Multiple sequence alignment - TraesCS4D01G322700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G322700 chr4D 100.000 4995 0 0 1 4995 484661904 484656910 0.000000e+00 9225.0
1 TraesCS4D01G322700 chr5A 95.355 1550 39 13 2096 3641 665468295 665466775 0.000000e+00 2433.0
2 TraesCS4D01G322700 chr5A 85.728 1030 51 44 597 1605 665470706 665469752 0.000000e+00 1000.0
3 TraesCS4D01G322700 chr5A 91.057 615 21 8 4406 4995 665465558 665464953 0.000000e+00 800.0
4 TraesCS4D01G322700 chr5A 89.069 494 27 10 3846 4317 665466514 665466026 5.570000e-164 588.0
5 TraesCS4D01G322700 chr5A 97.452 157 3 1 19 174 665471178 665471022 2.960000e-67 267.0
6 TraesCS4D01G322700 chr5A 98.473 131 2 0 3714 3844 665466685 665466555 1.080000e-56 231.0
7 TraesCS4D01G322700 chr5A 93.182 132 8 1 1761 1892 665469186 665469056 5.100000e-45 193.0
8 TraesCS4D01G322700 chr5A 92.453 106 5 1 4315 4420 665465696 665465594 1.120000e-31 148.0
9 TraesCS4D01G322700 chr5A 91.358 81 6 1 1682 1762 496735898 496735977 5.290000e-20 110.0
10 TraesCS4D01G322700 chr4B 95.078 1544 46 10 2305 3844 616989077 616987560 0.000000e+00 2403.0
11 TraesCS4D01G322700 chr4B 90.630 651 36 12 589 1224 616991322 616990682 0.000000e+00 841.0
12 TraesCS4D01G322700 chr4B 91.532 496 19 3 3845 4317 616987521 616987026 0.000000e+00 662.0
13 TraesCS4D01G322700 chr4B 91.133 203 17 1 4453 4655 616986535 616986334 1.770000e-69 274.0
14 TraesCS4D01G322700 chr4B 91.525 118 3 5 13 130 616996851 616996741 6.700000e-34 156.0
15 TraesCS4D01G322700 chr6D 85.448 1072 152 4 2310 3379 23077157 23076088 0.000000e+00 1112.0
16 TraesCS4D01G322700 chr6D 87.719 114 13 1 1785 1898 73514667 73514555 1.130000e-26 132.0
17 TraesCS4D01G322700 chr6B 85.275 1073 154 4 2310 3380 37252583 37251513 0.000000e+00 1103.0
18 TraesCS4D01G322700 chr6A 83.117 693 105 7 2694 3380 22022249 22022935 5.490000e-174 621.0
19 TraesCS4D01G322700 chr6A 87.436 390 46 3 2310 2697 22021649 22022037 3.550000e-121 446.0
20 TraesCS4D01G322700 chr6A 86.992 123 12 4 1785 1906 89963651 89963532 8.720000e-28 135.0
21 TraesCS4D01G322700 chr3D 84.247 146 10 4 1757 1901 609703543 609703410 4.060000e-26 130.0
22 TraesCS4D01G322700 chr7B 84.211 95 13 2 1119 1212 730150150 730150243 1.910000e-14 91.6
23 TraesCS4D01G322700 chr7A 81.982 111 14 5 1103 1212 724082763 724082868 6.890000e-14 89.8
24 TraesCS4D01G322700 chrUn 82.075 106 15 4 1110 1212 92716843 92716947 2.480000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G322700 chr4D 484656910 484661904 4994 True 9225.0 9225 100.000000 1 4995 1 chr4D.!!$R1 4994
1 TraesCS4D01G322700 chr5A 665464953 665471178 6225 True 707.5 2433 92.846125 19 4995 8 chr5A.!!$R1 4976
2 TraesCS4D01G322700 chr4B 616986334 616991322 4988 True 1045.0 2403 92.093250 589 4655 4 chr4B.!!$R2 4066
3 TraesCS4D01G322700 chr6D 23076088 23077157 1069 True 1112.0 1112 85.448000 2310 3379 1 chr6D.!!$R1 1069
4 TraesCS4D01G322700 chr6B 37251513 37252583 1070 True 1103.0 1103 85.275000 2310 3380 1 chr6B.!!$R1 1070
5 TraesCS4D01G322700 chr6A 22021649 22022935 1286 False 533.5 621 85.276500 2310 3380 2 chr6A.!!$F1 1070

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
542 571 0.106149 ACGAACCCTGCGTCTCTTTT 59.894 50.0 0.00 0.00 37.42 2.27 F
886 929 0.243636 GGCACGGGGACAAATCTTTG 59.756 55.0 1.19 1.19 43.62 2.77 F
1651 2072 0.033601 AACAGTCCACAAACCCAGCA 60.034 50.0 0.00 0.00 0.00 4.41 F
1652 2073 0.466189 ACAGTCCACAAACCCAGCAG 60.466 55.0 0.00 0.00 0.00 4.24 F
1810 2282 0.473501 ATTTCCCAAAGCAGCCCCAA 60.474 50.0 0.00 0.00 0.00 4.12 F
3486 5427 0.107214 TATGCTGTACCTTGGCTGCC 60.107 55.0 12.87 12.87 0.00 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1631 2052 0.385390 GCTGGGTTTGTGGACTGTTG 59.615 55.000 0.00 0.0 0.00 3.33 R
1934 2662 0.751643 AATTTGAATCCCCGGCGAGG 60.752 55.000 9.30 4.0 40.63 4.63 R
3467 5408 0.107214 GGCAGCCAAGGTACAGCATA 60.107 55.000 6.55 0.0 0.00 3.14 R
3468 5409 1.379044 GGCAGCCAAGGTACAGCAT 60.379 57.895 6.55 0.0 0.00 3.79 R
3732 5741 1.270785 TGAATCGCTCTTGCCTGAACA 60.271 47.619 0.00 0.0 35.36 3.18 R
4427 6893 1.686355 ATTTGCACGGTGACTCCAAA 58.314 45.000 13.29 12.5 35.57 3.28 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.036577 TGAGTCCCGTGTCGTGTC 58.963 61.111 0.00 0.00 0.00 3.67
100 101 7.168637 GTCGTCGGTGTACATACATATTGAATT 59.831 37.037 0.00 0.00 38.63 2.17
154 156 4.187694 CTGTCTTTCTGCCCTGATCTTAC 58.812 47.826 0.00 0.00 0.00 2.34
167 169 3.997021 CTGATCTTACCGCCCATGTATTC 59.003 47.826 0.00 0.00 0.00 1.75
182 211 5.394883 CCATGTATTCTTGCTGCCAGATTTT 60.395 40.000 4.11 0.00 0.00 1.82
199 228 6.544931 CCAGATTTTCTTGATTCCTATGCAGA 59.455 38.462 0.00 0.00 0.00 4.26
247 276 1.532007 TGTTCCGCGGAATGTTTACAC 59.468 47.619 40.39 26.64 36.45 2.90
253 282 1.729149 GCGGAATGTTTACACAGCAGC 60.729 52.381 0.00 0.00 35.94 5.25
256 285 3.667960 CGGAATGTTTACACAGCAGCTTC 60.668 47.826 0.00 0.00 35.94 3.86
258 287 1.225855 TGTTTACACAGCAGCTTCGG 58.774 50.000 0.00 0.00 0.00 4.30
261 290 1.795768 TTACACAGCAGCTTCGGAAG 58.204 50.000 13.39 13.39 0.00 3.46
266 295 0.532573 CAGCAGCTTCGGAAGAGGTA 59.467 55.000 21.45 0.00 43.69 3.08
267 296 1.066858 CAGCAGCTTCGGAAGAGGTAA 60.067 52.381 21.45 0.00 43.69 2.85
269 298 1.936547 GCAGCTTCGGAAGAGGTAATG 59.063 52.381 21.45 9.69 43.69 1.90
270 299 2.678190 GCAGCTTCGGAAGAGGTAATGT 60.678 50.000 21.45 0.00 43.69 2.71
271 300 3.430374 GCAGCTTCGGAAGAGGTAATGTA 60.430 47.826 21.45 0.00 43.69 2.29
272 301 4.113354 CAGCTTCGGAAGAGGTAATGTAC 58.887 47.826 21.45 0.00 43.69 2.90
281 310 6.459298 CGGAAGAGGTAATGTACGTAAGATGT 60.459 42.308 0.00 0.00 43.62 3.06
283 312 8.408601 GGAAGAGGTAATGTACGTAAGATGTTA 58.591 37.037 0.00 0.00 43.62 2.41
308 337 0.901124 AGCACCGAAGAGAGAAGCAT 59.099 50.000 0.00 0.00 0.00 3.79
309 338 1.134848 AGCACCGAAGAGAGAAGCATC 60.135 52.381 0.00 0.00 0.00 3.91
310 339 1.134848 GCACCGAAGAGAGAAGCATCT 60.135 52.381 0.00 0.00 39.10 2.90
311 340 2.538437 CACCGAAGAGAGAAGCATCTG 58.462 52.381 0.00 0.00 35.54 2.90
312 341 2.165234 CACCGAAGAGAGAAGCATCTGA 59.835 50.000 0.00 0.00 35.54 3.27
313 342 3.030291 ACCGAAGAGAGAAGCATCTGAT 58.970 45.455 0.00 0.00 35.54 2.90
314 343 4.037327 CACCGAAGAGAGAAGCATCTGATA 59.963 45.833 0.00 0.00 35.54 2.15
315 344 4.646945 ACCGAAGAGAGAAGCATCTGATAA 59.353 41.667 0.00 0.00 35.54 1.75
316 345 5.304101 ACCGAAGAGAGAAGCATCTGATAAT 59.696 40.000 0.00 0.00 35.54 1.28
317 346 6.491745 ACCGAAGAGAGAAGCATCTGATAATA 59.508 38.462 0.00 0.00 35.54 0.98
