Multiple sequence alignment - TraesCS4D01G321800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G321800 chr4D 100.000 5554 0 0 1 5554 484273769 484268216 0.000000e+00 10257
1 TraesCS4D01G321800 chr4D 100.000 159 0 0 5297 5455 98584808 98584650 1.510000e-75 294
2 TraesCS4D01G321800 chr4B 93.167 4566 212 43 784 5297 615777364 615772847 0.000000e+00 6612
3 TraesCS4D01G321800 chr4B 87.940 597 30 27 110 698 615778083 615777521 0.000000e+00 665
4 TraesCS4D01G321800 chr4B 93.000 100 2 3 5456 5554 615772854 615772759 2.090000e-29 141
5 TraesCS4D01G321800 chr5A 92.031 3564 171 50 1757 5272 664535864 664532366 0.000000e+00 4903
6 TraesCS4D01G321800 chr5A 90.145 1654 101 36 126 1753 664537514 664535897 0.000000e+00 2095
7 TraesCS4D01G321800 chr5A 90.641 577 40 8 1187 1753 32012215 32012787 0.000000e+00 754
8 TraesCS4D01G321800 chr5A 98.742 159 2 0 5298 5456 68623592 68623434 3.280000e-72 283
9 TraesCS4D01G321800 chr2A 91.508 577 35 8 1187 1753 164918346 164917774 0.000000e+00 782
10 TraesCS4D01G321800 chr2A 90.815 577 38 11 1187 1753 780183311 780182740 0.000000e+00 758
11 TraesCS4D01G321800 chr6A 91.161 577 37 8 1187 1753 439515426 439515998 0.000000e+00 771
12 TraesCS4D01G321800 chr6A 100.000 158 0 0 5298 5455 609726258 609726415 5.440000e-75 292
13 TraesCS4D01G321800 chr6A 96.471 170 6 0 5292 5461 590101405 590101574 1.180000e-71 281
14 TraesCS4D01G321800 chr4A 91.161 577 37 8 1187 1753 411855685 411855113 0.000000e+00 771
15 TraesCS4D01G321800 chr3B 86.851 578 34 20 1187 1753 83159077 83159623 4.760000e-170 608
16 TraesCS4D01G321800 chr5B 86.505 578 36 21 1187 1753 400140589 400140043 1.030000e-166 597
17 TraesCS4D01G321800 chr5B 98.750 160 2 0 5297 5456 455378937 455378778 9.110000e-73 285
18 TraesCS4D01G321800 chr3D 86.905 504 27 17 1187 1679 216614221 216613746 3.810000e-146 529
19 TraesCS4D01G321800 chr7A 99.371 159 1 0 5298 5456 118439990 118439832 7.040000e-74 289
20 TraesCS4D01G321800 chr7A 99.367 158 1 0 5298 5455 579231302 579231459 2.530000e-73 287
21 TraesCS4D01G321800 chr3A 99.367 158 1 0 5298 5455 46839961 46840118 2.530000e-73 287
22 TraesCS4D01G321800 chr3A 98.750 160 2 0 5298 5457 392776412 392776253 9.110000e-73 285


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G321800 chr4D 484268216 484273769 5553 True 10257.000000 10257 100.000 1 5554 1 chr4D.!!$R2 5553
1 TraesCS4D01G321800 chr4B 615772759 615778083 5324 True 2472.666667 6612 91.369 110 5554 3 chr4B.!!$R1 5444
2 TraesCS4D01G321800 chr5A 664532366 664537514 5148 True 3499.000000 4903 91.088 126 5272 2 chr5A.!!$R2 5146
3 TraesCS4D01G321800 chr5A 32012215 32012787 572 False 754.000000 754 90.641 1187 1753 1 chr5A.!!$F1 566
4 TraesCS4D01G321800 chr2A 164917774 164918346 572 True 782.000000 782 91.508 1187 1753 1 chr2A.!!$R1 566
5 TraesCS4D01G321800 chr2A 780182740 780183311 571 True 758.000000 758 90.815 1187 1753 1 chr2A.!!$R2 566
6 TraesCS4D01G321800 chr6A 439515426 439515998 572 False 771.000000 771 91.161 1187 1753 1 chr6A.!!$F1 566
7 TraesCS4D01G321800 chr4A 411855113 411855685 572 True 771.000000 771 91.161 1187 1753 1 chr4A.!!$R1 566
8 TraesCS4D01G321800 chr3B 83159077 83159623 546 False 608.000000 608 86.851 1187 1753 1 chr3B.!!$F1 566
9 TraesCS4D01G321800 chr5B 400140043 400140589 546 True 597.000000 597 86.505 1187 1753 1 chr5B.!!$R1 566

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
929 1035 0.038159 GGATAGCGAGGTCAATCCCG 60.038 60.0 0.00 0.00 36.75 5.14 F
1174 1284 0.036732 TGATGACAGTCCTGGTTGGC 59.963 55.0 0.00 0.00 35.26 4.52 F
1753 1875 0.109597 CGAGCTGTTGGCATTGTTCC 60.110 55.0 0.00 0.00 44.79 3.62 F
2361 2522 0.036010 CAGGATCGCAAAGGGAGTGT 60.036 55.0 0.00 0.00 0.00 3.55 F
3202 3363 0.102663 GGTACAAGAGCTCGGCTACC 59.897 60.0 16.35 16.35 39.88 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1734 1856 0.109597 GGAACAATGCCAACAGCTCG 60.110 55.000 0.00 0.00 44.23 5.03 R
2008 2160 1.081892 CGAAGGAGACATGCTTGGTG 58.918 55.000 4.44 0.00 37.20 4.17 R
3743 3904 0.767375 AACCTCCCCGGATCATCATG 59.233 55.000 0.73 0.00 36.31 3.07 R
3981 4154 1.153489 CATCGTCCTGGACTGCTGG 60.153 63.158 23.49 8.63 0.00 4.85 R
4575 4751 0.601046 TGCTCTGAACACCAAGCTCG 60.601 55.000 0.00 0.00 35.76 5.03 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 2.632377 CGTAGTACGTACCAGGGAAGA 58.368 52.381 21.80 0.00 36.74 2.87
27 28 2.352960 CGTAGTACGTACCAGGGAAGAC 59.647 54.545 21.80 6.78 36.74 3.01
28 29 1.457346 AGTACGTACCAGGGAAGACG 58.543 55.000 21.80 9.46 41.02 4.18
29 30 0.453390 GTACGTACCAGGGAAGACGG 59.547 60.000 15.00 0.00 39.57 4.79
30 31 1.315257 TACGTACCAGGGAAGACGGC 61.315 60.000 13.59 0.00 39.57 5.68
31 32 2.642254 CGTACCAGGGAAGACGGCA 61.642 63.158 0.00 0.00 0.00 5.69
32 33 1.675219 GTACCAGGGAAGACGGCAA 59.325 57.895 0.00 0.00 0.00 4.52
33 34 0.252197 GTACCAGGGAAGACGGCAAT 59.748 55.000 0.00 0.00 0.00 3.56
34 35 0.251916 TACCAGGGAAGACGGCAATG 59.748 55.000 0.00 0.00 0.00 2.82
35 36 1.750399 CCAGGGAAGACGGCAATGG 60.750 63.158 0.00 0.00 0.00 3.16
36 37 2.044946 AGGGAAGACGGCAATGGC 60.045 61.111 0.00 0.00 40.13 4.40
44 45 3.427425 CGGCAATGGCGTTTCCGA 61.427 61.111 23.34 0.00 46.33 4.55
45 46 2.760159 CGGCAATGGCGTTTCCGAT 61.760 57.895 23.34 0.00 46.33 4.18
46 47 1.510844 GGCAATGGCGTTTCCGATT 59.489 52.632 0.00 0.00 42.47 3.34
47 48 0.736053 GGCAATGGCGTTTCCGATTA 59.264 50.000 0.00 0.00 42.47 1.75
48 49 1.336755 GGCAATGGCGTTTCCGATTAT 59.663 47.619 0.00 0.00 42.47 1.28
49 50 2.604614 GGCAATGGCGTTTCCGATTATC 60.605 50.000 0.00 0.00 42.47 1.75
50 51 2.032799 GCAATGGCGTTTCCGATTATCA 59.967 45.455 0.00 0.00 37.80 2.15
51 52 3.304659 GCAATGGCGTTTCCGATTATCAT 60.305 43.478 0.00 0.00 37.80 2.45
52 53 4.466828 CAATGGCGTTTCCGATTATCATC 58.533 43.478 0.00 0.00 37.80 2.92
69 70 9.599322 GATTATCATCGGCTAGTTAATTTGTTG 57.401 33.333 0.00 0.00 0.00 3.33
70 71 8.500753 TTATCATCGGCTAGTTAATTTGTTGT 57.499 30.769 0.00 0.00 0.00 3.32
71 72 6.811253 TCATCGGCTAGTTAATTTGTTGTT 57.189 33.333 0.00 0.00 0.00 2.83
72 73 7.908827 TCATCGGCTAGTTAATTTGTTGTTA 57.091 32.000 0.00 0.00 0.00 2.41
73 74 7.745015 TCATCGGCTAGTTAATTTGTTGTTAC 58.255 34.615 0.00 0.00 0.00 2.50
74 75 7.388224 TCATCGGCTAGTTAATTTGTTGTTACA 59.612 33.333 0.00 0.00 0.00 2.41
75 76 7.124347 TCGGCTAGTTAATTTGTTGTTACAG 57.876 36.000 0.00 0.00 35.28 2.74
76 77 5.793457 CGGCTAGTTAATTTGTTGTTACAGC 59.207 40.000 0.00 0.00 35.28 4.40
