Multiple sequence alignment - TraesCS4D01G321700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G321700 chr4D 100.000 2374 0 0 1 2374 484267500 484269873 0.000000e+00 4385.0
1 TraesCS4D01G321700 chr4D 100.000 159 0 0 816 974 98584650 98584808 6.420000e-76 294.0
2 TraesCS4D01G321700 chr4B 93.300 1418 70 14 974 2374 615772847 615774256 0.000000e+00 2069.0
3 TraesCS4D01G321700 chr4B 94.915 295 9 4 523 815 615772564 615772854 7.730000e-125 457.0
4 TraesCS4D01G321700 chr4B 91.667 276 20 2 1 276 615772230 615772502 1.720000e-101 379.0
5 TraesCS4D01G321700 chr4B 100.000 30 0 0 497 526 615772518 615772547 3.300000e-04 56.5
6 TraesCS4D01G321700 chr5A 91.258 1407 66 34 999 2374 664532366 664533746 0.000000e+00 1864.0
7 TraesCS4D01G321700 chr5A 98.742 159 2 0 815 973 68623434 68623592 1.390000e-72 283.0
8 TraesCS4D01G321700 chr6A 100.000 158 0 0 816 973 609726415 609726258 2.310000e-75 292.0
9 TraesCS4D01G321700 chr6A 96.471 170 6 0 810 979 590101574 590101405 5.000000e-72 281.0
10 TraesCS4D01G321700 chr7A 99.371 159 1 0 815 973 118439832 118439990 2.990000e-74 289.0
11 TraesCS4D01G321700 chr7A 99.367 158 1 0 816 973 579231459 579231302 1.070000e-73 287.0
12 TraesCS4D01G321700 chr7A 85.526 76 7 4 204 277 474729056 474728983 2.530000e-10 76.8
13 TraesCS4D01G321700 chr3A 99.367 158 1 0 816 973 46840118 46839961 1.070000e-73 287.0
14 TraesCS4D01G321700 chr3A 98.750 160 2 0 814 973 392776253 392776412 3.860000e-73 285.0
15 TraesCS4D01G321700 chr5B 98.750 160 2 0 815 974 455378778 455378937 3.860000e-73 285.0
16 TraesCS4D01G321700 chr5D 83.117 77 11 2 204 279 301108821 301108896 4.230000e-08 69.4
17 TraesCS4D01G321700 chr3B 87.755 49 6 0 93 141 733330213 733330261 9.170000e-05 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G321700 chr4D 484267500 484269873 2373 False 4385.000 4385 100.0000 1 2374 1 chr4D.!!$F2 2373
1 TraesCS4D01G321700 chr4B 615772230 615774256 2026 False 740.375 2069 94.9705 1 2374 4 chr4B.!!$F1 2373
2 TraesCS4D01G321700 chr5A 664532366 664533746 1380 False 1864.000 1864 91.2580 999 2374 1 chr5A.!!$F2 1375

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
457 458 0.03392 GGTTTTGGTACTCGGACGGT 59.966 55.0 0.0 0.0 0.0 4.83 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1401 1443 0.836606 TGAAGCAACAGACACAGGGA 59.163 50.0 0.0 0.0 0.0 4.2 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
68 69 3.066190 TGTACGAGTGGGAGCCGG 61.066 66.667 0.00 0.00 0.00 6.13
69 70 4.509737 GTACGAGTGGGAGCCGGC 62.510 72.222 21.89 21.89 0.00 6.13
94 95 1.666888 GCGAGTCCGAAACTTAACCGA 60.667 52.381 0.00 0.00 38.74 4.69
135 136 4.862823 GGGGAGGTCGAGGGGAGG 62.863 77.778 0.00 0.00 0.00 4.30
143 144 3.537874 CGAGGGGAGGGCGGTTAG 61.538 72.222 0.00 0.00 0.00 2.34
181 182 1.104630 GAAGGAGGAGGAATCGTCGT 58.895 55.000 0.00 0.00 0.00 4.34
182 183 0.818296 AAGGAGGAGGAATCGTCGTG 59.182 55.000 2.77 0.00 0.00 4.35
192 193 1.038130 AATCGTCGTGGGAGAGGAGG 61.038 60.000 0.00 0.00 38.25 4.30
203 204 1.828595 GGAGAGGAGGAAGAAGGTGTC 59.171 57.143 0.00 0.00 0.00 3.67
206 207 0.905337 AGGAGGAAGAAGGTGTCGGG 60.905 60.000 0.00 0.00 0.00 5.14
208 209 1.900545 GAGGAAGAAGGTGTCGGGGG 61.901 65.000 0.00 0.00 0.00 5.40
218 219 0.676782 GTGTCGGGGGAACAAGATGG 60.677 60.000 0.00 0.00 0.00 3.51
227 228 2.749621 GGGAACAAGATGGACATGTGAC 59.250 50.000 1.15 0.00 30.63 3.67
229 230 2.099141 ACAAGATGGACATGTGACGG 57.901 50.000 1.15 0.00 0.00 4.79
231 232 0.324614 AAGATGGACATGTGACGGCA 59.675 50.000 1.15 0.00 0.00 5.69
240 241 0.541392 ATGTGACGGCATGCTCCTAA 59.459 50.000 18.92 0.00 0.00 2.69
269 270 5.898397 TGGATATTGATCTGATGGCCAAAAA 59.102 36.000 10.96 0.00 32.15 1.94
276 277 8.537728 TTGATCTGATGGCCAAAAATATAAGT 57.462 30.769 10.96 0.00 0.00 2.24
279 280 7.953005 TCTGATGGCCAAAAATATAAGTGAA 57.047 32.000 10.96 0.00 0.00 3.18
281 282 7.833682 TCTGATGGCCAAAAATATAAGTGAAGA 59.166 33.333 10.96 0.00 0.00 2.87
282 283 8.359875 TGATGGCCAAAAATATAAGTGAAGAA 57.640 30.769 10.96 0.00 0.00 2.52
283 284 8.469200 TGATGGCCAAAAATATAAGTGAAGAAG 58.531 33.333 10.96 0.00 0.00 2.85
284 285 7.775053 TGGCCAAAAATATAAGTGAAGAAGT 57.225 32.000 0.61 0.00 0.00 3.01
285 286 8.189119 TGGCCAAAAATATAAGTGAAGAAGTT 57.811 30.769 0.61 0.00 0.00 2.66
286 287 8.646900 TGGCCAAAAATATAAGTGAAGAAGTTT 58.353 29.630 0.61 0.00 0.00 2.66
287 288 9.489084 GGCCAAAAATATAAGTGAAGAAGTTTT 57.511 29.630 0.00 0.00 0.00 2.43
298 299 8.974060 AAGTGAAGAAGTTTTTGTGGTATAGA 57.026 30.769 0.00 0.00 0.00 1.98
299 300 9.574516 AAGTGAAGAAGTTTTTGTGGTATAGAT 57.425 29.630 0.00 0.00 0.00 1.98
302 303 9.162764 TGAAGAAGTTTTTGTGGTATAGATAGC 57.837 33.333 0.00 0.00 0.00 2.97
303 304 8.507524 AAGAAGTTTTTGTGGTATAGATAGCC 57.492 34.615 0.00 0.00 0.00 3.93
304 305 7.862675 AGAAGTTTTTGTGGTATAGATAGCCT 58.137 34.615 0.00 0.00 0.00 4.58
305 306 7.988028 AGAAGTTTTTGTGGTATAGATAGCCTC 59.012 37.037 0.00 0.00 0.00 4.70
306 307 7.439108 AGTTTTTGTGGTATAGATAGCCTCT 57.561 36.000 0.00 0.00 38.06 3.69
307 308 8.548880 AGTTTTTGTGGTATAGATAGCCTCTA 57.451 34.615 0.00 0.00 40.73 2.43
308 309 8.989131 AGTTTTTGTGGTATAGATAGCCTCTAA 58.011 33.333 0.00 0.00 39.88 2.10
309 310 9.780186 GTTTTTGTGGTATAGATAGCCTCTAAT 57.220 33.333 0.00 0.00 39.88 1.73
331 332 9.912634 CTAATTTATTTATCATCATTTGCCCGT 57.087 29.630 0.00 0.00 0.00 5.28
333 334 9.912634 AATTTATTTATCATCATTTGCCCGTAG 57.087 29.630 0.00 0.00 0.00 3.51
334 335 4.829064 TTTATCATCATTTGCCCGTAGC 57.171 40.909 0.00 0.00 44.14 3.58
343 344 2.124736 GCCCGTAGCAAGCATGGA 60.125 61.111 0.00 0.00 42.97 3.41
344 345 2.472909 GCCCGTAGCAAGCATGGAC 61.473 63.158 0.00 0.00 42.97 4.02
345 346 1.221840 CCCGTAGCAAGCATGGACT 59.778 57.895 0.00 0.00 0.00 3.85
346 347 1.091771 CCCGTAGCAAGCATGGACTG 61.092 60.000 0.00 0.00 0.00 3.51
347 348 1.091771 CCGTAGCAAGCATGGACTGG 61.092 60.000 0.00 0.00 0.00 4.00
348 349 0.391661 CGTAGCAAGCATGGACTGGT 60.392 55.000 0.00 0.00 37.10 4.00
349 350 1.826385 GTAGCAAGCATGGACTGGTT 58.174 50.000 0.00 0.00 46.25 3.67
350 351 1.740025 GTAGCAAGCATGGACTGGTTC 59.260 52.381 0.00 0.00 43.56 3.62
351 352 0.111061 AGCAAGCATGGACTGGTTCA 59.889 50.000 0.00 0.00 43.56 3.18