318 347 7.178274 ACCGAAGAGAGAAGCATCTGATAATAT 59.822 37.037 0.00 0.00 35.54 1.28
319 348 8.034215 CCGAAGAGAGAAGCATCTGATAATATT 58.966 37.037 0.00 0.00 35.54 1.28
320 349 8.862074 CGAAGAGAGAAGCATCTGATAATATTG 58.138 37.037 0.00 0.00 35.54 1.90
321 350 9.153721 GAAGAGAGAAGCATCTGATAATATTGG 57.846 37.037 0.00 0.00 35.54 3.16
322 351 8.433249 AGAGAGAAGCATCTGATAATATTGGA 57.567 34.615 0.00 0.00 35.54 3.53
323 352 8.878211 AGAGAGAAGCATCTGATAATATTGGAA 58.122 33.333 0.00 0.00 35.54 3.53
324 353 8.845413 AGAGAAGCATCTGATAATATTGGAAC 57.155 34.615 0.00 0.00 35.54 3.62
325 354 7.601886 AGAGAAGCATCTGATAATATTGGAACG 59.398 37.037 0.00 0.00 35.54 3.95
326 355 7.445121 AGAAGCATCTGATAATATTGGAACGA 58.555 34.615 0.00 0.00 33.59 3.85
327 356 8.099537 AGAAGCATCTGATAATATTGGAACGAT 58.900 33.333 0.00 0.00 33.59 3.73
328 357 9.371136 GAAGCATCTGATAATATTGGAACGATA 57.629 33.333 0.00 0.00 0.00 2.92
329 358 8.709386 AGCATCTGATAATATTGGAACGATAC 57.291 34.615 0.00 0.00 0.00 2.24
330 359 8.314021 AGCATCTGATAATATTGGAACGATACA 58.686 33.333 0.00 0.00 0.00 2.29
331 360 8.598924 GCATCTGATAATATTGGAACGATACAG 58.401 37.037 0.00 0.00 0.00 2.74
332 361 9.860898 CATCTGATAATATTGGAACGATACAGA 57.139 33.333 0.00 0.00 34.80 3.41
334 363 9.297037 TCTGATAATATTGGAACGATACAGAGA 57.703 33.333 0.00 0.00 0.00 3.10
335 364 9.914131 CTGATAATATTGGAACGATACAGAGAA 57.086 33.333 0.00 0.00 0.00 2.87
336 365 9.914131 TGATAATATTGGAACGATACAGAGAAG 57.086 33.333 0.00 0.00 0.00 2.85
342 371 8.649973 ATTGGAACGATACAGAGAAGATTAAC 57.350 34.615 0.00 0.00 0.00 2.01
343 372 7.165460 TGGAACGATACAGAGAAGATTAACA 57.835 36.000 0.00 0.00 0.00 2.41
344 373 7.782049 TGGAACGATACAGAGAAGATTAACAT 58.218 34.615 0.00 0.00 0.00 2.71
345 374 7.706607 TGGAACGATACAGAGAAGATTAACATG 59.293 37.037 0.00 0.00 0.00 3.21
346 375 7.169982 GGAACGATACAGAGAAGATTAACATGG 59.830 40.741 0.00 0.00 0.00 3.66
347 376 7.348080 ACGATACAGAGAAGATTAACATGGA 57.652 36.000 0.00 0.00 0.00 3.41
348 377 7.782049 ACGATACAGAGAAGATTAACATGGAA 58.218 34.615 0.00 0.00 0.00 3.53
349 378 7.923344 ACGATACAGAGAAGATTAACATGGAAG 59.077 37.037 0.00 0.00 0.00 3.46
350 379 7.383572 CGATACAGAGAAGATTAACATGGAAGG 59.616 40.741 0.00 0.00 0.00 3.46
351 380 6.627087 ACAGAGAAGATTAACATGGAAGGA 57.373 37.500 0.00 0.00 0.00 3.36
352 381 7.205515 ACAGAGAAGATTAACATGGAAGGAT 57.794 36.000 0.00 0.00 0.00 3.24
353 382 7.052873 ACAGAGAAGATTAACATGGAAGGATG 58.947 38.462 0.00 0.00 0.00 3.51
354 383 7.092712 ACAGAGAAGATTAACATGGAAGGATGA 60.093 37.037 0.00 0.00 0.00 2.92
355 384 7.226325 CAGAGAAGATTAACATGGAAGGATGAC 59.774 40.741 0.00 0.00 0.00 3.06
356 385 6.962182 AGAAGATTAACATGGAAGGATGACA 58.038 36.000 0.00 0.00 0.00 3.58
357 386 6.825721 AGAAGATTAACATGGAAGGATGACAC 59.174 38.462 0.00 0.00 0.00 3.67
358 387 5.118990 AGATTAACATGGAAGGATGACACG 58.881 41.667 0.00 0.00 0.00 4.49
359 388 1.453155 AACATGGAAGGATGACACGC 58.547 50.000 0.00 0.00 0.00 5.34
360 389 0.324614 ACATGGAAGGATGACACGCA 59.675 50.000 0.00 0.00 0.00 5.24
361 390 0.729116 CATGGAAGGATGACACGCAC 59.271 55.000 0.00 0.00 0.00 5.34
362 391 0.324614 ATGGAAGGATGACACGCACA 59.675 50.000 0.00 0.00 0.00 4.57
363 392 0.107643 TGGAAGGATGACACGCACAA 59.892 50.000 0.00 0.00 0.00 3.33
364 393 1.234821 GGAAGGATGACACGCACAAA 58.765 50.000 0.00 0.00 0.00 2.83
365 394 1.812571 GGAAGGATGACACGCACAAAT 59.187 47.619 0.00 0.00 0.00 2.32
366 395 2.228822 GGAAGGATGACACGCACAAATT 59.771 45.455 0.00 0.00 0.00 1.82
367 396 2.995466 AGGATGACACGCACAAATTG 57.005 45.000 0.00 0.00 0.00 2.32
368 397 2.503331 AGGATGACACGCACAAATTGA 58.497 42.857 0.00 0.00 0.00 2.57
392 421 2.981302 AGCGGCACATGCTCTGTA 59.019 55.556 1.45 0.00 38.62 2.74
393 422 1.448540 AGCGGCACATGCTCTGTAC 60.449 57.895 1.45 0.00 38.62 2.90
394 423 2.464459 GCGGCACATGCTCTGTACC 61.464 63.158 3.48 0.52 37.86 3.34
395 424 3.799753 GGCACATGCTCTGTACCG 58.200 61.111 3.48 0.00 41.70 4.02
396 425 1.218047 GGCACATGCTCTGTACCGA 59.782 57.895 3.48 0.00 41.70 4.69
397 426 0.391130 GGCACATGCTCTGTACCGAA 60.391 55.000 3.48 0.00 41.70 4.30
398 427 1.656652 GCACATGCTCTGTACCGAAT 58.343 50.000 0.00 0.00 35.91 3.34
399 428 1.594862 GCACATGCTCTGTACCGAATC 59.405 52.381 0.00 0.00 35.91 2.52
400 429 2.739932 GCACATGCTCTGTACCGAATCT 60.740 50.000 0.00 0.00 35.91 2.40
401 430 3.490933 GCACATGCTCTGTACCGAATCTA 60.491 47.826 0.00 0.00 35.91 1.98
402 431 4.045104 CACATGCTCTGTACCGAATCTAC 58.955 47.826 0.00 0.00 35.91 2.59
404 433 3.777465 TGCTCTGTACCGAATCTACAC 57.223 47.619 0.00 0.00 0.00 2.90
405 434 3.086282 TGCTCTGTACCGAATCTACACA 58.914 45.455 0.00 0.00 0.00 3.72
406 435 3.119602 TGCTCTGTACCGAATCTACACAC 60.120 47.826 0.00 0.00 0.00 3.82
407 436 3.681855 CTCTGTACCGAATCTACACACG 58.318 50.000 0.00 0.00 0.00 4.49
408 437 3.337358 TCTGTACCGAATCTACACACGA 58.663 45.455 0.00 0.00 0.00 4.35
409 438 3.125829 TCTGTACCGAATCTACACACGAC 59.874 47.826 0.00 0.00 0.00 4.34
410 439 3.076621 TGTACCGAATCTACACACGACT 58.923 45.455 0.00 0.00 0.00 4.18
412 441 1.201647 ACCGAATCTACACACGACTGG 59.798 52.381 0.00 0.00 0.00 4.00
413 442 1.269166 CGAATCTACACACGACTGGC 58.731 55.000 0.00 0.00 0.00 4.85
423 452 4.902308 CGACTGGCGTATGGAACA 57.098 55.556 0.00 0.00 37.91 3.18
424 453 2.369870 CGACTGGCGTATGGAACAC 58.630 57.895 0.00 0.00 36.59 3.32
425 454 1.082117 CGACTGGCGTATGGAACACC 61.082 60.000 0.00 0.00 36.59 4.16
450 479 1.435577 GTACAAGGCCCAACGTGTAG 58.564 55.000 0.00 0.00 36.31 2.74
452 481 1.599518 CAAGGCCCAACGTGTAGCA 60.600 57.895 0.00 0.00 0.00 3.49
454 483 0.676782 AAGGCCCAACGTGTAGCATC 60.677 55.000 0.00 0.00 0.00 3.91
464 493 1.447140 TGTAGCATCGCGGTTCACC 60.447 57.895 6.13 0.00 0.00 4.02
486 515 2.159430 TGACGCATGAGGTGAAAAATCG 59.841 45.455 0.00 0.00 0.00 3.34
490 519 3.725895 CGCATGAGGTGAAAAATCGTCAG 60.726 47.826 0.00 0.00 33.21 3.51
491 520 3.189287 GCATGAGGTGAAAAATCGTCAGT 59.811 43.478 0.00 0.00 33.21 3.41
493 522 5.065218 GCATGAGGTGAAAAATCGTCAGTAT 59.935 40.000 0.00 0.00 33.21 2.12
494 523 6.257849 GCATGAGGTGAAAAATCGTCAGTATA 59.742 38.462 0.00 0.00 33.21 1.47
498 527 8.141909 TGAGGTGAAAAATCGTCAGTATATAGG 58.858 37.037 0.00 0.00 0.00 2.57
501 530 8.358148 GGTGAAAAATCGTCAGTATATAGGAGA 58.642 37.037 0.00 0.00 0.00 3.71
515 544 8.866093 AGTATATAGGAGAAAAAGAAGAGAGGC 58.134 37.037 0.00 0.00 0.00 4.70
517 546 2.635427 AGGAGAAAAAGAAGAGAGGCGT 59.365 45.455 0.00 0.00 0.00 5.68
520 549 1.197949 GAAAAAGAAGAGAGGCGTGGC 59.802 52.381 0.00 0.00 0.00 5.01
521 550 0.398318 AAAAGAAGAGAGGCGTGGCT 59.602 50.000 0.00 0.00 0.00 4.75