77 78 5.793457 GGCTAGTTAATTTGTTGTTACAGCG 59.207 40.000 0.00 0.00 35.28 5.18
78 79 6.347888 GGCTAGTTAATTTGTTGTTACAGCGA 60.348 38.462 0.00 0.00 35.28 4.93
79 80 6.736853 GCTAGTTAATTTGTTGTTACAGCGAG 59.263 38.462 0.00 0.00 35.28 5.03
80 81 5.449304 AGTTAATTTGTTGTTACAGCGAGC 58.551 37.500 0.00 0.00 35.28 5.03
81 82 2.594529 ATTTGTTGTTACAGCGAGCG 57.405 45.000 0.00 0.00 35.28 5.03
82 83 1.573026 TTTGTTGTTACAGCGAGCGA 58.427 45.000 0.00 0.00 35.28 4.93
83 84 1.136690 TTGTTGTTACAGCGAGCGAG 58.863 50.000 0.00 0.00 35.28 5.03
84 85 0.666274 TGTTGTTACAGCGAGCGAGG 60.666 55.000 0.00 0.00 0.00 4.63
85 86 1.080093 TTGTTACAGCGAGCGAGGG 60.080 57.895 0.00 0.00 0.00 4.30
86 87 1.529152 TTGTTACAGCGAGCGAGGGA 61.529 55.000 0.00 0.00 0.00 4.20
87 88 1.226717 GTTACAGCGAGCGAGGGAG 60.227 63.158 0.00 0.00 0.00 4.30
88 89 2.415608 TTACAGCGAGCGAGGGAGG 61.416 63.158 0.00 0.00 0.00 4.30
98 99 4.760220 GAGGGAGGGAGGGGGCAA 62.760 72.222 0.00 0.00 0.00 4.52
99 100 4.301662 AGGGAGGGAGGGGGCAAA 62.302 66.667 0.00 0.00 0.00 3.68
100 101 3.744155 GGGAGGGAGGGGGCAAAG 61.744 72.222 0.00 0.00 0.00 2.77
101 102 4.448976 GGAGGGAGGGGGCAAAGC 62.449 72.222 0.00 0.00 0.00 3.51
102 103 4.803908 GAGGGAGGGGGCAAAGCG 62.804 72.222 0.00 0.00 0.00 4.68
105 106 4.035102 GGAGGGGGCAAAGCGACT 62.035 66.667 0.00 0.00 0.00 4.18
106 107 2.436824 GAGGGGGCAAAGCGACTC 60.437 66.667 0.00 0.00 0.00 3.36
107 108 4.394712 AGGGGGCAAAGCGACTCG 62.395 66.667 0.00 0.00 0.00 4.18
187 188 2.588877 CCGTCCCGTCCATGCATC 60.589 66.667 0.00 0.00 0.00 3.91
211 218 3.746436 TGCATGGCATGGGCTCCT 61.746 61.111 27.48 0.00 40.87 3.69
212 219 3.224324 GCATGGCATGGGCTCCTG 61.224 66.667 27.48 2.71 40.87 3.86
213 220 2.277737 CATGGCATGGGCTCCTGT 59.722 61.111 19.80 0.00 40.87 4.00
261 268 1.581934 CGCCATTCATAAGCCTCGAA 58.418 50.000 0.00 0.00 0.00 3.71
263 270 1.261619 GCCATTCATAAGCCTCGAACG 59.738 52.381 0.00 0.00 0.00 3.95
264 271 2.821546 CCATTCATAAGCCTCGAACGA 58.178 47.619 0.00 0.00 0.00 3.85
265 272 3.194861 CCATTCATAAGCCTCGAACGAA 58.805 45.455 0.00 0.00 0.00 3.85
266 273 3.001330 CCATTCATAAGCCTCGAACGAAC 59.999 47.826 0.00 0.00 0.00 3.95
267 274 3.306917 TTCATAAGCCTCGAACGAACA 57.693 42.857 0.00 0.00 0.00 3.18
268 275 3.306917 TCATAAGCCTCGAACGAACAA 57.693 42.857 0.00 0.00 0.00 2.83
269 276 3.250744 TCATAAGCCTCGAACGAACAAG 58.749 45.455 0.00 0.00 0.00 3.16
270 277 1.425412 TAAGCCTCGAACGAACAAGC 58.575 50.000 0.00 0.14 0.00 4.01
271 278 0.249911 AAGCCTCGAACGAACAAGCT 60.250 50.000 0.00 2.32 0.00 3.74
272 279 0.667792 AGCCTCGAACGAACAAGCTC 60.668 55.000 0.00 0.00 0.00 4.09
273 280 1.945776 GCCTCGAACGAACAAGCTCG 61.946 60.000 0.00 0.00 44.50 5.03
274 281 1.412606 CTCGAACGAACAAGCTCGC 59.587 57.895 0.00 0.00 42.69 5.03
277 284 0.731514 CGAACGAACAAGCTCGCCTA 60.732 55.000 0.00 0.00 42.69 3.93
299 306 1.363443 CAGCGCCATCTCCTCTCTC 59.637 63.158 2.29 0.00 0.00 3.20
315 322 2.441164 TCTCTCTGCTCCTCCGCC 60.441 66.667 0.00 0.00 0.00 6.13
338 348 4.122776 GGAGCTTATCATTCTTCGCTGAA 58.877 43.478 0.00 0.00 0.00 3.02
375 385 0.321653 CCAGCTAGCCGTGGTTCTTT 60.322 55.000 12.13 0.00 0.00 2.52
382 392 1.898574 CCGTGGTTCTTTGCCTGCT 60.899 57.895 0.00 0.00 0.00 4.24
453 467 1.707427 ACCCTTGGATGCTCTTCTTGT 59.293 47.619 0.00 0.00 0.00 3.16
480 494 2.758089 CGGTTCGTCCCTCGTCGAT 61.758 63.158 0.00 0.00 40.80 3.59
532 546 8.940768 TTCTTGTTTAGCTAGCATTTGTTTTT 57.059 26.923 18.83 0.00 0.00 1.94
534 548 6.523676 TGTTTAGCTAGCATTTGTTTTTGC 57.476 33.333 18.83 0.00 39.17 3.68
566 580 3.463944 GTTCGTTCCTTGTTCTTGGAGA 58.536 45.455 0.00 0.00 33.46 3.71
595 609 3.015293 GATCTGCGTGCACGTGGTG 62.015 63.158 36.80 23.91 42.22 4.17
712 727 9.539825 TCATGAATCTGACTAGCTTATTTCTTC 57.460 33.333 0.00 0.00 0.00 2.87
727 742 0.695924 TCTTCGGGGAATTCCTTGCA 59.304 50.000 23.63 6.56 35.95 4.08
739 797 6.128200 GGGAATTCCTTGCATGTTGAATTTTC 60.128 38.462 23.63 10.87 37.51 2.29
745 803 5.107375 CCTTGCATGTTGAATTTTCCTTTCG 60.107 40.000 0.00 0.00 0.00 3.46
755 813 0.317770 TTTCCTTTCGCGCTTGCAAG 60.318 50.000 22.44 22.44 39.07 4.01
762 820 3.485947 TTCGCGCTTGCAAGAATAAAT 57.514 38.095 30.39 0.00 39.07 1.40
766 824 5.577835 TCGCGCTTGCAAGAATAAATAAAT 58.422 33.333 30.39 0.00 39.07 1.40
767 825 6.720343 TCGCGCTTGCAAGAATAAATAAATA 58.280 32.000 30.39 0.00 39.07 1.40
769 827 7.698550 TCGCGCTTGCAAGAATAAATAAATAAA 59.301 29.630 30.39 0.00 39.07 1.40
929 1035 0.038159 GGATAGCGAGGTCAATCCCG 60.038 60.000 0.00 0.00 36.75 5.14
986 1092 0.104671 GCAGACTGCTGGATCTCTCC 59.895 60.000 20.41 0.00 42.53 3.71
991 1097 0.102120 CTGCTGGATCTCTCCGACAC 59.898 60.000 0.00 0.00 45.37 3.67
995 1101 0.532573 TGGATCTCTCCGACACTTGC 59.467 55.000 0.00 0.00 45.37 4.01
1009 1115 1.063649 CTTGCGACCATGATGCAGC 59.936 57.895 0.00 0.00 40.15 5.25
1141 1251 3.519107 TCATCTCCAGATACCTTTGCACA 59.481 43.478 0.00 0.00 32.63 4.57
1150 1260 2.507339 ACCTTTGCACACCATTTTCG 57.493 45.000 0.00 0.00 0.00 3.46
1174 1284 0.036732 TGATGACAGTCCTGGTTGGC 59.963 55.000 0.00 0.00 35.26 4.52
1178 1288 0.741221 GACAGTCCTGGTTGGCGATC 60.741 60.000 0.00 0.00 35.26 3.69
1185 1295 2.046700 GGTTGGCGATCGGGTTCA 60.047 61.111 18.30 0.00 0.00 3.18
1204 1314 5.106712 GGTTCACAGCAAGTTTAATCGATCA 60.107 40.000 0.00 0.00 0.00 2.92
1313 1423 1.505353 GACGTCCCGGTGAGTAGTG 59.495 63.158 3.51 0.00 0.00 2.74
1327 1438 1.840635 AGTAGTGCAATCCCTTCCCTC 59.159 52.381 0.00 0.00 0.00 4.30
1339 1450 3.078305 TCCCTTCCCTCTTCTTTCTCTCT 59.922 47.826 0.00 0.00 0.00 3.10
1379 1490 3.760151 CACTGCATCATTTTCTTCCCTGA 59.240 43.478 0.00 0.00 0.00 3.86
1380 1491 3.760684 ACTGCATCATTTTCTTCCCTGAC 59.239 43.478 0.00 0.00 0.00 3.51
1386 1497 2.444033 TTTTCTTCCCTGACCCCCTA 57.556 50.000 0.00 0.00 0.00 3.53
1443 1560 2.775490 AAGGACCTGGAAAGCCTTTT 57.225 45.000 0.00 0.00 37.46 2.27
1445 1564 2.598565 AGGACCTGGAAAGCCTTTTTC 58.401 47.619 0.00 0.00 34.31 2.29
1455 1574 4.322273 GGAAAGCCTTTTTCTCATTCCAGG 60.322 45.833 0.00 0.00 35.92 4.45
1476 1595 5.065218 CAGGCACATACTACTGTCCAATTTC 59.935 44.000 0.00 0.00 0.00 2.17
1497 1616 4.287552 TCCAGTTAGGTGGGTAGATCTTC 58.712 47.826 0.00 0.00 38.26 2.87
1590 1709 1.410050 TTGCCTGAGAGGACAGCACA 61.410 55.000 0.00 0.00 37.67 4.57
1591 1710 1.079266 GCCTGAGAGGACAGCACAG 60.079 63.158 0.00 0.00 37.67 3.66
1655 1777 0.399833 TACTGCTGGGCACAATCACA 59.600 50.000 0.00 0.00 33.79 3.58
1703 1825 2.135664 GCATCATTGCTTGCCATCTC 57.864 50.000 1.28 0.00 45.77 2.75
