714 4424 False 8172.000000 8172 100.000000 1 4425 1 chr4D.!!$F2 4424
1 TraesCS4D01G323200 chr4B 617379654 617383257 3603 False 2402.000000 3871 90.147500 742 4425 2 chr4B.!!$F2 3683
2 TraesCS4D01G323200 chr4B 617333301 617333908 607 False 329.550000 573 89.429500 1 498 2 chr4B.!!$F1 497
3 TraesCS4D01G323200 chr5A 665609966 665615481 5515 False 958.616667 3136 92.950667 1 4425 6 chr5A.!!$F3 4424

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
806 1925 0.03467 AGGTTGCTGGCTCCAATCTC 60.035 55.0 9.10 0.0 27.71 2.75 F
1699 2842 0.10412 CCGTGATAGTGATTCGGCCA 59.896 55.0 2.24 0.0 35.01 5.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2796 3953 0.036164 AGCACCGCAACAATCAGGTA 59.964 50.000 0.0 0.0 34.83 3.08 R
3653 4813 1.079405 TCCTTCCGCACCATTCGAC 60.079 57.895 0.0 0.0 0.00 4.20 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
57 58 2.434884 CTGATGCAGGACGGCGTT 60.435 61.111 16.19 0.00 36.28 4.84
170 171 4.011517 CCCCAGGGTACGCACGTT 62.012 66.667 12.95 0.00 0.00 3.99
171 172 2.433664 CCCAGGGTACGCACGTTC 60.434 66.667 12.95 0.00 0.00 3.95
172 173 2.807895 CCAGGGTACGCACGTTCG 60.808 66.667 12.95 5.94 0.00 3.95
174 175 2.049802 AGGGTACGCACGTTCGTG 60.050 61.111 23.20 19.03 43.21 4.35
190 195 2.348660 TCGTGGTGTCTTTTGTTTCGT 58.651 42.857 0.00 0.00 0.00 3.85
201 206 4.619336 TCTTTTGTTTCGTTCAGTTTGTGC 59.381 37.500 0.00 0.00 0.00 4.57
228 233 2.102553 GCGAGAGGAGTACGGTGC 59.897 66.667 0.00 0.00 0.00 5.01
230 235 1.094073 GCGAGAGGAGTACGGTGCTA 61.094 60.000 0.00 0.00 0.00 3.49
266 276 5.004448 TCTCCGTGTGCAACCAAATTATTA 58.996 37.500 0.00 0.00 34.36 0.98
267 277 5.650266 TCTCCGTGTGCAACCAAATTATTAT 59.350 36.000 0.00 0.00 34.36 1.28
268 278 6.151985 TCTCCGTGTGCAACCAAATTATTATT 59.848 34.615 0.00 0.00 34.36 1.40
281 291 8.856103 ACCAAATTATTATTACAGGATTTCGGG 58.144 33.333 0.00 0.00 0.00 5.14
402 412 1.942657 TCTTCGCCAAGATGCAATAGC 59.057 47.619 0.00 0.00 35.98 2.97
409 419 3.760151 GCCAAGATGCAATAGCCATGATA 59.240 43.478 0.00 0.00 41.13 2.15
411 421 5.450137 GCCAAGATGCAATAGCCATGATATC 60.450 44.000 0.00 0.00 41.13 1.63
412 422 5.650703 CCAAGATGCAATAGCCATGATATCA 59.349 40.000 8.10 8.10 41.13 2.15
414 424 6.063496 AGATGCAATAGCCATGATATCAGT 57.937 37.500 11.78 0.00 41.13 3.41
415 425 7.191593 AGATGCAATAGCCATGATATCAGTA 57.808 36.000 11.78 1.00 41.13 2.74
417 427 8.272889 AGATGCAATAGCCATGATATCAGTATT 58.727 33.333 11.78 8.58 41.13 1.89
459 595 5.641636 TGTGCATGACTGTACGATTTGTAAT 59.358 36.000 0.00 0.00 40.50 1.89
467 603 9.263538 TGACTGTACGATTTGTAATTTTGTAGT 57.736 29.630 0.00 0.00 34.07 2.73
470 606 9.685005 CTGTACGATTTGTAATTTTGTAGTAGC 57.315 33.333 0.00 0.00 34.07 3.58
475 611 9.901724 CGATTTGTAATTTTGTAGTAGCAGTAG 57.098 33.333 0.00 0.00 0.00 2.57
499 635 8.743085 AGTATAATGCCATGCTTAGATTATGG 57.257 34.615 0.00 0.00 43.31 2.74
500 636 8.551440 AGTATAATGCCATGCTTAGATTATGGA 58.449 33.333 12.52 2.07 43.15 3.41
501 637 5.972107 AATGCCATGCTTAGATTATGGAC 57.028 39.130 12.52 6.49 43.15 4.02
502 638 3.754965 TGCCATGCTTAGATTATGGACC 58.245 45.455 12.52 0.00 43.15 4.46
503 639 3.084786 GCCATGCTTAGATTATGGACCC 58.915 50.000 12.52 0.00 43.15 4.46
504 640 3.245052 GCCATGCTTAGATTATGGACCCT 60.245 47.826 12.52 0.00 43.15 4.34
505 641 4.330250 CCATGCTTAGATTATGGACCCTG 58.670 47.826 0.00 0.00 43.15 4.45
507 643 4.689612 TGCTTAGATTATGGACCCTGAC 57.310 45.455 0.00 0.00 0.00 3.51
508 644 4.037222 TGCTTAGATTATGGACCCTGACA 58.963 43.478 0.00 0.00 0.00 3.58
510 646 5.059833 GCTTAGATTATGGACCCTGACAAG 58.940 45.833 0.00 0.00 0.00 3.16
511 647 5.396884 GCTTAGATTATGGACCCTGACAAGT 60.397 44.000 0.00 0.00 0.00 3.16
512 648 4.494091 AGATTATGGACCCTGACAAGTG 57.506 45.455 0.00 0.00 0.00 3.16
513 649 3.846588 AGATTATGGACCCTGACAAGTGT 59.153 43.478 0.00 0.00 0.00 3.55
526 662 1.507562 CAAGTGTCATACGTGTGGCA 58.492 50.000 16.06 16.06 34.58 4.92
536 672 3.259930 GTGTGGCACGGCGTAATT 58.740 55.556 14.22 0.00 0.00 1.40
538 674 2.036006 TGTGGCACGGCGTAATTCC 61.036 57.895 14.22 12.32 0.00 3.01
545 681 2.966324 CGGCGTAATTCCGTCATGA 58.034 52.632 0.00 0.00 41.85 3.07
546 682 0.575390 CGGCGTAATTCCGTCATGAC 59.425 55.000 16.21 16.21 41.85 3.06
548 684 2.210116 GGCGTAATTCCGTCATGACAT 58.790 47.619 24.93 8.88 31.49 3.06
549 685 2.612212 GGCGTAATTCCGTCATGACATT 59.388 45.455 24.93 18.21 31.49 2.71
550 686 3.064820 GGCGTAATTCCGTCATGACATTT 59.935 43.478 24.93 13.90 31.49 2.32
552 688 5.092781 GCGTAATTCCGTCATGACATTTTT 58.907 37.500 24.93 14.53 0.00 1.94
574 710 5.811399 TTTATGGCAAGTTTAGTCATCCG 57.189 39.130 0.00 0.00 0.00 4.18
575 711 3.627395 ATGGCAAGTTTAGTCATCCGA 57.373 42.857 0.00 0.00 0.00 4.55
576 712 2.972625 TGGCAAGTTTAGTCATCCGAG 58.027 47.619 0.00 0.00 0.00 4.63
577 713 2.280628 GGCAAGTTTAGTCATCCGAGG 58.719 52.381 0.00 0.00 0.00 4.63
592 728 4.884668 TCCGAGGATGACAACTTTAGTT 57.115 40.909 0.00 0.00 39.12 2.24
593 729 5.178797 ATCCGAGGATGACAACTTTAGTTG 58.821 41.667 18.46 18.46 45.25 3.16
613 749 6.459257 GTTGTGAAGTATGACAACTCTCTG 57.541 41.667 0.00 0.00 45.60 3.35
614 750 5.791336 TGTGAAGTATGACAACTCTCTGT 57.209 39.130 0.00 0.00 0.00 3.41
615 751 6.161855 TGTGAAGTATGACAACTCTCTGTT 57.838 37.500 0.00 0.00 39.92 3.16
617 753 6.479990 TGTGAAGTATGACAACTCTCTGTTTG 59.520 38.462 0.00 0.00 36.63 2.93