524 553 0.533032 AGAAGAGAGGCGTGGCTAAC 59.467 55.000 0.00 0.00 0.00 2.34
534 563 2.047655 TGGCTAACGAACCCTGCG 60.048 61.111 0.00 0.00 0.00 5.18
536 565 2.098831 GGCTAACGAACCCTGCGTC 61.099 63.158 0.00 0.00 41.75 5.19
538 567 1.077089 GCTAACGAACCCTGCGTCTC 61.077 60.000 0.00 0.00 41.75 3.36
542 571 0.106149 ACGAACCCTGCGTCTCTTTT 59.894 50.000 0.00 0.00 37.42 2.27
672 704 2.489275 CCAAATTCGCATCCCCCGG 61.489 63.158 0.00 0.00 0.00 5.73
886 929 0.243636 GGCACGGGGACAAATCTTTG 59.756 55.000 1.19 1.19 43.62 2.77
951 995 0.382515 GCTCGCCTAGTCGTCATTCT 59.617 55.000 0.00 0.00 0.00 2.40
1025 1078 1.741770 CCTACAAGGTGCGTGCTCC 60.742 63.158 4.82 4.82 0.00 4.70
1035 1088 2.407210 CGTGCTCCGCTCTCTCTC 59.593 66.667 0.00 0.00 0.00 3.20
1037 1090 2.826287 TGCTCCGCTCTCTCTCCG 60.826 66.667 0.00 0.00 0.00 4.63
1038 1091 4.264638 GCTCCGCTCTCTCTCCGC 62.265 72.222 0.00 0.00 0.00 5.54
1039 1092 2.515991 CTCCGCTCTCTCTCCGCT 60.516 66.667 0.00 0.00 0.00 5.52
1040 1093 2.826287 TCCGCTCTCTCTCCGCTG 60.826 66.667 0.00 0.00 0.00 5.18
1042 1095 4.567385 CGCTCTCTCTCCGCTGCC 62.567 72.222 0.00 0.00 0.00 4.85
1079 1132 1.598130 GCTCGTGCTGGTTCTTGGT 60.598 57.895 1.41 0.00 36.03 3.67
1088 1141 2.935849 GCTGGTTCTTGGTTTTGGTTTG 59.064 45.455 0.00 0.00 0.00 2.93
1089 1142 3.530535 CTGGTTCTTGGTTTTGGTTTGG 58.469 45.455 0.00 0.00 0.00 3.28
1090 1143 2.907042 TGGTTCTTGGTTTTGGTTTGGT 59.093 40.909 0.00 0.00 0.00 3.67
1091 1144 3.328050 TGGTTCTTGGTTTTGGTTTGGTT 59.672 39.130 0.00 0.00 0.00 3.67
1092 1145 4.202472 TGGTTCTTGGTTTTGGTTTGGTTT 60.202 37.500 0.00 0.00 0.00 3.27
1103 1156 2.962421 TGGTTTGGTTTTGATGGGAGTC 59.038 45.455 0.00 0.00 0.00 3.36
1105 1158 3.641436 GGTTTGGTTTTGATGGGAGTCTT 59.359 43.478 0.00 0.00 0.00 3.01
1263 1323 1.903955 GCTCTCCTTCCCTTCCCTTCT 60.904 57.143 0.00 0.00 0.00 2.85
1268 1328 2.114506 TCCTTCCCTTCCCTTCTCTTCT 59.885 50.000 0.00 0.00 0.00 2.85
1269 1329 2.503765 CCTTCCCTTCCCTTCTCTTCTC 59.496 54.545 0.00 0.00 0.00 2.87
1270 1330 3.449918 CTTCCCTTCCCTTCTCTTCTCT 58.550 50.000 0.00 0.00 0.00 3.10
1273 1333 3.078305 TCCCTTCCCTTCTCTTCTCTTCT 59.922 47.826 0.00 0.00 0.00 2.85
1274 1334 3.843619 CCCTTCCCTTCTCTTCTCTTCTT 59.156 47.826 0.00 0.00 0.00 2.52
1275 1335 5.026790 CCCTTCCCTTCTCTTCTCTTCTTA 58.973 45.833 0.00 0.00 0.00 2.10
1281 1341 5.952947 CCCTTCTCTTCTCTTCTTACCACTA 59.047 44.000 0.00 0.00 0.00 2.74
1289 1349 2.232941 TCTTCTTACCACTACTTGCCGG 59.767 50.000 0.00 0.00 0.00 6.13
1291 1351 2.463752 TCTTACCACTACTTGCCGGAT 58.536 47.619 5.05 0.00 0.00 4.18
1311 1371 4.602259 CGGACGTGTGGTGTGGCT 62.602 66.667 0.00 0.00 0.00 4.75
1313 1373 3.649986 GACGTGTGGTGTGGCTGC 61.650 66.667 0.00 0.00 0.00 5.25
1315 1375 4.935495 CGTGTGGTGTGGCTGCCT 62.935 66.667 21.03 0.00 0.00 4.75
1316 1376 3.289834 GTGTGGTGTGGCTGCCTG 61.290 66.667 21.03 0.00 0.00 4.85
1317 1377 3.807839 TGTGGTGTGGCTGCCTGT 61.808 61.111 21.03 0.00 0.00 4.00
1318 1378 3.289834 GTGGTGTGGCTGCCTGTG 61.290 66.667 21.03 0.00 0.00 3.66
1319 1379 4.584518 TGGTGTGGCTGCCTGTGG 62.585 66.667 21.03 0.00 0.00 4.17
1321 1381 4.586235 GTGTGGCTGCCTGTGGGT 62.586 66.667 21.03 0.00 34.45 4.51
1322 1382 4.584518 TGTGGCTGCCTGTGGGTG 62.585 66.667 21.03 0.00 34.45 4.61
1323 1383 4.586235 GTGGCTGCCTGTGGGTGT 62.586 66.667 21.03 0.00 34.45 4.16
1324 1384 4.584518 TGGCTGCCTGTGGGTGTG 62.585 66.667 21.03 0.00 34.45 3.82
1334 1394 2.447572 TGGGTGTGGCCACTCTCA 60.448 61.111 31.72 31.72 42.93 3.27
1339 1399 2.262915 GTGGCCACTCTCACTCCG 59.737 66.667 29.12 0.00 0.00 4.63
1342 1402 2.179517 GCCACTCTCACTCCGTCG 59.820 66.667 0.00 0.00 0.00 5.12
1361 1421 4.666908 CGTCGGAGTCATATCATCACTACG 60.667 50.000 0.00 0.00 44.47 3.51
1362 1422 4.213694 GTCGGAGTCATATCATCACTACGT 59.786 45.833 3.04 0.00 43.69 3.57
1363 1423 5.407691 GTCGGAGTCATATCATCACTACGTA 59.592 44.000 3.04 0.00 43.69 3.57
1364 1424 6.092396 GTCGGAGTCATATCATCACTACGTAT 59.908 42.308 0.00 0.00 43.69 3.06
1365 1425 7.277319 GTCGGAGTCATATCATCACTACGTATA 59.723 40.741 0.00 0.00 43.69 1.47
1382 1442 9.046296 ACTACGTATATAGCAAGTAAAGTACGT 57.954 33.333 11.22 11.22 45.69 3.57
1432 1492 4.744136 AAATCGTCCGGAGTTTCTTTTC 57.256 40.909 3.06 0.00 25.90 2.29
1471 1531 2.172679 GGCCCCCGTTTTCAATTAAGA 58.827 47.619 0.00 0.00 0.00 2.10
1507 1569 7.706281 TTTTGTACAAAACATGTGGCAATAG 57.294 32.000 26.05 0.00 43.77 1.73
1522 1584 2.498167 CAATAGCAGCCATACACTCCC 58.502 52.381 0.00 0.00 0.00 4.30
1527 1589 0.911769 CAGCCATACACTCCCCAAGA 59.088 55.000 0.00 0.00 0.00 3.02
1528 1590 0.912486 AGCCATACACTCCCCAAGAC 59.088 55.000 0.00 0.00 0.00 3.01
1529 1591 0.618458 GCCATACACTCCCCAAGACA 59.382 55.000 0.00 0.00 0.00 3.41
1530 1592 1.212935 GCCATACACTCCCCAAGACAT 59.787 52.381 0.00 0.00 0.00 3.06
1562 1624 2.703007 GGCCTACATCAGATCAGAGGTT 59.297 50.000 10.76 0.00 34.06 3.50
1605 1667 3.052262 ACTTAACTAGGGGTAGGGGAGAC 60.052 52.174 0.00 0.00 0.00 3.36
1609 2030 2.321296 ACTAGGGGTAGGGGAGACATTT 59.679 50.000 0.00 0.00 0.00 2.32
1613 2034 3.014807 AGGGGTAGGGGAGACATTTTCTA 59.985 47.826 0.00 0.00 33.22 2.10
1617 2038 5.104067 GGGTAGGGGAGACATTTTCTACAAT 60.104 44.000 0.00 0.00 36.80 2.71
1641 2062 6.698380 TCCTCTTTTCTATACAACAGTCCAC 58.302 40.000 0.00 0.00 0.00 4.02
1642 2063 6.269077 TCCTCTTTTCTATACAACAGTCCACA 59.731 38.462 0.00 0.00 0.00 4.17
1646 2067 6.870971 TTTCTATACAACAGTCCACAAACC 57.129 37.500 0.00 0.00 0.00 3.27
1648 2069 3.586470 ATACAACAGTCCACAAACCCA 57.414 42.857 0.00 0.00 0.00 4.51
1649 2070 1.762708 ACAACAGTCCACAAACCCAG 58.237 50.000 0.00 0.00 0.00 4.45
1650 2071 0.385390 CAACAGTCCACAAACCCAGC 59.615 55.000 0.00 0.00 0.00 4.85
1651 2072 0.033601 AACAGTCCACAAACCCAGCA 60.034 50.000 0.00 0.00 0.00 4.41
1652 2073 0.466189 ACAGTCCACAAACCCAGCAG 60.466 55.000 0.00 0.00 0.00 4.24
1655 2081 0.890996 GTCCACAAACCCAGCAGGAG 60.891 60.000 0.00 0.00 39.89 3.69
1661 2087 1.815003 CAAACCCAGCAGGAGAACATC 59.185 52.381 0.00 0.00 39.89 3.06
1701 2128 6.194967 TCCTGAGATCATTAGGAAGTACACA 58.805 40.000 9.41 0.00 37.66 3.72
1721 2148 5.754890 ACACATTGAAAGCAAGATTTGTTCC 59.245 36.000 0.00 0.00 37.45 3.62
1724 2151 6.480981 ACATTGAAAGCAAGATTTGTTCCTTG 59.519 34.615 0.00 0.00 41.84 3.61
1732 2159 5.234972 GCAAGATTTGTTCCTTGTTTTCCAG 59.765 40.000 0.00 0.00 41.21 3.86
1735 2162 8.359642 CAAGATTTGTTCCTTGTTTTCCAGATA 58.640 33.333 0.00 0.00 36.08 1.98
1741 2169 5.576563 TCCTTGTTTTCCAGATAGTCCAA 57.423 39.130 0.00 0.00 0.00 3.53
1762 2190 2.200373 AAAGTCCAGCAACGCCTATT 57.800 45.000 0.00 0.00 0.00 1.73