1734 1856 6.360370 TCAATAAGTAGGAGGCCATATGTC 57.640 41.667 5.01 0.00 0.00 3.06
1753 1875 0.109597 CGAGCTGTTGGCATTGTTCC 60.110 55.000 0.00 0.00 44.79 3.62
1754 1876 0.961019 GAGCTGTTGGCATTGTTCCA 59.039 50.000 0.00 0.00 44.79 3.53
1795 1947 3.506455 TGTACAACTCTCTGCAGTACTCC 59.494 47.826 14.67 0.00 36.80 3.85
1821 1973 2.785868 GCATGAGGCAGTACCCAAG 58.214 57.895 0.00 0.00 43.97 3.61
1837 1989 4.924187 AGATCCTCCTCGGCCCCG 62.924 72.222 0.00 0.00 41.35 5.73
1909 2061 1.078848 GAGAGTGCCCAGCGTCATT 60.079 57.895 0.00 0.00 0.00 2.57
1983 2135 2.203451 GGATGATGCCAGGCAGGG 60.203 66.667 21.51 0.00 43.65 4.45
2055 2207 0.773644 AAGAATCCTGCCCGGCATAT 59.226 50.000 13.86 7.07 38.13 1.78
2107 2259 2.196925 CGGGGATGACGAGAGGGAG 61.197 68.421 0.00 0.00 0.00 4.30
2166 2324 1.001641 GTGATGGGTGGAGCAAGCT 60.002 57.895 0.00 0.00 0.00 3.74
2227 2385 2.047179 AAGAAGGAGTTCGCGGCC 60.047 61.111 6.13 2.92 37.79 6.13
2260 2418 2.217038 GGTGTGGGAGCAGTCCAGA 61.217 63.158 0.00 0.00 46.07 3.86
2359 2520 1.078143 GCAGGATCGCAAAGGGAGT 60.078 57.895 0.00 0.00 0.00 3.85
2361 2522 0.036010 CAGGATCGCAAAGGGAGTGT 60.036 55.000 0.00 0.00 0.00 3.55
2428 2589 3.523681 AAGGAGGGGCAAGGAGGGT 62.524 63.158 0.00 0.00 0.00 4.34
2487 2648 4.544689 CTCTCTGACGAGCGCGGG 62.545 72.222 15.86 4.10 43.17 6.13
2845 3006 0.831288 CCAAGGAAATGCACCACCCA 60.831 55.000 0.00 0.00 0.00 4.51
2866 3027 4.426112 CTGCTGCGCTCGGAGTCA 62.426 66.667 9.73 9.43 35.92 3.41
2941 3102 2.511145 GCCAGGAAGCAGCTCTCG 60.511 66.667 0.00 0.00 0.00 4.04
3196 3357 0.608640 AAGGGTGGTACAAGAGCTCG 59.391 55.000 8.37 0.00 44.16 5.03
3202 3363 0.102663 GGTACAAGAGCTCGGCTACC 59.897 60.000 16.35 16.35 39.88 3.18
3310 3471 0.475048 AGTTCCTTTCGGAGGGGGAA 60.475 55.000 0.00 0.00 46.31 3.97
3427 3588 0.770948 AAGGGAGGAAGGACGGGTTT 60.771 55.000 0.00 0.00 0.00 3.27
3574 3735 3.612247 GATGGGCACGCTGGTCACT 62.612 63.158 0.00 0.00 0.00 3.41
3620 3781 1.903877 CGTCCTGCAGGTGAGGGATT 61.904 60.000 31.58 0.00 36.34 3.01
3648 3809 5.981315 CACTTGCTGTTGTTTCAGAATTCAT 59.019 36.000 8.44 0.00 37.61 2.57
3800 3961 1.077429 ATTGGAGGCTTCCTTCGGC 60.077 57.895 16.82 0.00 44.36 5.54
3880 4049 3.374988 CCGCTGCTCATGTCTGAATTTTA 59.625 43.478 0.00 0.00 0.00 1.52
3881 4050 4.142622 CCGCTGCTCATGTCTGAATTTTAA 60.143 41.667 0.00 0.00 0.00 1.52
3883 4052 5.454554 CGCTGCTCATGTCTGAATTTTAATG 59.545 40.000 0.00 0.00 0.00 1.90
3895 4068 9.195411 GTCTGAATTTTAATGCAATGTTCAGAA 57.805 29.630 21.20 10.67 42.46 3.02
3902 4075 8.984891 TTTAATGCAATGTTCAGAAGTTATGG 57.015 30.769 0.00 0.00 0.00 2.74
3941 4114 3.087031 CTCAGAACCAGGCAATTCATGT 58.913 45.455 0.00 0.00 0.00 3.21
3981 4154 3.569701 TGAAGAAATCCCACAAGCAAGTC 59.430 43.478 0.00 0.00 0.00 3.01
4050 4223 3.253188 CCCGACAAAAGCTTTCATCAGAA 59.747 43.478 13.10 0.00 0.00 3.02
4064 4237 1.154263 CAGAACCGTCCTCGTCGTC 60.154 63.158 0.00 0.00 35.01 4.20
4575 4751 3.005261 ACTGACTGACTGACTGTGTGATC 59.995 47.826 0.00 0.00 0.00 2.92
4622 4798 3.824443 ACTTGTACAGTACATTTTGGGGC 59.176 43.478 14.34 0.00 38.68 5.80
4731 4912 4.452455 AGATGTAACTAAGCTTGTGTGTGC 59.548 41.667 9.86 3.38 0.00 4.57
4733 4914 1.663695 AACTAAGCTTGTGTGTGCGT 58.336 45.000 9.86 0.00 0.00 5.24
4735 4916 1.217001 CTAAGCTTGTGTGTGCGTGA 58.783 50.000 9.86 0.00 0.00 4.35
4825 5006 6.091849 CGATTCTTATTCATGCCATGAGTAGG 59.908 42.308 7.55 9.89 40.94 3.18
4826 5007 5.894298 TCTTATTCATGCCATGAGTAGGT 57.106 39.130 15.64 2.84 40.94 3.08
4827 5008 5.614308 TCTTATTCATGCCATGAGTAGGTG 58.386 41.667 15.64 8.85 40.94 4.00
4828 5009 5.366477 TCTTATTCATGCCATGAGTAGGTGA 59.634 40.000 15.64 10.47 40.94 4.02
4829 5010 2.988010 TCATGCCATGAGTAGGTGAC 57.012 50.000 2.53 0.00 33.59 3.67
4831 5012 2.169144 TCATGCCATGAGTAGGTGACAG 59.831 50.000 2.53 0.00 33.59 3.51
4832 5013 1.644509 TGCCATGAGTAGGTGACAGT 58.355 50.000 0.00 0.00 0.00 3.55
4868 5058 0.836606 TGAAGCAACAGACACAGGGA 59.163 50.000 0.00 0.00 0.00 4.20
4869 5059 1.202687 TGAAGCAACAGACACAGGGAG 60.203 52.381 0.00 0.00 0.00 4.30
4880 5070 2.408241 ACAGGGAGCGCTACGAGTC 61.408 63.158 14.83 0.00 0.00 3.36
4891 5083 1.605753 CTACGAGTCCGATGGATGGA 58.394 55.000 0.00 0.00 39.50 3.41
5108 5303 3.766691 GCACCTGCCATGCCCAAG 61.767 66.667 0.00 0.00 37.08 3.61
5118 5313 4.560743 TGCCCAAGCAGACACGCA 62.561 61.111 0.00 0.00 46.52 5.24
5121 5316 2.633657 CCAAGCAGACACGCACAC 59.366 61.111 0.00 0.00 0.00 3.82
5122 5317 2.179547 CCAAGCAGACACGCACACA 61.180 57.895 0.00 0.00 0.00 3.72
5127 5322 1.078709 GCAGACACGCACACATACAT 58.921 50.000 0.00 0.00 0.00 2.29
5129 5324 2.866156 GCAGACACGCACACATACATAT 59.134 45.455 0.00 0.00 0.00 1.78
5138 5333 5.817296 ACGCACACATACATATGTCAGATTT 59.183 36.000 12.68 0.00 44.57 2.17
5196 5391 0.793617 AAGAACTGGGGAGGAGAGGA 59.206 55.000 0.00 0.00 0.00 3.71
5198 5393 1.305381 AACTGGGGAGGAGAGGACG 60.305 63.158 0.00 0.00 0.00 4.79
5199 5394 1.801302 AACTGGGGAGGAGAGGACGA 61.801 60.000 0.00 0.00 0.00 4.20
5289 5494 2.814341 CTCGCTGCTGTGCTGGAG 60.814 66.667 0.00 0.00 0.00 3.86
5290 5495 4.383861 TCGCTGCTGTGCTGGAGG 62.384 66.667 0.00 0.00 0.00 4.30
5292 5497 4.025858 GCTGCTGTGCTGGAGGGA 62.026 66.667 0.00 0.00 0.00 4.20
5293 5498 2.046507 CTGCTGTGCTGGAGGGAC 60.047 66.667 0.00 0.00 36.78 4.46
5294 5499 3.947132 CTGCTGTGCTGGAGGGACG 62.947 68.421 0.00 0.00 39.22 4.79
5295 5500 3.695606 GCTGTGCTGGAGGGACGA 61.696 66.667 0.00 0.00 39.22 4.20
5296 5501 2.575993 CTGTGCTGGAGGGACGAG 59.424 66.667 0.00 0.00 39.22 4.18
5300 5505 4.154347 GCTGGAGGGACGAGCAGG 62.154 72.222 0.00 0.00 46.89 4.85
5301 5506 3.465403 CTGGAGGGACGAGCAGGG 61.465 72.222 0.00 0.00 0.00 4.45
5313 5518 4.554036 GCAGGGGCGGATCCAGAC 62.554 72.222 13.41 6.73 36.21 3.51
5314 5519 2.765807 CAGGGGCGGATCCAGACT 60.766 66.667 13.41 0.76 36.21 3.24
5315 5520 2.041265 AGGGGCGGATCCAGACTT 59.959 61.111 13.41 0.00 36.21 3.01
5316 5521 1.048724 CAGGGGCGGATCCAGACTTA 61.049 60.000 13.41 0.00 36.21 2.24
5317 5522 0.326238 AGGGGCGGATCCAGACTTAA 60.326 55.000 13.41 0.00 36.21 1.85
5318 5523 0.544697 GGGGCGGATCCAGACTTAAA 59.455 55.000 13.41 0.00 36.21 1.52
5319 5524 1.064979 GGGGCGGATCCAGACTTAAAA 60.065 52.381 13.41 0.00 36.21 1.52
5320 5525 2.422945 GGGGCGGATCCAGACTTAAAAT 60.423 50.000 13.41 0.00 36.21 1.82
5321 5526 3.288092 GGGCGGATCCAGACTTAAAATT 58.712 45.455 13.41 0.00 36.21 1.82
5322 5527 4.457466 GGGCGGATCCAGACTTAAAATTA 58.543 43.478 13.41 0.00 36.21 1.40