618 754 5.991606 TGAAGTATGACAACTCTCTGTTTGG 59.008 40.000 0.00 0.00 36.63 3.28
619 755 5.808366 AGTATGACAACTCTCTGTTTGGA 57.192 39.130 0.00 0.00 36.63 3.53
622 758 7.551585 AGTATGACAACTCTCTGTTTGGATAG 58.448 38.462 0.00 0.00 36.63 2.08
623 759 4.569943 TGACAACTCTCTGTTTGGATAGC 58.430 43.478 0.00 0.00 36.63 2.97
624 760 4.040339 TGACAACTCTCTGTTTGGATAGCA 59.960 41.667 0.00 0.00 36.63 3.49
625 761 4.973168 ACAACTCTCTGTTTGGATAGCAA 58.027 39.130 0.00 0.00 36.63 3.91
626 762 4.999950 ACAACTCTCTGTTTGGATAGCAAG 59.000 41.667 0.00 0.00 36.63 4.01
627 763 4.899352 ACTCTCTGTTTGGATAGCAAGT 57.101 40.909 0.00 0.00 0.00 3.16
628 764 5.234466 ACTCTCTGTTTGGATAGCAAGTT 57.766 39.130 0.00 0.00 0.00 2.66
629 765 5.625150 ACTCTCTGTTTGGATAGCAAGTTT 58.375 37.500 0.00 0.00 0.00 2.66
630 766 5.703130 ACTCTCTGTTTGGATAGCAAGTTTC 59.297 40.000 0.00 0.00 0.00 2.78
631 767 5.620206 TCTCTGTTTGGATAGCAAGTTTCA 58.380 37.500 0.00 0.00 0.00 2.69
632 768 5.702670 TCTCTGTTTGGATAGCAAGTTTCAG 59.297 40.000 0.00 0.00 0.00 3.02
635 771 6.321181 TCTGTTTGGATAGCAAGTTTCAGTTT 59.679 34.615 0.00 0.00 0.00 2.66
637 773 7.327214 TGTTTGGATAGCAAGTTTCAGTTTTT 58.673 30.769 0.00 0.00 0.00 1.94
694 830 3.443588 AAAAAGGCGGCCTGACAC 58.556 55.556 24.63 0.00 32.13 3.67
695 831 1.152756 AAAAAGGCGGCCTGACACT 60.153 52.632 24.63 2.67 32.13 3.55
696 832 0.755327 AAAAAGGCGGCCTGACACTT 60.755 50.000 24.63 9.91 32.13 3.16
697 833 0.109723 AAAAGGCGGCCTGACACTTA 59.890 50.000 24.63 0.00 32.13 2.24
698 834 0.328258 AAAGGCGGCCTGACACTTAT 59.672 50.000 24.63 0.00 32.13 1.73
699 835 0.107654 AAGGCGGCCTGACACTTATC 60.108 55.000 24.63 0.00 32.13 1.75
700 836 1.220749 GGCGGCCTGACACTTATCA 59.779 57.895 12.87 0.00 0.00 2.15
701 837 0.179045 GGCGGCCTGACACTTATCAT 60.179 55.000 12.87 0.00 0.00 2.45
702 838 1.668419 GCGGCCTGACACTTATCATT 58.332 50.000 0.00 0.00 0.00 2.57
706 1819 2.689983 GGCCTGACACTTATCATTTGGG 59.310 50.000 0.00 0.00 0.00 4.12
708 1821 4.523083 GCCTGACACTTATCATTTGGGTA 58.477 43.478 0.00 0.00 0.00 3.69
720 1833 9.155975 CTTATCATTTGGGTAGATTATTCTCCG 57.844 37.037 0.00 0.00 33.17 4.63
732 1845 9.152595 GTAGATTATTCTCCGACTTTCTTGTTT 57.847 33.333 0.00 0.00 33.17 2.83
761 1874 7.231317 TGGATTTCAGTATTTTCTTCTGCAGTT 59.769 33.333 14.67 0.00 0.00 3.16
802 1921 4.179361 CAAGGTTGCTGGCTCCAA 57.821 55.556 9.10 0.00 0.00 3.53
803 1922 2.662309 CAAGGTTGCTGGCTCCAAT 58.338 52.632 9.10 0.00 0.00 3.16
804 1923 0.529378 CAAGGTTGCTGGCTCCAATC 59.471 55.000 9.10 0.00 0.00 2.67
805 1924 0.407139 AAGGTTGCTGGCTCCAATCT 59.593 50.000 9.10 0.00 35.26 2.40
806 1925 0.034670 AGGTTGCTGGCTCCAATCTC 60.035 55.000 9.10 0.00 27.71 2.75
807 1926 1.034292 GGTTGCTGGCTCCAATCTCC 61.034 60.000 0.00 0.00 0.00 3.71
808 1927 0.322816 GTTGCTGGCTCCAATCTCCA 60.323 55.000 0.00 0.00 0.00 3.86
813 1932 2.496899 TGGCTCCAATCTCCAGAAAC 57.503 50.000 0.00 0.00 0.00 2.78
814 1933 1.704628 TGGCTCCAATCTCCAGAAACA 59.295 47.619 0.00 0.00 0.00 2.83
821 1940 6.579666 TCCAATCTCCAGAAACAGAAATTG 57.420 37.500 0.00 0.00 0.00 2.32
857 1976 1.756538 GTGTTATTTGATGGGCCCAGG 59.243 52.381 31.97 0.00 0.00 4.45
913 2032 0.447011 CAGTAAGCAAGCTCAGCTGC 59.553 55.000 9.47 6.44 42.53 5.25
917 2036 1.849976 AAGCAAGCTCAGCTGCGAAC 61.850 55.000 9.47 0.00 42.53 3.95
918 2037 2.866028 CAAGCTCAGCTGCGAACC 59.134 61.111 9.47 0.00 39.62 3.62
940 2059 1.227556 GCCCACAGAACAGTCGTGT 60.228 57.895 0.00 0.00 39.19 4.49
942 2061 1.498865 CCCACAGAACAGTCGTGTGC 61.499 60.000 9.02 0.00 40.26 4.57
943 2062 0.809636 CCACAGAACAGTCGTGTGCA 60.810 55.000 9.02 0.00 40.26 4.57
944 2063 0.578683 CACAGAACAGTCGTGTGCAG 59.421 55.000 2.97 0.00 36.84 4.41
945 2064 0.459899 ACAGAACAGTCGTGTGCAGA 59.540 50.000 0.00 0.00 36.84 4.26
946 2065 1.135046 CAGAACAGTCGTGTGCAGAG 58.865 55.000 0.00 0.00 36.84 3.35
947 2066 1.032794 AGAACAGTCGTGTGCAGAGA 58.967 50.000 0.00 0.00 36.84 3.10
948 2067 1.000827 AGAACAGTCGTGTGCAGAGAG 60.001 52.381 0.00 0.00 36.84 3.20
949 2068 0.598680 AACAGTCGTGTGCAGAGAGC 60.599 55.000 0.00 0.00 45.96 4.09
950 2069 1.288439 CAGTCGTGTGCAGAGAGCT 59.712 57.895 0.00 0.00 45.94 4.09
951 2070 1.007848 CAGTCGTGTGCAGAGAGCTG 61.008 60.000 0.00 0.00 45.94 4.24
952 2071 1.175347 AGTCGTGTGCAGAGAGCTGA 61.175 55.000 0.00 0.00 45.17 4.26
953 2072 0.732196 GTCGTGTGCAGAGAGCTGAG 60.732 60.000 0.00 0.00 45.17 3.35
954 2073 2.093473 CGTGTGCAGAGAGCTGAGC 61.093 63.158 0.00 0.00 45.17 4.26
960 2079 1.142314 CAGAGAGCTGAGCCTGAGC 59.858 63.158 0.00 0.00 45.17 4.26
1033 2152 2.124487 CGGCTCTCTCCGTCTCCT 60.124 66.667 0.00 0.00 44.18 3.69
1103 2225 1.731613 CGCGCGTCAAGGTAAGACA 60.732 57.895 24.19 0.00 35.77 3.41
1157 2282 1.522569 CCTCTGATTCCGTGGTCCC 59.477 63.158 0.00 0.00 0.00 4.46
1463 2596 1.544314 GCTCATGGGATTGAGGGCTAC 60.544 57.143 0.00 0.00 42.78 3.58
1468 2601 3.414759 TGGGATTGAGGGCTACTTCTA 57.585 47.619 0.00 0.00 0.00 2.10
1469 2602 3.309296 TGGGATTGAGGGCTACTTCTAG 58.691 50.000 0.00 0.00 0.00 2.43
1472 2605 4.039852 GGGATTGAGGGCTACTTCTAGAAG 59.960 50.000 27.41 27.41 43.79 2.85
1492 2625 2.480419 AGTCGCACATTTGTACTGCTTC 59.520 45.455 2.99 0.00 0.00 3.86
1494 2627 1.464023 CGCACATTTGTACTGCTTCCG 60.464 52.381 2.99 0.00 0.00 4.30
1497 2630 3.554524 CACATTTGTACTGCTTCCGTTG 58.445 45.455 0.00 0.00 0.00 4.10