1763 2191 1.739067 AAGTCCAGCAACGCCTATTC 58.261 50.000 0.00 0.00 0.00 1.75
1764 2192 0.905357 AGTCCAGCAACGCCTATTCT 59.095 50.000 0.00 0.00 0.00 2.40
1767 2195 1.009829 CCAGCAACGCCTATTCTGAC 58.990 55.000 0.00 0.00 0.00 3.51
1768 2196 1.675714 CCAGCAACGCCTATTCTGACA 60.676 52.381 0.00 0.00 0.00 3.58
1769 2197 2.283298 CAGCAACGCCTATTCTGACAT 58.717 47.619 0.00 0.00 0.00 3.06
1775 2247 5.007626 GCAACGCCTATTCTGACATTAATCA 59.992 40.000 0.00 0.00 0.00 2.57
1810 2282 0.473501 ATTTCCCAAAGCAGCCCCAA 60.474 50.000 0.00 0.00 0.00 4.12
1832 2304 7.040409 CCCAATAACATTCCATAAGAACCTAGC 60.040 40.741 0.00 0.00 37.29 3.42
1878 2350 5.585445 AGTGATCAATGCTCTCTTCATTGTC 59.415 40.000 13.32 11.05 46.50 3.18
1904 2538 8.971321 CACAAAATTCACATTTCCTACTTTCTG 58.029 33.333 0.00 0.00 30.80 3.02
1905 2539 8.695456 ACAAAATTCACATTTCCTACTTTCTGT 58.305 29.630 0.00 0.00 30.80 3.41
1910 2544 9.911788 ATTCACATTTCCTACTTTCTGTATCAT 57.088 29.630 0.00 0.00 0.00 2.45
1940 2668 2.474816 CTAAGTGATTAGTGCCTCGCC 58.525 52.381 0.00 0.00 0.00 5.54
1959 2687 2.722094 CCGGGGATTCAAATTGTCAGA 58.278 47.619 0.00 0.00 0.00 3.27
1979 2707 5.125739 TCAGAGCAAACTAAGCTAGACTACC 59.874 44.000 0.00 0.00 43.58 3.18
1983 2711 4.330347 GCAAACTAAGCTAGACTACCAAGC 59.670 45.833 0.00 0.00 36.48 4.01
1995 2723 2.431057 ACTACCAAGCCCGAGATTACAG 59.569 50.000 0.00 0.00 0.00 2.74
2009 2737 6.454318 CCGAGATTACAGAAAATGTTCAGACG 60.454 42.308 0.00 0.00 39.96 4.18
2018 2746 9.517609 ACAGAAAATGTTCAGACGATACTATAC 57.482 33.333 0.00 0.00 39.96 1.47
2027 3017 7.175073 TCAGACGATACTATACTGAAGTTCG 57.825 40.000 0.00 0.00 35.20 3.95
2028 3018 5.846994 CAGACGATACTATACTGAAGTTCGC 59.153 44.000 0.00 0.00 34.14 4.70
2030 3020 5.749620 ACGATACTATACTGAAGTTCGCAG 58.250 41.667 0.00 0.00 39.26 5.18
2036 3026 2.526304 ACTGAAGTTCGCAGTAAGCA 57.474 45.000 0.00 0.00 44.27 3.91
2039 3029 3.002348 ACTGAAGTTCGCAGTAAGCAAAC 59.998 43.478 0.00 0.00 44.27 2.93
2042 3032 4.812091 TGAAGTTCGCAGTAAGCAAACTTA 59.188 37.500 6.18 0.00 46.13 2.24
2048 3038 4.573201 TCGCAGTAAGCAAACTTAAAGTGT 59.427 37.500 0.00 0.00 46.13 3.55
2053 3043 7.274686 GCAGTAAGCAAACTTAAAGTGTTTTGA 59.725 33.333 0.00 0.00 44.79 2.69
2055 3045 8.520351 AGTAAGCAAACTTAAAGTGTTTTGAGT 58.480 29.630 0.00 0.00 42.81 3.41
2057 3047 7.812309 AGCAAACTTAAAGTGTTTTGAGTTC 57.188 32.000 9.61 1.50 46.34 3.01
2060 3050 9.349145 GCAAACTTAAAGTGTTTTGAGTTCTTA 57.651 29.630 9.61 0.00 46.34 2.10
2064 3054 8.464404 ACTTAAAGTGTTTTGAGTTCTTAACCC 58.536 33.333 0.00 0.00 39.32 4.11
2065 3055 5.847111 AAGTGTTTTGAGTTCTTAACCCC 57.153 39.130 0.00 0.00 0.00 4.95
2086 3076 4.383010 CCCCCAAAATGAAGTGATTTAGGC 60.383 45.833 0.00 0.00 0.00 3.93
2087 3077 4.467438 CCCCAAAATGAAGTGATTTAGGCT 59.533 41.667 0.00 0.00 0.00 4.58
2088 3078 5.046376 CCCCAAAATGAAGTGATTTAGGCTT 60.046 40.000 0.00 0.00 0.00 4.35
2089 3079 6.101997 CCCAAAATGAAGTGATTTAGGCTTC 58.898 40.000 0.00 0.00 39.09 3.86
2103 3396 1.482593 AGGCTTCAGTACGATTGGGAG 59.517 52.381 0.00 0.00 0.00 4.30
2113 3745 3.627395 ACGATTGGGAGCAACTGAATA 57.373 42.857 0.00 0.00 0.00 1.75
2146 3778 6.528072 GTGAAAGAAAGACACAAAGAACTTGG 59.472 38.462 0.00 0.00 39.56 3.61
2270 3996 3.057876 ACGACGCCTGCAAATTGATTTAA 60.058 39.130 0.00 0.00 0.00 1.52
2288 4014 7.408910 TGATTTAATGACGATGCTTGTATGTG 58.591 34.615 0.00 0.00 0.00 3.21
2301 4027 2.754472 TGTATGTGCTGTGACTGTGAC 58.246 47.619 0.00 0.00 0.00 3.67
3046 4987 1.080705 CGAGGACCGCTTCGACTTT 60.081 57.895 0.00 0.00 45.33 2.66
3424 5365 3.616721 CGCTACCCCATCCCCTCG 61.617 72.222 0.00 0.00 0.00 4.63
3471 5412 6.968250 AGAAGGTACTCGTACTGTTATATGC 58.032 40.000 7.12 0.00 38.49 3.14
3472 5413 6.771749 AGAAGGTACTCGTACTGTTATATGCT 59.228 38.462 7.12 0.00 38.49 3.79
3473 5414 6.315091 AGGTACTCGTACTGTTATATGCTG 57.685 41.667 7.12 0.00 36.36 4.41
3474 5415 5.826737 AGGTACTCGTACTGTTATATGCTGT 59.173 40.000 7.12 0.00 36.36 4.40
3475 5416 6.994496 AGGTACTCGTACTGTTATATGCTGTA 59.006 38.462 7.12 0.00 36.36 2.74
3476 5417 7.041508 AGGTACTCGTACTGTTATATGCTGTAC 60.042 40.741 7.12 13.92 37.68 2.90
3477 5418 6.069684 ACTCGTACTGTTATATGCTGTACC 57.930 41.667 16.17 6.38 37.72 3.34
3478 5419 5.826737 ACTCGTACTGTTATATGCTGTACCT 59.173 40.000 16.17 4.75 37.72 3.08
3479 5420 6.320672 ACTCGTACTGTTATATGCTGTACCTT 59.679 38.462 16.17 5.66 37.72 3.50
3480 5421 6.500910 TCGTACTGTTATATGCTGTACCTTG 58.499 40.000 16.17 8.51 37.72 3.61
3481 5422 5.690409 CGTACTGTTATATGCTGTACCTTGG 59.310 44.000 16.17 0.00 37.72 3.61
3486 5427 0.107214 TATGCTGTACCTTGGCTGCC 60.107 55.000 12.87 12.87 0.00 4.85
3491 5432 1.675641 GTACCTTGGCTGCCACCTG 60.676 63.158 23.30 14.87 30.78 4.00
3517 5458 7.055667 TGATCTGTTCTTCTCACAAGTTAGT 57.944 36.000 0.00 0.00 0.00 2.24
3623 5565 4.692475 ACCCGGCAAGGTGCGTAC 62.692 66.667 0.00 0.00 46.21 3.67
3641 5587 4.444720 GCGTACCAAGCTACTGTATCAATC 59.555 45.833 0.00 0.00 0.00 2.67
3722 5731 1.819928 ATGTGTGTGTGTGTGTGTGT 58.180 45.000 0.00 0.00 0.00 3.72
3723 5732 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
3724 5733 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
3725 5734 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
3726 5735 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
3727 5736 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
3728 5737 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
3729 5738 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
3730 5739 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
3731 5740 2.070028 GTGTGTGTGTGTGTGTGTGTA 58.930 47.619 0.00 0.00 0.00 2.90
3732 5741 2.675844 GTGTGTGTGTGTGTGTGTGTAT 59.324 45.455 0.00 0.00 0.00 2.29
4047 6119 0.319125 GCTTCCTCTTATCGGCGAGG 60.319 60.000 17.22 10.96 46.52 4.63
4124 6196 9.551734 TGAAAAGAGGACATACATATGATTCTG 57.448 33.333 10.38 3.67 37.15 3.02
4126 6198 6.676990 AGAGGACATACATATGATTCTGCA 57.323 37.500 10.38 0.00 37.15 4.41
4135 6207 6.106877 ACATATGATTCTGCAACACGTTAC 57.893 37.500 10.38 0.00 0.00 2.50
4149 6221 1.670971 CGTTACGCGCATTGTCGTCT 61.671 55.000 5.73 0.00 39.79 4.18
4153 6225 2.391821 GCGCATTGTCGTCTGTCG 59.608 61.111 0.30 0.00 41.41 4.35
4299 6371 4.159321 TCTTGTGTTTGTCCTTTGCAATGA 59.841 37.500 13.58 4.58 0.00 2.57
4400 6816 7.362662 AGTAAAGTTGCATGTTGTCTATGTTG 58.637 34.615 0.00 0.00 0.00 3.33
4427 6893 6.411376 TCATCAAACCTCGTGTTGGTTATAT 58.589 36.000 0.00 0.00 45.99 0.86
4438 6904 5.163794 CGTGTTGGTTATATTTGGAGTCACC 60.164 44.000 0.00 0.00 39.54 4.02