352 353 0.524862 GCAAGCATGGACTGGTTCAG 59.475 55.000 0.00 0.00 43.56 3.02
353 354 1.883638 GCAAGCATGGACTGGTTCAGA 60.884 52.381 1.59 0.00 43.56 3.27
354 355 1.808945 CAAGCATGGACTGGTTCAGAC 59.191 52.381 1.59 0.00 43.56 3.51
355 356 1.059098 AGCATGGACTGGTTCAGACA 58.941 50.000 1.59 1.45 35.18 3.41
356 357 1.002888 AGCATGGACTGGTTCAGACAG 59.997 52.381 1.59 0.00 41.64 3.51
362 363 2.821991 ACTGGTTCAGACAGTAGCAC 57.178 50.000 1.59 0.00 46.62 4.40
363 364 2.320781 ACTGGTTCAGACAGTAGCACT 58.679 47.619 1.59 0.00 46.62 4.40
364 365 2.036475 ACTGGTTCAGACAGTAGCACTG 59.964 50.000 12.81 12.81 46.62 3.66
365 366 4.255695 ACTGGTTCAGACAGTAGCACTGA 61.256 47.826 19.01 0.00 46.62 3.41
366 367 5.716466 ACTGGTTCAGACAGTAGCACTGAA 61.716 45.833 19.01 0.00 46.62 3.02
375 376 3.662247 AGTAGCACTGAACTTTACGCT 57.338 42.857 0.00 0.00 0.00 5.07
376 377 4.778534 AGTAGCACTGAACTTTACGCTA 57.221 40.909 0.00 0.00 0.00 4.26
377 378 4.819700 GTAGCACTGAACTTTACGCTAC 57.180 45.455 0.00 0.00 43.34 3.58
378 379 3.662247 AGCACTGAACTTTACGCTACT 57.338 42.857 0.00 0.00 0.00 2.57
379 380 3.576648 AGCACTGAACTTTACGCTACTC 58.423 45.455 0.00 0.00 0.00 2.59
380 381 3.005472 AGCACTGAACTTTACGCTACTCA 59.995 43.478 0.00 0.00 0.00 3.41
381 382 3.927142 GCACTGAACTTTACGCTACTCAT 59.073 43.478 0.00 0.00 0.00 2.90
382 383 4.389077 GCACTGAACTTTACGCTACTCATT 59.611 41.667 0.00 0.00 0.00 2.57
383 384 5.575606 GCACTGAACTTTACGCTACTCATTA 59.424 40.000 0.00 0.00 0.00 1.90
384 385 6.255887 GCACTGAACTTTACGCTACTCATTAT 59.744 38.462 0.00 0.00 0.00 1.28
385 386 7.613146 CACTGAACTTTACGCTACTCATTATG 58.387 38.462 0.00 0.00 0.00 1.90
386 387 7.488150 CACTGAACTTTACGCTACTCATTATGA 59.512 37.037 0.00 0.00 0.00 2.15
402 403 6.479006 TCATTATGAGATGGATCCACATTCC 58.521 40.000 18.99 5.57 0.00 3.01
403 404 5.910355 TTATGAGATGGATCCACATTCCA 57.090 39.130 18.99 11.26 46.86 3.53
408 409 2.549064 TGGATCCACATTCCATAGCG 57.451 50.000 11.44 0.00 38.35 4.26
409 410 2.046292 TGGATCCACATTCCATAGCGA 58.954 47.619 11.44 0.00 38.35 4.93
410 411 2.639347 TGGATCCACATTCCATAGCGAT 59.361 45.455 11.44 0.00 38.35 4.58
411 412 3.265791 GGATCCACATTCCATAGCGATC 58.734 50.000 6.95 0.00 33.21 3.69
412 413 3.306989 GGATCCACATTCCATAGCGATCA 60.307 47.826 6.95 0.00 33.21 2.92
413 414 3.391506 TCCACATTCCATAGCGATCAG 57.608 47.619 0.00 0.00 0.00 2.90
414 415 2.700371 TCCACATTCCATAGCGATCAGT 59.300 45.455 0.00 0.00 0.00 3.41
415 416 2.804527 CCACATTCCATAGCGATCAGTG 59.195 50.000 0.00 0.00 0.00 3.66
416 417 2.222678 CACATTCCATAGCGATCAGTGC 59.777 50.000 0.00 0.00 0.00 4.40
417 418 2.158914 ACATTCCATAGCGATCAGTGCA 60.159 45.455 0.00 0.00 33.85 4.57
418 419 2.916702 TTCCATAGCGATCAGTGCAT 57.083 45.000 0.00 0.00 33.85 3.96
419 420 2.916702 TCCATAGCGATCAGTGCATT 57.083 45.000 0.00 0.00 33.85 3.56
420 421 3.198409 TCCATAGCGATCAGTGCATTT 57.802 42.857 0.00 0.00 33.85 2.32
421 422 2.874086 TCCATAGCGATCAGTGCATTTG 59.126 45.455 0.00 0.00 33.85 2.32
422 423 2.615447 CCATAGCGATCAGTGCATTTGT 59.385 45.455 0.00 0.00 33.85 2.83
423 424 3.303593 CCATAGCGATCAGTGCATTTGTC 60.304 47.826 0.00 0.00 33.85 3.18
424 425 2.105006 AGCGATCAGTGCATTTGTCT 57.895 45.000 0.00 0.00 33.85 3.41
425 426 2.005451 AGCGATCAGTGCATTTGTCTC 58.995 47.619 0.00 0.00 33.85 3.36
426 427 2.005451 GCGATCAGTGCATTTGTCTCT 58.995 47.619 0.00 0.00 0.00 3.10
427 428 2.222976 GCGATCAGTGCATTTGTCTCTG 60.223 50.000 0.00 0.00 0.00 3.35
428 429 3.256558 CGATCAGTGCATTTGTCTCTGA 58.743 45.455 3.71 3.71 39.05 3.27
429 430 3.681417 CGATCAGTGCATTTGTCTCTGAA 59.319 43.478 5.19 0.00 38.38 3.02
430 431 4.201695 CGATCAGTGCATTTGTCTCTGAAG 60.202 45.833 5.19 0.46 38.38 3.02
431 432 2.810274 TCAGTGCATTTGTCTCTGAAGC 59.190 45.455 0.00 0.00 33.18 3.86
432 433 2.095364 CAGTGCATTTGTCTCTGAAGCC 60.095 50.000 0.00 0.00 0.00 4.35
433 434 2.157738 GTGCATTTGTCTCTGAAGCCT 58.842 47.619 0.00 0.00 0.00 4.58
434 435 2.095364 GTGCATTTGTCTCTGAAGCCTG 60.095 50.000 0.00 0.00 0.00 4.85
435 436 1.135460 GCATTTGTCTCTGAAGCCTGC 60.135 52.381 0.00 0.00 0.00 4.85
436 437 2.156917 CATTTGTCTCTGAAGCCTGCA 58.843 47.619 0.00 0.00 0.00 4.41
437 438 2.346766 TTTGTCTCTGAAGCCTGCAA 57.653 45.000 0.00 0.00 0.00 4.08
438 439 1.888215 TTGTCTCTGAAGCCTGCAAG 58.112 50.000 0.00 0.00 0.00 4.01
451 452 2.969443 CTGCAAGGTTTTGGTACTCG 57.031 50.000 0.00 0.00 34.79 4.18
452 453 1.535462 CTGCAAGGTTTTGGTACTCGG 59.465 52.381 0.00 0.00 34.79 4.63
453 454 1.141254 TGCAAGGTTTTGGTACTCGGA 59.859 47.619 0.00 0.00 34.79 4.55
454 455 1.534163 GCAAGGTTTTGGTACTCGGAC 59.466 52.381 0.00 0.00 34.79 4.79
455 456 1.796459 CAAGGTTTTGGTACTCGGACG 59.204 52.381 0.00 0.00 0.00 4.79
456 457 0.319405 AGGTTTTGGTACTCGGACGG 59.681 55.000 0.00 0.00 0.00 4.79
457 458 0.033920 GGTTTTGGTACTCGGACGGT 59.966 55.000 0.00 0.00 0.00 4.83
458 459 1.142474 GTTTTGGTACTCGGACGGTG 58.858 55.000 0.00 0.00 0.00 4.94
459 460 0.600782 TTTTGGTACTCGGACGGTGC 60.601 55.000 0.00 0.00 0.00 5.01
460 461 2.752322 TTTGGTACTCGGACGGTGCG 62.752 60.000 16.26 16.26 0.00 5.34
461 462 3.741476 GGTACTCGGACGGTGCGT 61.741 66.667 21.15 6.18 45.10 5.24
476 477 3.530104 CGTCGCGGCGTCAGTTAC 61.530 66.667 27.25 10.80 0.00 2.50
477 478 2.429571 GTCGCGGCGTCAGTTACA 60.430 61.111 22.90 0.00 0.00 2.41
478 479 1.804326 GTCGCGGCGTCAGTTACAT 60.804 57.895 22.90 0.00 0.00 2.29
479 480 1.803922 TCGCGGCGTCAGTTACATG 60.804 57.895 22.90 0.00 0.00 3.21
480 481 2.399611 GCGGCGTCAGTTACATGC 59.600 61.111 9.37 0.00 0.00 4.06
481 482 2.695055 CGGCGTCAGTTACATGCG 59.305 61.111 0.00 0.00 0.00 4.73
482 483 2.399611 GGCGTCAGTTACATGCGC 59.600 61.111 0.00 0.00 41.62 6.09
483 484 2.399611 GCGTCAGTTACATGCGCC 59.600 61.111 4.18 0.00 38.72 6.53
484 485 2.695055 CGTCAGTTACATGCGCCG 59.305 61.111 4.18 0.00 0.00 6.46
485 486 2.092291 CGTCAGTTACATGCGCCGT 61.092 57.895 4.18 4.59 0.00 5.68
486 487 0.799152 CGTCAGTTACATGCGCCGTA 60.799 55.000 4.18 3.39 0.00 4.02
487 488 0.643820 GTCAGTTACATGCGCCGTAC 59.356 55.000 4.18 2.16 0.00 3.67
489 490 1.074319 CAGTTACATGCGCCGTACGT 61.074 55.000 15.21 0.00 46.11 3.57
490 491 0.451383 AGTTACATGCGCCGTACGTA 59.549 50.000 15.21 0.00 46.11 3.57