5323 5528 4.275196 GGGCGGATCCAGACTTAAAATTAC 59.725 45.833 13.41 0.00 36.21 1.89
5324 5529 4.275196 GGCGGATCCAGACTTAAAATTACC 59.725 45.833 13.41 0.00 34.01 2.85
5325 5530 4.275196 GCGGATCCAGACTTAAAATTACCC 59.725 45.833 13.41 0.00 0.00 3.69
5326 5531 4.510340 CGGATCCAGACTTAAAATTACCCG 59.490 45.833 13.41 0.00 0.00 5.28
5327 5532 4.820173 GGATCCAGACTTAAAATTACCCGG 59.180 45.833 6.95 0.00 0.00 5.73
5328 5533 4.914177 TCCAGACTTAAAATTACCCGGT 57.086 40.909 0.00 0.00 0.00 5.28
5329 5534 4.581868 TCCAGACTTAAAATTACCCGGTG 58.418 43.478 0.00 0.00 0.00 4.94
5330 5535 4.041938 TCCAGACTTAAAATTACCCGGTGT 59.958 41.667 0.00 0.00 0.00 4.16
5331 5536 4.393990 CCAGACTTAAAATTACCCGGTGTC 59.606 45.833 0.00 0.00 0.00 3.67
5332 5537 4.393990 CAGACTTAAAATTACCCGGTGTCC 59.606 45.833 0.00 0.00 0.00 4.02
5333 5538 4.041938 AGACTTAAAATTACCCGGTGTCCA 59.958 41.667 0.00 0.00 0.00 4.02
5334 5539 4.925836 ACTTAAAATTACCCGGTGTCCAT 58.074 39.130 0.00 0.00 0.00 3.41
5335 5540 6.064735 ACTTAAAATTACCCGGTGTCCATA 57.935 37.500 0.00 0.00 0.00 2.74
5336 5541 6.665695 ACTTAAAATTACCCGGTGTCCATAT 58.334 36.000 0.00 0.00 0.00 1.78
5337 5542 7.804147 ACTTAAAATTACCCGGTGTCCATATA 58.196 34.615 0.00 0.00 0.00 0.86
5338 5543 7.935210 ACTTAAAATTACCCGGTGTCCATATAG 59.065 37.037 0.00 0.00 0.00 1.31
5339 5544 6.503560 AAAATTACCCGGTGTCCATATAGA 57.496 37.500 0.00 0.00 0.00 1.98
5340 5545 6.503560 AAATTACCCGGTGTCCATATAGAA 57.496 37.500 0.00 0.00 0.00 2.10
5341 5546 5.740290 ATTACCCGGTGTCCATATAGAAG 57.260 43.478 0.00 0.00 0.00 2.85
5342 5547 3.323774 ACCCGGTGTCCATATAGAAGA 57.676 47.619 0.00 0.00 0.00 2.87
5343 5548 3.649843 ACCCGGTGTCCATATAGAAGAA 58.350 45.455 0.00 0.00 0.00 2.52
5344 5549 3.387050 ACCCGGTGTCCATATAGAAGAAC 59.613 47.826 0.00 0.00 0.00 3.01
5345 5550 3.386726 CCCGGTGTCCATATAGAAGAACA 59.613 47.826 0.00 0.00 0.00 3.18
5346 5551 4.369182 CCGGTGTCCATATAGAAGAACAC 58.631 47.826 0.00 0.00 0.00 3.32
5347 5552 4.142026 CCGGTGTCCATATAGAAGAACACA 60.142 45.833 0.00 0.00 0.00 3.72
5348 5553 5.453339 CCGGTGTCCATATAGAAGAACACAT 60.453 44.000 0.00 0.00 0.00 3.21
5349 5554 5.463392 CGGTGTCCATATAGAAGAACACATG 59.537 44.000 5.88 0.00 0.00 3.21
5350 5555 5.237344 GGTGTCCATATAGAAGAACACATGC 59.763 44.000 5.88 0.00 0.00 4.06
5351 5556 5.237344 GTGTCCATATAGAAGAACACATGCC 59.763 44.000 0.00 0.00 0.00 4.40
5352 5557 5.130975 TGTCCATATAGAAGAACACATGCCT 59.869 40.000 0.00 0.00 0.00 4.75
5353 5558 6.326323 TGTCCATATAGAAGAACACATGCCTA 59.674 38.462 0.00 0.00 0.00 3.93
5354 5559 6.647067 GTCCATATAGAAGAACACATGCCTAC 59.353 42.308 0.00 0.00 0.00 3.18
5355 5560 6.326323 TCCATATAGAAGAACACATGCCTACA 59.674 38.462 0.00 0.00 0.00 2.74
5356 5561 7.016563 TCCATATAGAAGAACACATGCCTACAT 59.983 37.037 0.00 0.00 36.79 2.29
5357 5562 8.314021 CCATATAGAAGAACACATGCCTACATA 58.686 37.037 0.00 0.00 33.67 2.29
5358 5563 9.881649 CATATAGAAGAACACATGCCTACATAT 57.118 33.333 0.00 0.00 33.67 1.78
5360 5565 6.239217 AGAAGAACACATGCCTACATATCA 57.761 37.500 0.00 0.00 33.67 2.15
5361 5566 6.653020 AGAAGAACACATGCCTACATATCAA 58.347 36.000 0.00 0.00 33.67 2.57
5362 5567 7.112122 AGAAGAACACATGCCTACATATCAAA 58.888 34.615 0.00 0.00 33.67 2.69
5363 5568 6.683974 AGAACACATGCCTACATATCAAAC 57.316 37.500 0.00 0.00 33.67 2.93
5364 5569 6.179756 AGAACACATGCCTACATATCAAACA 58.820 36.000 0.00 0.00 33.67 2.83
5365 5570 6.658816 AGAACACATGCCTACATATCAAACAA 59.341 34.615 0.00 0.00 33.67 2.83
5366 5571 7.340232 AGAACACATGCCTACATATCAAACAAT 59.660 33.333 0.00 0.00 33.67 2.71
5367 5572 7.408756 ACACATGCCTACATATCAAACAATT 57.591 32.000 0.00 0.00 33.67 2.32
5368 5573 7.259882 ACACATGCCTACATATCAAACAATTG 58.740 34.615 3.24 3.24 33.67 2.32
5369 5574 7.122501 ACACATGCCTACATATCAAACAATTGA 59.877 33.333 13.59 0.00 41.36 2.57
5370 5575 7.975058 CACATGCCTACATATCAAACAATTGAA 59.025 33.333 13.59 0.00 40.86 2.69
5371 5576 8.698210 ACATGCCTACATATCAAACAATTGAAT 58.302 29.630 13.59 2.86 40.86 2.57
5372 5577 8.974408 CATGCCTACATATCAAACAATTGAATG 58.026 33.333 13.59 10.40 40.86 2.67
5380 5585 5.132897 TCAAACAATTGAATGGCCTACAC 57.867 39.130 13.59 0.00 42.47 2.90
5381 5586 4.586421 TCAAACAATTGAATGGCCTACACA 59.414 37.500 13.59 0.00 42.47 3.72
5382 5587 4.519540 AACAATTGAATGGCCTACACAC 57.480 40.909 13.59 0.00 0.00 3.82
5383 5588 3.766545 ACAATTGAATGGCCTACACACT 58.233 40.909 13.59 0.00 0.00 3.55
5384 5589 4.917385 ACAATTGAATGGCCTACACACTA 58.083 39.130 13.59 0.00 0.00 2.74
5385 5590 5.321102 ACAATTGAATGGCCTACACACTAA 58.679 37.500 13.59 0.00 0.00 2.24
5386 5591 5.415701 ACAATTGAATGGCCTACACACTAAG 59.584 40.000 13.59 0.00 0.00 2.18
5387 5592 2.985896 TGAATGGCCTACACACTAAGC 58.014 47.619 3.32 0.00 0.00 3.09
5388 5593 2.289565 GAATGGCCTACACACTAAGCC 58.710 52.381 3.32 0.00 44.13 4.35
5390 5595 3.948735 GGCCTACACACTAAGCCAA 57.051 52.632 0.00 0.00 43.32 4.52
5391 5596 2.420058 GGCCTACACACTAAGCCAAT 57.580 50.000 0.00 0.00 43.32 3.16
5392 5597 3.553828 GGCCTACACACTAAGCCAATA 57.446 47.619 0.00 0.00 43.32 1.90
5393 5598 3.881220 GGCCTACACACTAAGCCAATAA 58.119 45.455 0.00 0.00 43.32 1.40
5394 5599 3.877508 GGCCTACACACTAAGCCAATAAG 59.122 47.826 0.00 0.00 43.32 1.73
5395 5600 4.514401 GCCTACACACTAAGCCAATAAGT 58.486 43.478 0.00 0.00 0.00 2.24
5396 5601 4.332819 GCCTACACACTAAGCCAATAAGTG 59.667 45.833 0.37 0.37 44.89 3.16
5397 5602 4.332819 CCTACACACTAAGCCAATAAGTGC 59.667 45.833 1.78 0.00 43.53 4.40
5398 5603 3.750371 ACACACTAAGCCAATAAGTGCA 58.250 40.909 1.78 0.00 43.53 4.57
5399 5604 4.335416 ACACACTAAGCCAATAAGTGCAT 58.665 39.130 0.00 0.00 43.53 3.96
5400 5605 4.156556 ACACACTAAGCCAATAAGTGCATG 59.843 41.667 0.00 0.00 43.53 4.06
5401 5606 3.129287 ACACTAAGCCAATAAGTGCATGC 59.871 43.478 11.82 11.82 43.53 4.06
5402 5607 3.129113 CACTAAGCCAATAAGTGCATGCA 59.871 43.478 18.46 18.46 34.73 3.96
5403 5608 3.763360 ACTAAGCCAATAAGTGCATGCAA 59.237 39.130 24.58 7.64 0.00 4.08
5404 5609 3.681593 AAGCCAATAAGTGCATGCAAA 57.318 38.095 24.58 11.67 0.00 3.68
5405 5610 3.899052 AGCCAATAAGTGCATGCAAAT 57.101 38.095 24.58 16.60 0.00 2.32
5406 5611 4.210724 AGCCAATAAGTGCATGCAAATT 57.789 36.364 24.58 21.63 0.00 1.82
5407 5612 3.936453 AGCCAATAAGTGCATGCAAATTG 59.064 39.130 28.21 28.21 0.00 2.32
5408 5613 3.486209 GCCAATAAGTGCATGCAAATTGC 60.486 43.478 29.02 23.52 45.29 3.56
5425 5630 4.248842 CACCCGGTGCCAGTGACA 62.249 66.667 4.16 0.00 33.21 3.58
5426 5631 4.250305 ACCCGGTGCCAGTGACAC 62.250 66.667 0.13 0.13 37.31 3.67
5431 5636 4.250305 GTGCCAGTGACACCGGGT 62.250 66.667 6.32 0.00 31.67 5.28