1519 2652 4.154015 TGTGCTTGCATTGTCAGTATGTAC 59.846 41.667 0.00 0.00 37.40 2.90
1520 2653 4.154015 GTGCTTGCATTGTCAGTATGTACA 59.846 41.667 0.00 0.00 37.40 2.90
1540 2677 7.327975 TGTACAAGGTAGGATTGTGTATTGAG 58.672 38.462 0.00 0.00 40.92 3.02
1541 2678 5.745227 ACAAGGTAGGATTGTGTATTGAGG 58.255 41.667 0.00 0.00 39.36 3.86
1543 2680 5.878406 AGGTAGGATTGTGTATTGAGGAG 57.122 43.478 0.00 0.00 0.00 3.69
1544 2681 4.656112 AGGTAGGATTGTGTATTGAGGAGG 59.344 45.833 0.00 0.00 0.00 4.30
1545 2682 4.654262 GGTAGGATTGTGTATTGAGGAGGA 59.346 45.833 0.00 0.00 0.00 3.71
1546 2683 5.308237 GGTAGGATTGTGTATTGAGGAGGAT 59.692 44.000 0.00 0.00 0.00 3.24
1547 2684 6.497259 GGTAGGATTGTGTATTGAGGAGGATA 59.503 42.308 0.00 0.00 0.00 2.59
1548 2685 7.016268 GGTAGGATTGTGTATTGAGGAGGATAA 59.984 40.741 0.00 0.00 0.00 1.75
1549 2686 7.451731 AGGATTGTGTATTGAGGAGGATAAA 57.548 36.000 0.00 0.00 0.00 1.40
1550 2687 8.050316 AGGATTGTGTATTGAGGAGGATAAAT 57.950 34.615 0.00 0.00 0.00 1.40
1551 2688 9.170890 AGGATTGTGTATTGAGGAGGATAAATA 57.829 33.333 0.00 0.00 0.00 1.40
1552 2689 9.442047 GGATTGTGTATTGAGGAGGATAAATAG 57.558 37.037 0.00 0.00 0.00 1.73
1555 2692 8.547481 TGTGTATTGAGGAGGATAAATAGTCA 57.453 34.615 0.00 0.00 0.00 3.41
1556 2693 8.988060 TGTGTATTGAGGAGGATAAATAGTCAA 58.012 33.333 0.00 0.00 0.00 3.18
1561 2698 8.980481 TTGAGGAGGATAAATAGTCAATTTCC 57.020 34.615 0.00 0.00 38.71 3.13
1562 2699 8.337118 TGAGGAGGATAAATAGTCAATTTCCT 57.663 34.615 0.00 0.00 37.47 3.36
1563 2700 8.432805 TGAGGAGGATAAATAGTCAATTTCCTC 58.567 37.037 8.06 8.06 44.33 3.71
1564 2701 8.574309 AGGAGGATAAATAGTCAATTTCCTCT 57.426 34.615 13.89 2.06 44.41 3.69
1565 2702 8.655901 AGGAGGATAAATAGTCAATTTCCTCTC 58.344 37.037 13.89 7.00 44.41 3.20
1566 2703 8.655901 GGAGGATAAATAGTCAATTTCCTCTCT 58.344 37.037 13.89 3.23 44.41 3.10
1572 2709 4.993029 AGTCAATTTCCTCTCTAGTCCG 57.007 45.455 0.00 0.00 0.00 4.79
1573 2710 4.345854 AGTCAATTTCCTCTCTAGTCCGT 58.654 43.478 0.00 0.00 0.00 4.69
1574 2711 5.507637 AGTCAATTTCCTCTCTAGTCCGTA 58.492 41.667 0.00 0.00 0.00 4.02
1575 2712 5.357596 AGTCAATTTCCTCTCTAGTCCGTAC 59.642 44.000 0.00 0.00 0.00 3.67
1576 2713 5.357596 GTCAATTTCCTCTCTAGTCCGTACT 59.642 44.000 0.00 0.00 39.91 2.73
1577 2714 5.357314 TCAATTTCCTCTCTAGTCCGTACTG 59.643 44.000 0.00 0.00 36.36 2.74
1578 2715 4.564782 TTTCCTCTCTAGTCCGTACTGA 57.435 45.455 0.00 0.00 36.36 3.41
1579 2716 3.823281 TCCTCTCTAGTCCGTACTGAG 57.177 52.381 0.00 0.00 36.36 3.35
1580 2717 3.372897 TCCTCTCTAGTCCGTACTGAGA 58.627 50.000 8.97 8.97 37.46 3.27
1581 2718 3.385433 TCCTCTCTAGTCCGTACTGAGAG 59.615 52.174 20.51 20.51 45.54 3.20
1591 2728 1.202313 CGTACTGAGAGCTTAGCCACC 60.202 57.143 0.00 0.00 0.00 4.61
1600 2737 1.834263 AGCTTAGCCACCTTCGAGATT 59.166 47.619 0.00 0.00 0.00 2.40
1602 2739 2.418746 GCTTAGCCACCTTCGAGATTCA 60.419 50.000 0.00 0.00 0.00 2.57
1606 2743 1.338200 GCCACCTTCGAGATTCAGTGT 60.338 52.381 0.00 0.00 0.00 3.55
1607 2744 2.341257 CCACCTTCGAGATTCAGTGTG 58.659 52.381 0.00 0.00 0.00 3.82
1608 2745 2.289072 CCACCTTCGAGATTCAGTGTGT 60.289 50.000 0.00 0.00 0.00 3.72
1614 2751 5.518128 CCTTCGAGATTCAGTGTGTATTCTG 59.482 44.000 0.00 0.00 0.00 3.02
1617 2754 6.093404 TCGAGATTCAGTGTGTATTCTGTTC 58.907 40.000 0.00 0.00 33.89 3.18
1681 2824 6.266103 TGCATGATCTTCCCTTTTATCATTCC 59.734 38.462 0.00 0.00 37.04 3.01
1683 2826 6.001449 TGATCTTCCCTTTTATCATTCCGT 57.999 37.500 0.00 0.00 0.00 4.69
1684 2827 5.822519 TGATCTTCCCTTTTATCATTCCGTG 59.177 40.000 0.00 0.00 0.00 4.94
1685 2828 5.429681 TCTTCCCTTTTATCATTCCGTGA 57.570 39.130 0.00 0.00 42.06 4.35
1687 2830 7.131907 TCTTCCCTTTTATCATTCCGTGATA 57.868 36.000 0.00 0.00 45.67 2.15
1696 2839 3.977427 TCATTCCGTGATAGTGATTCGG 58.023 45.455 0.00 0.00 42.12 4.30
1697 2840 2.218953 TTCCGTGATAGTGATTCGGC 57.781 50.000 0.00 0.00 40.81 5.54
1698 2841 0.387929 TCCGTGATAGTGATTCGGCC 59.612 55.000 0.00 0.00 40.81 6.13
1699 2842 0.104120 CCGTGATAGTGATTCGGCCA 59.896 55.000 2.24 0.00 35.01 5.36
1700 2843 1.472552 CCGTGATAGTGATTCGGCCAA 60.473 52.381 2.24 0.00 35.01 4.52
1701 2844 2.276201 CGTGATAGTGATTCGGCCAAA 58.724 47.619 2.24 0.00 0.00 3.28
1702 2845 2.030457 CGTGATAGTGATTCGGCCAAAC 59.970 50.000 2.24 0.00 0.00 2.93
1703 2846 2.354821 GTGATAGTGATTCGGCCAAACC 59.645 50.000 2.24 0.00 0.00 3.27
1704 2847 2.238646 TGATAGTGATTCGGCCAAACCT 59.761 45.455 2.24 0.00 35.61 3.50
1705 2848 2.396590 TAGTGATTCGGCCAAACCTC 57.603 50.000 2.24 0.00 35.61 3.85
1707 2850 2.038269 TGATTCGGCCAAACCTCGC 61.038 57.895 2.24 0.00 35.61 5.03
1713 2856 4.090057 GCCAAACCTCGCGCTGTC 62.090 66.667 5.56 0.00 0.00 3.51
1714 2857 3.777925 CCAAACCTCGCGCTGTCG 61.778 66.667 5.56 0.00 39.07 4.35
1715 2858 3.036084 CAAACCTCGCGCTGTCGT 61.036 61.111 5.56 0.00 38.14 4.34
1716 2859 3.036084 AAACCTCGCGCTGTCGTG 61.036 61.111 5.56 0.00 46.68 4.35
1717 2860 3.785189 AAACCTCGCGCTGTCGTGT 62.785 57.895 5.56 0.00 45.60 4.49
1718 2861 4.702081 ACCTCGCGCTGTCGTGTC 62.702 66.667 5.56 0.00 45.60 3.67
1720 2863 4.406173 CTCGCGCTGTCGTGTCCT 62.406 66.667 5.56 0.00 45.60 3.85
1721 2864 4.700365 TCGCGCTGTCGTGTCCTG 62.700 66.667 5.56 0.00 45.60 3.86
1722 2865 4.700365 CGCGCTGTCGTGTCCTGA 62.700 66.667 5.56 0.00 40.97 3.86
1723 2866 2.125912 GCGCTGTCGTGTCCTGAT 60.126 61.111 0.00 0.00 38.14 2.90