491 492 0.567509 GTTACATGCGCCGTACGTAC 59.432 55.000 15.90 15.90 46.11 3.67
542 563 1.745489 GCATGGACCTGACGGGAAC 60.745 63.158 7.51 0.00 38.76 3.62
585 606 0.317938 GTGCTATCGGGACTGCTACG 60.318 60.000 0.00 0.00 33.31 3.51
589 610 2.486982 GCTATCGGGACTGCTACGATAA 59.513 50.000 7.32 0.00 45.45 1.75
738 760 1.006832 CTTAAACGGCCATCGACCAG 58.993 55.000 2.24 0.00 42.43 4.00
739 761 0.609151 TTAAACGGCCATCGACCAGA 59.391 50.000 2.24 0.00 42.43 3.86
740 762 0.108520 TAAACGGCCATCGACCAGAC 60.109 55.000 2.24 0.00 42.43 3.51
741 763 2.798148 AAACGGCCATCGACCAGACC 62.798 60.000 2.24 0.00 42.43 3.85
742 764 3.770040 CGGCCATCGACCAGACCA 61.770 66.667 2.24 0.00 42.43 4.02
743 765 2.125106 GGCCATCGACCAGACCAC 60.125 66.667 0.00 0.00 0.00 4.16
744 766 2.660064 GGCCATCGACCAGACCACT 61.660 63.158 0.00 0.00 0.00 4.00
745 767 1.448540 GCCATCGACCAGACCACTG 60.449 63.158 0.00 0.00 43.12 3.66
746 768 1.448540 CCATCGACCAGACCACTGC 60.449 63.158 0.00 0.00 42.25 4.40
796 818 5.951747 GTCTGCTAGAGATCCTCCTGATAAT 59.048 44.000 0.00 0.00 32.41 1.28
798 820 5.896963 TGCTAGAGATCCTCCTGATAATCA 58.103 41.667 0.00 0.00 32.41 2.57
846 868 2.498167 CTACGTATAGCTACCCGGTGT 58.502 52.381 15.79 0.00 0.00 4.16
847 869 1.312815 ACGTATAGCTACCCGGTGTC 58.687 55.000 15.79 0.00 0.00 3.67
848 870 1.311859 CGTATAGCTACCCGGTGTCA 58.688 55.000 0.00 0.00 0.00 3.58
849 871 1.002033 CGTATAGCTACCCGGTGTCAC 60.002 57.143 0.00 0.00 0.00 3.67
850 872 2.305009 GTATAGCTACCCGGTGTCACT 58.695 52.381 0.00 2.18 0.00 3.41
851 873 1.112113 ATAGCTACCCGGTGTCACTG 58.888 55.000 4.68 4.68 0.00 3.66
852 874 0.968901 TAGCTACCCGGTGTCACTGG 60.969 60.000 22.31 22.31 44.36 4.00
853 875 2.264794 CTACCCGGTGTCACTGGC 59.735 66.667 23.63 0.00 43.40 4.85
854 876 2.524640 TACCCGGTGTCACTGGCA 60.525 61.111 23.63 11.61 43.40 4.92
855 877 2.781595 CTACCCGGTGTCACTGGCAC 62.782 65.000 23.63 5.11 43.40 5.01
860 882 4.250305 GTGTCACTGGCACCGGGT 62.250 66.667 6.32 0.00 0.00 5.28
861 883 4.248842 TGTCACTGGCACCGGGTG 62.249 66.667 22.87 22.87 36.51 4.61
882 904 4.267357 GCAATTTGCATGCACTTATTGG 57.733 40.909 30.62 20.66 44.26 3.16
883 905 3.486209 GCAATTTGCATGCACTTATTGGC 60.486 43.478 30.62 23.85 44.26 4.52
884 906 3.899052 ATTTGCATGCACTTATTGGCT 57.101 38.095 22.58 0.00 0.00 4.75
885 907 3.681593 TTTGCATGCACTTATTGGCTT 57.318 38.095 22.58 0.00 0.00 4.35
886 908 4.797800 TTTGCATGCACTTATTGGCTTA 57.202 36.364 22.58 0.00 0.00 3.09
887 909 4.374843 TTGCATGCACTTATTGGCTTAG 57.625 40.909 22.58 0.00 0.00 2.18
888 910 3.355378 TGCATGCACTTATTGGCTTAGT 58.645 40.909 18.46 0.00 0.00 2.24
889 911 3.129113 TGCATGCACTTATTGGCTTAGTG 59.871 43.478 18.46 0.00 41.64 2.74
890 912 3.129287 GCATGCACTTATTGGCTTAGTGT 59.871 43.478 14.21 0.00 40.99 3.55
891 913 4.665212 CATGCACTTATTGGCTTAGTGTG 58.335 43.478 0.00 0.00 40.99 3.82
892 914 3.750371 TGCACTTATTGGCTTAGTGTGT 58.250 40.909 0.00 0.00 40.99 3.72
893 915 4.900684 TGCACTTATTGGCTTAGTGTGTA 58.099 39.130 0.00 0.00 40.99 2.90
894 916 4.935205 TGCACTTATTGGCTTAGTGTGTAG 59.065 41.667 0.00 0.00 40.99 2.74
895 917 4.332819 GCACTTATTGGCTTAGTGTGTAGG 59.667 45.833 0.00 0.00 40.99 3.18
896 918 4.332819 CACTTATTGGCTTAGTGTGTAGGC 59.667 45.833 0.00 0.00 35.65 3.93
897 919 2.420058 ATTGGCTTAGTGTGTAGGCC 57.580 50.000 0.00 0.00 42.73 5.19
899 921 1.285280 TGGCTTAGTGTGTAGGCCAT 58.715 50.000 5.01 0.00 46.35 4.40
900 922 1.633432 TGGCTTAGTGTGTAGGCCATT 59.367 47.619 5.01 0.00 46.35 3.16
901 923 2.289565 GGCTTAGTGTGTAGGCCATTC 58.710 52.381 5.01 0.00 42.08 2.67
902 924 2.355716 GGCTTAGTGTGTAGGCCATTCA 60.356 50.000 5.01 0.00 42.08 2.57
903 925 3.343617 GCTTAGTGTGTAGGCCATTCAA 58.656 45.455 5.01 0.00 0.00 2.69
904 926 3.947834 GCTTAGTGTGTAGGCCATTCAAT 59.052 43.478 5.01 0.16 0.00 2.57
905 927 4.399303 GCTTAGTGTGTAGGCCATTCAATT 59.601 41.667 5.01 0.00 0.00 2.32
906 928 5.677091 GCTTAGTGTGTAGGCCATTCAATTG 60.677 44.000 5.01 0.00 0.00 2.32
907 929 3.766545 AGTGTGTAGGCCATTCAATTGT 58.233 40.909 5.01 0.00 0.00 2.71
908 930 4.151883 AGTGTGTAGGCCATTCAATTGTT 58.848 39.130 5.01 0.00 0.00 2.83
909 931 4.588528 AGTGTGTAGGCCATTCAATTGTTT 59.411 37.500 5.01 0.00 0.00 2.83
910 932 4.685628 GTGTGTAGGCCATTCAATTGTTTG 59.314 41.667 5.01 4.54 0.00 2.93
911 933 4.586421 TGTGTAGGCCATTCAATTGTTTGA 59.414 37.500 5.01 0.00 40.09 2.69
912 934 5.245751 TGTGTAGGCCATTCAATTGTTTGAT 59.754 36.000 5.01 0.00 41.38 2.57
913 935 6.435591 TGTGTAGGCCATTCAATTGTTTGATA 59.564 34.615 5.01 0.00 41.38 2.15
914 936 7.123997 TGTGTAGGCCATTCAATTGTTTGATAT 59.876 33.333 5.01 0.00 41.38 1.63
915 937 7.436080 GTGTAGGCCATTCAATTGTTTGATATG 59.564 37.037 5.01 1.90 41.38 1.78
916 938 6.549433 AGGCCATTCAATTGTTTGATATGT 57.451 33.333 5.01 0.00 41.38 2.29
917 939 7.658525 AGGCCATTCAATTGTTTGATATGTA 57.341 32.000 5.01 0.00 41.38 2.29
918 940 7.719483 AGGCCATTCAATTGTTTGATATGTAG 58.281 34.615 5.01 0.00 41.38 2.74
919 941 6.925165 GGCCATTCAATTGTTTGATATGTAGG 59.075 38.462 5.13 0.00 41.38 3.18
920 942 6.421801 GCCATTCAATTGTTTGATATGTAGGC 59.578 38.462 5.13 0.00 41.38 3.93
921 943 7.490840 CCATTCAATTGTTTGATATGTAGGCA 58.509 34.615 5.13 0.00 41.38 4.75
922 944 8.145767 CCATTCAATTGTTTGATATGTAGGCAT 58.854 33.333 5.13 0.00 41.38 4.40
923 945 8.974408 CATTCAATTGTTTGATATGTAGGCATG 58.026 33.333 5.13 0.00 41.38 4.06
924 946 7.643569 TCAATTGTTTGATATGTAGGCATGT 57.356 32.000 5.13 0.00 36.94 3.21
925 947 7.482474 TCAATTGTTTGATATGTAGGCATGTG 58.518 34.615 5.13 0.00 36.94 3.21
926 948 7.122501 TCAATTGTTTGATATGTAGGCATGTGT 59.877 33.333 5.13 0.00 36.94 3.72
927 949 6.832520 TTGTTTGATATGTAGGCATGTGTT 57.167 33.333 0.00 0.00 36.58 3.32
928 950 6.435430 TGTTTGATATGTAGGCATGTGTTC 57.565 37.500 0.00 0.00 36.58 3.18
929 951 6.179756 TGTTTGATATGTAGGCATGTGTTCT 58.820 36.000 0.00 0.00 36.58 3.01
930 952 6.658816 TGTTTGATATGTAGGCATGTGTTCTT 59.341 34.615 0.00 0.00 36.58 2.52
931 953 6.925610 TTGATATGTAGGCATGTGTTCTTC 57.074 37.500 0.00 0.00 36.58 2.87
932 954 6.239217 TGATATGTAGGCATGTGTTCTTCT 57.761 37.500 0.00 0.00 36.58 2.85
933 955 7.360113 TGATATGTAGGCATGTGTTCTTCTA 57.640 36.000 0.00 0.00 36.58 2.10
934 956 7.966812 TGATATGTAGGCATGTGTTCTTCTAT 58.033 34.615 0.00 0.00 36.58 1.98