4440 6906 4.829872 TGGTTATATTTGGAGTCACCGT 57.170 40.909 0.00 0.00 42.61 4.83
4442 6908 3.311596 GGTTATATTTGGAGTCACCGTGC 59.688 47.826 0.00 0.00 42.61 5.34
4450 6916 3.006940 TGGAGTCACCGTGCAAATTATC 58.993 45.455 0.00 0.00 42.61 1.75
4871 7389 0.843309 TCAGTTCCAGTTCCAAGCCA 59.157 50.000 0.00 0.00 0.00 4.75
4879 7397 0.331616 AGTTCCAAGCCATGTACCCC 59.668 55.000 0.00 0.00 0.00 4.95
4889 7407 2.291605 GCCATGTACCCCTTTCTTTCCT 60.292 50.000 0.00 0.00 0.00 3.36
4904 7422 8.642432 CCTTTCTTTCCTTCCAAAAATCTACTT 58.358 33.333 0.00 0.00 0.00 2.24
4907 7425 8.319143 TCTTTCCTTCCAAAAATCTACTTACG 57.681 34.615 0.00 0.00 0.00 3.18
4970 7488 5.363939 AGCTCATTTATGTGGCTACTCTTC 58.636 41.667 0.64 0.00 36.69 2.87
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.900167 CGACACGACACGGGACTCA 61.900 63.158 0.00 0.00 32.98 3.41
1 2 2.126965 CGACACGACACGGGACTC 60.127 66.667 0.00 0.00 32.98 3.36
2 3 2.903855 ACGACACGACACGGGACT 60.904 61.111 0.00 0.00 32.98 3.85
4 5 3.185082 GACACGACACGACACGGGA 62.185 63.158 0.00 0.00 36.71 5.14
5 6 2.728383 GACACGACACGACACGGG 60.728 66.667 0.00 0.00 38.94 5.28
7 8 2.351548 ACGACACGACACGACACG 60.352 61.111 0.00 0.00 0.00 4.49
9 10 1.297819 GACACGACACGACACGACA 60.298 57.895 0.00 0.00 0.00 4.35
10 11 2.344969 CGACACGACACGACACGAC 61.345 63.158 0.00 0.00 0.00 4.34
11 12 2.052854 CGACACGACACGACACGA 60.053 61.111 0.00 0.00 0.00 4.35
12 13 2.351548 ACGACACGACACGACACG 60.352 61.111 0.00 0.00 0.00 4.49
13 14 2.290789 CCACGACACGACACGACAC 61.291 63.158 0.00 0.00 0.00 3.67
14 15 2.025013 CCACGACACGACACGACA 59.975 61.111 0.00 0.00 0.00 4.35
15 16 2.025156 ACCACGACACGACACGAC 59.975 61.111 0.00 0.00 0.00 4.34
16 17 2.025013 CACCACGACACGACACGA 59.975 61.111 0.00 0.00 0.00 4.35
17 18 3.028019 CCACCACGACACGACACG 61.028 66.667 0.00 0.00 0.00 4.49
100 101 5.931294 TGATGTACTTTTAAGACCACCACA 58.069 37.500 0.00 0.00 0.00 4.17
154 156 0.664761 CAGCAAGAATACATGGGCGG 59.335 55.000 0.00 0.00 0.00 6.13
167 169 3.928727 TCAAGAAAATCTGGCAGCAAG 57.071 42.857 10.34 0.00 0.00 4.01
182 211 3.776969 AGGTGTCTGCATAGGAATCAAGA 59.223 43.478 0.00 0.00 0.00 3.02
223 252 2.873133 AACATTCCGCGGAACAAAAA 57.127 40.000 40.84 20.54 36.91 1.94
224 253 2.873133 AAACATTCCGCGGAACAAAA 57.127 40.000 40.84 21.36 36.91 2.44
225 254 2.617308 TGTAAACATTCCGCGGAACAAA 59.383 40.909 40.84 21.79 36.91 2.83
226 255 2.031857 GTGTAAACATTCCGCGGAACAA 60.032 45.455 40.84 22.21 36.91 2.83
227 256 1.532007 GTGTAAACATTCCGCGGAACA 59.468 47.619 40.84 30.26 36.91 3.18
228 257 1.532007 TGTGTAAACATTCCGCGGAAC 59.468 47.619 40.84 28.02 36.91 3.62
229 258 1.801771 CTGTGTAAACATTCCGCGGAA 59.198 47.619 40.11 40.11 38.59 4.30
230 259 1.434555 CTGTGTAAACATTCCGCGGA 58.565 50.000 27.28 27.28 0.00 5.54
231 260 0.179200 GCTGTGTAAACATTCCGCGG 60.179 55.000 22.12 22.12 0.00 6.46
232 261 0.515127 TGCTGTGTAAACATTCCGCG 59.485 50.000 0.00 0.00 0.00 6.46
233 262 1.729149 GCTGCTGTGTAAACATTCCGC 60.729 52.381 0.00 0.00 0.00 5.54
234 263 1.806542 AGCTGCTGTGTAAACATTCCG 59.193 47.619 0.00 0.00 0.00 4.30
235 264 3.667960 CGAAGCTGCTGTGTAAACATTCC 60.668 47.826 1.35 0.00 0.00 3.01
236 265 3.482786 CGAAGCTGCTGTGTAAACATTC 58.517 45.455 1.35 0.00 0.00 2.67
241 270 2.143122 CTTCCGAAGCTGCTGTGTAAA 58.857 47.619 1.35 0.00 0.00 2.01
247 276 0.532573 TACCTCTTCCGAAGCTGCTG 59.467 55.000 1.35 0.00 0.00 4.41
253 282 4.367386 ACGTACATTACCTCTTCCGAAG 57.633 45.455 1.30 1.30 0.00 3.79
256 285 5.490139 TCTTACGTACATTACCTCTTCCG 57.510 43.478 0.00 0.00 0.00 4.30
258 287 9.962783 ATAACATCTTACGTACATTACCTCTTC 57.037 33.333 0.00 0.00 0.00 2.87
261 290 8.965172 CACATAACATCTTACGTACATTACCTC 58.035 37.037 0.00 0.00 0.00 3.85
266 295 7.547722 TGCTTCACATAACATCTTACGTACATT 59.452 33.333 0.00 0.00 0.00 2.71
267 296 7.010183 GTGCTTCACATAACATCTTACGTACAT 59.990 37.037 0.00 0.00 34.08 2.29
269 298 6.237755 GGTGCTTCACATAACATCTTACGTAC 60.238 42.308 0.00 0.00 35.86 3.67
270 299 5.808540 GGTGCTTCACATAACATCTTACGTA 59.191 40.000 0.00 0.00 35.86 3.57
271 300 4.630069 GGTGCTTCACATAACATCTTACGT 59.370 41.667 0.00 0.00 35.86 3.57
272 301 4.259810 CGGTGCTTCACATAACATCTTACG 60.260 45.833 0.00 0.00 35.86 3.18
281 310 3.509967 TCTCTCTTCGGTGCTTCACATAA 59.490 43.478 0.00 0.00 35.86 1.90
283 312 1.895798 TCTCTCTTCGGTGCTTCACAT 59.104 47.619 0.00 0.00 35.86 3.21
308 337 9.297037 TCTCTGTATCGTTCCAATATTATCAGA 57.703 33.333 0.00 0.00 0.00 3.27
309 338 9.914131 TTCTCTGTATCGTTCCAATATTATCAG 57.086 33.333 0.00 0.00 0.00 2.90
310 339 9.914131 CTTCTCTGTATCGTTCCAATATTATCA 57.086 33.333 0.00 0.00 0.00 2.15
316 345 9.745880 GTTAATCTTCTCTGTATCGTTCCAATA 57.254 33.333 0.00 0.00 0.00 1.90
317 346 8.258007 TGTTAATCTTCTCTGTATCGTTCCAAT 58.742 33.333 0.00 0.00 0.00 3.16
318 347 7.608153 TGTTAATCTTCTCTGTATCGTTCCAA 58.392 34.615 0.00 0.00 0.00 3.53
319 348 7.165460 TGTTAATCTTCTCTGTATCGTTCCA 57.835 36.000 0.00 0.00 0.00 3.53
320 349 7.169982 CCATGTTAATCTTCTCTGTATCGTTCC 59.830 40.741 0.00 0.00 0.00 3.62
321 350 7.921214 TCCATGTTAATCTTCTCTGTATCGTTC 59.079 37.037 0.00 0.00 0.00 3.95
322 351 7.782049 TCCATGTTAATCTTCTCTGTATCGTT 58.218 34.615 0.00 0.00 0.00 3.85
323 352 7.348080 TCCATGTTAATCTTCTCTGTATCGT 57.652 36.000 0.00 0.00 0.00 3.73
324 353 7.383572 CCTTCCATGTTAATCTTCTCTGTATCG 59.616 40.741 0.00 0.00 0.00 2.92
325 354 8.424918 TCCTTCCATGTTAATCTTCTCTGTATC 58.575 37.037 0.00 0.00 0.00 2.24
326 355 8.324191 TCCTTCCATGTTAATCTTCTCTGTAT 57.676 34.615 0.00 0.00 0.00 2.29
327 356 7.733773 TCCTTCCATGTTAATCTTCTCTGTA 57.266 36.000 0.00 0.00 0.00 2.74
328 357 6.627087 TCCTTCCATGTTAATCTTCTCTGT 57.373 37.500 0.00 0.00 0.00 3.41
329 358 7.226325 GTCATCCTTCCATGTTAATCTTCTCTG 59.774 40.741 0.00 0.00 0.00 3.35
330 359 7.092712 TGTCATCCTTCCATGTTAATCTTCTCT 60.093 37.037 0.00 0.00 0.00 3.10
331 360 7.011857 GTGTCATCCTTCCATGTTAATCTTCTC 59.988 40.741 0.00 0.00 0.00 2.87
332 361 6.825721 GTGTCATCCTTCCATGTTAATCTTCT 59.174 38.462 0.00 0.00 0.00 2.85
333 362 6.238211 CGTGTCATCCTTCCATGTTAATCTTC 60.238 42.308 0.00 0.00 0.00 2.87
334 363 5.586243 CGTGTCATCCTTCCATGTTAATCTT 59.414 40.000 0.00 0.00 0.00 2.40
335 364 5.118990 CGTGTCATCCTTCCATGTTAATCT 58.881 41.667 0.00 0.00 0.00 2.40
336 365 4.260784 GCGTGTCATCCTTCCATGTTAATC 60.261 45.833 0.00 0.00 0.00 1.75
337 366 3.627577 GCGTGTCATCCTTCCATGTTAAT 59.372 43.478 0.00 0.00 0.00 1.40
338 367 3.006940 GCGTGTCATCCTTCCATGTTAA 58.993 45.455 0.00 0.00 0.00 2.01
339 368 2.027653 TGCGTGTCATCCTTCCATGTTA 60.028 45.455 0.00 0.00 0.00 2.41