1724 2867 1.738099 GCGCTGTCGTGTCCTGATT 60.738 57.895 0.00 0.00 38.14 2.57
1725 2868 1.291877 GCGCTGTCGTGTCCTGATTT 61.292 55.000 0.00 0.00 38.14 2.17
1726 2869 1.148310 CGCTGTCGTGTCCTGATTTT 58.852 50.000 0.00 0.00 0.00 1.82
1727 2870 1.531149 CGCTGTCGTGTCCTGATTTTT 59.469 47.619 0.00 0.00 0.00 1.94
1732 2875 5.407387 GCTGTCGTGTCCTGATTTTTACTTA 59.593 40.000 0.00 0.00 0.00 2.24
1740 2883 9.821662 GTGTCCTGATTTTTACTTACACATAAC 57.178 33.333 0.00 0.00 36.77 1.89
1750 2893 7.878477 TTACTTACACATAACACAGTGCTAC 57.122 36.000 0.00 0.00 39.30 3.58
1777 2927 5.129634 TGCTCACAATTGGTCTGTCTTTAA 58.870 37.500 10.83 0.00 0.00 1.52
1781 2931 7.308830 GCTCACAATTGGTCTGTCTTTAATTCT 60.309 37.037 10.83 0.00 0.00 2.40
1782 2932 7.874940 TCACAATTGGTCTGTCTTTAATTCTG 58.125 34.615 10.83 0.00 0.00 3.02
1783 2933 7.502226 TCACAATTGGTCTGTCTTTAATTCTGT 59.498 33.333 10.83 0.00 0.00 3.41
1784 2934 8.783093 CACAATTGGTCTGTCTTTAATTCTGTA 58.217 33.333 10.83 0.00 0.00 2.74
1932 3082 0.397941 TGCTTGCTACTTCACTGGCT 59.602 50.000 0.00 0.00 0.00 4.75
1998 3148 3.521947 GGGACGTCTTGCTTATACTGT 57.478 47.619 16.46 0.00 0.00 3.55
2061 3211 2.684881 ACTGAAGGTGTGTGCTTTTCTG 59.315 45.455 0.00 0.00 0.00 3.02
2069 3223 5.359576 AGGTGTGTGCTTTTCTGAAACATAA 59.640 36.000 1.58 0.00 0.00 1.90
2075 3229 3.361940 GCTTTTCTGAAACATAACAGCGC 59.638 43.478 0.00 0.00 34.57 5.92
2076 3230 4.536065 CTTTTCTGAAACATAACAGCGCA 58.464 39.130 11.47 0.00 34.57 6.09
2126 3280 0.320374 TCAAGTAGCCCGTCCAACTG 59.680 55.000 0.00 0.00 0.00 3.16
2177 3332 0.250945 TTGGCTTGGCACGTATCCAA 60.251 50.000 17.29 17.29 40.98 3.53
2258 3413 6.996879 ACTCATATAGTTCGGCTACTACTCAA 59.003 38.462 0.00 0.00 33.35 3.02
2292 3447 5.794894 GAGACTTCCTCTCACATTGGTTAA 58.205 41.667 0.00 0.00 44.62 2.01
2316 3471 1.750206 CGTTGAATGATGGGATTGCCA 59.250 47.619 0.00 0.00 35.15 4.92
2381 3537 1.136057 GGAAGTTTCATCGAACGTGCC 60.136 52.381 0.00 0.00 34.74 5.01
2382 3538 1.529438 GAAGTTTCATCGAACGTGCCA 59.471 47.619 0.00 0.00 34.74 4.92
2524 3680 7.439157 TGAGGTCAATGTGAATTTTAGTCTG 57.561 36.000 0.00 0.00 0.00 3.51
2544 3700 5.119743 GTCTGCGTAGTTCGTTTCCTTTAAT 59.880 40.000 0.00 0.00 42.13 1.40
2551 3707 8.205948 CGTAGTTCGTTTCCTTTAATATCATCG 58.794 37.037 0.00 0.00 34.52 3.84
2605 3762 4.870123 TTTATGCAGCACAGGTGATTTT 57.130 36.364 0.00 0.00 32.22 1.82
2614 3771 6.676456 GCAGCACAGGTGATTTTGTATTAGAG 60.676 42.308 3.10 0.00 32.22 2.43
2796 3953 8.373220 ACAGCTTTTAATAGTTACTACCACAGT 58.627 33.333 0.00 0.00 41.62 3.55
2810 3967 1.464608 CCACAGTACCTGATTGTTGCG 59.535 52.381 0.00 0.00 35.18 4.85
3075 4234 7.451255 TCCATTAAAGTTCAAGTCCATGATGTT 59.549 33.333 0.00 0.00 0.00 2.71
3116 4275 4.819630 TGTTGAGGCACGATTTAAGTTCTT 59.180 37.500 0.00 0.00 0.00 2.52
3125 4284 4.219033 CGATTTAAGTTCTTGGTGCACAC 58.781 43.478 20.43 7.72 0.00 3.82
3163 4322 0.473755 TGGGCACACACTGAATCTGT 59.526 50.000 0.00 0.00 0.00 3.41
3200 4359 5.209818 TGACATCCTCTGTTTTACTTCGT 57.790 39.130 0.00 0.00 38.54 3.85
3498 4657 1.956477 GAGAGCTCTCTAGAGGCAAGG 59.044 57.143 32.25 12.03 42.29 3.61
3618 4777 6.708949 ACTAAATACAACCACTAACCACTGTG 59.291 38.462 0.00 0.00 0.00 3.66
3662 4822 0.107081 TTGTTCCACCGTCGAATGGT 59.893 50.000 13.29 4.80 38.21 3.55
3703 4866 1.826720 GGGGGTGAATGTACTACGACA 59.173 52.381 0.00 0.00 0.00 4.35
3732 5010 1.532868 GAGCCTGTAGTTTGTGCTGTG 59.467 52.381 0.00 0.00 31.23 3.66
3749 5027 3.403038 CTGTGAAACTTGTAGTCCTGGG 58.597 50.000 0.00 0.00 38.04 4.45
3771 5049 4.095334 GGAAACCACACAGTTTTCGTAGTT 59.905 41.667 0.00 0.00 40.01 2.24
3773 5051 4.133013 ACCACACAGTTTTCGTAGTTCT 57.867 40.909 0.00 0.00 0.00 3.01
3774 5052 4.117685 ACCACACAGTTTTCGTAGTTCTC 58.882 43.478 0.00 0.00 0.00 2.87
3775 5053 3.181774 CCACACAGTTTTCGTAGTTCTCG 59.818 47.826 0.00 0.00 0.00 4.04
3779 5057 4.146616 CACAGTTTTCGTAGTTCTCGAGTG 59.853 45.833 13.13 0.69 38.52 3.51
3802 5080 5.301551 TGATACTTTGCACTTGGACATTTGT 59.698 36.000 0.00 0.00 0.00 2.83
3844 5122 1.303643 GTGCCCTCCACCCTTTGAG 60.304 63.158 0.00 0.00 38.55 3.02
3851 5129 1.618837 CTCCACCCTTTGAGACGAAGA 59.381 52.381 0.00 0.00 0.00 2.87
3868 5146 0.612744 AGAGTTTCTGCTCTCTGGGC 59.387 55.000 0.00 0.00 41.62 5.36
3895 5173 1.407989 GGGAATTCCTGAGCTCCACAG 60.408 57.143 23.63 2.22 35.95 3.66
3915 5193 2.361119 AGCGTCGATAGTTGAGCCATTA 59.639 45.455 0.00 0.00 37.40 1.90
3923 5201 8.276325 GTCGATAGTTGAGCCATTAATACTTTG 58.724 37.037 0.00 0.00 37.40 2.77
3929 5207 6.266168 TGAGCCATTAATACTTTGTTGGTG 57.734 37.500 0.00 0.00 0.00 4.17
3951 5229 6.071952 GGTGAAACTGAATTTTCTGCCTGATA 60.072 38.462 0.00 0.00 36.58 2.15
4019 5298 1.630244 CTGAAGCAAAGCCGTCTCCG 61.630 60.000 0.00 0.00 0.00 4.63
4043 5322 5.072129 TCCCCAAAACATATGGATATGCA 57.928 39.130 7.80 0.00 42.98 3.96
4055 5336 4.880886 TGGATATGCAAATTCACTCGTG 57.119 40.909 0.00 0.00 0.00 4.35
4175 5457 1.583054 GACATATGCACTTCGGGGTC 58.417 55.000 1.58 0.00 0.00 4.46
4189 5471 1.712018 GGGGTCGCGGAAAATGTAGC 61.712 60.000 6.13 0.00 0.00 3.58
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 1.522580 GAACATCCAGAGGCCGAGC 60.523 63.158 0.00 0.00 0.00 5.03
169 170 2.743126 ACGAAACAAAAGACACCACGAA 59.257 40.909 0.00 0.00 0.00 3.85
170 171 2.348660 ACGAAACAAAAGACACCACGA 58.651 42.857 0.00 0.00 0.00 4.35