935 957 9.088987 TGATATGTAGGCATGTGTTCTTCTATA 57.911 33.333 0.00 0.00 36.58 1.31
937 959 9.881649 ATATGTAGGCATGTGTTCTTCTATATG 57.118 33.333 0.00 0.00 36.58 1.78
938 960 6.524734 TGTAGGCATGTGTTCTTCTATATGG 58.475 40.000 0.00 0.00 0.00 2.74
939 961 5.894298 AGGCATGTGTTCTTCTATATGGA 57.106 39.130 0.00 0.00 0.00 3.41
940 962 5.615289 AGGCATGTGTTCTTCTATATGGAC 58.385 41.667 0.00 0.00 0.00 4.02
941 963 5.130975 AGGCATGTGTTCTTCTATATGGACA 59.869 40.000 0.00 0.00 0.00 4.02
942 964 5.237344 GGCATGTGTTCTTCTATATGGACAC 59.763 44.000 0.00 0.00 0.00 3.67
943 965 5.237344 GCATGTGTTCTTCTATATGGACACC 59.763 44.000 6.39 0.00 0.00 4.16
944 966 5.006153 TGTGTTCTTCTATATGGACACCG 57.994 43.478 6.39 0.00 0.00 4.94
945 967 4.142026 TGTGTTCTTCTATATGGACACCGG 60.142 45.833 0.00 0.00 0.00 5.28
946 968 3.386726 TGTTCTTCTATATGGACACCGGG 59.613 47.826 6.32 0.00 0.00 5.73
947 969 3.323774 TCTTCTATATGGACACCGGGT 57.676 47.619 6.32 0.00 0.00 5.28
948 970 4.458256 TCTTCTATATGGACACCGGGTA 57.542 45.455 6.32 0.00 0.00 3.69
949 971 4.806892 TCTTCTATATGGACACCGGGTAA 58.193 43.478 6.32 0.00 0.00 2.85
950 972 5.399991 TCTTCTATATGGACACCGGGTAAT 58.600 41.667 6.32 1.53 0.00 1.89
951 973 5.842328 TCTTCTATATGGACACCGGGTAATT 59.158 40.000 6.32 0.00 0.00 1.40
952 974 6.328148 TCTTCTATATGGACACCGGGTAATTT 59.672 38.462 6.32 0.00 0.00 1.82
953 975 6.503560 TCTATATGGACACCGGGTAATTTT 57.496 37.500 6.32 0.00 0.00 1.82
954 976 7.615039 TCTATATGGACACCGGGTAATTTTA 57.385 36.000 6.32 0.00 0.00 1.52
955 977 8.032045 TCTATATGGACACCGGGTAATTTTAA 57.968 34.615 6.32 0.00 0.00 1.52
956 978 8.152246 TCTATATGGACACCGGGTAATTTTAAG 58.848 37.037 6.32 0.00 0.00 1.85
957 979 4.370094 TGGACACCGGGTAATTTTAAGT 57.630 40.909 6.32 0.00 0.00 2.24
958 980 4.325972 TGGACACCGGGTAATTTTAAGTC 58.674 43.478 6.32 0.04 0.00 3.01
959 981 4.041938 TGGACACCGGGTAATTTTAAGTCT 59.958 41.667 6.32 0.00 0.00 3.24
960 982 4.393990 GGACACCGGGTAATTTTAAGTCTG 59.606 45.833 6.32 0.00 0.00 3.51
961 983 4.329392 ACACCGGGTAATTTTAAGTCTGG 58.671 43.478 6.32 0.00 0.00 3.86
962 984 4.041938 ACACCGGGTAATTTTAAGTCTGGA 59.958 41.667 6.32 0.00 0.00 3.86
963 985 5.190677 CACCGGGTAATTTTAAGTCTGGAT 58.809 41.667 6.32 0.00 0.00 3.41
964 986 5.296035 CACCGGGTAATTTTAAGTCTGGATC 59.704 44.000 6.32 0.00 0.00 3.36
965 987 4.820173 CCGGGTAATTTTAAGTCTGGATCC 59.180 45.833 4.20 4.20 0.00 3.36
966 988 4.510340 CGGGTAATTTTAAGTCTGGATCCG 59.490 45.833 7.39 2.06 0.00 4.18
967 989 4.275196 GGGTAATTTTAAGTCTGGATCCGC 59.725 45.833 7.39 0.00 0.00 5.54
968 990 4.275196 GGTAATTTTAAGTCTGGATCCGCC 59.725 45.833 7.39 0.00 37.10 6.13
969 991 2.413310 TTTTAAGTCTGGATCCGCCC 57.587 50.000 7.39 0.00 34.97 6.13
970 992 0.544697 TTTAAGTCTGGATCCGCCCC 59.455 55.000 7.39 0.00 34.97 5.80
971 993 0.326238 TTAAGTCTGGATCCGCCCCT 60.326 55.000 7.39 0.00 34.97 4.79
972 994 1.048724 TAAGTCTGGATCCGCCCCTG 61.049 60.000 7.39 0.00 34.97 4.45
973 995 4.554036 GTCTGGATCCGCCCCTGC 62.554 72.222 7.39 0.00 34.97 4.85
974 996 4.804420 TCTGGATCCGCCCCTGCT 62.804 66.667 7.39 0.00 34.97 4.24
975 997 4.247380 CTGGATCCGCCCCTGCTC 62.247 72.222 7.39 0.00 34.97 4.26
978 1000 4.593864 GATCCGCCCCTGCTCGTC 62.594 72.222 0.00 0.00 34.43 4.20
1077 1104 4.436998 CACGGTGGCCTCGTCCTC 62.437 72.222 19.00 0.00 38.94 3.71
1131 1168 2.614983 GACGTGGTGTTCCTTTTGCTAA 59.385 45.455 0.00 0.00 34.23 3.09
1140 1177 6.460953 GGTGTTCCTTTTGCTAAAATCTGACA 60.461 38.462 0.00 0.00 0.00 3.58
1142 1179 8.296713 GTGTTCCTTTTGCTAAAATCTGACATA 58.703 33.333 0.00 0.00 0.00 2.29
1151 1188 8.962884 TGCTAAAATCTGACATATGTATGTGT 57.037 30.769 8.71 0.00 46.20 3.72
1156 1193 4.111916 TCTGACATATGTATGTGTGCGTG 58.888 43.478 8.71 0.00 46.20 5.34
1160 1197 3.865164 ACATATGTATGTGTGCGTGTCTG 59.135 43.478 6.56 0.00 44.66 3.51
1161 1198 1.078709 ATGTATGTGTGCGTGTCTGC 58.921 50.000 0.00 0.00 0.00 4.26
1165 1202 1.509644 ATGTGTGCGTGTCTGCTTGG 61.510 55.000 0.00 0.00 35.36 3.61
1166 1203 2.591429 TGTGCGTGTCTGCTTGGG 60.591 61.111 0.00 0.00 35.36 4.12
1167 1204 4.030452 GTGCGTGTCTGCTTGGGC 62.030 66.667 0.00 0.00 39.26 5.36
1378 1418 0.745845 GTCTGCACCGCCTGATCAAT 60.746 55.000 0.00 0.00 0.00 2.57
1389 1429 2.708051 CCTGATCAATCCATCCATCGG 58.292 52.381 0.00 0.00 0.00 4.18
1400 1442 2.131294 ATCCATCGGACTCGTAGCGC 62.131 60.000 0.00 0.00 32.98 5.92
1401 1443 2.716244 CATCGGACTCGTAGCGCT 59.284 61.111 17.26 17.26 37.69 5.92
1404 1446 4.253257 CGGACTCGTAGCGCTCCC 62.253 72.222 16.34 4.78 0.00 4.30
1436 1478 3.056107 TGCTTCAGATGTACTGTACCACC 60.056 47.826 14.91 4.70 45.86 4.61
1437 1479 3.056107 GCTTCAGATGTACTGTACCACCA 60.056 47.826 14.91 0.00 45.86 4.17
1438 1480 4.495422 CTTCAGATGTACTGTACCACCAC 58.505 47.826 14.91 3.00 45.86 4.16
1439 1481 3.774734 TCAGATGTACTGTACCACCACT 58.225 45.455 14.91 4.98 45.86 4.00
1440 1482 3.509967 TCAGATGTACTGTACCACCACTG 59.490 47.826 14.91 14.64 45.86 3.66
1442 1484 3.510360 AGATGTACTGTACCACCACTGTC 59.490 47.826 14.91 1.92 33.32 3.51
1443 1485 2.668625 TGTACTGTACCACCACTGTCA 58.331 47.619 14.91 0.00 33.32 3.58
1469 1520 5.936686 ACTCATGGCATGAATAAGAATCG 57.063 39.130 28.50 16.67 39.11 3.34
1534 1585 1.742411 CGGTATCCTTCCACGCACAAT 60.742 52.381 0.00 0.00 0.00 2.71
1536 1587 2.627945 GTATCCTTCCACGCACAATCA 58.372 47.619 0.00 0.00 0.00 2.57
1538 1589 0.948623 TCCTTCCACGCACAATCACG 60.949 55.000 0.00 0.00 0.00 4.35
1604 1659 3.691118 CCAACATCTCATCACAAATCCGT 59.309 43.478 0.00 0.00 0.00 4.69
1617 1672 1.534729 AATCCGTCAAAAGCACTCCC 58.465 50.000 0.00 0.00 0.00 4.30
1647 1703 5.163854 ACACAAGAAGAACAGAGAAAACACG 60.164 40.000 0.00 0.00 0.00 4.49
1694 1750 0.601046 TGCTCTGAACACCAAGCTCG 60.601 55.000 0.00 0.00 35.76 5.03
1878 1934 3.644399 GAGCCCGTCCACCGAGTTC 62.644 68.421 0.00 0.00 39.56 3.01
1879 1935 3.998672 GCCCGTCCACCGAGTTCA 61.999 66.667 0.00 0.00 39.56 3.18
1953 2009 2.283173 TCGAGCAGCCTCCTGTCA 60.283 61.111 0.00 0.00 41.26 3.58
1956 2012 2.926779 AGCAGCCTCCTGTCAGCA 60.927 61.111 0.00 0.00 41.26 4.41
2070 2126 3.003763 AAGAGGAGGCGGTGGTCC 61.004 66.667 0.00 0.00 0.00 4.46
2288 2347 1.153489 CATCGTCCTGGACTGCTGG 60.153 63.158 23.49 8.63 0.00 4.85
2328 2387 1.904537 TCAGCTTGATCTTGCTCCAGA 59.095 47.619 9.48 3.46 37.44 3.86