5432 5637 2.524640 TGCCAGTGACACCGGGTA 60.525 61.111 6.32 5.38 0.00 3.69
5433 5638 2.264794 GCCAGTGACACCGGGTAG 59.735 66.667 6.32 0.00 0.00 3.18
5434 5639 2.264794 CCAGTGACACCGGGTAGC 59.735 66.667 6.32 0.00 0.00 3.58
5435 5640 2.283529 CCAGTGACACCGGGTAGCT 61.284 63.158 6.32 0.00 0.00 3.32
5436 5641 0.968901 CCAGTGACACCGGGTAGCTA 60.969 60.000 6.32 0.00 0.00 3.32
5437 5642 1.112113 CAGTGACACCGGGTAGCTAT 58.888 55.000 6.32 0.00 0.00 2.97
5438 5643 2.304092 CAGTGACACCGGGTAGCTATA 58.696 52.381 6.32 0.00 0.00 1.31
5439 5644 2.034305 CAGTGACACCGGGTAGCTATAC 59.966 54.545 6.32 0.00 0.00 1.47
5440 5645 1.002033 GTGACACCGGGTAGCTATACG 60.002 57.143 6.32 11.66 32.24 3.06
5441 5646 1.312815 GACACCGGGTAGCTATACGT 58.687 55.000 6.32 0.00 32.24 3.57
5442 5647 2.158827 TGACACCGGGTAGCTATACGTA 60.159 50.000 6.32 0.00 32.24 3.57
5443 5648 2.481952 GACACCGGGTAGCTATACGTAG 59.518 54.545 6.32 11.16 32.24 3.51
5452 5657 3.788775 CTATACGTAGCTTCGCCCC 57.211 57.895 13.05 0.00 0.00 5.80
5453 5658 1.245732 CTATACGTAGCTTCGCCCCT 58.754 55.000 13.05 0.00 0.00 4.79
5454 5659 0.956633 TATACGTAGCTTCGCCCCTG 59.043 55.000 13.05 0.00 0.00 4.45
5473 5678 3.706373 GGACGAGGCCTGGCTTGA 61.706 66.667 12.00 0.00 0.00 3.02
5523 5728 2.818714 CCTTGCAGAGCGGCAGAG 60.819 66.667 1.45 0.00 45.88 3.35
5524 5729 3.497932 CTTGCAGAGCGGCAGAGC 61.498 66.667 1.45 3.01 45.88 4.09
5525 5730 4.318949 TTGCAGAGCGGCAGAGCA 62.319 61.111 1.45 5.93 45.88 4.26
5526 5731 4.754667 TGCAGAGCGGCAGAGCAG 62.755 66.667 1.45 0.00 39.25 4.24
5527 5732 4.756458 GCAGAGCGGCAGAGCAGT 62.756 66.667 1.45 0.00 40.15 4.40
5529 5734 4.079850 AGAGCGGCAGAGCAGTGG 62.080 66.667 1.45 0.00 40.15 4.00
5530 5735 4.385405 GAGCGGCAGAGCAGTGGT 62.385 66.667 1.45 0.00 40.15 4.16
5531 5736 4.385405 AGCGGCAGAGCAGTGGTC 62.385 66.667 14.56 14.56 40.15 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 2.352960 CGTCTTCCCTGGTACGTACTAC 59.647 54.545 24.07 10.06 0.00 2.73
8 9 2.632377 CGTCTTCCCTGGTACGTACTA 58.368 52.381 24.07 18.04 0.00 1.82
9 10 1.457346 CGTCTTCCCTGGTACGTACT 58.543 55.000 24.07 0.00 0.00 2.73
10 11 0.453390 CCGTCTTCCCTGGTACGTAC 59.547 60.000 17.56 17.56 33.63 3.67
11 12 1.315257 GCCGTCTTCCCTGGTACGTA 61.315 60.000 0.00 0.00 33.63 3.57
12 13 2.643232 GCCGTCTTCCCTGGTACGT 61.643 63.158 0.00 0.00 33.63 3.57
13 14 2.162338 TTGCCGTCTTCCCTGGTACG 62.162 60.000 0.00 0.00 35.20 3.67
14 15 0.252197 ATTGCCGTCTTCCCTGGTAC 59.748 55.000 0.00 0.00 0.00 3.34
15 16 0.251916 CATTGCCGTCTTCCCTGGTA 59.748 55.000 0.00 0.00 0.00 3.25
16 17 1.002134 CATTGCCGTCTTCCCTGGT 60.002 57.895 0.00 0.00 0.00 4.00
17 18 1.750399 CCATTGCCGTCTTCCCTGG 60.750 63.158 0.00 0.00 0.00 4.45
18 19 2.409870 GCCATTGCCGTCTTCCCTG 61.410 63.158 0.00 0.00 0.00 4.45
19 20 2.044946 GCCATTGCCGTCTTCCCT 60.045 61.111 0.00 0.00 0.00 4.20
20 21 3.508840 CGCCATTGCCGTCTTCCC 61.509 66.667 0.00 0.00 0.00 3.97
21 22 1.862602 AAACGCCATTGCCGTCTTCC 61.863 55.000 0.00 0.00 38.06 3.46
22 23 0.454452 GAAACGCCATTGCCGTCTTC 60.454 55.000 0.00 0.00 38.06 2.87
23 24 1.579429 GAAACGCCATTGCCGTCTT 59.421 52.632 0.00 0.00 38.06 3.01
24 25 2.332654 GGAAACGCCATTGCCGTCT 61.333 57.895 0.00 0.00 38.06 4.18
25 26 2.178273 GGAAACGCCATTGCCGTC 59.822 61.111 0.00 0.00 38.06 4.79
42 43 8.018677 ACAAATTAACTAGCCGATGATAATCG 57.981 34.615 5.38 5.38 43.15 3.34
43 44 9.599322 CAACAAATTAACTAGCCGATGATAATC 57.401 33.333 0.00 0.00 0.00 1.75
44 45 9.120538 ACAACAAATTAACTAGCCGATGATAAT 57.879 29.630 0.00 0.00 0.00 1.28
45 46 8.500753 ACAACAAATTAACTAGCCGATGATAA 57.499 30.769 0.00 0.00 0.00 1.75
46 47 8.500753 AACAACAAATTAACTAGCCGATGATA 57.499 30.769 0.00 0.00 0.00 2.15
47 48 7.391148 AACAACAAATTAACTAGCCGATGAT 57.609 32.000 0.00 0.00 0.00 2.45
48 49 6.811253 AACAACAAATTAACTAGCCGATGA 57.189 33.333 0.00 0.00 0.00 2.92
49 50 7.523219 TGTAACAACAAATTAACTAGCCGATG 58.477 34.615 0.00 0.00 0.00 3.84
50 51 7.625606 GCTGTAACAACAAATTAACTAGCCGAT 60.626 37.037 0.00 0.00 0.00 4.18
51 52 6.347888 GCTGTAACAACAAATTAACTAGCCGA 60.348 38.462 0.00 0.00 0.00 5.54
52 53 5.793457 GCTGTAACAACAAATTAACTAGCCG 59.207 40.000 0.00 0.00 0.00 5.52
53 54 5.793457 CGCTGTAACAACAAATTAACTAGCC 59.207 40.000 0.00 0.00 0.00 3.93
54 55 6.595794 TCGCTGTAACAACAAATTAACTAGC 58.404 36.000 0.00 0.00 0.00 3.42
55 56 6.736853 GCTCGCTGTAACAACAAATTAACTAG 59.263 38.462 0.00 0.00 0.00 2.57
56 57 6.595794 GCTCGCTGTAACAACAAATTAACTA 58.404 36.000 0.00 0.00 0.00 2.24
57 58 5.449304 GCTCGCTGTAACAACAAATTAACT 58.551 37.500 0.00 0.00 0.00 2.24
58 59 4.317291 CGCTCGCTGTAACAACAAATTAAC 59.683 41.667 0.00 0.00 0.00 2.01
59 60 4.211584 TCGCTCGCTGTAACAACAAATTAA 59.788 37.500 0.00 0.00 0.00 1.40
60 61 3.741856 TCGCTCGCTGTAACAACAAATTA 59.258 39.130 0.00 0.00 0.00 1.40
61 62 2.546368 TCGCTCGCTGTAACAACAAATT 59.454 40.909 0.00 0.00 0.00 1.82
62 63 2.139917 TCGCTCGCTGTAACAACAAAT 58.860 42.857 0.00 0.00 0.00 2.32
63 64 1.525197 CTCGCTCGCTGTAACAACAAA 59.475 47.619 0.00 0.00 0.00 2.83
64 65 1.136690 CTCGCTCGCTGTAACAACAA 58.863 50.000 0.00 0.00 0.00 2.83
65 66 0.666274 CCTCGCTCGCTGTAACAACA 60.666 55.000 0.00 0.00 0.00 3.33
66 67 1.352156 CCCTCGCTCGCTGTAACAAC 61.352 60.000 0.00 0.00 0.00 3.32
67 68 1.080093 CCCTCGCTCGCTGTAACAA 60.080 57.895 0.00 0.00 0.00 2.83
68 69 1.934220 CTCCCTCGCTCGCTGTAACA 61.934 60.000 0.00 0.00 0.00 2.41
69 70 1.226717 CTCCCTCGCTCGCTGTAAC 60.227 63.158 0.00 0.00 0.00 2.50
70 71 2.415608 CCTCCCTCGCTCGCTGTAA 61.416 63.158 0.00 0.00 0.00 2.41
71 72 2.829003 CCTCCCTCGCTCGCTGTA 60.829 66.667 0.00 0.00 0.00 2.74
81 82 4.760220 TTGCCCCCTCCCTCCCTC 62.760 72.222 0.00 0.00 0.00 4.30
82 83 4.301662 TTTGCCCCCTCCCTCCCT 62.302 66.667 0.00 0.00 0.00 4.20
83 84 3.744155 CTTTGCCCCCTCCCTCCC 61.744 72.222 0.00 0.00 0.00 4.30
84 85 4.448976 GCTTTGCCCCCTCCCTCC 62.449 72.222 0.00 0.00 0.00 4.30
85 86 4.803908 CGCTTTGCCCCCTCCCTC 62.804 72.222 0.00 0.00 0.00 4.30
88 89 3.978571 GAGTCGCTTTGCCCCCTCC 62.979 68.421 0.00 0.00 0.00 4.30
89 90 2.436824 GAGTCGCTTTGCCCCCTC 60.437 66.667 0.00 0.00 0.00 4.30
90 91 4.394712 CGAGTCGCTTTGCCCCCT 62.395 66.667 0.00 0.00 0.00 4.79
101 102 0.737715 AAGCTAAGCCTTGCGAGTCG 60.738 55.000 8.54 8.54 0.00 4.18
102 103 1.443802 AAAGCTAAGCCTTGCGAGTC 58.556 50.000 0.00 0.00 0.00 3.36
103 104 1.537202 CAAAAGCTAAGCCTTGCGAGT 59.463 47.619 0.00 0.00 0.00 4.18
104 105 1.135575 CCAAAAGCTAAGCCTTGCGAG 60.136 52.381 0.00 0.00 0.00 5.03