171 172 2.817538 ACGAAACAAAAGACACCACG 57.182 45.000 0.00 0.00 0.00 4.94
172 173 4.086199 TGAACGAAACAAAAGACACCAC 57.914 40.909 0.00 0.00 0.00 4.16
174 175 4.351131 ACTGAACGAAACAAAAGACACC 57.649 40.909 0.00 0.00 0.00 4.16
217 222 1.274447 ACCAGTTTAGCACCGTACTCC 59.726 52.381 0.00 0.00 0.00 3.85
228 233 4.115516 CACGGAGATCATCACCAGTTTAG 58.884 47.826 1.70 0.00 0.00 1.85
230 235 2.303022 ACACGGAGATCATCACCAGTTT 59.697 45.455 1.70 0.00 0.00 2.66
266 276 2.104963 GAGCTCCCCGAAATCCTGTAAT 59.895 50.000 0.87 0.00 0.00 1.89
267 277 1.485066 GAGCTCCCCGAAATCCTGTAA 59.515 52.381 0.87 0.00 0.00 2.41
268 278 1.120530 GAGCTCCCCGAAATCCTGTA 58.879 55.000 0.87 0.00 0.00 2.74
281 291 2.959071 GACAGCGCGATGAGCTCC 60.959 66.667 33.25 10.27 44.06 4.70
296 306 0.398318 AGGTCACCAGCAAGAAGGAC 59.602 55.000 0.00 0.00 0.00 3.85
409 419 7.148188 ACGCATGTTCTCATTTTCAATACTGAT 60.148 33.333 0.00 0.00 31.15 2.90
411 421 6.249893 CACGCATGTTCTCATTTTCAATACTG 59.750 38.462 0.00 0.00 31.15 2.74
412 422 6.072508 ACACGCATGTTCTCATTTTCAATACT 60.073 34.615 0.00 0.00 34.46 2.12
414 424 6.085573 CACACGCATGTTCTCATTTTCAATA 58.914 36.000 0.00 0.00 36.72 1.90
415 425 4.919168 CACACGCATGTTCTCATTTTCAAT 59.081 37.500 0.00 0.00 36.72 2.57
417 427 3.852939 GCACACGCATGTTCTCATTTTCA 60.853 43.478 0.00 0.00 36.72 2.69
449 585 9.901724 CTACTGCTACTACAAAATTACAAATCG 57.098 33.333 0.00 0.00 0.00 3.34
459 595 8.479689 TGGCATTATACTACTGCTACTACAAAA 58.520 33.333 0.00 0.00 36.18 2.44
467 603 5.745312 AGCATGGCATTATACTACTGCTA 57.255 39.130 4.76 0.00 36.98 3.49
470 606 8.783833 AATCTAAGCATGGCATTATACTACTG 57.216 34.615 0.00 0.00 0.00 2.74
475 611 8.616076 GTCCATAATCTAAGCATGGCATTATAC 58.384 37.037 0.00 0.00 39.30 1.47
476 612 7.775093 GGTCCATAATCTAAGCATGGCATTATA 59.225 37.037 0.00 0.00 39.30 0.98
477 613 6.604795 GGTCCATAATCTAAGCATGGCATTAT 59.395 38.462 0.00 0.00 39.30 1.28
481 617 3.498481 GGGTCCATAATCTAAGCATGGCA 60.498 47.826 0.00 0.00 39.30 4.92
482 618 3.084786 GGGTCCATAATCTAAGCATGGC 58.915 50.000 0.00 0.00 39.30 4.40
488 624 6.051717 CACTTGTCAGGGTCCATAATCTAAG 58.948 44.000 0.00 0.00 0.00 2.18
491 627 3.846588 ACACTTGTCAGGGTCCATAATCT 59.153 43.478 0.00 0.00 25.34 2.40
505 641 1.459592 GCCACACGTATGACACTTGTC 59.540 52.381 0.00 2.19 37.52 3.18
507 643 1.194547 GTGCCACACGTATGACACTTG 59.805 52.381 5.98 0.00 32.77 3.16
508 644 1.508632 GTGCCACACGTATGACACTT 58.491 50.000 5.98 0.00 0.00 3.16
519 655 1.133869 GAATTACGCCGTGCCACAC 59.866 57.895 0.00 0.00 0.00 3.82
520 656 2.036006 GGAATTACGCCGTGCCACA 61.036 57.895 0.00 0.00 0.00 4.17
521 657 2.789249 GGAATTACGCCGTGCCAC 59.211 61.111 0.00 0.00 0.00 5.01
522 658 2.816083 CGGAATTACGCCGTGCCA 60.816 61.111 0.00 0.00 43.66 4.92
528 664 1.647346 TGTCATGACGGAATTACGCC 58.353 50.000 20.54 0.00 37.37 5.68
529 665 3.944422 AATGTCATGACGGAATTACGC 57.056 42.857 20.54 3.65 37.37 4.42
550 686 6.431543 TCGGATGACTAAACTTGCCATAAAAA 59.568 34.615 0.00 0.00 0.00 1.94
552 688 5.492895 TCGGATGACTAAACTTGCCATAAA 58.507 37.500 0.00 0.00 0.00 1.40
553 689 5.092554 TCGGATGACTAAACTTGCCATAA 57.907 39.130 0.00 0.00 0.00 1.90
554 690 4.442893 CCTCGGATGACTAAACTTGCCATA 60.443 45.833 0.00 0.00 0.00 2.74
556 692 2.354704 CCTCGGATGACTAAACTTGCCA 60.355 50.000 0.00 0.00 0.00 4.92
557 693 2.093658 TCCTCGGATGACTAAACTTGCC 60.094 50.000 0.00 0.00 0.00 4.52
569 705 5.178797 AACTAAAGTTGTCATCCTCGGATG 58.821 41.667 17.85 17.85 43.43 3.51
570 706 5.422214 AACTAAAGTTGTCATCCTCGGAT 57.578 39.130 0.00 0.00 36.80 4.18
591 727 6.161855 ACAGAGAGTTGTCATACTTCACAA 57.838 37.500 0.00 0.00 0.00 3.33
592 728 5.791336 ACAGAGAGTTGTCATACTTCACA 57.209 39.130 0.00 0.00 0.00 3.58
593 729 6.073548 CCAAACAGAGAGTTGTCATACTTCAC 60.074 42.308 0.00 0.00 41.19 3.18
594 730 5.991606 CCAAACAGAGAGTTGTCATACTTCA 59.008 40.000 0.00 0.00 41.19 3.02
595 731 6.223852 TCCAAACAGAGAGTTGTCATACTTC 58.776 40.000 0.00 0.00 41.19 3.01
596 732 6.174720 TCCAAACAGAGAGTTGTCATACTT 57.825 37.500 0.00 0.00 41.19 2.24
598 734 6.256757 GCTATCCAAACAGAGAGTTGTCATAC 59.743 42.308 0.00 0.00 41.19 2.39
600 736 5.181748 GCTATCCAAACAGAGAGTTGTCAT 58.818 41.667 0.00 0.00 41.19 3.06
601 737 4.040339 TGCTATCCAAACAGAGAGTTGTCA 59.960 41.667 0.00 0.00 41.19 3.58
602 738 4.569943 TGCTATCCAAACAGAGAGTTGTC 58.430 43.478 0.00 0.00 41.19 3.18
603 739 4.623932 TGCTATCCAAACAGAGAGTTGT 57.376 40.909 0.00 0.00 41.19 3.32
604 740 4.999950 ACTTGCTATCCAAACAGAGAGTTG 59.000 41.667 0.00 0.00 41.19 3.16
605 741 5.234466 ACTTGCTATCCAAACAGAGAGTT 57.766 39.130 0.00 0.00 43.89 3.01
607 743 5.702670 TGAAACTTGCTATCCAAACAGAGAG 59.297 40.000 0.00 0.00 31.94 3.20
608 744 5.620206 TGAAACTTGCTATCCAAACAGAGA 58.380 37.500 0.00 0.00 31.94 3.10
609 745 5.471456 ACTGAAACTTGCTATCCAAACAGAG 59.529 40.000 0.00 0.00 31.94 3.35
610 746 5.376625 ACTGAAACTTGCTATCCAAACAGA 58.623 37.500 0.00 0.00 31.94 3.41
611 747 5.695851 ACTGAAACTTGCTATCCAAACAG 57.304 39.130 0.00 0.00 31.94 3.16
613 749 7.770801 AAAAACTGAAACTTGCTATCCAAAC 57.229 32.000 0.00 0.00 31.94 2.93
677 813 0.755327 AAGTGTCAGGCCGCCTTTTT 60.755 50.000 9.99 0.00 0.00 1.94
678 814 0.109723 TAAGTGTCAGGCCGCCTTTT 59.890 50.000 9.99 2.41 0.00 2.27
679 815 0.328258 ATAAGTGTCAGGCCGCCTTT 59.672 50.000 9.99 3.65 0.00 3.11