2354 2413 2.957402 TTGCCTGGTTCTGAGACAAT 57.043 45.000 0.00 0.00 0.00 2.71
2367 2426 7.582435 TTCTGAGACAATATTTCGTCAGAAC 57.418 36.000 19.80 7.01 42.98 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 1.213926 GTCCCTACCTTCGACCTCCTA 59.786 57.143 0.00 0.00 0.00 2.94
45 46 1.874345 CTCCCACTCGTACACGGCTT 61.874 60.000 1.39 0.00 40.29 4.35
50 51 2.181021 CGGCTCCCACTCGTACAC 59.819 66.667 0.00 0.00 0.00 2.90
68 69 4.430765 TTTCGGACTCGCTCCCGC 62.431 66.667 0.00 0.00 44.96 6.13
69 70 2.488087 AAGTTTCGGACTCGCTCCCG 62.488 60.000 0.00 0.00 46.57 5.14
126 127 3.537874 CTAACCGCCCTCCCCTCG 61.538 72.222 0.00 0.00 0.00 4.63
130 131 2.365237 AGGTCTAACCGCCCTCCC 60.365 66.667 0.00 0.00 44.90 4.30
135 136 1.683418 CCTACCCAGGTCTAACCGCC 61.683 65.000 0.00 0.00 44.90 6.13
143 144 3.782443 CCGTGGCCTACCCAGGTC 61.782 72.222 3.32 0.00 46.54 3.85
148 149 3.793888 CTTCCCCGTGGCCTACCC 61.794 72.222 3.32 0.00 33.59 3.69
181 182 0.793617 ACCTTCTTCCTCCTCTCCCA 59.206 55.000 0.00 0.00 0.00 4.37
182 183 1.199615 CACCTTCTTCCTCCTCTCCC 58.800 60.000 0.00 0.00 0.00 4.30
192 193 0.321387 GTTCCCCCGACACCTTCTTC 60.321 60.000 0.00 0.00 0.00 2.87
203 204 0.255890 ATGTCCATCTTGTTCCCCCG 59.744 55.000 0.00 0.00 0.00 5.73
206 207 2.749621 GTCACATGTCCATCTTGTTCCC 59.250 50.000 0.00 0.00 33.13 3.97
208 209 2.416547 CCGTCACATGTCCATCTTGTTC 59.583 50.000 0.00 0.00 33.13 3.18
227 228 1.449601 AACGGTTAGGAGCATGCCG 60.450 57.895 15.66 11.42 46.83 5.69
229 230 0.392461 TCCAACGGTTAGGAGCATGC 60.392 55.000 10.51 10.51 0.00 4.06
231 232 4.102524 TCAATATCCAACGGTTAGGAGCAT 59.897 41.667 14.38 9.24 37.34 3.79
240 241 4.645535 CCATCAGATCAATATCCAACGGT 58.354 43.478 0.00 0.00 31.98 4.83
276 277 9.162764 GCTATCTATACCACAAAAACTTCTTCA 57.837 33.333 0.00 0.00 0.00 3.02
279 280 7.862675 AGGCTATCTATACCACAAAAACTTCT 58.137 34.615 0.00 0.00 0.00 2.85
281 282 7.862675 AGAGGCTATCTATACCACAAAAACTT 58.137 34.615 0.00 0.00 36.10 2.66
282 283 7.439108 AGAGGCTATCTATACCACAAAAACT 57.561 36.000 0.00 0.00 36.10 2.66
283 284 9.780186 ATTAGAGGCTATCTATACCACAAAAAC 57.220 33.333 0.00 0.00 40.27 2.43
305 306 9.912634 ACGGGCAAATGATGATAAATAAATTAG 57.087 29.630 0.00 0.00 0.00 1.73
307 308 9.912634 CTACGGGCAAATGATGATAAATAAATT 57.087 29.630 0.00 0.00 0.00 1.82
308 309 8.028938 GCTACGGGCAAATGATGATAAATAAAT 58.971 33.333 0.00 0.00 41.35 1.40
309 310 7.367285 GCTACGGGCAAATGATGATAAATAAA 58.633 34.615 0.00 0.00 41.35 1.40
310 311 6.908825 GCTACGGGCAAATGATGATAAATAA 58.091 36.000 0.00 0.00 41.35 1.40
311 312 6.494893 GCTACGGGCAAATGATGATAAATA 57.505 37.500 0.00 0.00 41.35 1.40
312 313 5.376854 GCTACGGGCAAATGATGATAAAT 57.623 39.130 0.00 0.00 41.35 1.40
313 314 4.829064 GCTACGGGCAAATGATGATAAA 57.171 40.909 0.00 0.00 41.35 1.40
326 327 2.124736 TCCATGCTTGCTACGGGC 60.125 61.111 0.00 0.00 42.22 6.13
327 328 1.091771 CAGTCCATGCTTGCTACGGG 61.092 60.000 0.00 0.00 0.00 5.28
328 329 1.091771 CCAGTCCATGCTTGCTACGG 61.092 60.000 0.00 0.00 0.00 4.02
329 330 0.391661 ACCAGTCCATGCTTGCTACG 60.392 55.000 0.00 0.00 0.00 3.51
330 331 1.740025 GAACCAGTCCATGCTTGCTAC 59.260 52.381 0.00 0.00 0.00 3.58
331 332 1.350684 TGAACCAGTCCATGCTTGCTA 59.649 47.619 0.00 0.00 0.00 3.49
332 333 0.111061 TGAACCAGTCCATGCTTGCT 59.889 50.000 0.00 0.00 0.00 3.91
333 334 0.524862 CTGAACCAGTCCATGCTTGC 59.475 55.000 0.00 0.00 0.00 4.01
334 335 1.808945 GTCTGAACCAGTCCATGCTTG 59.191 52.381 0.00 0.00 32.61 4.01
335 336 1.421268 TGTCTGAACCAGTCCATGCTT 59.579 47.619 0.00 0.00 32.61 3.91
336 337 1.002888 CTGTCTGAACCAGTCCATGCT 59.997 52.381 0.00 0.00 32.61 3.79
337 338 1.271054 ACTGTCTGAACCAGTCCATGC 60.271 52.381 0.00 0.00 38.81 4.06
338 339 2.847327 ACTGTCTGAACCAGTCCATG 57.153 50.000 0.00 0.00 38.81 3.66
339 340 2.234908 GCTACTGTCTGAACCAGTCCAT 59.765 50.000 4.41 0.00 42.03 3.41
340 341 1.618837 GCTACTGTCTGAACCAGTCCA 59.381 52.381 4.41 0.00 42.03 4.02
341 342 1.618837 TGCTACTGTCTGAACCAGTCC 59.381 52.381 4.41 0.00 42.03 3.85
342 343 2.297597 AGTGCTACTGTCTGAACCAGTC 59.702 50.000 4.41 0.00 42.03 3.51
343 344 2.036475 CAGTGCTACTGTCTGAACCAGT 59.964 50.000 6.24 6.24 44.90 4.00
344 345 2.297315 TCAGTGCTACTGTCTGAACCAG 59.703 50.000 13.59 0.00 46.03 4.00
345 346 2.316108 TCAGTGCTACTGTCTGAACCA 58.684 47.619 13.59 0.00 46.03 3.67
346 347 3.386768 TTCAGTGCTACTGTCTGAACC 57.613 47.619 13.59 0.00 46.03 3.62
348 349 4.672587 AAGTTCAGTGCTACTGTCTGAA 57.327 40.909 13.59 5.78 46.03 3.02
349 350 4.672587 AAAGTTCAGTGCTACTGTCTGA 57.327 40.909 13.59 0.00 46.03 3.27
350 351 4.383052 CGTAAAGTTCAGTGCTACTGTCTG 59.617 45.833 13.59 0.00 46.03 3.51
351 352 4.547532 CGTAAAGTTCAGTGCTACTGTCT 58.452 43.478 13.59 11.06 46.03 3.41
352 353 3.121445 GCGTAAAGTTCAGTGCTACTGTC 59.879 47.826 13.59 9.56 46.03 3.51
353 354 3.057734 GCGTAAAGTTCAGTGCTACTGT 58.942 45.455 13.59 0.00 46.03 3.55
354 355 4.323868 GTAGCGTAAAGTTCAGTGCTACTG 59.676 45.833 13.29 9.27 46.83 2.74
355 356 3.662247 AGCGTAAAGTTCAGTGCTACT 57.338 42.857 0.00 0.00 0.00 2.57
356 357 4.819700 GTAGCGTAAAGTTCAGTGCTAC 57.180 45.455 6.45 6.45 45.22 3.58
357 358 4.216902 TGAGTAGCGTAAAGTTCAGTGCTA 59.783 41.667 0.00 0.00 34.08 3.49
358 359 3.005472 TGAGTAGCGTAAAGTTCAGTGCT 59.995 43.478 0.00 0.00 36.51 4.40
359 360 3.314553 TGAGTAGCGTAAAGTTCAGTGC 58.685 45.455 0.00 0.00 0.00 4.40
360 361 7.488150 TCATAATGAGTAGCGTAAAGTTCAGTG 59.512 37.037 0.00 0.00 0.00 3.66
361 362 7.544622 TCATAATGAGTAGCGTAAAGTTCAGT 58.455 34.615 0.00 0.00 0.00 3.41
362 363 7.915923 TCTCATAATGAGTAGCGTAAAGTTCAG 59.084 37.037 0.00 0.00 44.58 3.02
363 364 7.768240 TCTCATAATGAGTAGCGTAAAGTTCA 58.232 34.615 0.00 0.00 44.58 3.18
364 365 8.695284 CATCTCATAATGAGTAGCGTAAAGTTC 58.305 37.037 0.00 0.00 44.58 3.01
365 366 7.653713 CCATCTCATAATGAGTAGCGTAAAGTT 59.346 37.037 0.00 0.00 44.58 2.66
366 367 7.014326 TCCATCTCATAATGAGTAGCGTAAAGT 59.986 37.037 0.00 0.00 44.58 2.66
367 368 7.371159 TCCATCTCATAATGAGTAGCGTAAAG 58.629 38.462 0.00 0.00 44.58 1.85
368 369 7.284919 TCCATCTCATAATGAGTAGCGTAAA 57.715 36.000 0.00 0.00 44.58 2.01
369 370 6.894339 TCCATCTCATAATGAGTAGCGTAA 57.106 37.500 0.00 0.00 44.58 3.18