340 369 1.271325 TGCGTGTCATCCTTCCATGTT 60.271 47.619 0.00 0.00 0.00 2.71
341 370 0.324614 TGCGTGTCATCCTTCCATGT 59.675 50.000 0.00 0.00 0.00 3.21
342 371 0.729116 GTGCGTGTCATCCTTCCATG 59.271 55.000 0.00 0.00 0.00 3.66
343 372 0.324614 TGTGCGTGTCATCCTTCCAT 59.675 50.000 0.00 0.00 0.00 3.41
344 373 0.107643 TTGTGCGTGTCATCCTTCCA 59.892 50.000 0.00 0.00 0.00 3.53
345 374 1.234821 TTTGTGCGTGTCATCCTTCC 58.765 50.000 0.00 0.00 0.00 3.46
346 375 3.058293 TCAATTTGTGCGTGTCATCCTTC 60.058 43.478 0.00 0.00 0.00 3.46
347 376 2.884012 TCAATTTGTGCGTGTCATCCTT 59.116 40.909 0.00 0.00 0.00 3.36
348 377 2.485426 CTCAATTTGTGCGTGTCATCCT 59.515 45.455 0.00 0.00 0.00 3.24
349 378 2.483877 TCTCAATTTGTGCGTGTCATCC 59.516 45.455 0.00 0.00 0.00 3.51
350 379 3.811722 TCTCAATTTGTGCGTGTCATC 57.188 42.857 0.00 0.00 0.00 2.92
351 380 3.610114 GCTTCTCAATTTGTGCGTGTCAT 60.610 43.478 0.00 0.00 0.00 3.06
352 381 2.286950 GCTTCTCAATTTGTGCGTGTCA 60.287 45.455 0.00 0.00 0.00 3.58
353 382 2.310577 GCTTCTCAATTTGTGCGTGTC 58.689 47.619 0.00 0.00 0.00 3.67
354 383 1.334059 CGCTTCTCAATTTGTGCGTGT 60.334 47.619 14.96 0.00 38.81 4.49
355 384 1.069973 TCGCTTCTCAATTTGTGCGTG 60.070 47.619 19.06 9.78 43.23 5.34
356 385 1.195448 CTCGCTTCTCAATTTGTGCGT 59.805 47.619 19.06 0.00 43.23 5.24
357 386 1.874562 CTCGCTTCTCAATTTGTGCG 58.125 50.000 16.15 16.15 43.95 5.34
358 387 1.611043 GCTCGCTTCTCAATTTGTGC 58.389 50.000 0.00 0.00 0.00 4.57
359 388 1.464687 CCGCTCGCTTCTCAATTTGTG 60.465 52.381 0.00 0.00 0.00 3.33
360 389 0.798776 CCGCTCGCTTCTCAATTTGT 59.201 50.000 0.00 0.00 0.00 2.83
361 390 0.522076 GCCGCTCGCTTCTCAATTTG 60.522 55.000 0.00 0.00 0.00 2.32
362 391 0.955428 TGCCGCTCGCTTCTCAATTT 60.955 50.000 0.00 0.00 38.78 1.82
363 392 1.375908 TGCCGCTCGCTTCTCAATT 60.376 52.632 0.00 0.00 38.78 2.32
364 393 2.103042 GTGCCGCTCGCTTCTCAAT 61.103 57.895 0.00 0.00 38.78 2.57
365 394 2.738521 GTGCCGCTCGCTTCTCAA 60.739 61.111 0.00 0.00 38.78 3.02
366 395 3.300934 ATGTGCCGCTCGCTTCTCA 62.301 57.895 0.00 0.00 38.78 3.27
367 396 2.510238 ATGTGCCGCTCGCTTCTC 60.510 61.111 0.00 0.00 38.78 2.87
368 397 2.816958 CATGTGCCGCTCGCTTCT 60.817 61.111 0.00 0.00 38.78 2.85
384 413 3.086282 TGTGTAGATTCGGTACAGAGCA 58.914 45.455 0.00 0.00 31.00 4.26
391 420 2.421073 CCAGTCGTGTGTAGATTCGGTA 59.579 50.000 0.00 0.00 0.00 4.02
392 421 1.201647 CCAGTCGTGTGTAGATTCGGT 59.798 52.381 0.00 0.00 0.00 4.69
393 422 1.909376 CCAGTCGTGTGTAGATTCGG 58.091 55.000 0.00 0.00 0.00 4.30
394 423 1.269166 GCCAGTCGTGTGTAGATTCG 58.731 55.000 0.00 0.00 0.00 3.34
395 424 1.269166 CGCCAGTCGTGTGTAGATTC 58.731 55.000 0.00 0.00 0.00 2.52
396 425 3.418675 CGCCAGTCGTGTGTAGATT 57.581 52.632 0.00 0.00 0.00 2.40
406 435 2.369870 GTGTTCCATACGCCAGTCG 58.630 57.895 0.00 0.00 45.38 4.18
412 441 2.162754 CGACCGGTGTTCCATACGC 61.163 63.158 14.63 0.00 36.50 4.42
413 442 1.517694 CCGACCGGTGTTCCATACG 60.518 63.158 14.63 6.43 0.00 3.06
414 443 4.507879 CCGACCGGTGTTCCATAC 57.492 61.111 14.63 0.00 0.00 2.39
424 453 4.462280 GGGCCTTGTACCGACCGG 62.462 72.222 0.84 6.94 42.03 5.28
425 454 3.242897 TTGGGCCTTGTACCGACCG 62.243 63.158 4.53 0.00 0.00 4.79
426 455 1.673337 GTTGGGCCTTGTACCGACC 60.673 63.158 4.53 0.00 35.50 4.79
427 456 2.030958 CGTTGGGCCTTGTACCGAC 61.031 63.158 4.53 0.00 37.72 4.79
428 457 2.344500 CGTTGGGCCTTGTACCGA 59.656 61.111 4.53 0.00 0.00 4.69
429 458 2.031465 ACGTTGGGCCTTGTACCG 59.969 61.111 4.53 0.00 0.00 4.02
430 459 0.035176 TACACGTTGGGCCTTGTACC 59.965 55.000 4.53 0.00 0.00 3.34
431 460 1.435577 CTACACGTTGGGCCTTGTAC 58.564 55.000 4.53 0.00 0.00 2.90
432 461 0.320946 GCTACACGTTGGGCCTTGTA 60.321 55.000 4.53 6.41 0.00 2.41
433 462 1.599797 GCTACACGTTGGGCCTTGT 60.600 57.895 4.53 5.50 0.00 3.16
437 466 2.461110 CGATGCTACACGTTGGGCC 61.461 63.158 0.00 0.00 0.00 5.80
450 479 2.434185 TCAGGTGAACCGCGATGC 60.434 61.111 8.23 0.00 42.08 3.91
452 481 2.126071 CGTCAGGTGAACCGCGAT 60.126 61.111 8.23 0.00 42.08 4.58
464 493 3.725895 CGATTTTTCACCTCATGCGTCAG 60.726 47.826 0.00 0.00 0.00 3.51
490 519 7.810759 CGCCTCTCTTCTTTTTCTCCTATATAC 59.189 40.741 0.00 0.00 0.00 1.47
491 520 7.506261 ACGCCTCTCTTCTTTTTCTCCTATATA 59.494 37.037 0.00 0.00 0.00 0.86
493 522 5.657302 ACGCCTCTCTTCTTTTTCTCCTATA 59.343 40.000 0.00 0.00 0.00 1.31
494 523 4.468153 ACGCCTCTCTTCTTTTTCTCCTAT 59.532 41.667 0.00 0.00 0.00 2.57
498 527 2.739379 CCACGCCTCTCTTCTTTTTCTC 59.261 50.000 0.00 0.00 0.00 2.87
501 530 1.202818 AGCCACGCCTCTCTTCTTTTT 60.203 47.619 0.00 0.00 0.00 1.94
503 532 1.267121 TAGCCACGCCTCTCTTCTTT 58.733 50.000 0.00 0.00 0.00 2.52
504 533 1.066787 GTTAGCCACGCCTCTCTTCTT 60.067 52.381 0.00 0.00 0.00 2.52
520 549 0.526662 AGAGACGCAGGGTTCGTTAG 59.473 55.000 0.00 0.00 40.59 2.34
521 550 0.963962 AAGAGACGCAGGGTTCGTTA 59.036 50.000 0.00 0.00 40.59 3.18
524 553 1.226746 AAAAAGAGACGCAGGGTTCG 58.773 50.000 0.00 0.00 0.00 3.95
548 577 1.639298 CTTGCACGGAAGGCACTAGC 61.639 60.000 0.00 0.00 41.75 3.42
578 609 1.134818 CCTTACCTATCGTGCAGTGCA 60.135 52.381 15.37 15.37 35.60 4.57
579 610 1.571919 CCTTACCTATCGTGCAGTGC 58.428 55.000 8.58 8.58 0.00 4.40
580 611 1.571919 GCCTTACCTATCGTGCAGTG 58.428 55.000 0.00 0.00 0.00 3.66
581 612 0.102481 CGCCTTACCTATCGTGCAGT 59.898 55.000 0.00 0.00 0.00 4.40
582 613 0.102481 ACGCCTTACCTATCGTGCAG 59.898 55.000 0.00 0.00 33.59 4.41
583 614 0.101759 GACGCCTTACCTATCGTGCA 59.898 55.000 0.00 0.00 35.12 4.57
584 615 0.384669 AGACGCCTTACCTATCGTGC 59.615 55.000 0.00 0.00 35.12 5.34
585 616 1.948145 AGAGACGCCTTACCTATCGTG 59.052 52.381 0.00 0.00 35.12 4.35
586 617 2.345124 AGAGACGCCTTACCTATCGT 57.655 50.000 0.00 0.00 37.92 3.73
587 618 2.030981 GGAAGAGACGCCTTACCTATCG 60.031 54.545 0.00 0.00 0.00 2.92
588 619 2.030981 CGGAAGAGACGCCTTACCTATC 60.031 54.545 0.00 0.00 0.00 2.08
589 620 1.955080 CGGAAGAGACGCCTTACCTAT 59.045 52.381 0.00 0.00 0.00 2.57
590 621 1.386533 CGGAAGAGACGCCTTACCTA 58.613 55.000 0.00 0.00 0.00 3.08
591 622 2.190756 CGGAAGAGACGCCTTACCT 58.809 57.895 0.00 0.00 0.00 3.08
592 623 4.808649 CGGAAGAGACGCCTTACC 57.191 61.111 0.00 0.00 0.00 2.85
672 704 2.203294 AACTGGGTGTGAACGGGC 60.203 61.111 0.00 0.00 0.00 6.13
736 768 0.393267 TCCCCGGCCAGAATAAAACG 60.393 55.000 2.24 0.00 0.00 3.60
825 857 2.506438 GGGCGTACGTGTGCTCTC 60.506 66.667 17.90 0.00 0.00 3.20
983 1027 2.642254 ATGGCGAACGGAGGAACGA 61.642 57.895 0.00 0.00 37.61 3.85
1025 1078 4.567385 GGCAGCGGAGAGAGAGCG 62.567 72.222 0.00 0.00 35.78 5.03
1079 1132 4.226168 ACTCCCATCAAAACCAAACCAAAA 59.774 37.500 0.00 0.00 0.00 2.44