105 106 0.881118 CCAAAAGCTAAGCCTTGCGA 59.119 50.000 0.00 0.00 0.00 5.10
106 107 0.733909 GCCAAAAGCTAAGCCTTGCG 60.734 55.000 0.00 0.00 38.99 4.85
107 108 0.733909 CGCCAAAAGCTAAGCCTTGC 60.734 55.000 0.00 0.00 40.39 4.01
108 109 0.881118 TCGCCAAAAGCTAAGCCTTG 59.119 50.000 0.00 0.00 40.39 3.61
210 217 2.743928 GGCAAGCGGGACAGACAG 60.744 66.667 0.00 0.00 0.00 3.51
211 218 4.680237 CGGCAAGCGGGACAGACA 62.680 66.667 0.00 0.00 0.00 3.41
261 268 4.891566 CTAGGCGAGCTTGTTCGT 57.108 55.556 2.14 0.00 42.38 3.85
281 288 1.108727 AGAGAGAGGAGATGGCGCTG 61.109 60.000 7.64 0.00 0.00 5.18
299 306 3.898509 CGGCGGAGGAGCAGAGAG 61.899 72.222 0.00 0.00 39.27 3.20
315 322 2.474359 CAGCGAAGAATGATAAGCTCCG 59.526 50.000 0.00 0.00 32.05 4.63
322 329 2.201732 GCGGTTCAGCGAAGAATGATA 58.798 47.619 1.86 0.00 0.00 2.15
323 330 1.009829 GCGGTTCAGCGAAGAATGAT 58.990 50.000 1.86 0.00 0.00 2.45
324 331 1.019278 GGCGGTTCAGCGAAGAATGA 61.019 55.000 1.86 0.00 38.18 2.57
358 368 0.955919 GCAAAGAACCACGGCTAGCT 60.956 55.000 15.72 0.00 0.00 3.32
417 430 2.582498 GTCGATCTTCCCGGTGCG 60.582 66.667 0.00 0.00 0.00 5.34
470 484 1.006805 GAGGCATCATCGACGAGGG 60.007 63.158 9.92 1.16 0.00 4.30
532 546 3.342627 CGAACCGGACGCAAAGCA 61.343 61.111 9.46 0.00 0.00 3.91
534 548 1.203313 GAACGAACCGGACGCAAAG 59.797 57.895 9.46 0.00 0.00 2.77
566 580 1.226101 CGCAGATCGCACGCATTTT 60.226 52.632 9.58 0.00 42.60 1.82
656 671 0.985490 AGGAGGAGATGAACAGGGGC 60.985 60.000 0.00 0.00 0.00 5.80
712 727 1.135024 CAACATGCAAGGAATTCCCCG 60.135 52.381 21.22 13.20 36.42 5.73
727 742 2.986479 GCGCGAAAGGAAAATTCAACAT 59.014 40.909 12.10 0.00 0.00 2.71
739 797 0.109597 ATTCTTGCAAGCGCGAAAGG 60.110 50.000 21.99 0.00 42.97 3.11
762 820 8.320617 AGAGCAATTGGCCAAAGATTTTATTTA 58.679 29.630 24.71 0.00 46.50 1.40
766 824 5.337491 GGAGAGCAATTGGCCAAAGATTTTA 60.337 40.000 24.71 0.00 46.50 1.52
767 825 4.564199 GGAGAGCAATTGGCCAAAGATTTT 60.564 41.667 24.71 9.06 46.50 1.82
769 827 2.498885 GGAGAGCAATTGGCCAAAGATT 59.501 45.455 24.71 9.92 46.50 2.40
877 983 8.523915 TTTTGCAGGAAATCATGTCATACTAT 57.476 30.769 0.00 0.00 0.00 2.12
878 984 7.936496 TTTTGCAGGAAATCATGTCATACTA 57.064 32.000 0.00 0.00 0.00 1.82
937 1043 2.706890 GAGGCTACTAGGATCTCCGAG 58.293 57.143 4.96 4.96 43.35 4.63
986 1092 0.371301 CATCATGGTCGCAAGTGTCG 59.629 55.000 0.00 0.00 39.48 4.35
991 1097 1.063649 GCTGCATCATGGTCGCAAG 59.936 57.895 0.00 1.92 34.75 4.01
995 1101 1.450848 AGGTGCTGCATCATGGTCG 60.451 57.895 16.28 0.00 0.00 4.79
1150 1260 1.072331 ACCAGGACTGTCATCACCAAC 59.928 52.381 10.38 0.00 0.00 3.77
1157 1267 1.003355 CGCCAACCAGGACTGTCAT 60.003 57.895 10.38 0.00 41.22 3.06
1174 1284 0.670546 ACTTGCTGTGAACCCGATCG 60.671 55.000 8.51 8.51 0.00 3.69
1178 1288 3.666902 CGATTAAACTTGCTGTGAACCCG 60.667 47.826 0.00 0.00 0.00 5.28
1185 1295 4.943705 ACCATGATCGATTAAACTTGCTGT 59.056 37.500 0.00 0.00 0.00 4.40
1204 1314 0.899720 CTGCAATTGAGCCCAACCAT 59.100 50.000 10.34 0.00 34.72 3.55
1313 1423 2.816777 AAGAAGAGGGAAGGGATTGC 57.183 50.000 0.00 0.00 0.00 3.56
1327 1438 8.055279 AGTCTGACAGATAAGAGAGAAAGAAG 57.945 38.462 8.73 0.00 0.00 2.85
1339 1450 6.935167 TGCAGTGAATTAGTCTGACAGATAA 58.065 36.000 8.73 8.73 0.00 1.75
1379 1490 0.324943 GACGCATGCATATAGGGGGT 59.675 55.000 19.57 3.43 0.00 4.95
1380 1491 0.615331 AGACGCATGCATATAGGGGG 59.385 55.000 19.57 0.00 0.00 5.40
1386 1497 7.452880 AATAATTTACCAGACGCATGCATAT 57.547 32.000 19.57 0.00 0.00 1.78
1436 1547 2.174360 GCCTGGAATGAGAAAAAGGCT 58.826 47.619 0.00 0.00 45.42 4.58
1443 1560 4.716784 AGTAGTATGTGCCTGGAATGAGAA 59.283 41.667 0.00 0.00 0.00 2.87
1445 1564 4.141846 ACAGTAGTATGTGCCTGGAATGAG 60.142 45.833 0.00 0.00 30.46 2.90
1455 1574 4.941263 TGGAAATTGGACAGTAGTATGTGC 59.059 41.667 0.00 0.00 41.47 4.57
1476 1595 3.388350 GGAAGATCTACCCACCTAACTGG 59.612 52.174 0.00 0.00 42.93 4.00
1497 1616 6.367149 CGGACAATACATATCATCTGTCAAGG 59.633 42.308 0.00 0.00 35.89 3.61
1590 1709 6.186957 TGACAGCATTATTAATGGGTGTTCT 58.813 36.000 16.22 3.19 41.51 3.01
1591 1710 6.449635 TGACAGCATTATTAATGGGTGTTC 57.550 37.500 16.22 12.57 41.51 3.18
1655 1777 2.677914 GCCAGGTAATTAAGGGGCAAT 58.322 47.619 14.41 0.00 41.02 3.56
1703 1825 5.059833 GCCTCCTACTTATTGATGGACAAG 58.940 45.833 0.00 0.00 42.02 3.16
1734 1856 0.109597 GGAACAATGCCAACAGCTCG 60.110 55.000 0.00 0.00 44.23 5.03
1753 1875 3.885297 ACATGAAACTTGGTCAGGACTTG 59.115 43.478 0.00 0.00 31.41 3.16
1754 1876 4.170468 ACATGAAACTTGGTCAGGACTT 57.830 40.909 0.00 0.00 31.41 3.01
1821 1973 4.916314 TCGGGGCCGAGGAGGATC 62.916 72.222 0.00 0.00 44.01 3.36
1876 2028 1.151668 CTCTCTTGTGCCCTTCGTTG 58.848 55.000 0.00 0.00 0.00 4.10
1983 2135 2.731348 GCCTCGCGACGATCATCC 60.731 66.667 3.71 0.00 34.61 3.51
2008 2160 1.081892 CGAAGGAGACATGCTTGGTG 58.918 55.000 4.44 0.00 37.20 4.17
2055 2207 2.614983 GTGTAAACTTCCTGTTTCGCCA 59.385 45.455 0.00 0.00 44.81 5.69
2092 2244 2.593026 AGAATCTCCCTCTCGTCATCC 58.407 52.381 0.00 0.00 0.00 3.51
2095 2247 1.478510 GCAAGAATCTCCCTCTCGTCA 59.521 52.381 0.00 0.00 0.00 4.35
2394 2555 2.802667 CTTCTCCAATGCGCGTCGG 61.803 63.158 8.43 0.00 0.00 4.79
2455 2616 4.373116 GAGAACGTCCGGCTGCCA 62.373 66.667 20.29 0.00 0.00 4.92
2487 2648 1.084370 CCTCGCGGAAGAACCATCAC 61.084 60.000 6.13 0.00 38.90 3.06
2599 2760 3.154516 GACTCGTCGACGTCGTCT 58.845 61.111 33.88 15.68 40.80 4.18
2941 3102 3.692406 ACGTTCCTCAGCCGGTCC 61.692 66.667 1.90 0.00 0.00 4.46
3043 3204 2.646175 CGGCTCTTCGTCCCAAGGA 61.646 63.158 0.00 0.00 0.00 3.36
3046 3207 4.735132 CGCGGCTCTTCGTCCCAA 62.735 66.667 0.00 0.00 0.00 4.12
3178 3339 1.258445 CCGAGCTCTTGTACCACCCT 61.258 60.000 12.85 0.00 0.00 4.34
3310 3471 2.978010 CCGGCGAGCACTTTTGGT 60.978 61.111 9.30 0.00 35.66 3.67
3427 3588 1.383799 CACCTTCCCCTTGATGCCA 59.616 57.895 0.00 0.00 0.00 4.92
3484 3645 1.956477 GAGTGGAGCTTCTTGCCAAAA 59.044 47.619 0.00 0.00 44.23 2.44
3487 3648 1.376466 GGAGTGGAGCTTCTTGCCA 59.624 57.895 0.00 0.00 44.23 4.92
3526 3687 3.992636 GTCGAGGAAGAACGACGAT 57.007 52.632 0.00 0.00 46.39 3.73
3574 3735 4.414956 ATGAGGACGGAGGGGGCA 62.415 66.667 0.00 0.00 0.00 5.36
3648 3809 3.443681 TGTCAGATTGATCGCACTCACTA 59.556 43.478 0.00 0.00 0.00 2.74
3737 3898 1.339438 CCCCGGATCATCATGTCATCC 60.339 57.143 0.73 9.17 33.85 3.51
3743 3904 0.767375 AACCTCCCCGGATCATCATG 59.233 55.000 0.73 0.00 36.31 3.07
3859 4028 3.482722 AAAATTCAGACATGAGCAGCG 57.517 42.857 0.00 0.00 36.61 5.18