370 371 6.095580 GGATCCATCTCATAATGAGTAGCGTA 59.904 42.308 6.95 0.00 44.58 4.42
371 372 5.105554 GGATCCATCTCATAATGAGTAGCGT 60.106 44.000 6.95 0.00 44.58 5.07
372 373 5.105595 TGGATCCATCTCATAATGAGTAGCG 60.106 44.000 11.44 0.00 44.58 4.26
373 374 6.105333 GTGGATCCATCTCATAATGAGTAGC 58.895 44.000 19.62 0.00 44.58 3.58
374 375 7.237209 TGTGGATCCATCTCATAATGAGTAG 57.763 40.000 19.62 0.00 44.58 2.57
375 376 7.803487 ATGTGGATCCATCTCATAATGAGTA 57.197 36.000 19.62 0.00 44.58 2.59
376 377 6.699242 ATGTGGATCCATCTCATAATGAGT 57.301 37.500 19.62 0.00 44.58 3.41
377 378 6.598457 GGAATGTGGATCCATCTCATAATGAG 59.402 42.308 19.62 0.00 40.02 2.90
378 379 6.044637 TGGAATGTGGATCCATCTCATAATGA 59.955 38.462 19.62 0.02 41.98 2.57
379 380 6.243148 TGGAATGTGGATCCATCTCATAATG 58.757 40.000 19.62 0.00 41.98 1.90
380 381 6.458630 TGGAATGTGGATCCATCTCATAAT 57.541 37.500 19.62 2.76 41.98 1.28
381 382 5.910355 TGGAATGTGGATCCATCTCATAA 57.090 39.130 19.62 4.04 41.98 1.90
390 391 2.839486 TCGCTATGGAATGTGGATCC 57.161 50.000 4.20 4.20 37.48 3.36
391 392 3.930336 TGATCGCTATGGAATGTGGATC 58.070 45.455 0.00 0.00 0.00 3.36
392 393 3.326006 ACTGATCGCTATGGAATGTGGAT 59.674 43.478 0.00 0.00 0.00 3.41
393 394 2.700371 ACTGATCGCTATGGAATGTGGA 59.300 45.455 0.00 0.00 0.00 4.02
394 395 2.804527 CACTGATCGCTATGGAATGTGG 59.195 50.000 0.00 0.00 0.00 4.17
395 396 2.222678 GCACTGATCGCTATGGAATGTG 59.777 50.000 0.00 0.00 0.00 3.21
396 397 2.158914 TGCACTGATCGCTATGGAATGT 60.159 45.455 0.00 0.00 0.00 2.71
397 398 2.486918 TGCACTGATCGCTATGGAATG 58.513 47.619 0.00 0.00 0.00 2.67
398 399 2.916702 TGCACTGATCGCTATGGAAT 57.083 45.000 0.00 0.00 0.00 3.01
399 400 2.916702 ATGCACTGATCGCTATGGAA 57.083 45.000 0.00 0.00 0.00 3.53
400 401 2.874086 CAAATGCACTGATCGCTATGGA 59.126 45.455 0.00 0.00 0.00 3.41
401 402 2.615447 ACAAATGCACTGATCGCTATGG 59.385 45.455 4.68 0.00 0.00 2.74
402 403 3.558829 AGACAAATGCACTGATCGCTATG 59.441 43.478 4.68 0.00 0.00 2.23
403 404 3.801698 AGACAAATGCACTGATCGCTAT 58.198 40.909 4.68 0.00 0.00 2.97
404 405 3.118992 AGAGACAAATGCACTGATCGCTA 60.119 43.478 4.68 0.00 0.00 4.26
405 406 2.005451 GAGACAAATGCACTGATCGCT 58.995 47.619 4.68 0.00 0.00 4.93
406 407 2.005451 AGAGACAAATGCACTGATCGC 58.995 47.619 4.68 0.00 0.00 4.58
407 408 3.256558 TCAGAGACAAATGCACTGATCG 58.743 45.455 4.68 0.00 33.57 3.69
408 409 4.437121 GCTTCAGAGACAAATGCACTGATC 60.437 45.833 4.68 2.96 37.43 2.92
409 410 3.439476 GCTTCAGAGACAAATGCACTGAT 59.561 43.478 4.68 0.00 37.43 2.90
410 411 2.810274 GCTTCAGAGACAAATGCACTGA 59.190 45.455 4.68 0.93 36.11 3.41
411 412 2.095364 GGCTTCAGAGACAAATGCACTG 60.095 50.000 0.00 0.00 0.00 3.66
412 413 2.157738 GGCTTCAGAGACAAATGCACT 58.842 47.619 0.00 0.00 0.00 4.40
413 414 2.095364 CAGGCTTCAGAGACAAATGCAC 60.095 50.000 0.00 0.00 31.22 4.57
414 415 2.156917 CAGGCTTCAGAGACAAATGCA 58.843 47.619 0.00 0.00 31.22 3.96
415 416 1.135460 GCAGGCTTCAGAGACAAATGC 60.135 52.381 0.00 0.00 31.22 3.56
416 417 2.156917 TGCAGGCTTCAGAGACAAATG 58.843 47.619 0.00 0.00 31.22 2.32
417 418 2.574006 TGCAGGCTTCAGAGACAAAT 57.426 45.000 0.00 0.00 31.22 2.32
418 419 2.224606 CTTGCAGGCTTCAGAGACAAA 58.775 47.619 0.00 0.00 31.22 2.83
419 420 1.544093 CCTTGCAGGCTTCAGAGACAA 60.544 52.381 0.00 0.00 31.22 3.18
420 421 0.035881 CCTTGCAGGCTTCAGAGACA 59.964 55.000 0.00 0.00 31.22 3.41
421 422 0.036022 ACCTTGCAGGCTTCAGAGAC 59.964 55.000 2.50 0.00 39.63 3.36
422 423 0.767375 AACCTTGCAGGCTTCAGAGA 59.233 50.000 2.50 0.00 39.63 3.10
423 424 1.613836 AAACCTTGCAGGCTTCAGAG 58.386 50.000 2.50 0.00 39.63 3.35
424 425 1.682854 CAAAACCTTGCAGGCTTCAGA 59.317 47.619 2.50 0.00 39.63 3.27
425 426 1.269936 CCAAAACCTTGCAGGCTTCAG 60.270 52.381 2.50 0.00 39.63 3.02
426 427 0.752054 CCAAAACCTTGCAGGCTTCA 59.248 50.000 2.50 0.00 39.63 3.02
427 428 0.752658 ACCAAAACCTTGCAGGCTTC 59.247 50.000 2.50 0.00 39.63 3.86
428 429 1.686587 GTACCAAAACCTTGCAGGCTT 59.313 47.619 2.50 0.00 39.63 4.35
429 430 1.133482 AGTACCAAAACCTTGCAGGCT 60.133 47.619 2.50 0.00 39.63 4.58
430 431 1.269723 GAGTACCAAAACCTTGCAGGC 59.730 52.381 2.50 0.00 39.63 4.85
431 432 1.535462 CGAGTACCAAAACCTTGCAGG 59.465 52.381 1.16 1.16 42.49 4.85
432 433 1.535462 CCGAGTACCAAAACCTTGCAG 59.465 52.381 0.00 0.00 0.00 4.41
433 434 1.141254 TCCGAGTACCAAAACCTTGCA 59.859 47.619 0.00 0.00 0.00 4.08
434 435 1.534163 GTCCGAGTACCAAAACCTTGC 59.466 52.381 0.00 0.00 0.00 4.01
435 436 1.796459 CGTCCGAGTACCAAAACCTTG 59.204 52.381 0.00 0.00 0.00 3.61
436 437 1.270465 CCGTCCGAGTACCAAAACCTT 60.270 52.381 0.00 0.00 0.00 3.50
437 438 0.319405 CCGTCCGAGTACCAAAACCT 59.681 55.000 0.00 0.00 0.00 3.50
438 439 0.033920 ACCGTCCGAGTACCAAAACC 59.966 55.000 0.00 0.00 0.00 3.27
439 440 1.142474 CACCGTCCGAGTACCAAAAC 58.858 55.000 0.00 0.00 0.00 2.43
440 441 0.600782 GCACCGTCCGAGTACCAAAA 60.601 55.000 0.00 0.00 0.00 2.44
441 442 1.005867 GCACCGTCCGAGTACCAAA 60.006 57.895 0.00 0.00 0.00 3.28
442 443 2.652530 GCACCGTCCGAGTACCAA 59.347 61.111 0.00 0.00 0.00 3.67
443 444 3.740397 CGCACCGTCCGAGTACCA 61.740 66.667 0.00 0.00 0.00 3.25
444 445 3.741476 ACGCACCGTCCGAGTACC 61.741 66.667 0.00 0.00 33.69 3.34
459 460 3.530104 GTAACTGACGCCGCGACG 61.530 66.667 21.79 14.75 39.50 5.12
460 461 1.804326 ATGTAACTGACGCCGCGAC 60.804 57.895 21.79 14.65 0.00 5.19
461 462 1.803922 CATGTAACTGACGCCGCGA 60.804 57.895 21.79 0.00 0.00 5.87
462 463 2.695055 CATGTAACTGACGCCGCG 59.305 61.111 12.14 12.14 0.00 6.46
463 464 2.399611 GCATGTAACTGACGCCGC 59.600 61.111 0.00 0.00 0.00 6.53
464 465 2.695055 CGCATGTAACTGACGCCG 59.305 61.111 0.00 0.00 0.00 6.46
465 466 2.399611 GCGCATGTAACTGACGCC 59.600 61.111 0.30 0.00 43.58 5.68
467 468 0.799152 TACGGCGCATGTAACTGACG 60.799 55.000 10.83 1.09 0.00 4.35
468 469 0.643820 GTACGGCGCATGTAACTGAC 59.356 55.000 10.83 0.00 0.00 3.51
469 470 0.799152 CGTACGGCGCATGTAACTGA 60.799 55.000 10.83 0.00 0.00 3.41
470 471 1.074319 ACGTACGGCGCATGTAACTG 61.074 55.000 21.06 7.56 46.11 3.16
471 472 0.451383 TACGTACGGCGCATGTAACT 59.549 50.000 21.06 2.63 46.11 2.24
472 473 0.567509 GTACGTACGGCGCATGTAAC 59.432 55.000 21.06 3.26 46.11 2.50