680 816 0.107654 GATAAGTGTCAGGCCGCCTT 60.108 55.000 9.99 0.00 0.00 4.35
681 817 1.264749 TGATAAGTGTCAGGCCGCCT 61.265 55.000 5.94 5.94 0.00 5.52
682 818 0.179045 ATGATAAGTGTCAGGCCGCC 60.179 55.000 0.00 0.00 0.00 6.13
683 819 1.668419 AATGATAAGTGTCAGGCCGC 58.332 50.000 0.00 0.00 0.00 6.53
684 820 2.355756 CCAAATGATAAGTGTCAGGCCG 59.644 50.000 0.00 0.00 0.00 6.13
685 821 2.689983 CCCAAATGATAAGTGTCAGGCC 59.310 50.000 0.00 0.00 0.00 5.19
686 822 3.356290 ACCCAAATGATAAGTGTCAGGC 58.644 45.455 0.00 0.00 0.00 4.85
687 823 5.989477 TCTACCCAAATGATAAGTGTCAGG 58.011 41.667 0.00 0.00 0.00 3.86
688 824 9.784531 ATAATCTACCCAAATGATAAGTGTCAG 57.215 33.333 0.00 0.00 0.00 3.51
694 830 9.155975 CGGAGAATAATCTACCCAAATGATAAG 57.844 37.037 0.00 0.00 35.54 1.73
695 831 8.876181 TCGGAGAATAATCTACCCAAATGATAA 58.124 33.333 0.00 0.00 35.54 1.75
696 832 8.311836 GTCGGAGAATAATCTACCCAAATGATA 58.688 37.037 0.00 0.00 39.69 2.15
697 833 7.016661 AGTCGGAGAATAATCTACCCAAATGAT 59.983 37.037 0.00 0.00 39.69 2.45
698 834 6.326583 AGTCGGAGAATAATCTACCCAAATGA 59.673 38.462 0.00 0.00 39.69 2.57
699 835 6.525629 AGTCGGAGAATAATCTACCCAAATG 58.474 40.000 0.00 0.00 39.69 2.32
700 836 6.749036 AGTCGGAGAATAATCTACCCAAAT 57.251 37.500 0.00 0.00 39.69 2.32
701 837 6.555463 AAGTCGGAGAATAATCTACCCAAA 57.445 37.500 0.00 0.00 39.69 3.28
702 838 6.383147 AGAAAGTCGGAGAATAATCTACCCAA 59.617 38.462 0.00 0.00 39.69 4.12
706 1819 8.705048 AACAAGAAAGTCGGAGAATAATCTAC 57.295 34.615 0.00 0.00 39.69 2.59
708 1821 8.622948 AAAACAAGAAAGTCGGAGAATAATCT 57.377 30.769 0.00 0.00 39.69 2.40
720 1833 7.484140 ACTGAAATCCAGAAAACAAGAAAGTC 58.516 34.615 0.00 0.00 45.78 3.01
732 1845 7.448161 TGCAGAAGAAAATACTGAAATCCAGAA 59.552 33.333 0.00 0.00 45.78 3.02
761 1874 1.056660 GGGAGATGGCGGGAATTCTA 58.943 55.000 5.23 0.00 0.00 2.10
802 1921 8.469309 TCTTTTCAATTTCTGTTTCTGGAGAT 57.531 30.769 0.00 0.00 0.00 2.75
803 1922 7.880160 TCTTTTCAATTTCTGTTTCTGGAGA 57.120 32.000 0.00 0.00 0.00 3.71
804 1923 8.931385 TTTCTTTTCAATTTCTGTTTCTGGAG 57.069 30.769 0.00 0.00 0.00 3.86
805 1924 9.717942 TTTTTCTTTTCAATTTCTGTTTCTGGA 57.282 25.926 0.00 0.00 0.00 3.86
913 2032 3.818121 TTCTGTGGGCCACGGTTCG 62.818 63.158 37.44 20.52 41.12 3.95
917 2036 2.669569 CTGTTCTGTGGGCCACGG 60.670 66.667 34.99 34.99 41.65 4.94
918 2037 1.961277 GACTGTTCTGTGGGCCACG 60.961 63.158 30.14 23.70 37.14 4.94
940 2059 1.605971 CTCAGGCTCAGCTCTCTGCA 61.606 60.000 0.00 0.00 45.94 4.41
942 2061 1.142314 GCTCAGGCTCAGCTCTCTG 59.858 63.158 1.97 0.00 41.67 3.35
943 2062 2.417257 CGCTCAGGCTCAGCTCTCT 61.417 63.158 9.21 0.00 34.45 3.10
944 2063 2.104729 CGCTCAGGCTCAGCTCTC 59.895 66.667 9.21 0.00 34.45 3.20
945 2064 3.459965 CCGCTCAGGCTCAGCTCT 61.460 66.667 9.21 0.00 34.45 4.09
946 2065 3.714871 GACCGCTCAGGCTCAGCTC 62.715 68.421 9.21 0.00 46.52 4.09
947 2066 3.768922 GACCGCTCAGGCTCAGCT 61.769 66.667 9.21 0.00 46.52 4.24
948 2067 4.074526 TGACCGCTCAGGCTCAGC 62.075 66.667 0.00 0.00 46.52 4.26
949 2068 2.183811 CTGACCGCTCAGGCTCAG 59.816 66.667 0.00 0.00 46.52 3.35
960 2079 3.443925 TGAGAGCTCGCCTGACCG 61.444 66.667 15.29 0.00 0.00 4.79
1017 2136 1.388837 GGAAGGAGACGGAGAGAGCC 61.389 65.000 0.00 0.00 0.00 4.70
1083 2205 3.186047 CTTACCTTGACGCGCGGG 61.186 66.667 35.22 26.61 0.00 6.13
1103 2225 2.279918 GAAGTGCGGACGGTGTGT 60.280 61.111 0.00 0.00 0.00 3.72
1133 2258 4.207281 CGGAATCAGAGGGCGCGA 62.207 66.667 12.10 0.00 0.00 5.87
1138 2263 1.522569 GGACCACGGAATCAGAGGG 59.477 63.158 1.97 0.00 0.00 4.30
1313 2438 0.970937 CTGAGGTAGCCGGTCTCCAA 60.971 60.000 1.90 0.00 0.00 3.53
1463 2596 5.864474 AGTACAAATGTGCGACTTCTAGAAG 59.136 40.000 27.41 27.41 38.72 2.85
1468 2601 2.480419 GCAGTACAAATGTGCGACTTCT 59.520 45.455 0.00 0.00 35.74 2.85
1469 2602 2.480419 AGCAGTACAAATGTGCGACTTC 59.520 45.455 0.00 0.00 42.26 3.01
1472 2605 2.412847 GGAAGCAGTACAAATGTGCGAC 60.413 50.000 0.00 0.00 42.26 5.19
1473 2606 1.804151 GGAAGCAGTACAAATGTGCGA 59.196 47.619 0.00 0.00 42.26 5.10
1474 2607 1.464023 CGGAAGCAGTACAAATGTGCG 60.464 52.381 0.00 0.00 42.26 5.34
1475 2608 1.535462 ACGGAAGCAGTACAAATGTGC 59.465 47.619 0.00 0.00 37.48 4.57
1476 2609 3.003275 ACAACGGAAGCAGTACAAATGTG 59.997 43.478 0.00 0.00 0.00 3.21
1477 2610 3.003275 CACAACGGAAGCAGTACAAATGT 59.997 43.478 0.00 0.00 0.00 2.71
1478 2611 3.554524 CACAACGGAAGCAGTACAAATG 58.445 45.455 0.00 0.00 0.00 2.32
1479 2612 2.031157 GCACAACGGAAGCAGTACAAAT 60.031 45.455 0.00 0.00 0.00 2.32
1480 2613 1.332375 GCACAACGGAAGCAGTACAAA 59.668 47.619 0.00 0.00 0.00 2.83
1492 2625 0.030504 TGACAATGCAAGCACAACGG 59.969 50.000 0.00 0.00 0.00 4.44
1494 2627 2.497107 ACTGACAATGCAAGCACAAC 57.503 45.000 0.00 0.00 0.00 3.32
1497 2630 3.837213 ACATACTGACAATGCAAGCAC 57.163 42.857 0.00 0.00 0.00 4.40
1519 2652 5.989477 TCCTCAATACACAATCCTACCTTG 58.011 41.667 0.00 0.00 0.00 3.61
1520 2653 5.131142 CCTCCTCAATACACAATCCTACCTT 59.869 44.000 0.00 0.00 0.00 3.50
1540 2677 8.655901 AGAGAGGAAATTGACTATTTATCCTCC 58.344 37.037 18.82 13.50 44.46 4.30
1546 2683 8.630917 CGGACTAGAGAGGAAATTGACTATTTA 58.369 37.037 0.00 0.00 36.59 1.40
1547 2684 7.124448 ACGGACTAGAGAGGAAATTGACTATTT 59.876 37.037 0.00 0.00 39.15 1.40
1548 2685 6.608002 ACGGACTAGAGAGGAAATTGACTATT 59.392 38.462 0.00 0.00 0.00 1.73