3880 4049 6.594788 ACCATAACTTCTGAACATTGCATT 57.405 33.333 0.00 0.00 0.00 3.56
3881 4050 6.435277 AGAACCATAACTTCTGAACATTGCAT 59.565 34.615 0.00 0.00 0.00 3.96
3883 4052 6.072508 TCAGAACCATAACTTCTGAACATTGC 60.073 38.462 8.13 0.00 46.87 3.56
3895 4068 8.041323 AGACAATATTTCGTCAGAACCATAACT 58.959 33.333 8.24 0.00 35.86 2.24
3902 4075 7.582435 TTCTGAGACAATATTTCGTCAGAAC 57.418 36.000 19.80 7.01 42.98 3.01
3915 4088 2.957402 TTGCCTGGTTCTGAGACAAT 57.043 45.000 0.00 0.00 0.00 2.71
3941 4114 1.904537 TCAGCTTGATCTTGCTCCAGA 59.095 47.619 9.48 3.46 37.44 3.86
3981 4154 1.153489 CATCGTCCTGGACTGCTGG 60.153 63.158 23.49 8.63 0.00 4.85
4199 4375 3.003763 AAGAGGAGGCGGTGGTCC 61.004 66.667 0.00 0.00 0.00 4.46
4313 4489 2.926779 AGCAGCCTCCTGTCAGCA 60.927 61.111 0.00 0.00 41.26 4.41
4316 4492 2.283173 TCGAGCAGCCTCCTGTCA 60.283 61.111 0.00 0.00 41.26 3.58
4390 4566 3.998672 GCCCGTCCACCGAGTTCA 61.999 66.667 0.00 0.00 39.56 3.18
4391 4567 3.644399 GAGCCCGTCCACCGAGTTC 62.644 68.421 0.00 0.00 39.56 3.01
4575 4751 0.601046 TGCTCTGAACACCAAGCTCG 60.601 55.000 0.00 0.00 35.76 5.03
4622 4798 5.163854 ACACAAGAAGAACAGAGAAAACACG 60.164 40.000 0.00 0.00 0.00 4.49
4652 4829 1.534729 AATCCGTCAAAAGCACTCCC 58.465 50.000 0.00 0.00 0.00 4.30
4665 4842 3.691118 CCAACATCTCATCACAAATCCGT 59.309 43.478 0.00 0.00 0.00 4.69
4731 4912 0.948623 TCCTTCCACGCACAATCACG 60.949 55.000 0.00 0.00 0.00 4.35
4733 4914 2.627945 GTATCCTTCCACGCACAATCA 58.372 47.619 0.00 0.00 0.00 2.57
4735 4916 1.742411 CGGTATCCTTCCACGCACAAT 60.742 52.381 0.00 0.00 0.00 2.71
4800 4981 5.936686 ACTCATGGCATGAATAAGAATCG 57.063 39.130 28.50 16.67 39.11 3.34
4825 5006 2.363038 TGTACTGTACCACCACTGTCAC 59.637 50.000 14.91 0.00 33.32 3.67
4826 5007 2.668625 TGTACTGTACCACCACTGTCA 58.331 47.619 14.91 0.00 33.32 3.58
4827 5008 3.510360 AGATGTACTGTACCACCACTGTC 59.490 47.826 14.91 1.92 33.32 3.51
4828 5009 3.258372 CAGATGTACTGTACCACCACTGT 59.742 47.826 14.91 0.00 41.30 3.55
4829 5010 3.509967 TCAGATGTACTGTACCACCACTG 59.490 47.826 14.91 14.64 45.86 3.66
4831 5012 4.495422 CTTCAGATGTACTGTACCACCAC 58.505 47.826 14.91 3.00 45.86 4.16
4832 5013 3.056107 GCTTCAGATGTACTGTACCACCA 60.056 47.826 14.91 0.00 45.86 4.17
4865 5055 4.253257 CGGACTCGTAGCGCTCCC 62.253 72.222 16.34 4.78 0.00 4.30
4868 5058 2.716244 CATCGGACTCGTAGCGCT 59.284 61.111 17.26 17.26 37.69 5.92
4869 5059 2.131294 ATCCATCGGACTCGTAGCGC 62.131 60.000 0.00 0.00 32.98 5.92
4880 5070 2.708051 CCTGATCAATCCATCCATCGG 58.292 52.381 0.00 0.00 0.00 4.18
4891 5083 0.745845 GTCTGCACCGCCTGATCAAT 60.746 55.000 0.00 0.00 0.00 2.57
5102 5297 4.030452 GTGCGTGTCTGCTTGGGC 62.030 66.667 0.00 0.00 39.26 5.36
5103 5298 2.591429 TGTGCGTGTCTGCTTGGG 60.591 61.111 0.00 0.00 35.36 4.12
5104 5299 1.509644 ATGTGTGCGTGTCTGCTTGG 61.510 55.000 0.00 0.00 35.36 3.61
5108 5303 1.078709 ATGTATGTGTGCGTGTCTGC 58.921 50.000 0.00 0.00 0.00 4.26
5113 5308 4.111916 TCTGACATATGTATGTGTGCGTG 58.888 43.478 8.71 0.00 46.20 5.34
5118 5313 8.962884 TGCTAAAATCTGACATATGTATGTGT 57.037 30.769 8.71 0.00 46.20 3.72
5127 5322 8.296713 GTGTTCCTTTTGCTAAAATCTGACATA 58.703 33.333 0.00 0.00 0.00 2.29
5129 5324 6.460953 GGTGTTCCTTTTGCTAAAATCTGACA 60.461 38.462 0.00 0.00 0.00 3.58
5138 5333 2.614983 GACGTGGTGTTCCTTTTGCTAA 59.385 45.455 0.00 0.00 34.23 3.09
5279 5484 2.575993 CTCGTCCCTCCAGCACAG 59.424 66.667 0.00 0.00 0.00 3.66
5280 5485 3.695606 GCTCGTCCCTCCAGCACA 61.696 66.667 0.00 0.00 33.06 4.57
5281 5486 3.655810 CTGCTCGTCCCTCCAGCAC 62.656 68.421 0.00 0.00 38.25 4.40
5282 5487 3.385384 CTGCTCGTCCCTCCAGCA 61.385 66.667 0.00 0.00 40.90 4.41
5294 5499 4.247380 CTGGATCCGCCCCTGCTC 62.247 72.222 7.39 0.00 34.97 4.26
5295 5500 4.804420 TCTGGATCCGCCCCTGCT 62.804 66.667 7.39 0.00 34.97 4.24
5296 5501 4.554036 GTCTGGATCCGCCCCTGC 62.554 72.222 7.39 0.00 34.97 4.85
5297 5502 1.048724 TAAGTCTGGATCCGCCCCTG 61.049 60.000 7.39 0.00 34.97 4.45
5298 5503 0.326238 TTAAGTCTGGATCCGCCCCT 60.326 55.000 7.39 0.00 34.97 4.79
5299 5504 0.544697 TTTAAGTCTGGATCCGCCCC 59.455 55.000 7.39 0.00 34.97 5.80
5300 5505 2.413310 TTTTAAGTCTGGATCCGCCC 57.587 50.000 7.39 0.00 34.97 6.13
5301 5506 4.275196 GGTAATTTTAAGTCTGGATCCGCC 59.725 45.833 7.39 0.00 37.10 6.13
5302 5507 4.275196 GGGTAATTTTAAGTCTGGATCCGC 59.725 45.833 7.39 0.00 0.00 5.54
5303 5508 4.510340 CGGGTAATTTTAAGTCTGGATCCG 59.490 45.833 7.39 2.06 0.00 4.18
5304 5509 4.820173 CCGGGTAATTTTAAGTCTGGATCC 59.180 45.833 4.20 4.20 0.00 3.36
5305 5510 5.296035 CACCGGGTAATTTTAAGTCTGGATC 59.704 44.000 6.32 0.00 0.00 3.36
5306 5511 5.190677 CACCGGGTAATTTTAAGTCTGGAT 58.809 41.667 6.32 0.00 0.00 3.41
5307 5512 4.041938 ACACCGGGTAATTTTAAGTCTGGA 59.958 41.667 6.32 0.00 0.00 3.86
5308 5513 4.329392 ACACCGGGTAATTTTAAGTCTGG 58.671 43.478 6.32 0.00 0.00 3.86
5309 5514 4.393990 GGACACCGGGTAATTTTAAGTCTG 59.606 45.833 6.32 0.00 0.00 3.51
5310 5515 4.041938 TGGACACCGGGTAATTTTAAGTCT 59.958 41.667 6.32 0.00 0.00 3.24
5311 5516 4.325972 TGGACACCGGGTAATTTTAAGTC 58.674 43.478 6.32 0.04 0.00 3.01
5312 5517 4.370094 TGGACACCGGGTAATTTTAAGT 57.630 40.909 6.32 0.00 0.00 2.24
5313 5518 8.152246 TCTATATGGACACCGGGTAATTTTAAG 58.848 37.037 6.32 0.00 0.00 1.85
5314 5519 8.032045 TCTATATGGACACCGGGTAATTTTAA 57.968 34.615 6.32 0.00 0.00 1.52
5315 5520 7.615039 TCTATATGGACACCGGGTAATTTTA 57.385 36.000 6.32 0.00 0.00 1.52
5316 5521 6.503560 TCTATATGGACACCGGGTAATTTT 57.496 37.500 6.32 0.00 0.00 1.82
5317 5522 6.328148 TCTTCTATATGGACACCGGGTAATTT 59.672 38.462 6.32 0.00 0.00 1.82
5318 5523 5.842328 TCTTCTATATGGACACCGGGTAATT 59.158 40.000 6.32 0.00 0.00 1.40
5319 5524 5.399991 TCTTCTATATGGACACCGGGTAAT 58.600 41.667 6.32 1.53 0.00 1.89
5320 5525 4.806892 TCTTCTATATGGACACCGGGTAA 58.193 43.478 6.32 0.00 0.00 2.85
5321 5526 4.458256 TCTTCTATATGGACACCGGGTA 57.542 45.455 6.32 0.00 0.00 3.69
5322 5527 3.323774 TCTTCTATATGGACACCGGGT 57.676 47.619 6.32 0.00 0.00 5.28
5323 5528 3.386726 TGTTCTTCTATATGGACACCGGG 59.613 47.826 6.32 0.00 0.00 5.73
5324 5529 4.142026 TGTGTTCTTCTATATGGACACCGG 60.142 45.833 0.00 0.00 0.00 5.28
5325 5530 5.006153 TGTGTTCTTCTATATGGACACCG 57.994 43.478 6.39 0.00 0.00 4.94
5326 5531 5.237344 GCATGTGTTCTTCTATATGGACACC 59.763 44.000 6.39 0.00 0.00 4.16
5327 5532 5.237344 GGCATGTGTTCTTCTATATGGACAC 59.763 44.000 0.00 0.00 0.00 3.67
5328 5533 5.130975 AGGCATGTGTTCTTCTATATGGACA 59.869 40.000 0.00 0.00 0.00 4.02