1088 1141 2.029918 GCACAAGACTCCCATCAAAACC 60.030 50.000 0.00 0.00 0.00 3.27
1089 1142 2.887152 AGCACAAGACTCCCATCAAAAC 59.113 45.455 0.00 0.00 0.00 2.43
1090 1143 3.228188 AGCACAAGACTCCCATCAAAA 57.772 42.857 0.00 0.00 0.00 2.44
1091 1144 2.886523 CAAGCACAAGACTCCCATCAAA 59.113 45.455 0.00 0.00 0.00 2.69
1092 1145 2.158623 ACAAGCACAAGACTCCCATCAA 60.159 45.455 0.00 0.00 0.00 2.57
1103 1156 0.248743 CTGCACCACACAAGCACAAG 60.249 55.000 0.00 0.00 34.13 3.16
1105 1158 0.107459 TACTGCACCACACAAGCACA 60.107 50.000 0.00 0.00 34.13 4.57
1231 1291 0.757188 AGGAGAGCGGATGGTGTAGG 60.757 60.000 0.00 0.00 0.00 3.18
1232 1292 1.067821 GAAGGAGAGCGGATGGTGTAG 59.932 57.143 0.00 0.00 0.00 2.74
1263 1323 5.047235 GGCAAGTAGTGGTAAGAAGAGAAGA 60.047 44.000 0.00 0.00 0.00 2.87
1268 1328 2.232941 CCGGCAAGTAGTGGTAAGAAGA 59.767 50.000 0.00 0.00 0.00 2.87
1269 1329 2.232941 TCCGGCAAGTAGTGGTAAGAAG 59.767 50.000 0.00 0.00 0.00 2.85
1270 1330 2.250031 TCCGGCAAGTAGTGGTAAGAA 58.750 47.619 0.00 0.00 0.00 2.52
1273 1333 2.093869 GTGATCCGGCAAGTAGTGGTAA 60.094 50.000 0.00 0.00 0.00 2.85
1274 1334 1.479323 GTGATCCGGCAAGTAGTGGTA 59.521 52.381 0.00 0.00 0.00 3.25
1275 1335 0.249398 GTGATCCGGCAAGTAGTGGT 59.751 55.000 0.00 0.00 0.00 4.16
1321 1381 2.574018 CGGAGTGAGAGTGGCCACA 61.574 63.158 36.39 14.54 35.84 4.17
1322 1382 2.262915 CGGAGTGAGAGTGGCCAC 59.737 66.667 29.22 29.22 0.00 5.01
1323 1383 2.203640 ACGGAGTGAGAGTGGCCA 60.204 61.111 0.00 0.00 42.51 5.36
1339 1399 4.213694 ACGTAGTGATGATATGACTCCGAC 59.786 45.833 1.11 0.00 42.51 4.79
1361 1421 7.269297 GGCGTACGTACTTTACTTGCTATATAC 59.731 40.741 22.55 0.91 0.00 1.47
1362 1422 7.298122 GGCGTACGTACTTTACTTGCTATATA 58.702 38.462 22.55 0.00 0.00 0.86
1363 1423 6.145535 GGCGTACGTACTTTACTTGCTATAT 58.854 40.000 22.55 0.00 0.00 0.86
1364 1424 5.510671 GGCGTACGTACTTTACTTGCTATA 58.489 41.667 22.55 0.00 0.00 1.31
1365 1425 4.354587 GGCGTACGTACTTTACTTGCTAT 58.645 43.478 22.55 0.00 0.00 2.97
1382 1442 5.868801 AGTAACAAATTAAAGCTACGGCGTA 59.131 36.000 19.80 19.80 44.37 4.42
1432 1492 1.042229 CTGGAGGCTCCTCTGATGAG 58.958 60.000 32.28 16.71 42.38 2.90
1487 1547 4.804108 TGCTATTGCCACATGTTTTGTAC 58.196 39.130 0.00 0.00 35.94 2.90
1490 1550 2.669434 GCTGCTATTGCCACATGTTTTG 59.331 45.455 0.00 0.00 38.71 2.44
1491 1551 2.963432 GCTGCTATTGCCACATGTTTT 58.037 42.857 0.00 0.00 38.71 2.43
1507 1569 0.749454 CTTGGGGAGTGTATGGCTGC 60.749 60.000 0.00 0.00 0.00 5.25
1522 1584 3.067106 GCCGGATGTATGTATGTCTTGG 58.933 50.000 5.05 0.00 0.00 3.61
1527 1589 3.236047 TGTAGGCCGGATGTATGTATGT 58.764 45.455 5.05 0.00 0.00 2.29
1528 1590 3.953712 TGTAGGCCGGATGTATGTATG 57.046 47.619 5.05 0.00 0.00 2.39
1529 1591 4.093743 TGATGTAGGCCGGATGTATGTAT 58.906 43.478 5.05 0.00 0.00 2.29
1530 1592 3.502356 TGATGTAGGCCGGATGTATGTA 58.498 45.455 5.05 0.00 0.00 2.29
1613 2034 7.824779 GGACTGTTGTATAGAAAAGAGGATTGT 59.175 37.037 6.80 0.00 0.00 2.71
1617 2038 6.269077 TGTGGACTGTTGTATAGAAAAGAGGA 59.731 38.462 6.80 0.00 0.00 3.71
1631 2052 0.385390 GCTGGGTTTGTGGACTGTTG 59.615 55.000 0.00 0.00 0.00 3.33
1636 2057 0.890996 CTCCTGCTGGGTTTGTGGAC 60.891 60.000 10.07 0.00 36.25 4.02
1641 2062 1.815003 GATGTTCTCCTGCTGGGTTTG 59.185 52.381 10.07 0.00 36.25 2.93
1642 2063 1.425066 TGATGTTCTCCTGCTGGGTTT 59.575 47.619 10.07 0.00 36.25 3.27
1646 2067 2.775911 TCTTGATGTTCTCCTGCTGG 57.224 50.000 2.58 2.58 0.00 4.85
1648 2069 8.897752 GTTATATTTTCTTGATGTTCTCCTGCT 58.102 33.333 0.00 0.00 0.00 4.24
1649 2070 8.677300 TGTTATATTTTCTTGATGTTCTCCTGC 58.323 33.333 0.00 0.00 0.00 4.85
1676 2102 6.667848 TGTGTACTTCCTAATGATCTCAGGAA 59.332 38.462 17.08 17.08 44.32 3.36
1679 2105 8.200120 TCAATGTGTACTTCCTAATGATCTCAG 58.800 37.037 0.00 0.00 0.00 3.35
1681 2107 8.948631 TTCAATGTGTACTTCCTAATGATCTC 57.051 34.615 0.00 0.00 0.00 2.75
1692 2118 7.649306 ACAAATCTTGCTTTCAATGTGTACTTC 59.351 33.333 0.00 0.00 0.00 3.01
1695 2121 7.096065 GGAACAAATCTTGCTTTCAATGTGTAC 60.096 37.037 0.00 0.00 0.00 2.90
1698 2124 5.987347 AGGAACAAATCTTGCTTTCAATGTG 59.013 36.000 0.00 0.00 0.00 3.21
1701 2128 6.585416 ACAAGGAACAAATCTTGCTTTCAAT 58.415 32.000 0.00 0.00 42.82 2.57
1741 2169 1.975660 TAGGCGTTGCTGGACTTTTT 58.024 45.000 0.00 0.00 0.00 1.94
1810 2282 9.160412 ACTAGCTAGGTTCTTATGGAATGTTAT 57.840 33.333 24.35 0.00 36.24 1.89
1849 2321 9.842775 AATGAAGAGAGCATTGATCACTTATTA 57.157 29.630 13.37 5.47 34.85 0.98
1878 2350 8.971321 CAGAAAGTAGGAAATGTGAATTTTGTG 58.029 33.333 0.00 0.00 0.00 3.33
1910 2544 9.381038 AGGCACTAATCACTTAGGAATTCTATA 57.619 33.333 5.23 0.00 38.97 1.31
1911 2545 8.268878 AGGCACTAATCACTTAGGAATTCTAT 57.731 34.615 5.23 0.00 38.97 1.98
1912 2546 7.470147 CGAGGCACTAATCACTTAGGAATTCTA 60.470 40.741 5.23 0.00 41.55 2.10
1914 2548 5.463724 CGAGGCACTAATCACTTAGGAATTC 59.536 44.000 0.00 0.00 41.55 2.17
1915 2549 5.360591 CGAGGCACTAATCACTTAGGAATT 58.639 41.667 0.00 0.00 41.55 2.17
1916 2550 4.740934 GCGAGGCACTAATCACTTAGGAAT 60.741 45.833 0.00 0.00 41.55 3.01
1917 2551 3.430374 GCGAGGCACTAATCACTTAGGAA 60.430 47.826 0.00 0.00 41.55 3.36
1934 2662 0.751643 AATTTGAATCCCCGGCGAGG 60.752 55.000 9.30 4.00 40.63 4.63
1940 2668 2.098117 GCTCTGACAATTTGAATCCCCG 59.902 50.000 2.79 0.00 0.00 5.73
1959 2687 5.725362 CTTGGTAGTCTAGCTTAGTTTGCT 58.275 41.667 10.31 0.00 43.79 3.91
1979 2707 4.396166 ACATTTTCTGTAATCTCGGGCTTG 59.604 41.667 0.00 0.00 35.91 4.01
1983 2711 5.874810 TCTGAACATTTTCTGTAATCTCGGG 59.125 40.000 0.00 0.00 36.98 5.14
1995 2723 9.731819 TCAGTATAGTATCGTCTGAACATTTTC 57.268 33.333 8.96 0.00 33.18 2.29
2009 2737 7.324135 GCTTACTGCGAACTTCAGTATAGTATC 59.676 40.741 4.02 0.00 43.90 2.24
2018 2746 3.878086 TTTGCTTACTGCGAACTTCAG 57.122 42.857 0.00 0.00 46.63 3.02
2027 3017 7.274686 TCAAAACACTTTAAGTTTGCTTACTGC 59.725 33.333 0.00 0.00 39.02 4.40
2028 3018 8.682128 TCAAAACACTTTAAGTTTGCTTACTG 57.318 30.769 0.00 0.00 39.02 2.74
2030 3020 8.683550 ACTCAAAACACTTTAAGTTTGCTTAC 57.316 30.769 0.00 0.00 39.02 2.34
2031 3021 9.349145 GAACTCAAAACACTTTAAGTTTGCTTA 57.651 29.630 0.00 0.00 39.02 3.09
2039 3029 7.919091 GGGGTTAAGAACTCAAAACACTTTAAG 59.081 37.037 0.00 0.00 31.91 1.85
2042 3032 5.128171 GGGGGTTAAGAACTCAAAACACTTT 59.872 40.000 0.00 0.00 31.91 2.66
2064 3054 4.467438 AGCCTAAATCACTTCATTTTGGGG 59.533 41.667 8.01 0.00 38.42 4.96
2065 3055 5.665916 AGCCTAAATCACTTCATTTTGGG 57.334 39.130 8.01 0.00 38.42 4.12
2067 3057 7.373493 ACTGAAGCCTAAATCACTTCATTTTG 58.627 34.615 5.24 0.00 46.28 2.44