1549 2686 6.130569 ACGGACTAGAGAGGAAATTGACTAT 58.869 40.000 0.00 0.00 0.00 2.12
1550 2687 5.507637 ACGGACTAGAGAGGAAATTGACTA 58.492 41.667 0.00 0.00 0.00 2.59
1551 2688 4.345854 ACGGACTAGAGAGGAAATTGACT 58.654 43.478 0.00 0.00 0.00 3.41
1552 2689 4.722361 ACGGACTAGAGAGGAAATTGAC 57.278 45.455 0.00 0.00 0.00 3.18
1553 2690 5.357314 CAGTACGGACTAGAGAGGAAATTGA 59.643 44.000 0.00 0.00 33.32 2.57
1554 2691 5.357314 TCAGTACGGACTAGAGAGGAAATTG 59.643 44.000 0.00 0.00 33.32 2.32
1555 2692 5.507637 TCAGTACGGACTAGAGAGGAAATT 58.492 41.667 0.00 0.00 33.32 1.82
1556 2693 5.104444 TCTCAGTACGGACTAGAGAGGAAAT 60.104 44.000 19.72 0.00 36.13 2.17
1557 2694 4.224594 TCTCAGTACGGACTAGAGAGGAAA 59.775 45.833 19.72 4.49 36.13 3.13
1558 2695 3.773667 TCTCAGTACGGACTAGAGAGGAA 59.226 47.826 19.72 4.77 36.13 3.36
1559 2696 3.372897 TCTCAGTACGGACTAGAGAGGA 58.627 50.000 19.72 4.82 36.13 3.71
1560 2697 3.724374 CTCTCAGTACGGACTAGAGAGG 58.276 54.545 30.31 19.98 44.25 3.69
1561 2698 3.128349 GCTCTCAGTACGGACTAGAGAG 58.872 54.545 31.93 31.93 46.87 3.20
1562 2699 2.767394 AGCTCTCAGTACGGACTAGAGA 59.233 50.000 25.86 23.63 37.44 3.10
1563 2700 3.188159 AGCTCTCAGTACGGACTAGAG 57.812 52.381 20.98 20.98 36.96 2.43
1564 2701 3.630892 AAGCTCTCAGTACGGACTAGA 57.369 47.619 0.00 3.40 33.32 2.43
1565 2702 3.249080 GCTAAGCTCTCAGTACGGACTAG 59.751 52.174 0.00 0.00 33.32 2.57
1566 2703 3.204526 GCTAAGCTCTCAGTACGGACTA 58.795 50.000 0.00 0.00 33.32 2.59
1567 2704 2.018515 GCTAAGCTCTCAGTACGGACT 58.981 52.381 0.00 0.00 35.80 3.85
1568 2705 1.065851 GGCTAAGCTCTCAGTACGGAC 59.934 57.143 0.00 0.00 0.00 4.79
1569 2706 1.340697 TGGCTAAGCTCTCAGTACGGA 60.341 52.381 0.00 0.00 0.00 4.69
1570 2707 1.103803 TGGCTAAGCTCTCAGTACGG 58.896 55.000 0.00 0.00 0.00 4.02
1571 2708 1.202313 GGTGGCTAAGCTCTCAGTACG 60.202 57.143 0.00 0.00 0.00 3.67
1572 2709 2.104170 AGGTGGCTAAGCTCTCAGTAC 58.896 52.381 0.00 0.00 27.29 2.73
1573 2710 2.534042 AGGTGGCTAAGCTCTCAGTA 57.466 50.000 0.00 0.00 27.29 2.74
1574 2711 1.552792 GAAGGTGGCTAAGCTCTCAGT 59.447 52.381 0.00 0.00 34.84 3.41
1575 2712 1.470632 CGAAGGTGGCTAAGCTCTCAG 60.471 57.143 0.00 0.00 34.84 3.35
1576 2713 0.532573 CGAAGGTGGCTAAGCTCTCA 59.467 55.000 0.00 0.00 34.84 3.27
1577 2714 0.818296 TCGAAGGTGGCTAAGCTCTC 59.182 55.000 0.00 0.00 34.84 3.20
1578 2715 0.820871 CTCGAAGGTGGCTAAGCTCT 59.179 55.000 0.00 0.00 34.84 4.09
1579 2716 0.818296 TCTCGAAGGTGGCTAAGCTC 59.182 55.000 0.00 0.00 34.84 4.09
1580 2717 1.490574 ATCTCGAAGGTGGCTAAGCT 58.509 50.000 0.00 0.00 38.63 3.74
1581 2718 2.205911 GAATCTCGAAGGTGGCTAAGC 58.794 52.381 0.00 0.00 0.00 3.09
1591 2728 6.096036 ACAGAATACACACTGAATCTCGAAG 58.904 40.000 0.00 0.00 37.54 3.79
1600 2737 6.295249 TGATTTGGAACAGAATACACACTGA 58.705 36.000 0.00 0.00 42.39 3.41
1602 2739 7.149569 CATGATTTGGAACAGAATACACACT 57.850 36.000 0.00 0.00 42.39 3.55
1655 2798 7.039223 GGAATGATAAAAGGGAAGATCATGCAT 60.039 37.037 0.00 0.00 38.67 3.96
1657 2800 6.569226 CGGAATGATAAAAGGGAAGATCATGC 60.569 42.308 0.00 0.00 38.67 4.06
1658 2801 6.488006 ACGGAATGATAAAAGGGAAGATCATG 59.512 38.462 0.00 0.00 38.67 3.07
1663 2806 5.429681 TCACGGAATGATAAAAGGGAAGA 57.570 39.130 0.00 0.00 29.99 2.87
1681 2824 1.934589 TTGGCCGAATCACTATCACG 58.065 50.000 0.00 0.00 0.00 4.35
1683 2826 2.238646 AGGTTTGGCCGAATCACTATCA 59.761 45.455 18.59 0.00 43.70 2.15
1684 2827 2.872858 GAGGTTTGGCCGAATCACTATC 59.127 50.000 18.59 3.04 43.70 2.08
1685 2828 2.741878 CGAGGTTTGGCCGAATCACTAT 60.742 50.000 18.59 0.00 43.70 2.12
1687 2830 0.673644 CGAGGTTTGGCCGAATCACT 60.674 55.000 18.59 12.29 43.70 3.41
1689 2832 2.038269 GCGAGGTTTGGCCGAATCA 61.038 57.895 18.59 0.00 43.70 2.57
1690 2833 2.791927 GCGAGGTTTGGCCGAATC 59.208 61.111 9.15 8.59 43.70 2.52
1691 2834 3.124921 CGCGAGGTTTGGCCGAAT 61.125 61.111 9.15 0.00 43.70 3.34
1696 2839 4.090057 GACAGCGCGAGGTTTGGC 62.090 66.667 12.10 0.00 41.81 4.52
1697 2840 3.777925 CGACAGCGCGAGGTTTGG 61.778 66.667 12.10 0.00 41.81 3.28
1698 2841 3.036084 ACGACAGCGCGAGGTTTG 61.036 61.111 12.10 6.27 41.81 2.93
1699 2842 3.036084 CACGACAGCGCGAGGTTT 61.036 61.111 12.10 0.00 41.81 3.27
1700 2843 4.280494 ACACGACAGCGCGAGGTT 62.280 61.111 12.10 0.00 41.81 3.50
1701 2844 4.702081 GACACGACAGCGCGAGGT 62.702 66.667 12.10 6.53 46.81 3.85
1703 2846 4.406173 AGGACACGACAGCGCGAG 62.406 66.667 12.10 3.23 42.48 5.03
1704 2847 4.700365 CAGGACACGACAGCGCGA 62.700 66.667 12.10 0.00 42.48 5.87
1705 2848 3.971453 ATCAGGACACGACAGCGCG 62.971 63.158 0.00 0.00 42.48 6.86
1707 2850 1.148310 AAAATCAGGACACGACAGCG 58.852 50.000 0.00 0.00 44.79 5.18
1709 2852 5.924475 AAGTAAAAATCAGGACACGACAG 57.076 39.130 0.00 0.00 0.00 3.51
1711 2854 6.201425 TGTGTAAGTAAAAATCAGGACACGAC 59.799 38.462 0.00 0.00 38.98 4.34
1712 2855 6.282167 TGTGTAAGTAAAAATCAGGACACGA 58.718 36.000 0.00 0.00 38.98 4.35
1713 2856 6.533819 TGTGTAAGTAAAAATCAGGACACG 57.466 37.500 0.00 0.00 38.98 4.49
1714 2857 9.821662 GTTATGTGTAAGTAAAAATCAGGACAC 57.178 33.333 0.00 0.00 37.15 3.67
1715 2858 9.562408 TGTTATGTGTAAGTAAAAATCAGGACA 57.438 29.630 0.00 0.00 0.00 4.02
1716 2859 9.821662 GTGTTATGTGTAAGTAAAAATCAGGAC 57.178 33.333 0.00 0.00 0.00 3.85
1717 2860 9.562408 TGTGTTATGTGTAAGTAAAAATCAGGA 57.438 29.630 0.00 0.00 0.00 3.86