473 474 0.861034 CGTACGTACGGCGCATGTAA 60.861 55.000 34.54 0.00 45.30 2.41
474 475 1.297524 CGTACGTACGGCGCATGTA 60.298 57.895 34.54 7.59 45.30 2.29
475 476 2.577644 CGTACGTACGGCGCATGT 60.578 61.111 34.54 8.85 45.30 3.21
738 760 4.385405 AGCGGCAGAGCAGTGGTC 62.385 66.667 14.56 14.56 40.15 4.02
739 761 4.385405 GAGCGGCAGAGCAGTGGT 62.385 66.667 1.45 0.00 40.15 4.16
740 762 4.079850 AGAGCGGCAGAGCAGTGG 62.080 66.667 1.45 0.00 40.15 4.00
741 763 2.814341 CAGAGCGGCAGAGCAGTG 60.814 66.667 1.45 0.00 40.15 3.66
742 764 4.756458 GCAGAGCGGCAGAGCAGT 62.756 66.667 1.45 0.00 40.15 4.40
743 765 4.754667 TGCAGAGCGGCAGAGCAG 62.755 66.667 1.45 0.00 39.25 4.24
744 766 4.318949 TTGCAGAGCGGCAGAGCA 62.319 61.111 1.45 5.93 45.88 4.26
745 767 3.497932 CTTGCAGAGCGGCAGAGC 61.498 66.667 1.45 3.01 45.88 4.09
746 768 2.818714 CCTTGCAGAGCGGCAGAG 60.819 66.667 1.45 0.00 45.88 3.35
796 818 3.706373 GGACGAGGCCTGGCTTGA 61.706 66.667 12.00 0.00 0.00 3.02
815 837 0.956633 TATACGTAGCTTCGCCCCTG 59.043 55.000 13.05 0.00 0.00 4.45
816 838 1.245732 CTATACGTAGCTTCGCCCCT 58.754 55.000 13.05 0.00 0.00 4.79
817 839 3.788775 CTATACGTAGCTTCGCCCC 57.211 57.895 13.05 0.00 0.00 5.80
826 848 2.481952 GACACCGGGTAGCTATACGTAG 59.518 54.545 6.32 11.16 32.24 3.51
827 849 2.158827 TGACACCGGGTAGCTATACGTA 60.159 50.000 6.32 0.00 32.24 3.57
828 850 1.312815 GACACCGGGTAGCTATACGT 58.687 55.000 6.32 0.00 32.24 3.57
829 851 1.002033 GTGACACCGGGTAGCTATACG 60.002 57.143 6.32 11.66 32.24 3.06
830 852 2.034305 CAGTGACACCGGGTAGCTATAC 59.966 54.545 6.32 0.00 0.00 1.47
831 853 2.304092 CAGTGACACCGGGTAGCTATA 58.696 52.381 6.32 0.00 0.00 1.31
832 854 1.112113 CAGTGACACCGGGTAGCTAT 58.888 55.000 6.32 0.00 0.00 2.97
833 855 0.968901 CCAGTGACACCGGGTAGCTA 60.969 60.000 6.32 0.00 0.00 3.32
834 856 2.283529 CCAGTGACACCGGGTAGCT 61.284 63.158 6.32 0.00 0.00 3.32
835 857 2.264794 CCAGTGACACCGGGTAGC 59.735 66.667 6.32 0.00 0.00 3.58
836 858 2.264794 GCCAGTGACACCGGGTAG 59.735 66.667 6.32 0.00 0.00 3.18
837 859 2.524640 TGCCAGTGACACCGGGTA 60.525 61.111 6.32 5.38 0.00 3.69
838 860 4.250305 GTGCCAGTGACACCGGGT 62.250 66.667 6.32 0.00 31.67 5.28
843 865 4.250305 ACCCGGTGCCAGTGACAC 62.250 66.667 0.13 0.13 37.31 3.67
844 866 4.248842 CACCCGGTGCCAGTGACA 62.249 66.667 4.16 0.00 33.21 3.58
861 883 3.486209 GCCAATAAGTGCATGCAAATTGC 60.486 43.478 29.02 23.52 45.29 3.56
862 884 3.936453 AGCCAATAAGTGCATGCAAATTG 59.064 39.130 28.21 28.21 0.00 2.32
863 885 4.210724 AGCCAATAAGTGCATGCAAATT 57.789 36.364 24.58 21.63 0.00 1.82
864 886 3.899052 AGCCAATAAGTGCATGCAAAT 57.101 38.095 24.58 16.60 0.00 2.32
865 887 3.681593 AAGCCAATAAGTGCATGCAAA 57.318 38.095 24.58 11.67 0.00 3.68
866 888 3.763360 ACTAAGCCAATAAGTGCATGCAA 59.237 39.130 24.58 7.64 0.00 4.08
867 889 3.129113 CACTAAGCCAATAAGTGCATGCA 59.871 43.478 18.46 18.46 34.73 3.96
868 890 3.129287 ACACTAAGCCAATAAGTGCATGC 59.871 43.478 11.82 11.82 43.53 4.06
869 891 4.156556 ACACACTAAGCCAATAAGTGCATG 59.843 41.667 0.00 0.00 43.53 4.06
870 892 4.335416 ACACACTAAGCCAATAAGTGCAT 58.665 39.130 0.00 0.00 43.53 3.96
871 893 3.750371 ACACACTAAGCCAATAAGTGCA 58.250 40.909 1.78 0.00 43.53 4.57
872 894 4.332819 CCTACACACTAAGCCAATAAGTGC 59.667 45.833 1.78 0.00 43.53 4.40
873 895 4.332819 GCCTACACACTAAGCCAATAAGTG 59.667 45.833 0.37 0.37 44.89 3.16
874 896 4.514401 GCCTACACACTAAGCCAATAAGT 58.486 43.478 0.00 0.00 0.00 2.24
875 897 3.877508 GGCCTACACACTAAGCCAATAAG 59.122 47.826 0.00 0.00 43.32 1.73
876 898 3.881220 GGCCTACACACTAAGCCAATAA 58.119 45.455 0.00 0.00 43.32 1.40
877 899 3.553828 GGCCTACACACTAAGCCAATA 57.446 47.619 0.00 0.00 43.32 1.90
878 900 2.420058 GGCCTACACACTAAGCCAAT 57.580 50.000 0.00 0.00 43.32 3.16
879 901 3.948735 GGCCTACACACTAAGCCAA 57.051 52.632 0.00 0.00 43.32 4.52
881 903 2.289565 GAATGGCCTACACACTAAGCC 58.710 52.381 3.32 0.00 44.13 4.35
882 904 2.985896 TGAATGGCCTACACACTAAGC 58.014 47.619 3.32 0.00 0.00 3.09
883 905 5.415701 ACAATTGAATGGCCTACACACTAAG 59.584 40.000 13.59 0.00 0.00 2.18
884 906 5.321102 ACAATTGAATGGCCTACACACTAA 58.679 37.500 13.59 0.00 0.00 2.24
885 907 4.917385 ACAATTGAATGGCCTACACACTA 58.083 39.130 13.59 0.00 0.00 2.74
886 908 3.766545 ACAATTGAATGGCCTACACACT 58.233 40.909 13.59 0.00 0.00 3.55
887 909 4.519540 AACAATTGAATGGCCTACACAC 57.480 40.909 13.59 0.00 0.00 3.82
888 910 4.586421 TCAAACAATTGAATGGCCTACACA 59.414 37.500 13.59 0.00 42.47 3.72
889 911 5.132897 TCAAACAATTGAATGGCCTACAC 57.867 39.130 13.59 0.00 42.47 2.90
897 919 8.974408 CATGCCTACATATCAAACAATTGAATG 58.026 33.333 13.59 10.40 40.86 2.67
898 920 8.698210 ACATGCCTACATATCAAACAATTGAAT 58.302 29.630 13.59 2.86 40.86 2.57
899 921 7.975058 CACATGCCTACATATCAAACAATTGAA 59.025 33.333 13.59 0.00 40.86 2.69
900 922 7.122501 ACACATGCCTACATATCAAACAATTGA 59.877 33.333 13.59 0.00 41.36 2.57
901 923 7.259882 ACACATGCCTACATATCAAACAATTG 58.740 34.615 3.24 3.24 33.67 2.32
902 924 7.408756 ACACATGCCTACATATCAAACAATT 57.591 32.000 0.00 0.00 33.67 2.32
903 925 7.340232 AGAACACATGCCTACATATCAAACAAT 59.660 33.333 0.00 0.00 33.67 2.71
904 926 6.658816 AGAACACATGCCTACATATCAAACAA 59.341 34.615 0.00 0.00 33.67 2.83
905 927 6.179756 AGAACACATGCCTACATATCAAACA 58.820 36.000 0.00 0.00 33.67 2.83
906 928 6.683974 AGAACACATGCCTACATATCAAAC 57.316 37.500 0.00 0.00 33.67 2.93
907 929 7.112122 AGAAGAACACATGCCTACATATCAAA 58.888 34.615 0.00 0.00 33.67 2.69
908 930 6.653020 AGAAGAACACATGCCTACATATCAA 58.347 36.000 0.00 0.00 33.67 2.57
909 931 6.239217 AGAAGAACACATGCCTACATATCA 57.761 37.500 0.00 0.00 33.67 2.15
911 933 9.881649 CATATAGAAGAACACATGCCTACATAT 57.118 33.333 0.00 0.00 33.67 1.78
912 934 8.314021 CCATATAGAAGAACACATGCCTACATA 58.686 37.037 0.00 0.00 33.67 2.29
913 935 7.016563 TCCATATAGAAGAACACATGCCTACAT 59.983 37.037 0.00 0.00 36.79 2.29
914 936 6.326323 TCCATATAGAAGAACACATGCCTACA 59.674 38.462 0.00 0.00 0.00 2.74
915 937 6.647067 GTCCATATAGAAGAACACATGCCTAC 59.353 42.308 0.00 0.00 0.00 3.18
916 938 6.326323 TGTCCATATAGAAGAACACATGCCTA 59.674 38.462 0.00 0.00 0.00 3.93
917 939 5.130975 TGTCCATATAGAAGAACACATGCCT 59.869 40.000 0.00 0.00 0.00 4.75
918 940 5.237344 GTGTCCATATAGAAGAACACATGCC 59.763 44.000 0.00 0.00 0.00 4.40