2073 3063 5.408356 TCGTACTGAAGCCTAAATCACTTC 58.592 41.667 0.00 0.00 40.17 3.01
2075 3065 5.599999 ATCGTACTGAAGCCTAAATCACT 57.400 39.130 0.00 0.00 0.00 3.41
2076 3066 5.006746 CCAATCGTACTGAAGCCTAAATCAC 59.993 44.000 0.00 0.00 0.00 3.06
2078 3068 4.511826 CCCAATCGTACTGAAGCCTAAATC 59.488 45.833 0.00 0.00 0.00 2.17
2079 3069 4.163458 TCCCAATCGTACTGAAGCCTAAAT 59.837 41.667 0.00 0.00 0.00 1.40
2080 3070 3.516300 TCCCAATCGTACTGAAGCCTAAA 59.484 43.478 0.00 0.00 0.00 1.85
2081 3071 3.101437 TCCCAATCGTACTGAAGCCTAA 58.899 45.455 0.00 0.00 0.00 2.69
2082 3072 2.693591 CTCCCAATCGTACTGAAGCCTA 59.306 50.000 0.00 0.00 0.00 3.93
2083 3073 1.482593 CTCCCAATCGTACTGAAGCCT 59.517 52.381 0.00 0.00 0.00 4.58
2084 3074 1.941325 CTCCCAATCGTACTGAAGCC 58.059 55.000 0.00 0.00 0.00 4.35
2086 3076 2.672961 TGCTCCCAATCGTACTGAAG 57.327 50.000 0.00 0.00 0.00 3.02
2087 3077 2.301870 AGTTGCTCCCAATCGTACTGAA 59.698 45.455 0.00 0.00 32.75 3.02
2088 3078 1.899814 AGTTGCTCCCAATCGTACTGA 59.100 47.619 0.00 0.00 32.75 3.41
2089 3079 2.002586 CAGTTGCTCCCAATCGTACTG 58.997 52.381 0.00 0.00 32.75 2.74
2090 3080 1.899814 TCAGTTGCTCCCAATCGTACT 59.100 47.619 0.00 0.00 32.75 2.73
2091 3081 2.380084 TCAGTTGCTCCCAATCGTAC 57.620 50.000 0.00 0.00 32.75 3.67
2094 3387 5.066375 TGAATTATTCAGTTGCTCCCAATCG 59.934 40.000 3.20 0.00 34.08 3.34
2103 3396 7.315142 TCTTTCACCATGAATTATTCAGTTGC 58.685 34.615 13.29 0.00 43.98 4.17
2113 3745 6.713762 TGTGTCTTTCTTTCACCATGAATT 57.286 33.333 0.00 0.00 36.11 2.17
2270 3996 2.610833 CAGCACATACAAGCATCGTCAT 59.389 45.455 0.00 0.00 0.00 3.06
2288 4014 1.202580 ACCTGAAGTCACAGTCACAGC 60.203 52.381 0.00 0.00 36.30 4.40
3046 4987 3.986006 GTCACGTCCAGCGGGTCA 61.986 66.667 1.81 0.00 45.75 4.02
3458 5399 5.465724 GCCAAGGTACAGCATATAACAGTAC 59.534 44.000 0.00 0.00 35.51 2.73
3459 5400 5.365605 AGCCAAGGTACAGCATATAACAGTA 59.634 40.000 0.00 0.00 0.00 2.74
3460 5401 4.164221 AGCCAAGGTACAGCATATAACAGT 59.836 41.667 0.00 0.00 0.00 3.55
3461 5402 4.512944 CAGCCAAGGTACAGCATATAACAG 59.487 45.833 0.00 0.00 0.00 3.16
3463 5404 3.251004 GCAGCCAAGGTACAGCATATAAC 59.749 47.826 0.00 0.00 0.00 1.89
3464 5405 3.476552 GCAGCCAAGGTACAGCATATAA 58.523 45.455 0.00 0.00 0.00 0.98
3465 5406 2.224523 GGCAGCCAAGGTACAGCATATA 60.225 50.000 6.55 0.00 0.00 0.86
3466 5407 1.477558 GGCAGCCAAGGTACAGCATAT 60.478 52.381 6.55 0.00 0.00 1.78
3467 5408 0.107214 GGCAGCCAAGGTACAGCATA 60.107 55.000 6.55 0.00 0.00 3.14
3468 5409 1.379044 GGCAGCCAAGGTACAGCAT 60.379 57.895 6.55 0.00 0.00 3.79
3470 5411 2.034066 TGGCAGCCAAGGTACAGC 59.966 61.111 13.33 0.00 0.00 4.40
3471 5412 1.675641 GGTGGCAGCCAAGGTACAG 60.676 63.158 18.28 0.00 34.18 2.74
3472 5413 2.153401 AGGTGGCAGCCAAGGTACA 61.153 57.895 18.28 0.00 34.18 2.90
3473 5414 1.675641 CAGGTGGCAGCCAAGGTAC 60.676 63.158 18.28 2.47 34.18 3.34
3474 5415 2.756400 CAGGTGGCAGCCAAGGTA 59.244 61.111 18.28 0.00 34.18 3.08
3475 5416 4.982701 GCAGGTGGCAGCCAAGGT 62.983 66.667 18.28 0.00 43.97 3.50
3486 5427 3.260740 GAGAAGAACAGATCAGCAGGTG 58.739 50.000 0.00 0.00 0.00 4.00
3491 5432 4.314121 ACTTGTGAGAAGAACAGATCAGC 58.686 43.478 0.00 0.00 0.00 4.26
3540 5482 3.103447 TCTCGATCACCATCTGCATTC 57.897 47.619 0.00 0.00 0.00 2.67
3542 5484 2.224233 CCTTCTCGATCACCATCTGCAT 60.224 50.000 0.00 0.00 0.00 3.96
3545 5487 2.954989 TCTCCTTCTCGATCACCATCTG 59.045 50.000 0.00 0.00 0.00 2.90
3623 5565 4.445453 TGCTGATTGATACAGTAGCTTGG 58.555 43.478 0.00 0.00 37.64 3.61
3624 5566 5.503683 GCTTGCTGATTGATACAGTAGCTTG 60.504 44.000 0.00 0.00 39.51 4.01
3641 5587 6.148270 CAAGTTCATAACAATTGCTTGCTG 57.852 37.500 5.05 2.99 35.69 4.41
3722 5731 2.629336 TGCCTGAACATACACACACA 57.371 45.000 0.00 0.00 0.00 3.72
3723 5732 3.138304 TCTTGCCTGAACATACACACAC 58.862 45.455 0.00 0.00 0.00 3.82
3724 5733 3.402110 CTCTTGCCTGAACATACACACA 58.598 45.455 0.00 0.00 0.00 3.72
3725 5734 2.160417 GCTCTTGCCTGAACATACACAC 59.840 50.000 0.00 0.00 0.00 3.82
3726 5735 2.426522 GCTCTTGCCTGAACATACACA 58.573 47.619 0.00 0.00 0.00 3.72
3727 5736 1.394917 CGCTCTTGCCTGAACATACAC 59.605 52.381 0.00 0.00 35.36 2.90
3728 5737 1.275010 TCGCTCTTGCCTGAACATACA 59.725 47.619 0.00 0.00 35.36 2.29
3729 5738 2.010145 TCGCTCTTGCCTGAACATAC 57.990 50.000 0.00 0.00 35.36 2.39
3730 5739 2.988010 ATCGCTCTTGCCTGAACATA 57.012 45.000 0.00 0.00 35.36 2.29
3731 5740 2.012673 GAATCGCTCTTGCCTGAACAT 58.987 47.619 0.00 0.00 35.36 2.71
3732 5741 1.270785 TGAATCGCTCTTGCCTGAACA 60.271 47.619 0.00 0.00 35.36 3.18
3920 5970 4.457496 AGCCTGCACGATCCCACG 62.457 66.667 0.00 0.00 39.31 4.94
4047 6119 4.273480 AGATGCAGCATTTGGTACGTAATC 59.727 41.667 9.90 0.00 0.00 1.75
4124 6196 1.439693 AATGCGCGTAACGTGTTGC 60.440 52.632 8.43 0.00 46.11 4.17
4126 6198 0.111001 GACAATGCGCGTAACGTGTT 60.111 50.000 8.43 0.00 46.11 3.32
4135 6207 2.391821 GACAGACGACAATGCGCG 59.608 61.111 0.00 0.00 33.86 6.86
4153 6225 9.503427 GGCTCTTGTACAAATTATTACATGAAC 57.497 33.333 10.03 9.62 34.04 3.18
4266 6338 7.440523 AGGACAAACACAAGAGATTATTGAC 57.559 36.000 0.00 0.00 0.00 3.18
4376 6792 6.582295 CCAACATAGACAACATGCAACTTTAC 59.418 38.462 0.00 0.00 0.00 2.01
4427 6893 1.686355 ATTTGCACGGTGACTCCAAA 58.314 45.000 13.29 12.50 35.57 3.28
4438 6904 5.002840 CGAGCTGAAAAAGATAATTTGCACG 59.997 40.000 0.00 0.00 0.00 5.34
4440 6906 4.858692 GCGAGCTGAAAAAGATAATTTGCA 59.141 37.500 0.00 0.00 0.00 4.08
4442 6908 4.496895 CGGCGAGCTGAAAAAGATAATTTG 59.503 41.667 0.00 0.00 0.00 2.32
4450 6916 1.732259 ACATACGGCGAGCTGAAAAAG 59.268 47.619 16.62 0.00 0.00 2.27
4564 7057 5.113383 TGTTCCATTATCGCTGTCGTTAAT 58.887 37.500 0.00 0.00 39.69 1.40
4566 7059 4.112716 TGTTCCATTATCGCTGTCGTTA 57.887 40.909 0.00 0.00 36.96 3.18
4568 7061 2.665649 TGTTCCATTATCGCTGTCGT 57.334 45.000 0.00 0.00 36.96 4.34
4569 7062 3.060272 GTCATGTTCCATTATCGCTGTCG 60.060 47.826 0.00 0.00 0.00 4.35
4670 7166 2.079925 GGAGTCACTGCCTTCATGAAC 58.920 52.381 3.38 0.00 0.00 3.18
4671 7167 1.699083 TGGAGTCACTGCCTTCATGAA 59.301 47.619 8.12 8.12 0.00 2.57
4675 7171 4.574674 AATATTGGAGTCACTGCCTTCA 57.425 40.909 0.00 0.00 0.00 3.02
4755 7273 3.507622 ACATTCCTTTGCTAAGAACAGCC 59.492 43.478 9.62 0.00 41.04 4.85
4871 7389 3.660669 TGGAAGGAAAGAAAGGGGTACAT 59.339 43.478 0.00 0.00 0.00 2.29
4889 7407 9.101655 GTATAAGCCGTAAGTAGATTTTTGGAA 57.898 33.333 0.00 0.00 0.00 3.53
4905 7423 9.609346 AAGATATTTGTAAACTGTATAAGCCGT 57.391 29.630 0.00 0.00 0.00 5.68


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.