1718 2861 9.825972 CTGTGTTATGTGTAAGTAAAAATCAGG 57.174 33.333 0.00 0.00 0.00 3.86
1721 2864 9.113876 GCACTGTGTTATGTGTAAGTAAAAATC 57.886 33.333 9.86 0.00 36.63 2.17
1722 2865 8.846211 AGCACTGTGTTATGTGTAAGTAAAAAT 58.154 29.630 9.86 0.00 36.63 1.82
1723 2866 8.215926 AGCACTGTGTTATGTGTAAGTAAAAA 57.784 30.769 9.86 0.00 36.63 1.94
1724 2867 7.795482 AGCACTGTGTTATGTGTAAGTAAAA 57.205 32.000 9.86 0.00 36.63 1.52
1725 2868 7.115236 CGTAGCACTGTGTTATGTGTAAGTAAA 59.885 37.037 13.71 0.00 36.63 2.01
1726 2869 6.583427 CGTAGCACTGTGTTATGTGTAAGTAA 59.417 38.462 13.71 0.00 36.63 2.24
1727 2870 6.088173 CGTAGCACTGTGTTATGTGTAAGTA 58.912 40.000 13.71 0.00 36.63 2.24
1732 2875 2.297880 TCCGTAGCACTGTGTTATGTGT 59.702 45.455 18.51 0.00 36.63 3.72
1740 2883 0.108662 TGAGCATCCGTAGCACTGTG 60.109 55.000 2.76 2.76 0.00 3.66
1750 2893 1.399440 CAGACCAATTGTGAGCATCCG 59.601 52.381 4.43 0.00 0.00 4.18
1932 3082 6.203915 TGAAAAGAAAATAAGCACTCGCAGTA 59.796 34.615 0.00 0.00 42.27 2.74
1998 3148 6.265422 TGAAGGAGATAAATGCTGACGATAGA 59.735 38.462 0.00 0.00 41.38 1.98
2061 3211 3.375299 AGAGGAATGCGCTGTTATGTTTC 59.625 43.478 9.73 0.00 0.00 2.78
2069 3223 1.002430 TGAAGAAGAGGAATGCGCTGT 59.998 47.619 9.73 0.00 0.00 4.40
2177 3332 5.652452 AGCTAACTGAAGACCAACAAACTTT 59.348 36.000 0.00 0.00 0.00 2.66
2258 3413 4.439860 AGAGGAAGTCTCACCCCTTTAAT 58.560 43.478 0.00 0.00 44.81 1.40
2292 3447 4.037923 GGCAATCCCATCATTCAACGTTAT 59.962 41.667 0.00 0.00 0.00 1.89
2316 3471 6.910433 CGCCTTATAATTTGTATTTTCGCTGT 59.090 34.615 0.00 0.00 0.00 4.40
2350 3505 6.001460 TCGATGAAACTTCCAAGTAAATGGT 58.999 36.000 0.00 0.00 41.46 3.55
2362 3518 1.529438 TGGCACGTTCGATGAAACTTC 59.471 47.619 0.00 0.00 0.00 3.01
2477 3633 6.213195 TCAAATCAAAATGGCTGGTTCCTAAT 59.787 34.615 0.00 0.00 0.00 1.73
2524 3680 7.225523 TGATATTAAAGGAAACGAACTACGC 57.774 36.000 0.00 0.00 46.94 4.42
2544 3700 7.511959 AGTCTATTAGTCACTTGCGATGATA 57.488 36.000 0.00 0.00 0.00 2.15
2551 3707 9.600646 GAAAAAGAAAGTCTATTAGTCACTTGC 57.399 33.333 0.00 0.00 30.63 4.01
2605 3762 7.047891 CCTCTGTTTTGTATGGCTCTAATACA 58.952 38.462 0.00 0.00 38.44 2.29
2614 3771 5.414454 TGATGTTACCTCTGTTTTGTATGGC 59.586 40.000 0.00 0.00 0.00 4.40
2796 3953 0.036164 AGCACCGCAACAATCAGGTA 59.964 50.000 0.00 0.00 34.83 3.08
2810 3967 5.449725 GCTTCATTTTTGGAGATCTAGCACC 60.450 44.000 0.00 0.00 0.00 5.01
3075 4234 5.004448 TCAACATAAAACGCTGAATGGGTA 58.996 37.500 0.00 0.00 41.18 3.69
3125 4284 2.478370 CCAATACTGGCAGAAATGCACG 60.478 50.000 23.66 4.52 35.39 5.34
3163 4322 5.649265 AGGATGTCATCTGAGGATAAGCTA 58.351 41.667 12.54 0.00 0.00 3.32
3498 4657 2.841442 ACTACCACAAGCTTCAGGTC 57.159 50.000 19.72 0.00 35.62 3.85
3639 4799 3.625764 CCATTCGACGGTGGAACAAATAT 59.374 43.478 7.76 0.00 44.16 1.28
3650 4810 3.229156 TTCCGCACCATTCGACGGT 62.229 57.895 9.38 4.93 45.76 4.83
3651 4811 2.433491 TTCCGCACCATTCGACGG 60.433 61.111 3.66 3.66 46.97 4.79
3653 4813 1.079405 TCCTTCCGCACCATTCGAC 60.079 57.895 0.00 0.00 0.00 4.20
3662 4822 1.447838 GTTCGATGCTCCTTCCGCA 60.448 57.895 0.00 0.00 42.25 5.69
3688 4851 9.135843 CTCTACAAAAATGTCGTAGTACATTCA 57.864 33.333 0.38 0.00 46.72 2.57
3703 4866 6.515035 GCACAAACTACAGGCTCTACAAAAAT 60.515 38.462 0.00 0.00 0.00 1.82
3732 5010 3.819337 GGTTTCCCAGGACTACAAGTTTC 59.181 47.826 0.00 0.00 0.00 2.78
3749 5027 4.870221 ACTACGAAAACTGTGTGGTTTC 57.130 40.909 0.00 0.00 46.07 2.78
3758 5036 4.534168 TCACTCGAGAACTACGAAAACTG 58.466 43.478 21.68 1.68 39.23 3.16
3759 5037 4.825546 TCACTCGAGAACTACGAAAACT 57.174 40.909 21.68 0.00 39.23 2.66
3771 5049 4.237724 CAAGTGCAAAGTATCACTCGAGA 58.762 43.478 21.68 0.00 42.19 4.04
3773 5051 3.006430 TCCAAGTGCAAAGTATCACTCGA 59.994 43.478 0.00 0.00 42.19 4.04
3774 5052 3.123621 GTCCAAGTGCAAAGTATCACTCG 59.876 47.826 0.00 0.00 42.19 4.18
3775 5053 4.065088 TGTCCAAGTGCAAAGTATCACTC 58.935 43.478 0.00 0.00 42.19 3.51
3779 5057 5.772521 ACAAATGTCCAAGTGCAAAGTATC 58.227 37.500 0.00 0.00 0.00 2.24
3851 5129 1.294780 CGCCCAGAGAGCAGAAACT 59.705 57.895 0.00 0.00 0.00 2.66
3868 5146 1.808945 GCTCAGGAATTCCCATATGCG 59.191 52.381 21.22 8.79 37.41 4.73
3895 5173 1.571919 AATGGCTCAACTATCGACGC 58.428 50.000 0.00 0.00 0.00 5.19
3915 5193 9.665719 AAAATTCAGTTTCACCAACAAAGTATT 57.334 25.926 0.00 0.00 37.93 1.89
3923 5201 4.507756 GGCAGAAAATTCAGTTTCACCAAC 59.492 41.667 2.84 0.00 39.52 3.77
3929 5207 7.487189 CACATATCAGGCAGAAAATTCAGTTTC 59.513 37.037 0.00 0.00 37.70 2.78
3951 5229 3.947196 TGTGTTTCTGACTTTCTGCACAT 59.053 39.130 0.00 0.00 31.76 3.21
4019 5298 5.304101 TGCATATCCATATGTTTTGGGGAAC 59.696 40.000 1.24 0.00 41.63 3.62
4043 5322 5.828299 TTTTTCCAGACACGAGTGAATTT 57.172 34.783 10.50 0.00 0.00 1.82
4140 5422 8.006590 GTGCATATGTCGAATTTCTTAAGCTAG 58.993 37.037 4.29 0.00 0.00 3.42
4175 5457 0.572590 CTCTCGCTACATTTTCCGCG 59.427 55.000 0.00 0.00 46.28 6.46
4189 5471 2.197324 CTCCCTCCCTCCCTCTCG 59.803 72.222 0.00 0.00 0.00 4.04
4258 5540 9.860650 CCAGAGTGGCTATCTTCTATATATAGT 57.139 37.037 17.44 3.32 0.00 2.12
4270 5552 6.174049 GTTTTTAGAACCAGAGTGGCTATCT 58.826 40.000 0.00 0.00 42.67 1.98
4314 5605 9.801873 TTCACAATCCTTCAAAACTTTTCTAAG 57.198 29.630 0.00 0.00 37.40 2.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.