5329 5534 5.615289 AGGCATGTGTTCTTCTATATGGAC 58.385 41.667 0.00 0.00 0.00 4.02
5330 5535 5.894298 AGGCATGTGTTCTTCTATATGGA 57.106 39.130 0.00 0.00 0.00 3.41
5331 5536 6.524734 TGTAGGCATGTGTTCTTCTATATGG 58.475 40.000 0.00 0.00 0.00 2.74
5332 5537 9.881649 ATATGTAGGCATGTGTTCTTCTATATG 57.118 33.333 0.00 0.00 36.58 1.78
5334 5539 9.088987 TGATATGTAGGCATGTGTTCTTCTATA 57.911 33.333 0.00 0.00 36.58 1.31
5335 5540 7.966812 TGATATGTAGGCATGTGTTCTTCTAT 58.033 34.615 0.00 0.00 36.58 1.98
5336 5541 7.360113 TGATATGTAGGCATGTGTTCTTCTA 57.640 36.000 0.00 0.00 36.58 2.10
5337 5542 6.239217 TGATATGTAGGCATGTGTTCTTCT 57.761 37.500 0.00 0.00 36.58 2.85
5338 5543 6.925610 TTGATATGTAGGCATGTGTTCTTC 57.074 37.500 0.00 0.00 36.58 2.87
5339 5544 6.658816 TGTTTGATATGTAGGCATGTGTTCTT 59.341 34.615 0.00 0.00 36.58 2.52
5340 5545 6.179756 TGTTTGATATGTAGGCATGTGTTCT 58.820 36.000 0.00 0.00 36.58 3.01
5341 5546 6.435430 TGTTTGATATGTAGGCATGTGTTC 57.565 37.500 0.00 0.00 36.58 3.18
5342 5547 6.832520 TTGTTTGATATGTAGGCATGTGTT 57.167 33.333 0.00 0.00 36.58 3.32
5343 5548 7.122501 TCAATTGTTTGATATGTAGGCATGTGT 59.877 33.333 5.13 0.00 36.94 3.72
5344 5549 7.482474 TCAATTGTTTGATATGTAGGCATGTG 58.518 34.615 5.13 0.00 36.94 3.21
5345 5550 7.643569 TCAATTGTTTGATATGTAGGCATGT 57.356 32.000 5.13 0.00 36.94 3.21
5346 5551 8.974408 CATTCAATTGTTTGATATGTAGGCATG 58.026 33.333 5.13 0.00 41.38 4.06
5347 5552 8.145767 CCATTCAATTGTTTGATATGTAGGCAT 58.854 33.333 5.13 0.00 41.38 4.40
5348 5553 7.490840 CCATTCAATTGTTTGATATGTAGGCA 58.509 34.615 5.13 0.00 41.38 4.75
5349 5554 6.421801 GCCATTCAATTGTTTGATATGTAGGC 59.578 38.462 5.13 0.00 41.38 3.93
5350 5555 6.925165 GGCCATTCAATTGTTTGATATGTAGG 59.075 38.462 5.13 0.00 41.38 3.18
5351 5556 7.719483 AGGCCATTCAATTGTTTGATATGTAG 58.281 34.615 5.01 0.00 41.38 2.74
5352 5557 7.658525 AGGCCATTCAATTGTTTGATATGTA 57.341 32.000 5.01 0.00 41.38 2.29
5353 5558 6.549433 AGGCCATTCAATTGTTTGATATGT 57.451 33.333 5.01 0.00 41.38 2.29
5354 5559 7.436080 GTGTAGGCCATTCAATTGTTTGATATG 59.564 37.037 5.01 1.90 41.38 1.78
5355 5560 7.123997 TGTGTAGGCCATTCAATTGTTTGATAT 59.876 33.333 5.01 0.00 41.38 1.63
5356 5561 6.435591 TGTGTAGGCCATTCAATTGTTTGATA 59.564 34.615 5.01 0.00 41.38 2.15
5357 5562 5.245751 TGTGTAGGCCATTCAATTGTTTGAT 59.754 36.000 5.01 0.00 41.38 2.57
5358 5563 4.586421 TGTGTAGGCCATTCAATTGTTTGA 59.414 37.500 5.01 0.00 40.09 2.69
5359 5564 4.685628 GTGTGTAGGCCATTCAATTGTTTG 59.314 41.667 5.01 4.54 0.00 2.93
5360 5565 4.588528 AGTGTGTAGGCCATTCAATTGTTT 59.411 37.500 5.01 0.00 0.00 2.83
5361 5566 4.151883 AGTGTGTAGGCCATTCAATTGTT 58.848 39.130 5.01 0.00 0.00 2.83
5362 5567 3.766545 AGTGTGTAGGCCATTCAATTGT 58.233 40.909 5.01 0.00 0.00 2.71
5363 5568 5.677091 GCTTAGTGTGTAGGCCATTCAATTG 60.677 44.000 5.01 0.00 0.00 2.32
5364 5569 4.399303 GCTTAGTGTGTAGGCCATTCAATT 59.601 41.667 5.01 0.00 0.00 2.32
5365 5570 3.947834 GCTTAGTGTGTAGGCCATTCAAT 59.052 43.478 5.01 0.16 0.00 2.57
5366 5571 3.343617 GCTTAGTGTGTAGGCCATTCAA 58.656 45.455 5.01 0.00 0.00 2.69
5367 5572 2.355716 GGCTTAGTGTGTAGGCCATTCA 60.356 50.000 5.01 0.00 42.08 2.57
5368 5573 2.289565 GGCTTAGTGTGTAGGCCATTC 58.710 52.381 5.01 0.00 42.08 2.67
5369 5574 1.633432 TGGCTTAGTGTGTAGGCCATT 59.367 47.619 5.01 0.00 46.35 3.16
5370 5575 1.285280 TGGCTTAGTGTGTAGGCCAT 58.715 50.000 5.01 0.00 46.35 4.40
5372 5577 2.420058 ATTGGCTTAGTGTGTAGGCC 57.580 50.000 0.00 0.00 42.73 5.19
5373 5578 4.332819 CACTTATTGGCTTAGTGTGTAGGC 59.667 45.833 0.00 0.00 35.65 3.93
5374 5579 4.332819 GCACTTATTGGCTTAGTGTGTAGG 59.667 45.833 0.00 0.00 40.99 3.18
5375 5580 4.935205 TGCACTTATTGGCTTAGTGTGTAG 59.065 41.667 0.00 0.00 40.99 2.74
5376 5581 4.900684 TGCACTTATTGGCTTAGTGTGTA 58.099 39.130 0.00 0.00 40.99 2.90
5377 5582 3.750371 TGCACTTATTGGCTTAGTGTGT 58.250 40.909 0.00 0.00 40.99 3.72
5378 5583 4.665212 CATGCACTTATTGGCTTAGTGTG 58.335 43.478 0.00 0.00 40.99 3.82
5379 5584 3.129287 GCATGCACTTATTGGCTTAGTGT 59.871 43.478 14.21 0.00 40.99 3.55
5380 5585 3.129113 TGCATGCACTTATTGGCTTAGTG 59.871 43.478 18.46 0.00 41.64 2.74
5381 5586 3.355378 TGCATGCACTTATTGGCTTAGT 58.645 40.909 18.46 0.00 0.00 2.24
5382 5587 4.374843 TTGCATGCACTTATTGGCTTAG 57.625 40.909 22.58 0.00 0.00 2.18
5383 5588 4.797800 TTTGCATGCACTTATTGGCTTA 57.202 36.364 22.58 0.00 0.00 3.09
5384 5589 3.681593 TTTGCATGCACTTATTGGCTT 57.318 38.095 22.58 0.00 0.00 4.35
5385 5590 3.899052 ATTTGCATGCACTTATTGGCT 57.101 38.095 22.58 0.00 0.00 4.75
5386 5591 3.486209 GCAATTTGCATGCACTTATTGGC 60.486 43.478 30.62 23.85 44.26 4.52
5387 5592 4.267357 GCAATTTGCATGCACTTATTGG 57.733 40.909 30.62 20.66 44.26 3.16
5408 5613 4.248842 TGTCACTGGCACCGGGTG 62.249 66.667 22.87 22.87 36.51 4.61
5409 5614 4.250305 GTGTCACTGGCACCGGGT 62.250 66.667 6.32 0.00 0.00 5.28
5414 5619 2.781595 CTACCCGGTGTCACTGGCAC 62.782 65.000 23.63 5.11 43.40 5.01
5415 5620 2.524640 TACCCGGTGTCACTGGCA 60.525 61.111 23.63 11.61 43.40 4.92
5416 5621 2.264794 CTACCCGGTGTCACTGGC 59.735 66.667 23.63 0.00 43.40 4.85
5417 5622 0.968901 TAGCTACCCGGTGTCACTGG 60.969 60.000 22.31 22.31 44.36 4.00
5418 5623 1.112113 ATAGCTACCCGGTGTCACTG 58.888 55.000 4.68 4.68 0.00 3.66
5419 5624 2.305009 GTATAGCTACCCGGTGTCACT 58.695 52.381 0.00 2.18 0.00 3.41
5420 5625 1.002033 CGTATAGCTACCCGGTGTCAC 60.002 57.143 0.00 0.00 0.00 3.67
5421 5626 1.311859 CGTATAGCTACCCGGTGTCA 58.688 55.000 0.00 0.00 0.00 3.58
5422 5627 1.312815 ACGTATAGCTACCCGGTGTC 58.687 55.000 15.79 0.00 0.00 3.67
5423 5628 2.498167 CTACGTATAGCTACCCGGTGT 58.502 52.381 15.79 0.00 0.00 4.16
5471 5676 5.896963 TGCTAGAGATCCTCCTGATAATCA 58.103 41.667 0.00 0.00 32.41 2.57
5473 5678 5.951747 GTCTGCTAGAGATCCTCCTGATAAT 59.048 44.000 0.00 0.00 32.41 1.28
5523 5728 1.448540 CCATCGACCAGACCACTGC 60.449 63.158 0.00 0.00 42.25 4.40
5524 5729 1.448540 GCCATCGACCAGACCACTG 60.449 63.158 0.00 0.00 43.12 3.66
5525 5730 2.660064 GGCCATCGACCAGACCACT 61.660 63.158 0.00 0.00 0.00 4.00
5526 5731 2.125106 GGCCATCGACCAGACCAC 60.125 66.667 0.00 0.00 0.00 4.16
5527 5732 3.770040 CGGCCATCGACCAGACCA 61.770 66.667 2.24 0.00 42.43 4.02
5529 5734 0.108520 TAAACGGCCATCGACCAGAC 60.109 55.000 2.24 0.00 42.43 3.51
5530 5735 0.609151 TTAAACGGCCATCGACCAGA 59.391 50.000 2.24 0.00 42.43 3.86
5531 5736 1.006832 CTTAAACGGCCATCGACCAG 58.993 55.000 2.24 0.00 42.43 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.