919 941 5.237344 GGTGTCCATATAGAAGAACACATGC 59.763 44.000 5.88 0.00 0.00 4.06
920 942 5.463392 CGGTGTCCATATAGAAGAACACATG 59.537 44.000 5.88 0.00 0.00 3.21
921 943 5.453339 CCGGTGTCCATATAGAAGAACACAT 60.453 44.000 0.00 0.00 0.00 3.21
922 944 4.142026 CCGGTGTCCATATAGAAGAACACA 60.142 45.833 0.00 0.00 0.00 3.72
923 945 4.369182 CCGGTGTCCATATAGAAGAACAC 58.631 47.826 0.00 0.00 0.00 3.32
924 946 3.386726 CCCGGTGTCCATATAGAAGAACA 59.613 47.826 0.00 0.00 0.00 3.18
925 947 3.387050 ACCCGGTGTCCATATAGAAGAAC 59.613 47.826 0.00 0.00 0.00 3.01
926 948 3.649843 ACCCGGTGTCCATATAGAAGAA 58.350 45.455 0.00 0.00 0.00 2.52
927 949 3.323774 ACCCGGTGTCCATATAGAAGA 57.676 47.619 0.00 0.00 0.00 2.87
928 950 5.740290 ATTACCCGGTGTCCATATAGAAG 57.260 43.478 0.00 0.00 0.00 2.85
929 951 6.503560 AAATTACCCGGTGTCCATATAGAA 57.496 37.500 0.00 0.00 0.00 2.10
930 952 6.503560 AAAATTACCCGGTGTCCATATAGA 57.496 37.500 0.00 0.00 0.00 1.98
931 953 7.935210 ACTTAAAATTACCCGGTGTCCATATAG 59.065 37.037 0.00 0.00 0.00 1.31
932 954 7.804147 ACTTAAAATTACCCGGTGTCCATATA 58.196 34.615 0.00 0.00 0.00 0.86
933 955 6.665695 ACTTAAAATTACCCGGTGTCCATAT 58.334 36.000 0.00 0.00 0.00 1.78
934 956 6.064735 ACTTAAAATTACCCGGTGTCCATA 57.935 37.500 0.00 0.00 0.00 2.74
935 957 4.925836 ACTTAAAATTACCCGGTGTCCAT 58.074 39.130 0.00 0.00 0.00 3.41
936 958 4.041938 AGACTTAAAATTACCCGGTGTCCA 59.958 41.667 0.00 0.00 0.00 4.02
937 959 4.393990 CAGACTTAAAATTACCCGGTGTCC 59.606 45.833 0.00 0.00 0.00 4.02
938 960 4.393990 CCAGACTTAAAATTACCCGGTGTC 59.606 45.833 0.00 0.00 0.00 3.67
939 961 4.041938 TCCAGACTTAAAATTACCCGGTGT 59.958 41.667 0.00 0.00 0.00 4.16
940 962 4.581868 TCCAGACTTAAAATTACCCGGTG 58.418 43.478 0.00 0.00 0.00 4.94
941 963 4.914177 TCCAGACTTAAAATTACCCGGT 57.086 40.909 0.00 0.00 0.00 5.28
942 964 4.820173 GGATCCAGACTTAAAATTACCCGG 59.180 45.833 6.95 0.00 0.00 5.73
943 965 4.510340 CGGATCCAGACTTAAAATTACCCG 59.490 45.833 13.41 0.00 0.00 5.28
944 966 4.275196 GCGGATCCAGACTTAAAATTACCC 59.725 45.833 13.41 0.00 0.00 3.69
945 967 4.275196 GGCGGATCCAGACTTAAAATTACC 59.725 45.833 13.41 0.00 34.01 2.85
946 968 4.275196 GGGCGGATCCAGACTTAAAATTAC 59.725 45.833 13.41 0.00 36.21 1.89
947 969 4.457466 GGGCGGATCCAGACTTAAAATTA 58.543 43.478 13.41 0.00 36.21 1.40
948 970 3.288092 GGGCGGATCCAGACTTAAAATT 58.712 45.455 13.41 0.00 36.21 1.82
949 971 2.422945 GGGGCGGATCCAGACTTAAAAT 60.423 50.000 13.41 0.00 36.21 1.82
950 972 1.064979 GGGGCGGATCCAGACTTAAAA 60.065 52.381 13.41 0.00 36.21 1.52
951 973 0.544697 GGGGCGGATCCAGACTTAAA 59.455 55.000 13.41 0.00 36.21 1.52
952 974 0.326238 AGGGGCGGATCCAGACTTAA 60.326 55.000 13.41 0.00 36.21 1.85
953 975 1.048724 CAGGGGCGGATCCAGACTTA 61.049 60.000 13.41 0.00 36.21 2.24
954 976 2.041265 AGGGGCGGATCCAGACTT 59.959 61.111 13.41 0.00 36.21 3.01
955 977 2.765807 CAGGGGCGGATCCAGACT 60.766 66.667 13.41 0.76 36.21 3.24
956 978 4.554036 GCAGGGGCGGATCCAGAC 62.554 72.222 13.41 6.73 36.21 3.51
968 990 3.465403 CTGGAGGGACGAGCAGGG 61.465 72.222 0.00 0.00 0.00 4.45
969 991 4.154347 GCTGGAGGGACGAGCAGG 62.154 72.222 0.00 0.00 46.89 4.85
973 995 2.575993 CTGTGCTGGAGGGACGAG 59.424 66.667 0.00 0.00 39.22 4.18
974 996 3.695606 GCTGTGCTGGAGGGACGA 61.696 66.667 0.00 0.00 39.22 4.20
975 997 3.947132 CTGCTGTGCTGGAGGGACG 62.947 68.421 0.00 0.00 39.22 4.79
976 998 2.046507 CTGCTGTGCTGGAGGGAC 60.047 66.667 0.00 0.00 36.78 4.46
977 999 4.025858 GCTGCTGTGCTGGAGGGA 62.026 66.667 0.00 0.00 0.00 4.20
979 1001 4.383861 TCGCTGCTGTGCTGGAGG 62.384 66.667 0.00 0.00 0.00 4.30
980 1002 2.814341 CTCGCTGCTGTGCTGGAG 60.814 66.667 0.00 0.00 0.00 3.86
1070 1097 1.801302 AACTGGGGAGGAGAGGACGA 61.801 60.000 0.00 0.00 0.00 4.20
1075 1102 3.028130 GAGTAAGAACTGGGGAGGAGAG 58.972 54.545 0.00 0.00 35.56 3.20
1076 1103 2.620886 CGAGTAAGAACTGGGGAGGAGA 60.621 54.545 0.00 0.00 35.56 3.71
1077 1104 1.751924 CGAGTAAGAACTGGGGAGGAG 59.248 57.143 0.00 0.00 35.56 3.69
1131 1168 5.817296 ACGCACACATACATATGTCAGATTT 59.183 36.000 12.68 0.00 44.57 2.17
1140 1177 2.866156 GCAGACACGCACACATACATAT 59.134 45.455 0.00 0.00 0.00 1.78
1142 1179 1.078709 GCAGACACGCACACATACAT 58.921 50.000 0.00 0.00 0.00 2.29
1147 1184 2.179547 CCAAGCAGACACGCACACA 61.180 57.895 0.00 0.00 0.00 3.72
1151 1188 4.560743 TGCCCAAGCAGACACGCA 62.561 61.111 0.00 0.00 46.52 5.24
1160 1197 3.766691 CACCTGCCATGCCCAAGC 61.767 66.667 0.00 0.00 40.48 4.01
1161 1198 3.766691 GCACCTGCCATGCCCAAG 61.767 66.667 0.00 0.00 37.08 3.61
1378 1418 1.605753 CTACGAGTCCGATGGATGGA 58.394 55.000 0.00 0.00 39.50 3.41
1389 1429 2.408241 ACAGGGAGCGCTACGAGTC 61.408 63.158 14.83 0.00 0.00 3.36
1400 1442 1.202687 TGAAGCAACAGACACAGGGAG 60.203 52.381 0.00 0.00 0.00 4.30
1401 1443 0.836606 TGAAGCAACAGACACAGGGA 59.163 50.000 0.00 0.00 0.00 4.20
1436 1478 1.276138 TGCCATGAGTAGGTGACAGTG 59.724 52.381 0.00 0.00 0.00 3.66
1437 1479 1.644509 TGCCATGAGTAGGTGACAGT 58.355 50.000 0.00 0.00 0.00 3.55
1438 1480 2.169144 TCATGCCATGAGTAGGTGACAG 59.831 50.000 2.53 0.00 33.59 3.51
1439 1481 2.187100 TCATGCCATGAGTAGGTGACA 58.813 47.619 2.53 0.00 33.59 3.58
1440 1482 2.988010 TCATGCCATGAGTAGGTGAC 57.012 50.000 2.53 0.00 33.59 3.67
1442 1484 5.614308 TCTTATTCATGCCATGAGTAGGTG 58.386 41.667 15.64 8.85 40.94 4.00
1443 1485 5.894298 TCTTATTCATGCCATGAGTAGGT 57.106 39.130 15.64 2.84 40.94 3.08
1534 1585 1.217001 CTAAGCTTGTGTGTGCGTGA 58.783 50.000 9.86 0.00 0.00 4.35
1536 1587 1.663695 AACTAAGCTTGTGTGTGCGT 58.336 45.000 9.86 0.00 0.00 5.24
1538 1589 4.452455 AGATGTAACTAAGCTTGTGTGTGC 59.548 41.667 9.86 3.38 0.00 4.57
1647 1703 3.824443 ACTTGTACAGTACATTTTGGGGC 59.176 43.478 14.34 0.00 38.68 5.80
1694 1750 3.005261 ACTGACTGACTGACTGTGTGATC 59.995 47.826 0.00 0.00 0.00 2.92
2205 2264 1.154263 CAGAACCGTCCTCGTCGTC 60.154 63.158 0.00 0.00 35.01 4.20
2219 2278 3.253188 CCCGACAAAAGCTTTCATCAGAA 59.747 43.478 13.10 0.00 0.00 3.02
2288 2347 3.569701 TGAAGAAATCCCACAAGCAAGTC 59.430 43.478 0.00 0.00 0.00 3.01
2328 2387 3.087031 CTCAGAACCAGGCAATTCATGT 58.913 45.455 0.00 0.00 0.00 3.21


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.